AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0013270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013270 MtrunA17_Chr1g0162571 95.876 485 20 0 1 485 1 485 0.0 930
Msa0013270 MtrunA17_Chr4g0034141 65.424 483 164 2 3 485 2 481 0.0 672
Msa0013270 MtrunA17_Chr3g0141271 52.954 474 214 7 13 482 89 557 9.60e-174 500
Msa0013270 MtrunA17_Chr1g0154381 50.000 478 231 6 8 483 52 523 2.42e-169 487
Msa0013270 MtrunA17_Chr1g0162581 81.673 251 42 1 1 247 1 251 6.35e-151 430
Msa0013270 MtrunA17_Chr1g0162591 81.818 242 44 0 244 485 3 244 1.96e-146 418
Msa0013270 MtrunA17_Chr2g0322321 38.397 474 271 8 14 482 22 479 4.82e-104 319
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013270 AT5G42650.1 49.578 474 232 5 12 483 49 517 4.75e-167 482
Msa0013270 AT4G15440.1 39.642 391 223 5 94 482 4 383 1.29e-86 271

Find 84 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTGAAGATGGGCTTTC+TGG 0.143199 1_1:-20560330 Msa0013270:CDS
TTTCTTCTCAATTTAGAATT+TGG 0.147423 1_1:-20558088 Msa0013270:three_prime_UTR
CTTTCGCGACAAAAGATTCT+AGG 0.247314 1_1:-20558437 Msa0013270:CDS
CTTGCTCCACTTGCAACTTT+AGG 0.254713 1_1:-20560159 Msa0013270:CDS
TCAAGATAATTGAAAATCTT+AGG 0.276501 1_1:+20560132 None:intergenic
TGCTATGACTCTTGGGTTTG+AGG 0.356639 1_1:+20560593 None:intergenic
TTCATAGAGCTTCTTGTAAG+AGG 0.382252 1_1:+20558857 None:intergenic
GTCCTAAAATGTTTGATACT+TGG 0.383207 1_1:-20560194 Msa0013270:CDS
GGATTGGGAATTGATTCTTT+AGG 0.384415 1_1:+20558721 None:intergenic
AGAAGAATTTGTCTCTTCCT+TGG 0.393328 1_1:+20560682 None:intergenic
CCAATCCTCTTCAAATGGTT+AGG 0.410637 1_1:-20558705 Msa0013270:CDS
GGTTTGGTTCATTTGTGTCT+AGG 0.424473 1_1:+20560448 None:intergenic
CCTAACCATTTGAAGAGGAT+TGG 0.428897 1_1:+20558705 None:intergenic
TCTAAAAGTGCTATGACTCT+TGG 0.437203 1_1:+20560585 None:intergenic
CTAACCATTTGAAGAGGATT+GGG 0.438902 1_1:+20558706 None:intergenic
CTAAAAGTGCTATGACTCTT+GGG 0.446715 1_1:+20560586 None:intergenic
CCTTTCCTGCTTGTTTGACA+AGG 0.452440 1_1:-20560086 Msa0013270:intron
AATTCCCAATCCTCTTCAAA+TGG 0.458136 1_1:-20558710 Msa0013270:CDS
AAAGGGAGGCCATAGCTGCC+TGG 0.458877 1_1:+20560744 None:intergenic
CCTTTGATAAGTGCATGGTT+TGG 0.464225 1_1:+20560432 None:intergenic
GCATATTGATAAGGCACAGC+TGG 0.468805 1_1:+20558543 None:intergenic
CCAGGACATTGCTTATTCTC+CGG 0.473304 1_1:+20558306 None:intergenic
TACCGTGGTTCTTATCTCGT+TGG 0.476125 1_1:+20558650 None:intergenic
CCGGAGAATAAGCAATGTCC+TGG 0.476675 1_1:-20558306 Msa0013270:CDS
AAACAAATCCCAGGCAGCTA+TGG 0.478988 1_1:-20560753 Msa0013270:CDS
TCTTGGGTTTGAGGAAATGA+AGG 0.480085 1_1:+20560602 None:intergenic
TTTGTGGCGAAGAGGTTTGT+GGG 0.486770 1_1:-20558393 Msa0013270:CDS
CCTTGTCAAACAAGCAGGAA+AGG 0.488909 1_1:+20560086 None:intergenic
