Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532600 | XP_004513903.1 | 58.108 | 148 | 58 | 2 | 41 | 187 | 93 | 237 | 1.25e-46 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532600 | A0A1S2Z2K9 | 58.108 | 148 | 58 | 2 | 41 | 187 | 93 | 237 | 5.99e-47 | 163 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0532600 | 0.819672 | 1.026813e-52 | -8.615850e-47 |
| Msa0063540 | Msa0532600 | 0.822221 | 2.660716e-53 | -8.615850e-47 |
| Msa0391270 | Msa0532600 | 0.803908 | 2.785210e-49 | -8.615850e-47 |
| Msa0419570 | Msa0532600 | 0.805148 | 1.535245e-49 | -8.615850e-47 |
| Msa0299030 | Msa0532600 | 0.807159 | 5.793001e-50 | -8.615850e-47 |
| Msa0316020 | Msa0532600 | 0.805306 | 1.422873e-49 | -8.615850e-47 |
| Msa0523720 | Msa0532600 | 0.811953 | 5.410207e-51 | -8.615850e-47 |
| Msa0532600 | Msa0629160 | 0.822382 | 2.440536e-53 | -8.615850e-47 |
| Msa0532600 | Msa0629690 | 0.926388 | 5.023572e-91 | -8.615850e-47 |
| Msa0532600 | Msa1029820 | 0.801040 | 1.085964e-48 | -8.615850e-47 |
| Msa0532600 | Msa1368420 | 0.804573 | 2.024686e-49 | -8.615850e-47 |
| Msa0532600 | Msa1383220 | 0.802040 | 6.774895e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532600 | MtrunA17_Chr4g0006041 | 47.468 | 158 | 65 | 5 | 45 | 189 | 50 | 202 | 9.28e-35 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTAATGCTTCTCAAAT+TGG | 0.206072 | 4_1:-6795907 | None:intergenic |
| GTTGCGGATGGCAGACCTTT+AGG | 0.312919 | 4_1:+6796142 | Msa0532600:CDS |
| CCAAATGCTGAGATTGAGTT+AGG | 0.318672 | 4_1:+6796026 | Msa0532600:CDS |
| AAACATCTTTCAGAGAATAA+TGG | 0.333812 | 4_1:+6795936 | Msa0532600:CDS |
| AACATCTTTCAGAGAATAAT+GGG | 0.354100 | 4_1:+6795937 | Msa0532600:CDS |
| TGATATAACCCTTGTTTGCT+TGG | 0.364098 | 4_1:-6795196 | None:intergenic |
| CCTAACTCAATCTCAGCATT+TGG | 0.372392 | 4_1:-6796026 | None:intergenic |
| CGTCTACTTGCATCTGAACT+TGG | 0.408967 | 4_1:-6795039 | None:intergenic |
| CTCTCTGTTTCTGTGTCGGT+TGG | 0.422209 | 4_1:-6795865 | None:intergenic |
| GCAAGTAGACGTCATAAATC+TGG | 0.428957 | 4_1:+6795051 | Msa0532600:CDS |
| CTCCTACTTCGCGATGAACT+TGG | 0.437490 | 4_1:-6795111 | None:intergenic |
| AAGCAAACAAGGGTTATATC+AGG | 0.438093 | 4_1:+6795198 | Msa0532600:CDS |
| GATGAACTTGGTGATCTTGA+TGG | 0.447905 | 4_1:-6795099 | None:intergenic |
| GATATAACCCTTGTTTGCTT+GGG | 0.465551 | 4_1:-6795195 | None:intergenic |
| ATGGACTACGACTTACGTAT+TGG | 0.477204 | 4_1:-6795080 | None:intergenic |
| ATATCTCTCTGTTTCTGTGT+CGG | 0.485989 | 4_1:-6795869 | None:intergenic |
| ATAGCTCATCTTCTGCTGTA+AGG | 0.487175 | 4_1:-6795842 | None:intergenic |
