AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0063540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0063540 MtrunA17_Chr1g0165011 94.086 372 8 2 1 359 1 371 0.0 716
Msa0063540 MtrunA17_Chr8g0375751 67.898 352 93 5 9 359 7 339 3.97e-165 468
Msa0063540 MtrunA17_Chr6g0479511 49.422 346 134 5 39 359 15 344 5.78e-112 331
Msa0063540 MtrunA17_Chr7g0263111 40.642 374 170 8 10 359 11 356 9.05e-82 256
Msa0063540 MtrunA17_Chr6g0452181 42.492 313 158 9 63 359 55 361 3.48e-73 234
Msa0063540 MtrunA17_Chr8g0382571 55.208 192 80 2 171 359 219 407 3.23e-64 211
Msa0063540 MtrunA17_Chr8g0382571 54.795 73 32 1 62 134 37 108 3.20e-17 82.8
Msa0063540 MtrunA17_Chr8g0355021 53.368 193 83 3 171 359 233 422 8.81e-64 210
Msa0063540 MtrunA17_Chr8g0355021 38.261 115 64 2 20 134 24 131 1.25e-15 77.8
Msa0063540 MtrunA17_Chr1g0185281 54.167 192 82 2 171 359 294 482 1.24e-63 212
Msa0063540 MtrunA17_Chr1g0185281 55.263 76 33 1 59 134 87 161 1.33e-18 87.0
Msa0063540 MtrunA17_Chr5g0394901 53.125 192 84 2 171 359 360 548 6.21e-63 211
Msa0063540 MtrunA17_Chr5g0394901 54.667 75 33 1 60 134 90 163 1.49e-17 84.0
Msa0063540 MtrunA17_Chr1g0205121 53.125 192 84 2 171 359 321 509 1.71e-62 209
Msa0063540 MtrunA17_Chr1g0205121 41.667 120 57 4 24 134 46 161 2.96e-18 86.3
Msa0063540 MtrunA17_Chr7g0260081 52.083 192 86 2 171 359 294 482 3.01e-60 202
Msa0063540 MtrunA17_Chr7g0260081 36.538 156 74 4 3 134 7 161 4.46e-18 85.5
Msa0063540 MtrunA17_Chr6g0466801 54.497 189 80 2 171 359 375 557 3.78e-60 204
Msa0063540 MtrunA17_Chr6g0466801 40.187 107 53 3 62 158 96 201 3.00e-16 80.1
Msa0063540 MtrunA17_Chr1g0201271 53.757 173 79 1 171 343 377 548 3.02e-58 199
Msa0063540 MtrunA17_Chr1g0201271 38.843 121 65 4 20 135 56 172 1.92e-14 74.7
Msa0063540 MtrunA17_Chr4g0054951 49.735 189 92 1 171 359 316 501 1.72e-54 187
Msa0063540 MtrunA17_Chr4g0054951 35.374 147 79 3 4 138 7 149 1.99e-16 80.5
Msa0063540 MtrunA17_Chr4g0054941 48.148 189 95 1 171 359 316 501 1.54e-53 185
Msa0063540 MtrunA17_Chr4g0054941 37.333 150 77 3 1 137 1 146 3.13e-19 89.0
Msa0063540 MtrunA17_Chr5g0400311 49.735 189 92 1 171 359 373 558 5.60e-53 185
Msa0063540 MtrunA17_Chr5g0400311 46.753 77 40 1 62 138 104 179 3.81e-16 79.7
Msa0063540 MtrunA17_Chr1g0189231 26.230 366 198 13 24 359 494 817 6.68e-25 106
Msa0063540 MtrunA17_Chr1g0154491 36.552 145 81 8 199 341 143 278 1.13e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0063540 AT2G01900.3 62.535 355 122 3 7 359 7 352 7.26e-155 442
Msa0063540 AT2G01900.1 62.323 353 122 3 9 359 1 344 1.82e-153 438
Msa0063540 AT2G01900.2 60.907 353 118 4 9 359 1 335 5.56e-146 419
Msa0063540 AT2G37440.1 45.000 380 173 7 10 359 11 384 6.48e-96 293
Msa0063540 AT2G37440.3 45.000 380 173 7 10 359 11 384 6.48e-96 293
Msa0063540 AT2G37440.2 48.428 318 125 8 66 359 1 303 1.32e-85 265
Msa0063540 AT5G65090.2 55.729 192 79 2 171 359 205 393 6.27e-65 213
Msa0063540 AT5G65090.2 50.000 74 36 1 62 135 8 80 5.96e-16 79.3
Msa0063540 AT5G65090.3 55.729 192 79 2 171 359 268 456 1.92e-64 213
Msa0063540 AT5G65090.3 50.000 74 36 1 62 135 71 143 7.09e-16 79.3
Msa0063540 AT5G65090.1 55.729 192 79 2 171 359 268 456 1.92e-64 213
Msa0063540 AT5G65090.1 50.000 74 36 1 62 135 71 143 7.09e-16 79.3
Msa0063540 AT2G32010.2 53.646 192 83 2 171 359 332 520 4.31e-64 214
Msa0063540 AT2G32010.2 54.667 75 33 1 60 134 87 160 2.01e-19 90.1
Msa0063540 AT2G32010.1 53.646 192 83 2 171 359 332 520 4.31e-64 214