TAGTGGGAGCTCTTTGTTGG+TGG 0.491046 1_1:+20560776 None:intergenic
TTTGTGTAGATTGTTATTGG+TGG 0.498822 1_1:-20558265 Msa0013270:CDS
GAAACTATCCTTAGTGATCA+AGG 0.502793 1_1:-20560216 Msa0013270:CDS
TTGAGAAGAAACAATCCAAA+AGG 0.512762 1_1:+20558100 None:intergenic
TAGTCGTGTCGGTCGAAGAT+CGG 0.514893 1_1:+20560714 None:intergenic
TTCAGAACCAACATGCCTCC+AGG 0.517385 1_1:-20560627 Msa0013270:CDS
CATTGCTTATTCTCCGGTGA+AGG 0.518086 1_1:+20558312 None:intergenic
AATTCAAACACTAGAAGCCT+TGG 0.519083 1_1:+20558161 None:intergenic
CGAAGATCGGTCCGATGAAA+GGG 0.519863 1_1:+20560727 None:intergenic
CGGAGTAACAATTCAGTCGT+TGG 0.521687 1_1:-20558616 Msa0013270:CDS
GATGGGCTTTCTGGTAAAAG+TGG 0.524979 1_1:-20560321 Msa0013270:CDS
TCGAAGATCGGTCCGATGAA+AGG 0.525790 1_1:+20560726 None:intergenic
TTTCGCGACAAAAGATTCTA+GGG 0.530911 1_1:-20558436 Msa0013270:CDS
AGCTATGGCCTCCCTTTCAT+CGG 0.539465 1_1:-20560738 Msa0013270:CDS
TAGACAACTGATTTAACTAA+CGG 0.540239 1_1:+20558585 None:intergenic
AAGGGAGGCCATAGCTGCCT+GGG 0.542022 1_1:+20560745 None:intergenic
TTTAAGACTATACTTTCTGA+TGG 0.546680 1_1:-20560360 Msa0013270:CDS
CCAAACCATGCACTTATCAA+AGG 0.547827 1_1:-20560432 Msa0013270:CDS
GCGAAGAGGTTTGTGGGTGA+AGG 0.550877 1_1:-20558387 Msa0013270:CDS
ACAGCAGGCTTCAACGCATA+CGG 0.551389 1_1:-20558747 Msa0013270:CDS
CTTGTCAAACAAGCAGGAAA+GGG 0.552808 1_1:+20560087 None:intergenic
AAAGTATAGTCTTAAAGAGA+GGG 0.558116 1_1:+20560367 None:intergenic
GAAAGTATAGTCTTAAAGAG+AGG 0.560352 1_1:+20560366 None:intergenic
CACGACTACTTCTACAACCA+AGG 0.569461 1_1:-20560699 Msa0013270:CDS
AGCCTTGGTGAGTGAAGTAA+TGG 0.570221 1_1:+20558176 None:intergenic
AGAAACCTTTGATAAGTGCA+TGG 0.573003 1_1:+20560427 None:intergenic
AGAAACAGAAGAGCCTTCAC+CGG 0.581455 1_1:-20558325 Msa0013270:CDS
TGTGAAAATGATATTGTGGC+AGG 0.587718 1_1:+20558767 None:intergenic
TCTCACCTTGTCAAACAAGC+AGG 0.589767 1_1:+20560081 None:intergenic
CACTAAGGATAGTTTCAGAA+GGG 0.592454 1_1:+20560223 None:intergenic
GAAGGGACCTGGAGGCATGT+TGG 0.593712 1_1:+20560620 None:intergenic
TCACTAAGGATAGTTTCAGA+AGG 0.597461 1_1:+20560222 None:intergenic
AGCACAACAAGATTCTTCCC+AGG 0.597965 1_1:+20558288 None:intergenic
AGATAATTGAAAATCTTAGG+AGG 0.601465 1_1:+20560135 None:intergenic
ACGAACCTAACCATTTGAAG+AGG 0.604803 1_1:+20558700 None:intergenic
TTTGAGGAAATGAAGGGACC+TGG 0.609736 1_1:+20560609 None:intergenic
TACCATTACTTCACTCACCA+AGG 0.612014 1_1:-20558178 Msa0013270:CDS
AGCACATACACGGTAGCCAC+CGG 0.619228 1_1:+20560473 None:intergenic
CTCCCACTAAAACAAATCCC+AGG 0.620738 1_1:-20560762 Msa0013270:CDS
GGAGGTCCTAAAGTTGCAAG+TGG 0.621056 1_1:+20560153 None:intergenic
CGGAGAATAAGCAATGTCCT+GGG 0.627055 1_1:-20558305 Msa0013270:CDS
CTTGGGTTTGAGGAAATGAA+GGG 0.627221 1_1:+20560603 None:intergenic
AGAACCACGGTAAAACAAGA+AGG 0.628319 1_1:-20558639 Msa0013270:CDS
