AlfalfaGEDB | Msa0391270

M. sativa cultivar zhongmu-4 / Msa0391270

KEGG: K08237
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0006805 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0009056 GO:0009058 GO:0009410 GO:0009628 GO:0009636 GO:0009651 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016740 GO:0016757 GO:0016758 GO:0019438 GO:0019748 GO:0035251 GO:0042178 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046527 GO:0050896 GO:0051716 GO:0070887 GO:0071466 GO:0071704 GO:0080043 GO:0080044 GO:1901360 GO:1901362 GO:1901576
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391270	XP_003629448.2	95.117	471	23	0	1	471	1	471	0.0	917

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391270	sp\|Q9AR73\|HQGT_RAUSE	44.681	470	246	9	7	469	4	466	2.69e-140	414

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391270	A0A396GPP2	95.117	471	23	0	1	471	1	471	0.0	917

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010150	Msa0391270	0.828948	6.767327e-55	-8.615850e-47
Msa0011010	Msa0391270	0.809654	1.700368e-50	-8.615850e-47
Msa0011040	Msa0391270	0.806696	7.256256e-50	-8.615850e-47
Msa0011100	Msa0391270	-0.800183	1.624129e-48	-8.615850e-47
Msa0013270	Msa0391270	0.802000	6.904729e-49	-8.615850e-47
Msa0014590	Msa0391270	0.802750	4.836568e-49	-8.615850e-47
Msa0017710	Msa0391270	0.830977	2.166388e-55	-8.615850e-47
Msa0027860	Msa0391270	0.812060	5.126685e-51	-8.615850e-47
Msa0033190	Msa0391270	-0.821162	4.673810e-53	-8.615850e-47
Msa0048380	Msa0391270	0.805697	1.177751e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391270	MtrunA17_Chr8g0373301	95.117	471	23	0	1	471	1	471	0.0	917
Msa0391270	MtrunA17_Chr8g0339631	72.921	469	118	5	7	468	4	470	0.0	667
Msa0391270	MtrunA17_Chr8g0339451	70.259	464	128	4	12	466	1	463	0.0	638
Msa0391270	MtrunA17_Chr8g0339461	69.017	468	135	4	8	466	5	471	0.0	627
Msa0391270	MtrunA17_Chr7g0232401	60.759	474	170	7	7	470	4	471	0.0	570
Msa0391270	MtrunA17_Chr8g0339441	63.425	473	117	6	7	468	4	431	0.0	568
Msa0391270	MtrunA17_Chr1g0153451	52.677	467	211	6	7	468	4	465	1.99e-164	472
Msa0391270	MtrunA17_Chr8g0336741	51.288	466	216	6	9	468	13	473	3.68e-161	464
Msa0391270	MtrunA17_Chr7g0232331	50.213	470	219	9	7	467	4	467	2.06e-159	459
Msa0391270	MtrunA17_Chr8g0339601	67.868	333	98	3	144	468	1	332	2.95e-158	451

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391270	AT4G01070.1	44.050	479	253	9	1	471	1	472	6.91e-141	413
Msa0391270	AT1G01420.2	42.373	472	259	8	7	471	9	474	4.65e-134	396
Msa0391270	AT1G01420.1	42.373	472	259	8	7	471	6	471	4.91e-134	395
Msa0391270	AT1G01390.1	42.380	479	261	9	1	471	1	472	1.22e-126	377
Msa0391270	AT1G01390.2	42.380	479	261	9	1	471	18	489	2.25e-126	377
Msa0391270	AT2G18570.1	35.244	471	281	12	9	465	5	465	8.81e-90	281
Msa0391270	AT5G66690.1	34.698	464	284	9	1	455	1	454	3.49e-86	273
Msa0391270	AT3G50740.1	34.656	479	288	11	1	463	1	470	1.41e-83	266
Msa0391270	AT5G26310.1	34.409	465	286	10	1	456	1	455	1.92e-82	263
Msa0391270	AT4G01070.2	41.408	355	191	10	1	347	1	346	2.62e-82	258

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Find 108 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATTAGTTTATCTCGT+TGG	0.491724	3_2:+2755248	Msa0391270:CDS
AAAGTGCAGTGTATGGTTGA+GGG	0.489197	3_2:-2754723	None:intergenic
AACAACCATTGCTACAACCG+GGG	0.614619	3_2:-2754868	None:intergenic
AACAACGGCCAAGTTATCAT+TGG	0.521810	3_2:-2755671	None:intergenic
AACCACCCCGGTTGTAGCAA+TGG	0.507604	3_2:+2754863	Msa0391270:CDS
AACCATTGCTACAACCGGGG+TGG	0.666740	3_2:-2754865	None:intergenic
AACCCCAAGTTCAAGTTGCA+TGG	0.569524	3_2:-2754787	None:intergenic
AACTACTAACCCTTGTTCTT+TGG	0.272029	3_2:-2755543	None:intergenic
AAGAGATTCAAGTAATTTGA+GGG	0.427845	3_2:-2754700	None:intergenic
AAGAGATTCTCTCTTGCTGA+TGG	0.571776	3_2:+2755149	Msa0391270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTACTACTATATGACTAGT+TGG	-	chr3_2:2754558-2754577	None:intergenic	30.0%
ACTCAATTACAGAAGATTGA+TGG	-	chr3_2:2754599-2754618	None:intergenic	30.0%
GAAGAGATTCAAGTAATTTG+AGG	-	chr3_2:2754704-2754723	None:intergenic	30.0%
ATACTTGATGAACAAGTTTC+GGG	+	chr3_2:2754999-2755018	Msa0391270:CDS	30.0%
GATTAATAGCTTCTCAGAAA+TGG	+	chr3_2:2755178-2755197	Msa0391270:CDS	30.0%
TTTGAACCTGTTTGTATGAT+CGG	-	chr3_2:2755275-2755294	None:intergenic	30.0%
CCTAGAATTTCAGAATTACT+AGG	-	chr3_2:2755464-2755483	None:intergenic	30.0%
TTTGTTAATAGAGGGACTTA+AGG	+	chr3_2:2755718-2755737	Msa0391270:CDS	30.0%
GTTACTACTATATGACTAGT+TGG	-	chr3_2:2754558-2754577	None:intergenic	30.0%
ACTCAATTACAGAAGATTGA+TGG	-	chr3_2:2754599-2754618	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	2754540	2755955	2754540	ID=Msa0391270;Name=Msa0391270
chr3_2	mRNA	2754540	2755955	2754540	ID=Msa0391270-mRNA-1;Parent=Msa0391270;Name=Msa0391270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|471
chr3_2	exon	2754540	2755955	2754540	ID=Msa0391270-mRNA-1:exon:793;Parent=Msa0391270-mRNA-1
chr3_2	CDS	2754540	2755955	2754540	ID=Msa0391270-mRNA-1:cds;Parent=Msa0391270-mRNA-1