Msa0063540 AT2G32010.1 54.667 75 33 1 60 134 87 160 2.01e-19 90.1
Msa0063540 AT2G32010.4 53.646 192 83 2 171 359 332 520 4.31e-64 214
Msa0063540 AT2G32010.4 54.667 75 33 1 60 134 87 160 2.01e-19 90.1
Msa0063540 AT2G32010.3 53.646 192 83 2 171 359 332 520 4.31e-64 214
Msa0063540 AT2G32010.3 54.667 75 33 1 60 134 87 160 2.01e-19 90.1
Msa0063540 AT1G05470.2 53.125 192 84 2 171 359 355 543 7.56e-64 214
Msa0063540 AT1G05470.2 54.545 77 34 1 60 136 88 163 1.46e-19 90.5
Msa0063540 AT1G05470.1 53.125 192 84 2 171 359 355 543 7.56e-64 214
Msa0063540 AT1G05470.1 54.545 77 34 1 60 136 88 163 1.46e-19 90.5
Msa0063540 AT5G04980.4 51.562 192 88 2 171 359 163 352 3.14e-61 202
Msa0063540 AT3G63240.2 54.167 192 82 2 171 359 284 472 5.93e-61 205
Msa0063540 AT3G63240.2 58.571 70 28 1 65 134 89 157 8.68e-18 85.1
Msa0063540 AT3G63240.1 54.167 192 82 2 171 359 284 472 5.93e-61 205
Msa0063540 AT3G63240.1 58.571 70 28 1 65 134 89 157 8.68e-18 85.1
Msa0063540 AT5G04980.1 51.562 192 88 2 171 359 198 387 1.21e-60 201
Msa0063540 AT5G04980.1 52.941 68 31 1 62 129 7 73 1.13e-14 75.1
Msa0063540 AT5G04980.3 51.562 192 88 2 171 359 198 387 1.21e-60 201
Msa0063540 AT5G04980.3 52.941 68 31 1 62 129 7 73 1.13e-14 75.1
Msa0063540 AT5G04980.2 51.562 192 88 2 171 359 227 416 1.56e-60 202
Msa0063540 AT5G04980.2 45.556 90 42 2 40 129 20 102 9.91e-15 75.5
Msa0063540 AT1G34120.5 50.286 175 85 2 171 343 188 362 9.75e-56 188
Msa0063540 AT4G18010.2 48.148 189 95 1 171 359 395 580 2.41e-54 188
Msa0063540 AT4G18010.2 56.338 71 30 1 65 135 112 181 7.59e-17 82.4
Msa0063540 AT1G34120.1 50.286 175 85 2 171 343 339 513 2.59e-54 188
Msa0063540 AT1G34120.1 46.053 76 40 1 60 135 97 171 4.26e-15 77.0
Msa0063540 AT1G34120.2 50.286 175 85 2 171 343 343 517 2.82e-54 188
Msa0063540 AT1G34120.2 46.053 76 40 1 60 135 101 175 4.48e-15 77.0
Msa0063540 AT4G18010.1 48.148 189 95 1 171 359 395 580 9.63e-54 187
Msa0063540 AT4G18010.1 56.338 71 30 1 65 135 112 181 9.18e-17 82.0
Msa0063540 AT1G71710.2 48.677 189 92 1 171 359 405 588 3.78e-53 186
Msa0063540 AT1G71710.2 47.126 87 41 2 49 135 108 189 1.36e-17 84.7
Msa0063540 AT1G71710.1 48.677 189 92 1 171 359 414 597 5.21e-53 186
Msa0063540 AT1G71710.1 47.126 87 41 2 49 135 117 198 1.34e-17 84.7
Msa0063540 AT1G34120.3 50.286 175 84 3 171 343 343 516 1.71e-52 183
Msa0063540 AT1G34120.3 46.053 76 40 1 60 135 101 175 4.27e-15 77.0
Msa0063540 AT1G34120.4 50.735 136 65 2 171 304 339 474 1.08e-38 144
Msa0063540 AT1G34120.4 46.053 76 40 1 60 135 97 171 3.88e-15 76.6
Msa0063540 AT1G65580.2 28.274 336 173 11 58 359 266 567 2.05e-28 117
Msa0063540 AT1G65580.1 28.274 336 173 11 58 359 532 833 2.47e-28 117
Msa0063540 AT1G05630.2 24.798 371 202 11 24 359 538 866 4.86e-24 104
Msa0063540 AT1G05630.3 24.798 371 202 11 24 359 538 866 4.95e-24 103
Msa0063540 AT1G47510.1 25.965 285 139 10 66 341 56 277 5.26e-17 81.3
Msa0063540 AT1G47510.4 34.459 148 82 5 196 341 81 215 6.62e-17 80.1
Msa0063540 AT1G05630.1 24.291 247 142 8 24 262 538 747 1.79e-11 66.2

Find 56 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTGATATCTATGTATT+TGG 0.059903 1_2:+24130281 Msa0063540:CDS
TGGATCACTATGATCATTAA+TGG 0.196914 1_2:-24130013 None:intergenic
TCATGATCAAGAATCTTTCT+TGG 0.273995 1_2:-24131716 None:intergenic
ACTATGATCATTAATGGATT+TGG 0.307634 1_2:-24130007 None:intergenic
TGTGGCATCATGGGCTTCTT+AGG 0.310282 1_2:+24130991 Msa0063540:CDS