ATGCCGTCGACAAAATTCAC+CGG 0.643799 1_1:-20560492 Msa0013270:CDS
AGATCGGTCCGATGAAAGGG+AGG 0.647150 1_1:+20560730 None:intergenic
GGTTGTAGAAGTAGTCGTGT+CGG 0.648799 1_1:+20560703 None:intergenic
CTGCTGTGAAAATGATATTG+TGG 0.653163 1_1:+20558763 None:intergenic
ACGGCATGTAAGTGCCGTCG+AGG 0.653207 1_1:+20560508 None:intergenic
GAAGAGGATCGGGAAAGATG+CGG 0.653874 1_1:+20560560 None:intergenic
GAGGAAATGAAGGGACCTGG+AGG 0.681898 1_1:+20560612 None:intergenic
CCGTCGACAAAATTCACCGG+TGG 0.687714 1_1:-20560489 Msa0013270:CDS
GCAGGCTTCAACGCATACGG+TGG 0.689465 1_1:-20558744 Msa0013270:CDS
TGTCTAGGTAAGCACATACA+CGG 0.697884 1_1:+20560463 None:intergenic
CGCCAACGAGATAAGAACCA+CGG 0.704471 1_1:-20558652 Msa0013270:CDS
ACCACGGTAAAACAAGAAGG+CGG 0.715244 1_1:-20558636 Msa0013270:CDS
AATCGTGAAGAGTCACGACG+CGG 0.770505 1_1:-20558502 Msa0013270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAATTGTTCTTTTTTT+TGG - chr1_1:20559601-20559620 Msa0013270:intron 10.0%
!!! AATTAATTGTTCTTTTTTTT+GGG - chr1_1:20559602-20559621 Msa0013270:intron 10.0%
!!! TGTTTTTCTTTTTATAATTA+TGG - chr1_1:20559664-20559683 Msa0013270:intron 10.0%
!!! ATCAAAATCTAATTATTTTA+CGG - chr1_1:20559881-20559900 Msa0013270:intron 10.0%
!!! ATATTTTTTTATGGGTTAAT+TGG + chr1_1:20558022-20558041 None:intergenic 15.0%
!!! AACTCTTGATATTTTTTTAT+GGG + chr1_1:20558030-20558049 None:intergenic 15.0%
!!! AAACTCTTGATATTTTTTTA+TGG + chr1_1:20558031-20558050 None:intergenic 15.0%
!!! AAAGAGTGAATATTTTATTA+AGG - chr1_1:20559102-20559121 Msa0013270:intron 15.0%
!!! AAGAGTGAATATTTTATTAA+GGG - chr1_1:20559103-20559122 Msa0013270:intron 15.0%
!!! TTTCTTTTCTTTTTTCTTTT+TGG + chr1_1:20559514-20559533 None:intergenic 15.0%
!! AAAGAAAAGAAAATATGATA+TGG - chr1_1:20559522-20559541 Msa0013270:intron 15.0%
!! AAAATATGATATGGTTATTA+CGG - chr1_1:20559531-20559550 Msa0013270:intron 15.0%
!! ATACATGTAATTAACAAAAA+TGG + chr1_1:20560840-20560859 None:intergenic 15.0%
!!! AGATTGTTGAATTGTATTTT+TGG + chr1_1:20558217-20558236 None:intergenic 20.0%
!!! GTTTTAATGAAATTGAAGAT+GGG - chr1_1:20558525-20558544 Msa0013270:CDS 20.0%
!! TCAAGATAATTGAAAATCTT+AGG + chr1_1:20558734-20558753 None:intergenic 20.0%
!! CAAATGCTACAATTAAAAAT+TGG + chr1_1:20559021-20559040 None:intergenic 20.0%
!!! AGAGTGAATATTTTATTAAG+GGG - chr1_1:20559104-20559123 Msa0013270:intron 20.0%
!! AAAAAGTGAAAACTATATTG+TGG - chr1_1:20559466-20559485 Msa0013270:intron 20.0%
!!! CATGATTTTGATCTTAAATA+AGG + chr1_1:20559751-20559770 None:intergenic 20.0%
!!! TTTCTTCTCAATTTAGAATT+TGG - chr1_1:20560775-20560794 Msa0013270:CDS 20.0%
!!! TTTTTATGGGTTAATTGGTT+TGG + chr1_1:20558017-20558036 None:intergenic 25.0%
!! AAAGTATAGTCTTAAAGAGA+GGG + chr1_1:20558499-20558518 None:intergenic 25.0%