Gene Sequence

>Msa0391270

ATGGCCGAAACAAAACCAACTAGTCATATAGTAGTAACCTCAATCCCTCTATTTAGCCATCAATCTTCTGTAATTGAGTTTTGCAAGAGACTCATTCAAGTCCATAACCACTTCCATATCACTTGCATCTTCCCCAACATTGATGCACCTATCCCAGCCACCCTCAAATTACTTGAATCTCTTCCCTCAACCATACACTGCACTTTCCTCCCTCCAATATACAAACAAGACCTACCACAAGAAGTTACCATGCAACTTGAACTTGGGGTTACTAAATCTATGCCATCTTTTCGCGAATCGTTGAGTTCGCTTTGCTCAACTTCAACCACCCCGGTTGTAGCAATGGTTGTTGATCCTTTTGCAAACCAAGCATTAGAAATAGCGAAAGAGTTCAACATCTTATCTTTCATGTACTTCCCTGTTTCTGCCATGACAACTTCACTACATTTGTATTTGCCAATACTTGATGAACAAGTTTCGGGTGAGTACATGGATCACGTTGAACCTATTCAAATTCCGGGTTGTATACCTATTTGCGGCCAAGATCTCCCTCGTACTTTTTTTGAAGATCGGTCTAGTACTGCCTACGAGACAATTCTTCGGCAAACCAAGAGATTCTCTCTTGCTGATGGTGTATTGATTAATAGCTTCTCAGAAATGGAGGAAAGTACAGTGAGAGCCTTAATGGAAAAGGAGCAGAGTAACAACAAACAATTAGTTTATCTCGTTGGACCGATCATACAAACAGGTTCAAATGAGTTAAACGAATCGGTGTGTGTAAAGTGGTTGGAGAATCAAAAACCAAAGTCTGTTTTGTATGTGTCCTTTGGAAGTAGAGGCAGTTTATCTCAAGAACAGATCAATGAACTAGCTTTAGGGTTAGAGTTGAGTGGTCAAAAATTCTTGTGGGTTTTGAGAGAACCTAGTAATTCTGAAATTCTAGGTGACCATAGTGCTAAAAGTGACCCTTTAAAATACTTACCAAATGGGTTCTTAGAGAGAACCAAAGAACAAGGGTTAGTAGTTTCTTTTTGGGCACCACAGGCTCAAATCCTAAGCCACACTTCAACTGGTGGATTTCTAACACATTGTGGTGGGAATTCAACACTCGAGAGCATTGCGTCAGGAGTGCCAATGATAACTTGGCCGTTGTTTGGCGAGCAAAGATTGAATGCTATTTTGTTAATAGAGGGACTTAAGGTGGGTTTGAAGGTAAAATTTAATGAGAGTGGCATTGCAGAAAGAGAGGAAATTGCTAAGGTGATTAGAGATTTAATGTTTGGTGAAGAAAGAAGTGAGATTCAACAAAGAATTGAAGAACTTAAATATGCTTCTACTGCTGCATTAGCAGAAGATGGGTCTTCCACAAGGGCACTTTCTCAACTTGCCATTCGAATGGAAAGCAATGCAAAGTAA

Protein sequence

>Msa0391270

MAETKPTSHIVVTSIPLFSHQSSVIEFCKRLIQVHNHFHITCIFPNIDAPIPATLKLLESLPSTIHCTFLPPIYKQDLPQEVTMQLELGVTKSMPSFRESLSSLCSTSTTPVVAMVVDPFANQALEIAKEFNILSFMYFPVSAMTTSLHLYLPILDEQVSGEYMDHVEPIQIPGCIPICGQDLPRTFFEDRSSTAYETILRQTKRFSLADGVLINSFSEMEESTVRALMEKEQSNNKQLVYLVGPIIQTGSNELNESVCVKWLENQKPKSVLYVSFGSRGSLSQEQINELALGLELSGQKFLWVLREPSNSEILGDHSAKSDPLKYLPNGFLERTKEQGLVVSFWAPQAQILSHTSTGGFLTHCGGNSTLESIASGVPMITWPLFGEQRLNAILLIEGLKVGLKVKFNESGIAEREEIAKVIRDLMFGEERSEIQQRIEELKYASTAALAEDGSSTRALSQLAIRMESNAK*