| CAAATGCTGAGATTGAGTTA+GGG | 0.494654 | 4_1:+6796027 | Msa0532600:CDS |
| TCCGCAACCTGTGTTTGCAT+TGG | 0.499695 | 4_1:-6796127 | None:intergenic |
| TCCAATGCAAACACAGGTTG+CGG | 0.514202 | 4_1:+6796126 | Msa0532600:CDS |
| ATTTGAGAAGCATTAAGAAA+CGG | 0.519890 | 4_1:+6795910 | Msa0532600:CDS |
| TGCTGCATCAGATATTTCAA+TGG | 0.551180 | 4_1:-6795979 | None:intergenic |
| GTGGAGAAATGGGGTATCCA+AGG | 0.564365 | 4_1:+6794879 | None:intergenic |
| GTAGCATGCCCAAGCAAACA+AGG | 0.566760 | 4_1:+6795187 | Msa0532600:CDS |
| GACTACGACTTACGTATTGG+CGG | 0.568651 | 4_1:-6795077 | None:intergenic |
| TCAATGTCAATTCCTTCTTG+TGG | 0.574145 | 4_1:-6795804 | None:intergenic |
| AAATGCTGAGATTGAGTTAG+GGG | 0.595664 | 4_1:+6796028 | Msa0532600:CDS |
| ACTACGACTTACGTATTGGC+GGG | 0.596278 | 4_1:-6795076 | None:intergenic |
| CACCAAGTTCATCGCGAAGT+AGG | 0.601770 | 4_1:+6795109 | Msa0532600:CDS |
| ATGCAAACACAGGTTGCGGA+TGG | 0.601836 | 4_1:+6796130 | Msa0532600:CDS |
| AATGCTGAGATTGAGTTAGG+GGG | 0.647383 | 4_1:+6796029 | Msa0532600:CDS |
| TACTTGTCCAATGCAAACAC+AGG | 0.647609 | 4_1:+6796120 | Msa0532600:CDS |
| TGGGACGTTCTCAATTGATG+AGG | 0.654936 | 4_1:+6795956 | Msa0532600:CDS |
| ATGCTGAGATTGAGTTAGGG+GGG | 0.660841 | 4_1:+6796030 | Msa0532600:CDS |
| TAGCATGCCCAAGCAAACAA+GGG | 0.691614 | 4_1:+6795188 | Msa0532600:CDS |
| TAATGCGTGCTGTATGACGT+CGG | 0.710297 | 4_1:-6795164 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATATGAGTTTATAAATA+AGG | - | chr4_1:6795320-6795339 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAACTTTGCA+AGG | + | chr4_1:6795696-6795715 | Msa0532600:intron | 15.0% |
| !! | AAAAAAAAAAAACTTTGCAA+GGG | + | chr4_1:6795697-6795716 | Msa0532600:intron | 15.0% |
| !! | TGAATATGAGTTTATAAATA+AGG | - | chr4_1:6795320-6795339 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAACTTTGCA+AGG | + | chr4_1:6795696-6795715 | Msa0532600:intron | 15.0% |
| !! | AAAAAAAAAAAACTTTGCAA+GGG | + | chr4_1:6795697-6795716 | Msa0532600:intron | 15.0% |
| !! | GATATTGTATATTATATGCA+GGG | - | chr4_1:6794918-6794937 | None:intergenic | 20.0% |
| !! | AGATATTGTATATTATATGC+AGG | - | chr4_1:6794919-6794938 | None:intergenic | 20.0% |
| !! | GATATTGTATATTATATGCA+GGG | - | chr4_1:6794918-6794937 | None:intergenic | 20.0% |
| !! | AGATATTGTATATTATATGC+AGG | - | chr4_1:6794919-6794938 | None:intergenic | 20.0% |
| !!! | ATATTTTATCTCACTTTTGC+AGG | + | chr4_1:6795016-6795035 | Msa0532600:intron | 25.0% |
| !! | ACACAAATATGTGATTTTGT+TGG | - | chr4_1:6795766-6795785 | None:intergenic | 25.0% |