!! TTTAAGACTATACTTTCTGA+TGG - chr1_1:20558503-20558522 Msa0013270:CDS 25.0%
!!! GGTTTTAATGAAATTGAAGA+TGG - chr1_1:20558524-20558543 Msa0013270:CDS 25.0%
!!! TTTTAACTCTATTATGAGTG+TGG - chr1_1:20558574-20558593 Msa0013270:CDS 25.0%
!! AACCAAGTATCAAACATTTT+AGG + chr1_1:20558674-20558693 None:intergenic 25.0%
! AGATAATTGAAAATCTTAGG+AGG + chr1_1:20558731-20558750 None:intergenic 25.0%
! CAAAAAGATCCTATGTTTAA+GGG + chr1_1:20558819-20558838 None:intergenic 25.0%
!!! ACTCATTAACTTGATTTTGA+AGG + chr1_1:20559146-20559165 None:intergenic 25.0%
! AAAATCAAGTTAATGAGTCA+AGG - chr1_1:20559148-20559167 Msa0013270:intron 25.0%
! GAAAAACTCAGCTTAATAAA+GGG + chr1_1:20559310-20559329 None:intergenic 25.0%
! AGAAAAACTCAGCTTAATAA+AGG + chr1_1:20559311-20559330 None:intergenic 25.0%
! AATTTCTGAATGAAAGAACA+AGG + chr1_1:20559586-20559605 None:intergenic 25.0%
!! CATGAATCTAAATTTTCCTT+TGG + chr1_1:20559858-20559877 None:intergenic 25.0%
! TCCCTAACATTAAATTGTTA+CGG - chr1_1:20559977-20559996 Msa0013270:intron 25.0%
!! TAGACAACTGATTTAACTAA+CGG + chr1_1:20560281-20560300 None:intergenic 25.0%
! AAAAAGGGTGAAATGATATT+TGG - chr1_1:20560395-20560414 Msa0013270:CDS 25.0%
!!! TTCTTGTTTTGAAGATGTCA+TGG + chr1_1:20558060-20558079 None:intergenic 30.0%
! GAAAGTATAGTCTTAAAGAG+AGG + chr1_1:20558500-20558519 None:intergenic 30.0%
GTCCTAAAATGTTTGATACT+TGG - chr1_1:20558669-20558688 Msa0013270:CDS 30.0%
CCAAAAAGATCCTATGTTTA+AGG + chr1_1:20558820-20558839 None:intergenic 30.0%
! CCTTAAACATAGGATCTTTT+TGG - chr1_1:20558817-20558836 Msa0013270:CDS 30.0%
TTGCTTAACATATGCTCTAA+TGG - chr1_1:20559268-20559287 Msa0013270:intron 30.0%
TGCTTAACATATGCTCTAAT+GGG - chr1_1:20559269-20559288 Msa0013270:intron 30.0%
ATTGTGGTGAAAATGTGATA+TGG - chr1_1:20559482-20559501 Msa0013270:intron 30.0%
CGAACATAATAATGATGTCT+AGG - chr1_1:20559817-20559836 Msa0013270:intron 30.0%
GAAGAATCTAATGATTCCAA+AGG - chr1_1:20559839-20559858 Msa0013270:intron 30.0%
GCCGTAACAATTTAATGTTA+GGG + chr1_1:20559981-20560000 None:intergenic 30.0%
!! CTTGCTTTTGCATATTGATA+AGG + chr1_1:20560332-20560351 None:intergenic 30.0%
!!! TTCACCCTTTTTTATCTCAA+AGG + chr1_1:20560387-20560406 None:intergenic 30.0%
! AGTTGTTGAAGTATGTTTTG+TGG - chr1_1:20560504-20560523 Msa0013270:CDS 30.0%
! AAGTATGTTTTGTGGTCTAA+TGG - chr1_1:20560512-20560531 Msa0013270:CDS 30.0%
! AGTATGTTTTGTGGTCTAAT+GGG - chr1_1:20560513-20560532 Msa0013270:CDS 30.0%
! GCTTTTGTGTAGATTGTTAT+TGG - chr1_1:20560595-20560614 Msa0013270:CDS 30.0%
! TTTGTGTAGATTGTTATTGG+TGG - chr1_1:20560598-20560617 Msa0013270:CDS 30.0%
GAGACTAAAAATGTTGCATT+TGG - chr1_1:20560653-20560672 Msa0013270:CDS 30.0%
!!! TCTTGTTTTGTTCTTCCTTT+TGG - chr1_1:20560748-20560767 Msa0013270:CDS 30.0%