GTGTGCAGTCATCTAGCTTC+TGG 0.323109 1_2:+24131602 Msa0063540:CDS
ATAGTAAGATTTCAACAAAA+TGG 0.329956 1_2:+24130707 Msa0063540:CDS
AGTAAGCGTGTGGTTTCTTC+TGG 0.340130 1_2:-24132529 None:intergenic
AATACATTTGATGCATTTAG+TGG 0.341530 1_2:-24130673 None:intergenic
CCTTTGATATCTATGTATTT+GGG 0.345233 1_2:+24130282 Msa0063540:CDS
GTTGAATATTGAGGATTTGT+TGG 0.347566 1_2:+24130244 Msa0063540:CDS
TTAAATTCAGATGAGTACTA+TGG 0.357661 1_2:+24133352 Msa0063540:CDS
TTGTTATCATGGAATGAAAA+AGG 0.358187 1_2:+24133378 Msa0063540:CDS
ACTAAATGCATCAAATGTAT+TGG 0.366321 1_2:+24130675 Msa0063540:CDS
AAATTCAAAATAGTGCCTTT+AGG 0.373732 1_2:-24131692 None:intergenic
GGTTATGTGGCCTGCATTAG+TGG 0.381333 1_2:+24129873 Msa0063540:intron
CTAAATGCATCAAATGTATT+GGG 0.392848 1_2:+24130676 Msa0063540:CDS
TCACTATTGGTAGACAATAA+AGG 0.393933 1_2:-24129964 None:intergenic
TCATATTTGTTTAGGTTATG+TGG 0.397995 1_2:+24129860 Msa0063540:intron
AGATAATTGATCATCACTAT+TGG 0.426716 1_2:-24129977 None:intergenic
TCAATATTCAACTCTTCATC+TGG 0.427921 1_2:-24130233 None:intergenic
ATGTGTTGGATGTGGCATCA+TGG 0.454248 1_2:+24130981 Msa0063540:CDS
GCTGATTTACACTGCTGAGC+TGG 0.467900 1_2:-24130853 None:intergenic
TTGTATCATTAGCAAGCAAA+TGG 0.470095 1_2:+24130891 Msa0063540:intron
TGCAGTCATGTAATATTGCT+TGG 0.474593 1_2:+24132481 Msa0063540:intron
TTAGAAATGCTTTGAACAAG+AGG 0.475137 1_2:+24130740 Msa0063540:CDS
TGGCTAACAAGATACTAAAC+AGG 0.478415 1_2:+24129893 Msa0063540:CDS
TACTATGGATGTTGTTATCA+TGG 0.480907 1_2:+24133367 Msa0063540:CDS
TTTGTTAGTACATGGAACAT+AGG 0.487262 1_2:+24130200 Msa0063540:CDS
TTCCCTATTAGAAAATGATC+AGG 0.493915 1_2:+24132573 Msa0063540:CDS
AAGAGGGAGATGAGAAGCAT+AGG 0.494296 1_2:+24131630 Msa0063540:CDS
ATTGTTGCAAAGATATTGAA+AGG 0.497320 1_2:+24130773 Msa0063540:CDS
TGTGTTGGATGTGGCATCAT+GGG 0.501040 1_2:+24130982 Msa0063540:CDS
ATCTTGTTAGCCACTAATGC+AGG 0.504357 1_2:-24129883 None:intergenic
AATGAAATTGAAGCTAAAGA+TGG 0.505405 1_2:+24133255 Msa0063540:intron
AATAAAGGATCTGTATAACT+TGG 0.514081 1_2:-24129949 None:intergenic
GCGTGTGGTTTCTTCTGGTA+GGG 0.518241 1_2:-24132524 None:intergenic
AGATGAAGAGTTGAATATTG+AGG 0.521657 1_2:+24130235 Msa0063540:CDS
TCTAGCTTCTGGAGGAAAAG+AGG 0.527516 1_2:+24131613 Msa0063540:CDS
GATGTCTAATGAAAGGACTA+AGG 0.530564 1_2:-24130948 None:intergenic
ATCATTAGCAAGCAAATGGT+TGG 0.540433 1_2:+24130895 Msa0063540:intron
AAGATACTAAACAGGAGACT+TGG 0.544058 1_2:+24129901 Msa0063540:CDS
CTAGCTTCTGGAGGAAAAGA+GGG 0.552266 1_2:+24131614 Msa0063540:CDS
CATCCATGTGTCTCATGTGT+TGG 0.554145 1_2:+24130967 Msa0063540:CDS
CTAAAGATGGAGCTAGAGAG+TGG 0.565209 1_2:+24133268 Msa0063540:CDS
AGCGTGTGGTTTCTTCTGGT+AGG 0.570373 1_2:-24132525 None:intergenic
TGTGTCTCATGTGTTGGATG+TGG 0.571735 1_2:+24130973 Msa0063540:CDS
CATGGGCTTCTTAGGCAACA+AGG 0.587041 1_2:+24130999 Msa0063540:CDS
CCCAAATACATAGATATCAA+AGG 0.590421 1_2:-24130282 None:intergenic
TTGTTGCAAAGATATTGAAA+GGG 0.593223 1_2:+24130774 Msa0063540:CDS
GTTAGTACATGGAACATAGG+TGG 0.598161 1_2:+24130203 Msa0063540:CDS
ACACATGGATGTCTAATGAA+AGG 0.608846 1_2:-24130955 None:intergenic
CATCCAACACATGAGACACA+TGG 0.611478 1_2:-24130970 None:intergenic
GATTTGAAGAATATTTGTCA+AGG 0.612327 1_2:+24130823 Msa0063540:CDS
TGCAGTCATCTAGCTTCTGG+AGG 0.612853 1_2:+24131605 Msa0063540:CDS
CAAAGAAGAGATCACCAGCA+TGG 0.665821 1_2:+24133404 Msa0063540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr1_2:24130574-24130593 None:intergenic 0.0%