| ! | TTTCTTAATGCTTCTCAAAT+TGG | - | chr4_1:6795910-6795929 | None:intergenic | 25.0% |
| !!! | ATTTGAGAAGCATTAAGAAA+CGG | + | chr4_1:6795910-6795929 | Msa0532600:CDS | 25.0% |
| ! | AAACATCTTTCAGAGAATAA+TGG | + | chr4_1:6795936-6795955 | Msa0532600:CDS | 25.0% |
| ! | AACATCTTTCAGAGAATAAT+GGG | + | chr4_1:6795937-6795956 | Msa0532600:CDS | 25.0% |
| !!! | ATATTTTATCTCACTTTTGC+AGG | + | chr4_1:6795016-6795035 | Msa0532600:intron | 25.0% |
| !! | ACACAAATATGTGATTTTGT+TGG | - | chr4_1:6795766-6795785 | None:intergenic | 25.0% |
| ! | TTTCTTAATGCTTCTCAAAT+TGG | - | chr4_1:6795910-6795929 | None:intergenic | 25.0% |
| !!! | ATTTGAGAAGCATTAAGAAA+CGG | + | chr4_1:6795910-6795929 | Msa0532600:CDS | 25.0% |
| ! | AAACATCTTTCAGAGAATAA+TGG | + | chr4_1:6795936-6795955 | Msa0532600:CDS | 25.0% |
| ! | AACATCTTTCAGAGAATAAT+GGG | + | chr4_1:6795937-6795956 | Msa0532600:CDS | 25.0% |
| !! | TTACTTTTACTTTGCATTGC+AGG | - | chr4_1:6795141-6795160 | None:intergenic | 30.0% |
| ! | TGCTATATTTTGTCTGATGT+CGG | + | chr4_1:6795340-6795359 | Msa0532600:intron | 30.0% |
| TGGTTCATAGACATAAATTG+TGG | + | chr4_1:6795394-6795413 | Msa0532600:intron | 30.0% | |
| GGTTCATAGACATAAATTGT+GGG | + | chr4_1:6795395-6795414 | Msa0532600:intron | 30.0% | |
| TGATACCATCTTAAAAATCG+TGG | + | chr4_1:6795473-6795492 | Msa0532600:intron | 30.0% | |
| GTCGTATATCAGACAAAATA+TGG | - | chr4_1:6795572-6795591 | None:intergenic | 30.0% | |
| !! | TTACTTTTACTTTGCATTGC+AGG | - | chr4_1:6795141-6795160 | None:intergenic | 30.0% |
| ! | TGCTATATTTTGTCTGATGT+CGG | + | chr4_1:6795340-6795359 | Msa0532600:intron | 30.0% |
| TGGTTCATAGACATAAATTG+TGG | + | chr4_1:6795394-6795413 | Msa0532600:intron | 30.0% | |
| GGTTCATAGACATAAATTGT+GGG | + | chr4_1:6795395-6795414 | Msa0532600:intron | 30.0% | |
| TGATACCATCTTAAAAATCG+TGG | + | chr4_1:6795473-6795492 | Msa0532600:intron | 30.0% | |
| GTCGTATATCAGACAAAATA+TGG | - | chr4_1:6795572-6795591 | None:intergenic | 30.0% | |
| CTCTGTGAGTTTAATTCAGT+TGG | - | chr4_1:6794945-6794964 | None:intergenic | 35.0% | |
| ! | GATATAACCCTTGTTTGCTT+GGG | - | chr4_1:6795198-6795217 | None:intergenic | 35.0% |
| ! | TGATATAACCCTTGTTTGCT+TGG | - | chr4_1:6795199-6795218 | None:intergenic | 35.0% |
| AAGCAAACAAGGGTTATATC+AGG | + | chr4_1:6795198-6795217 | Msa0532600:CDS | 35.0% | |
| AATCCATATACCTCACAATC+CGG | - | chr4_1:6795295-6795314 | None:intergenic | 35.0% | |
| TCATAGACATAAATTGTGGG+TGG | + | chr4_1:6795398-6795417 | Msa0532600:intron | 35.0% | |
| !! | CTCAACCACGATTTTTAAGA+TGG | - | chr4_1:6795481-6795500 | None:intergenic | 35.0% |