TTGAGAAGAAACAATCCAAA+AGG + chr1_1:20560766-20560785 None:intergenic 30.0%
AGAAGAATTTGTCTCTTCCT+TGG + chr1_1:20558184-20558203 None:intergenic 35.0%
!! CTAAAAGTGCTATGACTCTT+GGG + chr1_1:20558280-20558299 None:intergenic 35.0%
!! TCTAAAAGTGCTATGACTCT+TGG + chr1_1:20558281-20558300 None:intergenic 35.0%
!! TTTTTGTTGTCGAAGAGGAT+CGG + chr1_1:20558317-20558336 None:intergenic 35.0%
AGAAACCTTTGATAAGTGCA+TGG + chr1_1:20558439-20558458 None:intergenic 35.0%
CACTAAGGATAGTTTCAGAA+GGG + chr1_1:20558643-20558662 None:intergenic 35.0%
TCACTAAGGATAGTTTCAGA+AGG + chr1_1:20558644-20558663 None:intergenic 35.0%
GAAACTATCCTTAGTGATCA+AGG - chr1_1:20558647-20558666 Msa0013270:CDS 35.0%
!!! TTTTAGGACCTTGATCACTA+AGG + chr1_1:20558658-20558677 None:intergenic 35.0%
GGCCGTAACAATTTAATGTT+AGG + chr1_1:20559982-20560001 None:intergenic 35.0%
AACATTAAATTGTTACGGCC+AGG - chr1_1:20559982-20560001 Msa0013270:intron 35.0%
TTCATAGAGCTTCTTGTAAG+AGG + chr1_1:20560009-20560028 None:intergenic 35.0%
TTAAACGAAGCAGAAAAAGC+CGG - chr1_1:20560056-20560075 Msa0013270:intron 35.0%
TGTGAAAATGATATTGTGGC+AGG + chr1_1:20560099-20560118 None:intergenic 35.0%
CTGCTGTGAAAATGATATTG+TGG + chr1_1:20560103-20560122 None:intergenic 35.0%
! CACAATATCATTTTCACAGC+AGG - chr1_1:20560101-20560120 Msa0013270:CDS 35.0%
! GGATTGGGAATTGATTCTTT+AGG + chr1_1:20560145-20560164 None:intergenic 35.0%
AATTCCCAATCCTCTTCAAA+TGG - chr1_1:20560153-20560172 Msa0013270:CDS 35.0%
CTAACCATTTGAAGAGGATT+GGG + chr1_1:20560160-20560179 None:intergenic 35.0%
TTTCGCGACAAAAGATTCTA+GGG - chr1_1:20560427-20560446 Msa0013270:CDS 35.0%
AATTCAAACACTAGAAGCCT+TGG + chr1_1:20560705-20560724 None:intergenic 35.0%
! TTTTAGTGGGAGCTCTTTGT+TGG + chr1_1:20558093-20558112 None:intergenic 40.0%
!!! TGCCTGGGATTTGTTTTAGT+GGG + chr1_1:20558106-20558125 None:intergenic 40.0%
CTTGGGTTTGAGGAAATGAA+GGG + chr1_1:20558263-20558282 None:intergenic 40.0%
TCTTGGGTTTGAGGAAATGA+AGG + chr1_1:20558264-20558283 None:intergenic 40.0%
!! TTTTGTTGTCGAAGAGGATC+GGG + chr1_1:20558316-20558335 None:intergenic 40.0%
!!! CGACTTTTTTGTTGTCGAAG+AGG + chr1_1:20558322-20558341 None:intergenic 40.0%
TGTCTAGGTAAGCACATACA+CGG + chr1_1:20558403-20558422 None:intergenic 40.0%
! GGTTTGGTTCATTTGTGTCT+AGG + chr1_1:20558418-20558437 None:intergenic 40.0%
CCTTTGATAAGTGCATGGTT+TGG + chr1_1:20558434-20558453 None:intergenic 40.0%
CCAAACCATGCACTTATCAA+AGG - chr1_1:20558431-20558450 Msa0013270:CDS 40.0%
! GAAATTGAAGATGGGCTTTC+TGG - chr1_1:20558533-20558552 Msa0013270:CDS 40.0%
CTTGTCAAACAAGCAGGAAA+GGG + chr1_1:20558779-20558798 None:intergenic 40.0%
CATACCACACCCTTAAACAT+AGG - chr1_1:20558807-20558826 Msa0013270:CDS 40.0%
AGATCCTATGTTTAAGGGTG+TGG + chr1_1:20558814-20558833 None:intergenic 40.0%