!!! AATTTTTTTTATCAACAAAT+TGG - chr1_2:24129811-24129830 None:intergenic 10.0%
!! TATATTTATCATATTTGTTT+AGG + chr1_2:24129852-24129871 Msa0063540:intron 10.0%
!! TATATATATATATGTATGTA+TGG + chr1_2:24130590-24130609 Msa0063540:intron 10.0%
!!! TTGTTTTTTTTTTTTTTTTG+AGG + chr1_2:24132054-24132073 Msa0063540:intron 10.0%
!!! TGTATTATTTTTTTTTTTGA+AGG + chr1_2:24132351-24132370 Msa0063540:intron 10.0%
!!! GTATTATTTTTTTTTTTGAA+GGG + chr1_2:24132352-24132371 Msa0063540:intron 10.0%
!! TAAAATATAATATATAAGCA+TGG - chr1_2:24132627-24132646 None:intergenic 10.0%
!!! AAAAGTGAATATTTTTTATT+AGG + chr1_2:24133132-24133151 Msa0063540:intron 10.0%
!!! AAAGTGAATATTTTTTATTA+GGG + chr1_2:24133133-24133152 Msa0063540:intron 10.0%
!! AAAAATTAAATTTCTTACCA+AGG + chr1_2:24129824-24129843 Msa0063540:intron 15.0%
!! AAAATTAAATTTCTTACCAA+GGG + chr1_2:24129825-24129844 Msa0063540:intron 15.0%
!! GAAATTGAAATATTGAAAAA+TGG + chr1_2:24130340-24130359 Msa0063540:intron 15.0%
!! AAAAAAATTATCACTATGTT+TGG + chr1_2:24130442-24130461 Msa0063540:intron 15.0%
!! TTCAATTTAAGCATTATTAT+TGG + chr1_2:24131936-24131955 Msa0063540:intron 15.0%
!!! CTAATGATATAGTTTAATTT+TGG - chr1_2:24132006-24132025 None:intergenic 15.0%
!! ATGTATGTTAAAGTAAATTT+AGG - chr1_2:24132397-24132416 None:intergenic 15.0%
!!! TTACTGAATTTTTTTCAAAT+GGG + chr1_2:24133042-24133061 Msa0063540:intron 15.0%
!! TATCAATAATTCTTTATACT+AGG - chr1_2:24133163-24133182 None:intergenic 15.0%
!! TGAATTTAAAAAATACTTGT+AGG - chr1_2:24133341-24133360 None:intergenic 15.0%
!! AAATGAAAGAAAATATGAGA+AGG - chr1_2:24129772-24129791 None:intergenic 20.0%
!!! TTTTTTTGGTCTCAAAATTT+TGG + chr1_2:24130499-24130518 Msa0063540:intron 20.0%
!!! AATTAATCTTTTTACAATCC+AGG + chr1_2:24130635-24130654 Msa0063540:intron 20.0%
!! ATAGTAAGATTTCAACAAAA+TGG + chr1_2:24130707-24130726 Msa0063540:CDS 20.0%
!! AAGTAAGATGAATTAAAAGT+GGG - chr1_2:24131039-24131058 None:intergenic 20.0%
!! AAAGTAAGATGAATTAAAAG+TGG - chr1_2:24131040-24131059 None:intergenic 20.0%
!! GAATCCAACATATTAAAATT+TGG + chr1_2:24131430-24131449 Msa0063540:intron 20.0%
!!! TAGCTTTCCTTTTAATAATT+AGG + chr1_2:24131812-24131831 Msa0063540:intron 20.0%
!! AAAGGAACCTAATTATTAAA+AGG - chr1_2:24131822-24131841 None:intergenic 20.0%
!!! ATGATATAGTTTAATTTTGG+CGG - chr1_2:24132003-24132022 None:intergenic 20.0%
!! TGTTATTCAGTAATTAAAAG+AGG - chr1_2:24132255-24132274 None:intergenic 20.0%
!! AAGTTAATTTAAGCATAAGT+CGG - chr1_2:24132297-24132316 None:intergenic 20.0%
!! TGTTAAATTTCATGTAGAAT+AGG + chr1_2:24132716-24132735 Msa0063540:intron 20.0%
!!! CTTACTGAATTTTTTTCAAA+TGG + chr1_2:24133041-24133060 Msa0063540:intron 20.0%
!!! TTTTCTCGAAAATACTTAAA+TGG - chr1_2:24133116-24133135 None:intergenic 20.0%
!! TTTAAAAAATACTTGTAGGT+TGG - chr1_2:24133337-24133356 None:intergenic 20.0%
! ATGATAAATATACAAACCCT+TGG - chr1_2:24129844-24129863 None:intergenic 25.0%
!! TCATATTTGTTTAGGTTATG+TGG + chr1_2:24129860-24129879 Msa0063540:intron 25.0%
! AATAAAGGATCTGTATAACT+TGG - chr1_2:24129952-24129971 None:intergenic 25.0%
! AGATAATTGATCATCACTAT+TGG - chr1_2:24129980-24129999 None:intergenic 25.0%
!!! ACTATGATCATTAATGGATT+TGG - chr1_2:24130010-24130029 None:intergenic 25.0%
! TCCTTTGATATCTATGTATT+TGG + chr1_2:24130281-24130300 Msa0063540:CDS 25.0%
! CCTTTGATATCTATGTATTT+GGG + chr1_2:24130282-24130301 Msa0063540:CDS 25.0%
!!! AGATGGATTTCACATTTTTT+TGG + chr1_2:24130485-24130504 Msa0063540:intron 25.0%