| CACCACAAAATCAGTTTGTA+AGG | + | chr4_1:6795511-6795530 | Msa0532600:intron | 35.0% | |
| !! | CACCTTACAAACTGATTTTG+TGG | - | chr4_1:6795516-6795535 | None:intergenic | 35.0% |
| TCAATGTCAATTCCTTCTTG+TGG | - | chr4_1:6795807-6795826 | None:intergenic | 35.0% | |
| !! | ATATCTCTCTGTTTCTGTGT+CGG | - | chr4_1:6795872-6795891 | None:intergenic | 35.0% |
| TGCTGCATCAGATATTTCAA+TGG | - | chr4_1:6795982-6796001 | None:intergenic | 35.0% | |
| CAAATGCTGAGATTGAGTTA+GGG | + | chr4_1:6796027-6796046 | Msa0532600:CDS | 35.0% | |
| AAATGCTGAGATTGAGTTAG+GGG | + | chr4_1:6796028-6796047 | Msa0532600:CDS | 35.0% | |
| CTCTGTGAGTTTAATTCAGT+TGG | - | chr4_1:6794945-6794964 | None:intergenic | 35.0% | |
| ! | GATATAACCCTTGTTTGCTT+GGG | - | chr4_1:6795198-6795217 | None:intergenic | 35.0% |
| ! | TGATATAACCCTTGTTTGCT+TGG | - | chr4_1:6795199-6795218 | None:intergenic | 35.0% |
| AAGCAAACAAGGGTTATATC+AGG | + | chr4_1:6795198-6795217 | Msa0532600:CDS | 35.0% | |
| AATCCATATACCTCACAATC+CGG | - | chr4_1:6795295-6795314 | None:intergenic | 35.0% | |
| TCATAGACATAAATTGTGGG+TGG | + | chr4_1:6795398-6795417 | Msa0532600:intron | 35.0% | |
| !! | CTCAACCACGATTTTTAAGA+TGG | - | chr4_1:6795481-6795500 | None:intergenic | 35.0% |
| CACCACAAAATCAGTTTGTA+AGG | + | chr4_1:6795511-6795530 | Msa0532600:intron | 35.0% | |
| !! | CACCTTACAAACTGATTTTG+TGG | - | chr4_1:6795516-6795535 | None:intergenic | 35.0% |
| TCAATGTCAATTCCTTCTTG+TGG | - | chr4_1:6795807-6795826 | None:intergenic | 35.0% | |
| !! | ATATCTCTCTGTTTCTGTGT+CGG | - | chr4_1:6795872-6795891 | None:intergenic | 35.0% |
| TGCTGCATCAGATATTTCAA+TGG | - | chr4_1:6795982-6796001 | None:intergenic | 35.0% | |
| CAAATGCTGAGATTGAGTTA+GGG | + | chr4_1:6796027-6796046 | Msa0532600:CDS | 35.0% | |
| AAATGCTGAGATTGAGTTAG+GGG | + | chr4_1:6796028-6796047 | Msa0532600:CDS | 35.0% | |
| GCAAGTAGACGTCATAAATC+TGG | + | chr4_1:6795051-6795070 | Msa0532600:CDS | 40.0% | |
| ! | ATGGACTACGACTTACGTAT+TGG | - | chr4_1:6795083-6795102 | None:intergenic | 40.0% |
| ! | GATGAACTTGGTGATCTTGA+TGG | - | chr4_1:6795102-6795121 | None:intergenic | 40.0% |
| ! | TGCAGTTTTCCAAGAAATCG+TGG | + | chr4_1:6795266-6795285 | Msa0532600:intron | 40.0% |
| TTCCAAGAAATCGTGGTTAC+CGG | + | chr4_1:6795273-6795292 | Msa0532600:intron | 40.0% | |
| TTACCGGATTGTGAGGTATA+TGG | + | chr4_1:6795289-6795308 | Msa0532600:intron | 40.0% | |
| TCTGATAGCAGATGACCTAA+TGG | + | chr4_1:6795435-6795454 | Msa0532600:intron | 40.0% | |