! GGCTTCGCTTCTTTTTAAAC+CGG + chr1_1:20560078-20560097 None:intergenic 40.0%
CCTAACCATTTGAAGAGGAT+TGG + chr1_1:20560161-20560180 None:intergenic 40.0%
CCAATCCTCTTCAAATGGTT+AGG - chr1_1:20560158-20560177 Msa0013270:CDS 40.0%
ACGAACCTAACCATTTGAAG+AGG + chr1_1:20560166-20560185 None:intergenic 40.0%
AGAACCACGGTAAAACAAGA+AGG - chr1_1:20560224-20560243 Msa0013270:CDS 40.0%
!! GCGGCCTTTGAGATAAAAAA+GGG - chr1_1:20560380-20560399 Msa0013270:CDS 40.0%
! AATCTTTTGTCGCGAAAGGT+TGG + chr1_1:20560424-20560443 None:intergenic 40.0%
! CTAGAATCTTTTGTCGCGAA+AGG + chr1_1:20560428-20560447 None:intergenic 40.0%
CTTTCGCGACAAAAGATTCT+AGG - chr1_1:20560426-20560445 Msa0013270:CDS 40.0%
TACCATTACTTCACTCACCA+AGG - chr1_1:20560685-20560704 Msa0013270:CDS 40.0%
CTCCCACTAAAACAAATCCC+AGG - chr1_1:20558101-20558120 Msa0013270:three_prime_UTR 45.0%
!!! CTGCCTGGGATTTGTTTTAG+TGG + chr1_1:20558107-20558126 None:intergenic 45.0%
AAACAAATCCCAGGCAGCTA+TGG - chr1_1:20558110-20558129 Msa0013270:three_prime_UTR 45.0%
GGTTGTAGAAGTAGTCGTGT+CGG + chr1_1:20558163-20558182 None:intergenic 45.0%
CACGACTACTTCTACAACCA+AGG - chr1_1:20558164-20558183 Msa0013270:CDS 45.0%
TTTGAGGAAATGAAGGGACC+TGG + chr1_1:20558257-20558276 None:intergenic 45.0%
TGCTATGACTCTTGGGTTTG+AGG + chr1_1:20558273-20558292 None:intergenic 45.0%
GAAAAACTCAACGTCCTCGA+CGG - chr1_1:20558341-20558360 Msa0013270:CDS 45.0%
ATGCCGTCGACAAAATTCAC+CGG - chr1_1:20558371-20558390 Msa0013270:CDS 45.0%
! GATGGGCTTTCTGGTAAAAG+TGG - chr1_1:20558542-20558561 Msa0013270:CDS 45.0%
CTTGCTCCACTTGCAACTTT+AGG - chr1_1:20558704-20558723 Msa0013270:CDS 45.0%
CCTTGTCAAACAAGCAGGAA+AGG + chr1_1:20558780-20558799 None:intergenic 45.0%
CCTTTCCTGCTTGTTTGACA+AGG - chr1_1:20558777-20558796 Msa0013270:CDS 45.0%
TCTCACCTTGTCAAACAAGC+AGG + chr1_1:20558785-20558804 None:intergenic 45.0%
! CTAATGGGCACAAGTTAGCA+TGG - chr1_1:20559284-20559303 Msa0013270:intron 45.0%
TACCGTGGTTCTTATCTCGT+TGG + chr1_1:20560216-20560235 None:intergenic 45.0%
ACCACGGTAAAACAAGAAGG+CGG - chr1_1:20560227-20560246 Msa0013270:CDS 45.0%
CGGAGTAACAATTCAGTCGT+TGG - chr1_1:20560247-20560266 Msa0013270:CDS 45.0%
GCATATTGATAAGGCACAGC+TGG + chr1_1:20560323-20560342 None:intergenic 45.0%
!! CGCGGCCTTTGAGATAAAAA+AGG - chr1_1:20560379-20560398 Msa0013270:CDS 45.0%
! TTTTGTGGCGAAGAGGTTTG+TGG - chr1_1:20560469-20560488 Msa0013270:CDS 45.0%
TTTGTGGCGAAGAGGTTTGT+GGG - chr1_1:20560470-20560489 Msa0013270:CDS 45.0%
AGAAACAGAAGAGCCTTCAC+CGG - chr1_1:20560538-20560557 Msa0013270:CDS 45.0%
CATTGCTTATTCTCCGGTGA+AGG + chr1_1:20560554-20560573 None:intergenic 45.0%
CCAGGACATTGCTTATTCTC+CGG + chr1_1:20560560-20560579 None:intergenic 45.0%
CGGAGAATAAGCAATGTCCT+GGG - chr1_1:20560558-20560577 Msa0013270:CDS 45.0%