! AATACATTTGATGCATTTAG+TGG - chr1_2:24130676-24130695 None:intergenic 25.0%
! ACTAAATGCATCAAATGTAT+TGG + chr1_2:24130675-24130694 Msa0063540:CDS 25.0%
! CTAAATGCATCAAATGTATT+GGG + chr1_2:24130676-24130695 Msa0063540:CDS 25.0%
! ATTGTTGCAAAGATATTGAA+AGG + chr1_2:24130773-24130792 Msa0063540:CDS 25.0%
! TTGTTGCAAAGATATTGAAA+GGG + chr1_2:24130774-24130793 Msa0063540:CDS 25.0%
! GATTTGAAGAATATTTGTCA+AGG + chr1_2:24130823-24130842 Msa0063540:CDS 25.0%
! TGATACAATGAAAATCTTGT+GGG - chr1_2:24130879-24130898 None:intergenic 25.0%
! ATGATACAATGAAAATCTTG+TGG - chr1_2:24130880-24130899 None:intergenic 25.0%
! AGTAAGATGAATTAAAAGTG+GGG - chr1_2:24131038-24131057 None:intergenic 25.0%
! TCTATATACGTGAATCTAAT+TGG - chr1_2:24131145-24131164 None:intergenic 25.0%
!!! CCAACCAAATTTTAATATGT+TGG - chr1_2:24131437-24131456 None:intergenic 25.0%
! CCAACATATTAAAATTTGGT+TGG + chr1_2:24131434-24131453 Msa0063540:intron 25.0%
!! ATGTTGCTGAAATATTTTCT+AGG + chr1_2:24131660-24131679 Msa0063540:CDS 25.0%
! AAATTCAAAATAGTGCCTTT+AGG - chr1_2:24131695-24131714 None:intergenic 25.0%
! AAGCTAAAACCAAATTATTG+AGG - chr1_2:24131798-24131817 None:intergenic 25.0%
! AAATTGTTGTACTACTATAG+TGG + chr1_2:24132087-24132106 Msa0063540:intron 25.0%
! AATTGTTGTACTACTATAGT+GGG + chr1_2:24132088-24132107 Msa0063540:intron 25.0%
!!! TTAGCTTGTTTTACTCTATT+TGG - chr1_2:24132157-24132176 None:intergenic 25.0%
! AAGAATAAAACACCTTAAAG+AGG + chr1_2:24132186-24132205 Msa0063540:intron 25.0%
! ATTAACTTTAGCAAACATGT+TGG + chr1_2:24132309-24132328 Msa0063540:intron 25.0%
!! TACCTGATCATTTTCTAATA+GGG - chr1_2:24132578-24132597 None:intergenic 25.0%
!! ATACCTGATCATTTTCTAAT+AGG - chr1_2:24132579-24132598 None:intergenic 25.0%
! AATTACACATAGAAAAGTTG+AGG + chr1_2:24132911-24132930 Msa0063540:intron 25.0%
! AAATGGTCACAAGTATAAAT+TGG - chr1_2:24133099-24133118 None:intergenic 25.0%
! ATACTTCCTAGTAGATTTAT+AGG + chr1_2:24133180-24133199 Msa0063540:intron 25.0%
! ATTTCTCCTATAAATCTACT+AGG - chr1_2:24133189-24133208 None:intergenic 25.0%
! TATAGGAGAAATTAAAGACT+TGG + chr1_2:24133197-24133216 Msa0063540:intron 25.0%
! AATGAAATTGAAGCTAAAGA+TGG + chr1_2:24133255-24133274 Msa0063540:intron 25.0%
! TTAAATTCAGATGAGTACTA+TGG + chr1_2:24133352-24133371 Msa0063540:CDS 25.0%
! TTGTTATCATGGAATGAAAA+AGG + chr1_2:24133378-24133397 Msa0063540:CDS 25.0%
AGAAAATATGAGAAGGAAAG+TGG - chr1_2:24129765-24129784 None:intergenic 30.0%
TCACTATTGGTAGACAATAA+AGG - chr1_2:24129967-24129986 None:intergenic 30.0%
TGGATCACTATGATCATTAA+TGG - chr1_2:24130016-24130035 None:intergenic 30.0%
! TCTTCTTACTTGTACTTTTG+TGG - chr1_2:24130036-24130055 None:intergenic 30.0%
! GAAGAGTTTTTGTTAGTACA+TGG + chr1_2:24130192-24130211 Msa0063540:intron 30.0%
TTTGTTAGTACATGGAACAT+AGG + chr1_2:24130200-24130219 Msa0063540:CDS 30.0%
TCAATATTCAACTCTTCATC+TGG - chr1_2:24130236-24130255 None:intergenic 30.0%
AGATGAAGAGTTGAATATTG+AGG + chr1_2:24130235-24130254 Msa0063540:CDS 30.0%
GTTGAATATTGAGGATTTGT+TGG + chr1_2:24130244-24130263 Msa0063540:CDS 30.0%
CCCAAATACATAGATATCAA+AGG - chr1_2:24130285-24130304 None:intergenic 30.0%
! TTAGAAATGCTTTGAACAAG+AGG + chr1_2:24130740-24130759 Msa0063540:CDS 30.0%
GATACAATGAAAATCTTGTG+GGG - chr1_2:24130878-24130897 None:intergenic 30.0%
TTGTATCATTAGCAAGCAAA+TGG + chr1_2:24130891-24130910 Msa0063540:intron 30.0%
!!! TTGGTATTTTGATATCTGTG+TGG + chr1_2:24130914-24130933 Msa0063540:CDS 30.0%
!!! TGGTATTTTGATATCTGTGT+GGG + chr1_2:24130915-24130934 Msa0063540:CDS 30.0%