| ! | GCAGATGACCTAATGGATAT+TGG | + | chr4_1:6795442-6795461 | Msa0532600:intron | 40.0% |
| ! | TGACCTAATGGATATTGGAG+AGG | + | chr4_1:6795447-6795466 | Msa0532600:intron | 40.0% |
| ACTTTGCAAGGGACTAAAAC+TGG | + | chr4_1:6795708-6795727 | Msa0532600:intron | 40.0% | |
| ! | CAACAATTTTCGCCACAAGA+AGG | + | chr4_1:6795792-6795811 | Msa0532600:CDS | 40.0% |
| ATAGCTCATCTTCTGCTGTA+AGG | - | chr4_1:6795845-6795864 | None:intergenic | 40.0% | |
| CCTAACTCAATCTCAGCATT+TGG | - | chr4_1:6796029-6796048 | None:intergenic | 40.0% | |
| CCAAATGCTGAGATTGAGTT+AGG | + | chr4_1:6796026-6796045 | Msa0532600:CDS | 40.0% | |
| AATGCTGAGATTGAGTTAGG+GGG | + | chr4_1:6796029-6796048 | Msa0532600:CDS | 40.0% | |
| TACTTGTCCAATGCAAACAC+AGG | + | chr4_1:6796120-6796139 | Msa0532600:CDS | 40.0% | |
| GCAAGTAGACGTCATAAATC+TGG | + | chr4_1:6795051-6795070 | Msa0532600:CDS | 40.0% | |
| ! | ATGGACTACGACTTACGTAT+TGG | - | chr4_1:6795083-6795102 | None:intergenic | 40.0% |
| ! | GATGAACTTGGTGATCTTGA+TGG | - | chr4_1:6795102-6795121 | None:intergenic | 40.0% |
| ! | TGCAGTTTTCCAAGAAATCG+TGG | + | chr4_1:6795266-6795285 | Msa0532600:intron | 40.0% |
| TTCCAAGAAATCGTGGTTAC+CGG | + | chr4_1:6795273-6795292 | Msa0532600:intron | 40.0% | |
| TTACCGGATTGTGAGGTATA+TGG | + | chr4_1:6795289-6795308 | Msa0532600:intron | 40.0% | |
| TCTGATAGCAGATGACCTAA+TGG | + | chr4_1:6795435-6795454 | Msa0532600:intron | 40.0% | |
| ! | GCAGATGACCTAATGGATAT+TGG | + | chr4_1:6795442-6795461 | Msa0532600:intron | 40.0% |
| ! | TGACCTAATGGATATTGGAG+AGG | + | chr4_1:6795447-6795466 | Msa0532600:intron | 40.0% |
| ACTTTGCAAGGGACTAAAAC+TGG | + | chr4_1:6795708-6795727 | Msa0532600:intron | 40.0% | |
| ! | CAACAATTTTCGCCACAAGA+AGG | + | chr4_1:6795792-6795811 | Msa0532600:CDS | 40.0% |
| ATAGCTCATCTTCTGCTGTA+AGG | - | chr4_1:6795845-6795864 | None:intergenic | 40.0% | |
| CCTAACTCAATCTCAGCATT+TGG | - | chr4_1:6796029-6796048 | None:intergenic | 40.0% | |
| CCAAATGCTGAGATTGAGTT+AGG | + | chr4_1:6796026-6796045 | Msa0532600:CDS | 40.0% | |
| AATGCTGAGATTGAGTTAGG+GGG | + | chr4_1:6796029-6796048 | Msa0532600:CDS | 40.0% | |
| TACTTGTCCAATGCAAACAC+AGG | + | chr4_1:6796120-6796139 | Msa0532600:CDS | 40.0% | |
| AGGGATCAGTGTTCAAACCT+TGG | - | chr4_1:6794899-6794918 | None:intergenic | 45.0% | |
| CGTCTACTTGCATCTGAACT+TGG | - | chr4_1:6795042-6795061 | None:intergenic | 45.0% | |
| ! | ACTACGACTTACGTATTGGC+GGG | - | chr4_1:6795079-6795098 | None:intergenic | 45.0% |
| GACTACGACTTACGTATTGG+CGG | - | chr4_1:6795080-6795099 | None:intergenic | 45.0% | |