AGCACAACAAGATTCTTCCC+AGG + chr1_1:20560578-20560597 None:intergenic 45.0%
AGCCTTGGTGAGTGAAGTAA+TGG + chr1_1:20560690-20560709 None:intergenic 45.0%
!!! TAATTTTATCAATATATAAT+TGG + chr1_1:20558960-20558979 None:intergenic 5.0%
!!! ATTTTTTTTTTTTTTACTTT+TGG - chr1_1:20559244-20559263 Msa0013270:intron 5.0%
!!! TTTTTTTTTTTTTTACTTTT+GGG - chr1_1:20559245-20559264 Msa0013270:intron 5.0%
TAGTGGGAGCTCTTTGTTGG+TGG + chr1_1:20558090-20558109 None:intergenic 50.0%
AGCTATGGCCTCCCTTTCAT+CGG - chr1_1:20558125-20558144 Msa0013270:three_prime_UTR 50.0%
CGAAGATCGGTCCGATGAAA+GGG + chr1_1:20558139-20558158 None:intergenic 50.0%
TCGAAGATCGGTCCGATGAA+AGG + chr1_1:20558140-20558159 None:intergenic 50.0%
! TAGTCGTGTCGGTCGAAGAT+CGG + chr1_1:20558152-20558171 None:intergenic 50.0%
TTCAGAACCAACATGCCTCC+AGG - chr1_1:20558236-20558255 Msa0013270:CDS 50.0%
GAAGAGGATCGGGAAAGATG+CGG + chr1_1:20558306-20558325 None:intergenic 50.0%
! CCACCGGTGAATTTTGTCGA+CGG + chr1_1:20558377-20558396 None:intergenic 50.0%
GGAGGTCCTAAAGTTGCAAG+TGG + chr1_1:20558713-20558732 None:intergenic 50.0%
GAGCTTCTTGTAAGAGGACC+TGG + chr1_1:20560003-20560022 None:intergenic 50.0%
ACAGCAGGCTTCAACGCATA+CGG - chr1_1:20560116-20560135 Msa0013270:CDS 50.0%
CGCCAACGAGATAAGAACCA+CGG - chr1_1:20560211-20560230 Msa0013270:CDS 50.0%
!!! TCCGCCTTCTTGTTTTACCG+TGG + chr1_1:20560231-20560250 None:intergenic 50.0%
AATCGTGAAGAGTCACGACG+CGG - chr1_1:20560361-20560380 Msa0013270:CDS 50.0%
! TAGGGTTTTCGACGATCCTG+AGG - chr1_1:20560445-20560464 Msa0013270:CDS 50.0%
! CGACGATCCTGAGGTTTTTG+TGG - chr1_1:20560454-20560473 Msa0013270:CDS 50.0%
CTCTTCGCCACAAAAACCTC+AGG + chr1_1:20560464-20560483 None:intergenic 50.0%
! CTGAGGTTTTTGTGGCGAAG+AGG - chr1_1:20560462-20560481 Msa0013270:CDS 50.0%
CCGGAGAATAAGCAATGTCC+TGG - chr1_1:20560557-20560576 Msa0013270:CDS 50.0%
AGATCGGTCCGATGAAAGGG+AGG + chr1_1:20558136-20558155 None:intergenic 55.0%
GAGGAAATGAAGGGACCTGG+AGG + chr1_1:20558254-20558273 None:intergenic 55.0%
CCGTCGACAAAATTCACCGG+TGG - chr1_1:20558374-20558393 Msa0013270:CDS 55.0%
AGCACATACACGGTAGCCAC+CGG + chr1_1:20558393-20558412 None:intergenic 55.0%
GCGAAGAGGTTTGTGGGTGA+AGG - chr1_1:20560476-20560495 Msa0013270:CDS 55.0%
AAGGGAGGCCATAGCTGCCT+GGG + chr1_1:20558121-20558140 None:intergenic 60.0%
AAAGGGAGGCCATAGCTGCC+TGG + chr1_1:20558122-20558141 None:intergenic 60.0%
! GAAGGGACCTGGAGGCATGT+TGG + chr1_1:20558246-20558265 None:intergenic 60.0%
! ACGGCATGTAAGTGCCGTCG+AGG + chr1_1:20558358-20558377 None:intergenic 60.0%
GCAGGCTTCAACGCATACGG+TGG - chr1_1:20560119-20560138 Msa0013270:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 20558005 20560880 20558005 ID=Msa0013270;Name=Msa0013270