ATCTAATTGGACACTAATGA+AGG - chr1_2:24131132-24131151 None:intergenic 30.0%
TTAGATTAAACCAACGAATG+AGG + chr1_2:24131182-24131201 Msa0063540:intron 30.0%
TTACTATTCTGACAAATTGC+AGG + chr1_2:24131532-24131551 Msa0063540:intron 30.0%
TACTATTCTGACAAATTGCA+GGG + chr1_2:24131533-24131552 Msa0063540:intron 30.0%
TCATGATCAAGAATCTTTCT+TGG - chr1_2:24131719-24131738 None:intergenic 30.0%
! AATTATTGAGGTTGATTGGT+TGG - chr1_2:24131786-24131805 None:intergenic 30.0%
ACCAATCAACCTCAATAATT+TGG + chr1_2:24131786-24131805 Msa0063540:intron 30.0%
! ACCAAATTATTGAGGTTGAT+TGG - chr1_2:24131790-24131809 None:intergenic 30.0%
!!! CTTTGTTTTCATGATTTGGT+GGG - chr1_2:24131845-24131864 None:intergenic 30.0%
!!! ACTTTGTTTTCATGATTTGG+TGG - chr1_2:24131846-24131865 None:intergenic 30.0%
!!! AGCACTTTGTTTTCATGATT+TGG - chr1_2:24131849-24131868 None:intergenic 30.0%
TAAATCTATGGACCTCTTTA+AGG - chr1_2:24132201-24132220 None:intergenic 30.0%
! TACTTGTTGAAAAAAGAGAC+TGG + chr1_2:24132548-24132567 Msa0063540:CDS 30.0%
! ACTTGTTGAAAAAAGAGACT+GGG + chr1_2:24132549-24132568 Msa0063540:CDS 30.0%
TTCCCTATTAGAAAATGATC+AGG + chr1_2:24132573-24132592 Msa0063540:CDS 30.0%
! CTTTTTATCAAGTGCTCTAA+AGG + chr1_2:24132801-24132820 Msa0063540:intron 30.0%
TTACACACACACATCTATAA+TGG - chr1_2:24132843-24132862 None:intergenic 30.0%
TGTTCAAATAGTGTGTCAAT+AGG - chr1_2:24132957-24132976 None:intergenic 30.0%
AGTATAAATTGGACACTATC+TGG - chr1_2:24133088-24133107 None:intergenic 30.0%
TACTATGGATGTTGTTATCA+TGG + chr1_2:24133367-24133386 Msa0063540:CDS 30.0%
TGGCTAACAAGATACTAAAC+AGG + chr1_2:24129893-24129912 Msa0063540:CDS 35.0%
AAGATACTAAACAGGAGACT+TGG + chr1_2:24129901-24129920 Msa0063540:CDS 35.0%
! ATATGCTGAAAAGGTGCATA+TGG + chr1_2:24130114-24130133 Msa0063540:intron 35.0%
TAATTTCAGCACTCACTTCA+TGG + chr1_2:24130305-24130324 Msa0063540:intron 35.0%
ATCATTAGCAAGCAAATGGT+TGG + chr1_2:24130895-24130914 Msa0063540:intron 35.0%
GATGTCTAATGAAAGGACTA+AGG - chr1_2:24130951-24130970 None:intergenic 35.0%
ACACATGGATGTCTAATGAA+AGG - chr1_2:24130958-24130977 None:intergenic 35.0%
! ATTAAAAGTGGGGTTTGGTT+AGG - chr1_2:24131028-24131047 None:intergenic 35.0%
GATGAATTAAAAGTGGGGTT+TGG - chr1_2:24131033-24131052 None:intergenic 35.0%
!! TAACCTTAATCCTCTAGAGT+AGG + chr1_2:24131246-24131265 Msa0063540:intron 35.0%
TGCAACCTTGAATCAAACAA+AGG + chr1_2:24131276-24131295 Msa0063540:intron 35.0%
GCAACCTTGAATCAAACAAA+GGG + chr1_2:24131277-24131296 Msa0063540:intron 35.0%
! ATGACCCTTTGTTTGATTCA+AGG - chr1_2:24131284-24131303 None:intergenic 35.0%
CTTGAGGCATAAGTTAAGAA+AGG - chr1_2:24131318-24131337 None:intergenic 35.0%
CTTTCTTAACTTATGCCTCA+AGG + chr1_2:24131316-24131335 Msa0063540:intron 35.0%
!! AATGTTAACTTGTGTCCTTG+AGG - chr1_2:24131334-24131353 None:intergenic 35.0%
GAGGATGCAGGTTAAAAAAA+GGG - chr1_2:24131358-24131377 None:intergenic 35.0%
AGAGGATGCAGGTTAAAAAA+AGG - chr1_2:24131359-24131378 None:intergenic 35.0%
TTCAACAGTTGAGATTCAGT+TGG - chr1_2:24131391-24131410 None:intergenic 35.0%
TAATATGTTGGATTCGAGCT+AGG - chr1_2:24131425-24131444 None:intergenic 35.0%
!! TCTAGGACAACTTTTCCTAA+AGG + chr1_2:24131677-24131696 Msa0063540:CDS 35.0%
!!! TTTTCATGATTTGGTGGGAA+AGG - chr1_2:24131840-24131859 None:intergenic 35.0%
TGCAGTCATGTAATATTGCT+TGG + chr1_2:24132481-24132500 Msa0063540:intron 35.0%
!! TTTTTCAACAAGTAAGCGTG+TGG - chr1_2:24132542-24132561 None:intergenic 35.0%