| TAATGCGTGCTGTATGACGT+CGG | - | chr4_1:6795167-6795186 | None:intergenic | 45.0% | |
| TAGCATGCCCAAGCAAACAA+GGG | + | chr4_1:6795188-6795207 | Msa0532600:CDS | 45.0% | |
| ATCCGGTAACCACGATTTCT+TGG | - | chr4_1:6795278-6795297 | None:intergenic | 45.0% | |
| TGAACCAAGCTCAATAGTGC+TGG | - | chr4_1:6795381-6795400 | None:intergenic | 45.0% | |
| GAGCCTCTCCAATATCCATT+AGG | - | chr4_1:6795453-6795472 | None:intergenic | 45.0% | |
| TGGGACGTTCTCAATTGATG+AGG | + | chr4_1:6795956-6795975 | Msa0532600:CDS | 45.0% | |
| ATGCTGAGATTGAGTTAGGG+GGG | + | chr4_1:6796030-6796049 | Msa0532600:CDS | 45.0% | |
| TCCAATGCAAACACAGGTTG+CGG | + | chr4_1:6796126-6796145 | Msa0532600:CDS | 45.0% | |
| AGGGATCAGTGTTCAAACCT+TGG | - | chr4_1:6794899-6794918 | None:intergenic | 45.0% | |
| CGTCTACTTGCATCTGAACT+TGG | - | chr4_1:6795042-6795061 | None:intergenic | 45.0% | |
| ! | ACTACGACTTACGTATTGGC+GGG | - | chr4_1:6795079-6795098 | None:intergenic | 45.0% |
| GACTACGACTTACGTATTGG+CGG | - | chr4_1:6795080-6795099 | None:intergenic | 45.0% | |
| TAATGCGTGCTGTATGACGT+CGG | - | chr4_1:6795167-6795186 | None:intergenic | 45.0% | |
| TAGCATGCCCAAGCAAACAA+GGG | + | chr4_1:6795188-6795207 | Msa0532600:CDS | 45.0% | |
| ATCCGGTAACCACGATTTCT+TGG | - | chr4_1:6795278-6795297 | None:intergenic | 45.0% | |
| TGAACCAAGCTCAATAGTGC+TGG | - | chr4_1:6795381-6795400 | None:intergenic | 45.0% | |
| GAGCCTCTCCAATATCCATT+AGG | - | chr4_1:6795453-6795472 | None:intergenic | 45.0% | |
| TGGGACGTTCTCAATTGATG+AGG | + | chr4_1:6795956-6795975 | Msa0532600:CDS | 45.0% | |
| ATGCTGAGATTGAGTTAGGG+GGG | + | chr4_1:6796030-6796049 | Msa0532600:CDS | 45.0% | |
| TCCAATGCAAACACAGGTTG+CGG | + | chr4_1:6796126-6796145 | Msa0532600:CDS | 45.0% | |
| CACCAAGTTCATCGCGAAGT+AGG | + | chr4_1:6795109-6795128 | Msa0532600:CDS | 50.0% | |
| CTCCTACTTCGCGATGAACT+TGG | - | chr4_1:6795114-6795133 | None:intergenic | 50.0% | |
| GTAGCATGCCCAAGCAAACA+AGG | + | chr4_1:6795187-6795206 | Msa0532600:CDS | 50.0% | |
| ATCGTGGTTACCGGATTGTG+AGG | + | chr4_1:6795282-6795301 | Msa0532600:intron | 50.0% | |
| !! | TCAATAGTGCTGGTCGTGAG+GGG | - | chr4_1:6795371-6795390 | None:intergenic | 50.0% |
| !! | CTCAATAGTGCTGGTCGTGA+GGG | - | chr4_1:6795372-6795391 | None:intergenic | 50.0% |
| ACGACCAGCACTATTGAGCT+TGG | + | chr4_1:6795374-6795393 | Msa0532600:intron | 50.0% | |
| !! | CTCTCTGTTTCTGTGTCGGT+TGG | - | chr4_1:6795868-6795887 | None:intergenic | 50.0% |
| GATTGAGTTAGGGGGGCAAA+TGG | + | chr4_1:6796037-6796056 | Msa0532600:CDS | 50.0% | |
| TCCGCAACCTGTGTTTGCAT+TGG | - | chr4_1:6796130-6796149 | None:intergenic | 50.0% | |