chr1_1 mRNA 20558005 20560880 20558005 ID=Msa0013270-mRNA-1;Parent=Msa0013270;Name=Msa0013270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=54|1|1|1|1|1|2|159|485
chr1_1 exon 20558005 20558881 20558005 ID=Msa0013270-mRNA-1:exon:7314;Parent=Msa0013270-mRNA-1
chr1_1 exon 20560087 20560880 20560087 ID=Msa0013270-mRNA-1:exon:7313;Parent=Msa0013270-mRNA-1
chr1_1 five_prime_UTR 20560827 20560880 20560827 ID=Msa0013270-mRNA-1:five_prime_utr;Parent=Msa0013270-mRNA-1
chr1_1 CDS 20560087 20560826 20560087 ID=Msa0013270-mRNA-1:cds;Parent=Msa0013270-mRNA-1
chr1_1 CDS 20558164 20558881 20558164 ID=Msa0013270-mRNA-1:cds;Parent=Msa0013270-mRNA-1
chr1_1 three_prime_UTR 20558005 20558163 20558005 ID=Msa0013270-mRNA-1:three_prime_utr;Parent=Msa0013270-mRNA-1
Gene Sequence

>Msa0013270

ATGACATCTTCAAAACAAGAACAATCTTCCACCAACAAAGAGCTCCCACTAAAACAAATCCCAGGCAGCTATGGCCTCCCTTTCATCGGACCGATCTTCGACCGACACGACTACTTCTACAACCAAGGAAGAGACAAATTCTTCTCAACAAGAATCCAAAAATACAATTCAACAATCTTCAGAACCAACATGCCTCCAGGTCCCTTCATTTCCTCAAACCCAAGAGTCATAGCACTTTTAGACGCCGCATCTTTCCCGATCCTCTTCGACAACAAAAAAGTCGAAAAACTCAACGTCCTCGACGGCACTTACATGCCGTCGACAAAATTCACCGGTGGCTACCGTGTATGTGCTTACCTAGACACAAATGAACCAAACCATGCACTTATCAAAGGTTTCTATCTTAATACTCTTTTGTTAAGAAAAGACTCTTTTATCCCTCTCTTTAAGACTATACTTTCTGATGGTTTTAATGAAATTGAAGATGGGCTTTCTGGTAAAAGTGGTAAAGCTGATTTTAACTCTATTATGAGTGTGGCTTCGTTTAACTTCATGTTTAAGCTTTTTTGTGATAATAAGAACCCTTCTGAAACTATCCTTAGTGATCAAGGTCCTAAAATGTTTGATACTTGGTTACTCTTTCAACTTGCTCCACTTGCAACTTTAGGACCTCCTAAGATTTTCAATTATCTTGAAGATATCTTGCTACGTACTGTGCCCTTTCCTGCTTGTTTGACAAGGTCCTCTTACAAGAAGCTCTATGAAGCATTTTCTACTTCAGCTACAACAATGTTAAACGAAGCAGAAAAAGCCGGTTTAAAAAGAAGCGAAGCCTGCCACAATATCATTTTCACAGCAGGCTTCAACGCATACGGTGGCCTAAAGAATCAATTCCCAATCCTCTTCAAATGGTTAGGTTCGTGCAGCGAAGAGCTACACAAAGAACTCGCCAACGAGATAAGAACCACGGTAAAACAAGAAGGCGGAGTAACAATTCAGTCGTTGGAAAAAATGCCGTTAGTTAAATCAGTTGTCTATGAAGCAATGCGAATTGAACCAGCTGTGCCTTATCAATATGCAAAAGCAAGAGAAGATTTAATCGTGAAGAGTCACGACGCGGCCTTTGAGATAAAAAAGGGTGAAATGATATTTGGATACCAACCTTTCGCGACAAAAGATTCTAGGGTTTTCGACGATCCTGAGGTTTTTGTGGCGAAGAGGTTTGTGGGTGAAGGTGAGAAGTTGTTGAAGTATGTTTTGTGGTCTAATGGGAAAGAAACAGAAGAGCCTTCACCGGAGAATAAGCAATGTCCTGGGAAGAATCTTGTTGTGCTTTTGTGTAGATTGTTATTGGTGGAGTTTTTCTTGCGTTATGATACTTTTGAGATTGAGACTAAAAATGTTGCATTTGGTGCTTCAGTTACCATTACTTCACTCACCAAGGCTTCTAGTGTTTGA

Protein sequence

>Msa0013270

MTSSKQEQSSTNKELPLKQIPGSYGLPFIGPIFDRHDYFYNQGRDKFFSTRIQKYNSTIFRTNMPPGPFISSNPRVIALLDAASFPILFDNKKVEKLNVLDGTYMPSTKFTGGYRVCAYLDTNEPNHALIKGFYLNTLLLRKDSFIPLFKTILSDGFNEIEDGLSGKSGKADFNSIMSVASFNFMFKLFCDNKNPSETILSDQGPKMFDTWLLFQLAPLATLGPPKIFNYLEDILLRTVPFPACLTRSSYKKLYEAFSTSATTMLNEAEKAGLKRSEACHNIIFTAGFNAYGGLKNQFPILFKWLGSCSEELHKELANEIRTTVKQEGGVTIQSLEKMPLVKSVVYEAMRIEPAVPYQYAKAREDLIVKSHDAAFEIKKGEMIFGYQPFATKDSRVFDDPEVFVAKRFVGEGEKLLKYVLWSNGKETEEPSPENKQCPGKNLVVLLCRLLLVEFFLRYDTFEIETKNVAFGASVTITSLTKASSV*