! GAGAGTGGACAAATTTTAAG+AGG + chr1_2:24133283-24133302 Msa0063540:CDS 35.0%
!! GTGGACAAATTTTAAGAGGT+TGG + chr1_2:24133287-24133306 Msa0063540:CDS 35.0%
!! ATTTTAAGAGGTTGGCATGA+AGG + chr1_2:24133295-24133314 Msa0063540:CDS 35.0%
ATCTTGTTAGCCACTAATGC+AGG - chr1_2:24129886-24129905 None:intergenic 40.0%
ATGTGCAGCATATGCTGAAA+AGG + chr1_2:24130105-24130124 Msa0063540:intron 40.0%
! GAAAAGGTGCATATGGTTTG+TGG + chr1_2:24130121-24130140 Msa0063540:intron 40.0%
GTTAGTACATGGAACATAGG+TGG + chr1_2:24130203-24130222 Msa0063540:CDS 40.0%
!! CACTTCATGGTTTTCTAGCA+TGG + chr1_2:24130318-24130337 Msa0063540:intron 40.0%
TCACTATGTTTGGCAACTCT+AGG + chr1_2:24130452-24130471 Msa0063540:intron 40.0%
!! CTCTAGGACAGAATTAGAGA+TGG + chr1_2:24130468-24130487 Msa0063540:intron 40.0%
TGGCACAATTTCTTGAAACC+TGG - chr1_2:24130656-24130675 None:intergenic 40.0%
! GATCCTACTCTAGAGGATTA+AGG - chr1_2:24131252-24131271 None:intergenic 40.0%
TTCAGTTGGACAGATTTCAG+AGG - chr1_2:24131377-24131396 None:intergenic 40.0%
! ATTGAGGTTGATTGGTTGGA+CGG - chr1_2:24131782-24131801 None:intergenic 40.0%
CAGAAGGACAAATTCAAAGC+TGG - chr1_2:24131968-24131987 None:intergenic 40.0%
TTGTCCTTCTGCTAGATTGA+AGG + chr1_2:24131977-24131996 Msa0063540:intron 40.0%
AGCATGGATACATGCATACA+TGG - chr1_2:24132611-24132630 None:intergenic 40.0%
CATCCATGTGTCTCATGTGT+TGG + chr1_2:24130967-24130986 Msa0063540:CDS 45.0%
CATCCAACACATGAGACACA+TGG - chr1_2:24130973-24130992 None:intergenic 45.0%
TGTGTCTCATGTGTTGGATG+TGG + chr1_2:24130973-24130992 Msa0063540:CDS 45.0%
ATGTGTTGGATGTGGCATCA+TGG + chr1_2:24130981-24131000 Msa0063540:CDS 45.0%
TGTGTTGGATGTGGCATCAT+GGG + chr1_2:24130982-24131001 Msa0063540:CDS 45.0%
ACCAACGAATGAGGTGAAGT+AGG + chr1_2:24131191-24131210 Msa0063540:intron 45.0%
TCCTACTTCACCTCATTCGT+TGG - chr1_2:24131195-24131214 None:intergenic 45.0%
GCAATTCGATCCTACTCTAG+AGG - chr1_2:24131259-24131278 None:intergenic 45.0%
! TCTAGCTTCTGGAGGAAAAG+AGG + chr1_2:24131613-24131632 Msa0063540:CDS 45.0%
! CTAGCTTCTGGAGGAAAAGA+GGG + chr1_2:24131614-24131633 Msa0063540:CDS 45.0%
! AAGAGGGAGATGAGAAGCAT+AGG + chr1_2:24131630-24131649 Msa0063540:CDS 45.0%
AGTAAGCGTGTGGTTTCTTC+TGG - chr1_2:24132532-24132551 None:intergenic 45.0%
GTGTGTGTGTAAACACAGAG+AGG + chr1_2:24132851-24132870 Msa0063540:intron 45.0%
CTAAAGATGGAGCTAGAGAG+TGG + chr1_2:24133268-24133287 Msa0063540:CDS 45.0%
!! TTTAATTATAAATAAATCTA+TGG - chr1_2:24132213-24132232 None:intergenic 5.0%
GGTTATGTGGCCTGCATTAG+TGG + chr1_2:24129873-24129892 Msa0063540:intron 50.0%
! GCTGATTTACACTGCTGAGC+TGG - chr1_2:24130856-24130875 None:intergenic 50.0%
TGTGGCATCATGGGCTTCTT+AGG + chr1_2:24130991-24131010 Msa0063540:CDS 50.0%
CATGGGCTTCTTAGGCAACA+AGG + chr1_2:24130999-24131018 Msa0063540:CDS 50.0%
GGACAGATTTCAGAGGATGC+AGG - chr1_2:24131370-24131389 None:intergenic 50.0%
ACCGACTGCACATAGGATCT+AGG + chr1_2:24131457-24131476 Msa0063540:intron 50.0%
CCCTAGATCCTATGTGCAGT+CGG - chr1_2:24131461-24131480 None:intergenic 50.0%
CCGACTGCACATAGGATCTA+GGG + chr1_2:24131458-24131477 Msa0063540:intron 50.0%
! TGCACATAGGATCTAGGGCA+TGG + chr1_2:24131463-24131482 Msa0063540:intron 50.0%
! GTGTGCAGTCATCTAGCTTC+TGG + chr1_2:24131602-24131621 Msa0063540:CDS 50.0%
! TGCAGTCATCTAGCTTCTGG+AGG + chr1_2:24131605-24131624 Msa0063540:CDS 50.0%
GCGTGTGGTTTCTTCTGGTA+GGG - chr1_2:24132527-24132546 None:intergenic 50.0%
AGCGTGTGGTTTCTTCTGGT+AGG - chr1_2:24132528-24132547 None:intergenic 50.0%