| ATGCAAACACAGGTTGCGGA+TGG | + | chr4_1:6796130-6796149 | Msa0532600:CDS | 50.0% | |
| CACCAAGTTCATCGCGAAGT+AGG | + | chr4_1:6795109-6795128 | Msa0532600:CDS | 50.0% | |
| CTCCTACTTCGCGATGAACT+TGG | - | chr4_1:6795114-6795133 | None:intergenic | 50.0% | |
| GTAGCATGCCCAAGCAAACA+AGG | + | chr4_1:6795187-6795206 | Msa0532600:CDS | 50.0% | |
| ATCGTGGTTACCGGATTGTG+AGG | + | chr4_1:6795282-6795301 | Msa0532600:intron | 50.0% | |
| !! | TCAATAGTGCTGGTCGTGAG+GGG | - | chr4_1:6795371-6795390 | None:intergenic | 50.0% |
| !! | CTCAATAGTGCTGGTCGTGA+GGG | - | chr4_1:6795372-6795391 | None:intergenic | 50.0% |
| ACGACCAGCACTATTGAGCT+TGG | + | chr4_1:6795374-6795393 | Msa0532600:intron | 50.0% | |
| !! | CTCTCTGTTTCTGTGTCGGT+TGG | - | chr4_1:6795868-6795887 | None:intergenic | 50.0% |
| GATTGAGTTAGGGGGGCAAA+TGG | + | chr4_1:6796037-6796056 | Msa0532600:CDS | 50.0% | |
| TCCGCAACCTGTGTTTGCAT+TGG | - | chr4_1:6796130-6796149 | None:intergenic | 50.0% | |
| ATGCAAACACAGGTTGCGGA+TGG | + | chr4_1:6796130-6796149 | Msa0532600:CDS | 50.0% | |
| !! | CAATAGTGCTGGTCGTGAGG+GGG | - | chr4_1:6795370-6795389 | None:intergenic | 55.0% |
| !! | GCTCAATAGTGCTGGTCGTG+AGG | - | chr4_1:6795373-6795392 | None:intergenic | 55.0% |
| GGGGGGCAAATGGCTTATAG+AGG | + | chr4_1:6796047-6796066 | Msa0532600:CDS | 55.0% | |
| !! | CAATAGTGCTGGTCGTGAGG+GGG | - | chr4_1:6795370-6795389 | None:intergenic | 55.0% |
| !! | GCTCAATAGTGCTGGTCGTG+AGG | - | chr4_1:6795373-6795392 | None:intergenic | 55.0% |
| GGGGGGCAAATGGCTTATAG+AGG | + | chr4_1:6796047-6796066 | Msa0532600:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 6794887 | 6796163 | 6794887 | ID=Msa0532600;Name=Msa0532600 |
| chr4_1 | mRNA | 6794887 | 6796163 | 6794887 | ID=Msa0532600-mRNA-1;Parent=Msa0532600;Name=Msa0532600-mRNA-1;_AED=0.20;_eAED=0.22;_QI=0|0|0|0.33|1|1|3|0|189 |
| chr4_1 | exon | 6794887 | 6794900 | 6794887 | ID=Msa0532600-mRNA-1:exon:2403;Parent=Msa0532600-mRNA-1 |
| chr4_1 | exon | 6795038 | 6795219 | 6795038 | ID=Msa0532600-mRNA-1:exon:2404;Parent=Msa0532600-mRNA-1 |
| chr4_1 | exon | 6795790 | 6796163 | 6795790 | ID=Msa0532600-mRNA-1:exon:2405;Parent=Msa0532600-mRNA-1 |
| chr4_1 | CDS | 6794887 | 6794900 | 6794887 | ID=Msa0532600-mRNA-1:cds;Parent=Msa0532600-mRNA-1 |
| chr4_1 | CDS | 6795038 | 6795219 | 6795038 | ID=Msa0532600-mRNA-1:cds;Parent=Msa0532600-mRNA-1 |
| chr4_1 | CDS | 6795790 | 6796163 | 6795790 | ID=Msa0532600-mRNA-1:cds;Parent=Msa0532600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