TGGTTGGACCGACTGCACAT+AGG + chr1_2:24131450-24131469 Msa0063540:intron 55.0%
GCGGCCTTCAATCTAGCAGA+AGG - chr1_2:24131984-24132003 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 24129734 24133423 24129734 ID=Msa0063540;Name=Msa0063540
chr1_2 mRNA 24129734 24133423 24129734 ID=Msa0063540-mRNA-1;Parent=Msa0063540;Name=Msa0063540-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|0.71|0.62|8|0|359
chr1_2 exon 24129734 24129754 24129734 ID=Msa0063540-mRNA-1:exon:8659;Parent=Msa0063540-mRNA-1
chr1_2 exon 24129874 24130046 24129874 ID=Msa0063540-mRNA-1:exon:8660;Parent=Msa0063540-mRNA-1
chr1_2 exon 24130196 24130303 24130196 ID=Msa0063540-mRNA-1:exon:8661;Parent=Msa0063540-mRNA-1
chr1_2 exon 24130657 24130863 24130657 ID=Msa0063540-mRNA-1:exon:8662;Parent=Msa0063540-mRNA-1
chr1_2 exon 24130903 24131020 24130903 ID=Msa0063540-mRNA-1:exon:8663;Parent=Msa0063540-mRNA-1
chr1_2 exon 24131554 24131738 24131554 ID=Msa0063540-mRNA-1:exon:8664;Parent=Msa0063540-mRNA-1
chr1_2 exon 24132486 24132594 24132486 ID=Msa0063540-mRNA-1:exon:8665;Parent=Msa0063540-mRNA-1
chr1_2 exon 24133268 24133423 24133268 ID=Msa0063540-mRNA-1:exon:8666;Parent=Msa0063540-mRNA-1
chr1_2 CDS 24129734 24129754 24129734 ID=Msa0063540-mRNA-1:cds;Parent=Msa0063540-mRNA-1
chr1_2 CDS 24129874 24130046 24129874 ID=Msa0063540-mRNA-1:cds;Parent=Msa0063540-mRNA-1
chr1_2 CDS 24130196 24130303 24130196 ID=Msa0063540-mRNA-1:cds;Parent=Msa0063540-mRNA-1
chr1_2 CDS 24130657 24130863 24130657 ID=Msa0063540-mRNA-1:cds;Parent=Msa0063540-mRNA-1
chr1_2 CDS 24130903 24131020 24130903 ID=Msa0063540-mRNA-1:cds;Parent=Msa0063540-mRNA-1
chr1_2 CDS 24131554 24131738 24131554 ID=Msa0063540-mRNA-1:cds;Parent=Msa0063540-mRNA-1
chr1_2 CDS 24132486 24132594 24132486 ID=Msa0063540-mRNA-1:cds;Parent=Msa0063540-mRNA-1
chr1_2 CDS 24133268 24133423 24133268 ID=Msa0063540-mRNA-1:cds;Parent=Msa0063540-mRNA-1
Gene Sequence

>Msa0063540

ATGACTAGAAAACTAGCAGAAGTTATGTGGCCTGCATTAGTGGCTAACAAGATACTAAACAGGAGACTTGGAAGCAGAAATTTCATAGCAGATTATCCAAGTTATACAGATCCTTTATTGTCTACCAATAGTGATGATCAATTATCTCTAAGCACCAAATCCATTAATGATCATAGTGATCCACAAAAGTACAAAGTTTTTGTTAGTACATGGAACATAGGTGGAATTGCACCAGATGAAGAGTTGAATATTGAGGATTTGTTGGAGACATGCAGCAAGTCCTTTGATATCTATGTATTTGGGTTTCAAGAAATTGTGCCACTAAATGCATCAAATGTATTGGGATCAGAAGATAGTAAGATTTCAACAAAATGGAATTCTTTAATTAGAAATGCTTTGAACAAGAGGACACATCACTATTGTTGCAAAGATATTGAAAGGGATGATGATGATGATAATATAGAGCAAGATTTGAAGAATATTTGTCAAGGAAATATTCCAGCTCAGCACAAGCAAATGGTTGGTATTTTGATATCTGTGTGGGTTAGAAGTGACCTTAGTCCTTTCATTAGACATCCATGTGTCTCATGTGTTGGATGTGGCATCATGGGCTTCTTAGGCAACAAGGGTTCTGTATCTGTGAGATTTCTATTACATGAAACAAGCTTCTGCTTTGTGTGCAGTCATCTAGCTTCTGGAGGAAAAGAGGGAGATGAGAAGCATAGGAATTCTAATGTTGCTGAAATATTTTCTAGGACAACTTTTCCTAAAGGCACTATTTTGAATTTACCAAGAAAGATTCTTGATCATGATCATGTAATATTGCTTGGAGATTTAAATTACAGAATATCCCTACCAGAAGAAACCACACGCTTACTTGTTGAAAAAAGAGACTGGGATTCCCTATTAGAAAATGATCAGCTAAAGATGGAGCTAGAGAGTGGACAAATTTTAAGAGGTTGGCATGAAGGAGCAATTAAATTTGCTCCAACCTACAAGTATTTTTTAAATTCAGATGAGTACTATGGATGTTGTTATCATGGAATGAAAAAGGCAGCAAAGAAGAGATCACCAGCA

Protein sequence

>Msa0063540

MTRKLAEVMWPALVANKILNRRLGSRNFIADYPSYTDPLLSTNSDDQLSLSTKSINDHSDPQKYKVFVSTWNIGGIAPDEELNIEDLLETCSKSFDIYVFGFQEIVPLNASNVLGSEDSKISTKWNSLIRNALNKRTHHYCCKDIERDDDDDNIEQDLKNICQGNIPAQHKQMVGILISVWVRSDLSPFIRHPCVSCVGCGIMGFLGNKGSVSVRFLLHETSFCFVCSHLASGGKEGDEKHRNSNVAEIFSRTTFPKGTILNLPRKILDHDHVILLGDLNYRISLPEETTRLLVEKRDWDSLLENDQLKMELESGQILRGWHEGAIKFAPTYKYFLNSDEYYGCCYHGMKKAAKKRSPA