Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536310 | XP_003604976.1 | 97.241 | 435 | 12 | 0 | 1 | 435 | 1 | 435 | 0.0 | 865 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536310 | sp|C8YNG6|KAT1_PETHY | 81.136 | 440 | 77 | 1 | 1 | 434 | 1 | 440 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536310 | G7JUJ9 | 97.241 | 435 | 12 | 0 | 1 | 435 | 1 | 435 | 0.0 | 865 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035390 | Msa0536310 | 0.810654 | 1.035147e-50 | -8.615850e-47 |
| Msa0443020 | Msa0536310 | 0.819175 | 1.332981e-52 | -8.615850e-47 |
| Msa0302870 | Msa0536310 | 0.801445 | 8.973458e-49 | -8.615850e-47 |
| Msa0506860 | Msa0536310 | 0.835365 | 1.750368e-56 | -8.615850e-47 |
| Msa0536310 | Msa0615030 | 0.808460 | 3.063987e-50 | -8.615850e-47 |
| Msa0536310 | Msa0708310 | 0.804531 | 2.066238e-49 | -8.615850e-47 |
| Msa0536310 | Msa0722630 | 0.818692 | 1.716821e-52 | -8.615850e-47 |
| Msa0536310 | Msa0828240 | 0.800459 | 1.427319e-48 | -8.615850e-47 |
| Msa0536310 | Msa1111290 | 0.807487 | 4.934045e-50 | -8.615850e-47 |
| Msa0536310 | Msa1111380 | 0.842178 | 3.029425e-58 | -8.615850e-47 |
| Msa0536310 | Msa1353890 | 0.814930 | 1.198737e-51 | -8.615850e-47 |
| Msa0536310 | Msa1383680 | 0.972582 | 5.309113e-135 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536310 | MtrunA17_Chr4g0010181 | 97.241 | 435 | 12 | 0 | 1 | 435 | 1 | 435 | 0.0 | 865 |
| Msa0536310 | MtrunA17_Chr1g0169681 | 76.417 | 441 | 97 | 2 | 1 | 434 | 1 | 441 | 0.0 | 665 |
| Msa0536310 | MtrunA17_Chr3g0078111 | 37.179 | 390 | 196 | 12 | 45 | 407 | 16 | 383 | 9.66e-60 | 200 |
| Msa0536310 | MtrunA17_Chr5g0448191 | 37.179 | 390 | 196 | 12 | 45 | 407 | 16 | 383 | 9.66e-60 | 200 |
| Msa0536310 | MtrunA17_Chr4g0076421 | 34.901 | 404 | 217 | 14 | 45 | 431 | 7 | 381 | 4.71e-52 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536310 | AT2G33150.1 | 77.045 | 440 | 95 | 1 | 1 | 434 | 1 | 440 | 0.0 | 685 |
| Msa0536310 | AT1G04710.1 | 76.443 | 433 | 100 | 1 | 1 | 433 | 1 | 431 | 0.0 | 664 |
| Msa0536310 | AT5G48880.3 | 72.562 | 441 | 114 | 3 | 1 | 434 | 1 | 441 | 0.0 | 664 |
| Msa0536310 | AT5G48880.2 | 72.562 | 441 | 114 | 3 | 1 | 434 | 1 | 441 | 0.0 | 664 |
| Msa0536310 | AT5G48880.4 | 72.562 | 441 | 114 | 3 | 1 | 434 | 1 | 441 | 0.0 | 664 |
| Msa0536310 | AT5G48880.1 | 77.099 | 393 | 88 | 1 | 44 | 434 | 6 | 398 | 0.0 | 639 |
| Msa0536310 | AT5G48230.1 | 39.164 | 383 | 202 | 11 | 43 | 407 | 5 | 374 | 3.81e-66 | 217 |
| Msa0536310 | AT5G48230.2 | 39.108 | 381 | 201 | 11 | 45 | 407 | 12 | 379 | 4.76e-65 | 214 |
| Msa0536310 | AT5G47720.3 | 36.070 | 402 | 230 | 11 | 45 | 431 | 14 | 403 | 3.29e-64 | 212 |
| Msa0536310 | AT5G47720.1 | 36.070 | 402 | 230 | 11 | 45 | 431 | 14 | 403 | 3.29e-64 | 212 |
| Msa0536310 | AT5G47720.4 | 36.070 | 402 | 230 | 11 | 45 | 431 | 14 | 403 | 3.87e-64 | 212 |
| Msa0536310 | AT5G47720.2 | 36.070 | 402 | 230 | 11 | 45 | 431 | 14 | 403 | 3.87e-64 | 212 |
| Msa0536310 | AT5G47720.5 | 36.070 | 402 | 230 | 11 | 45 | 431 | 21 | 410 | 4.67e-64 | 212 |
Find 109 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGATGAAGCAACTGAATT+TGG | 0.179478 | 4_1:+13282368 | None:intergenic |
| TGTTTATTCCTGCAAGAAAT+TGG | 0.182136 | 4_1:-13278189 | Msa0536310:CDS |
| AGAATTTGTGGAAGTTTAAA+TGG | 0.222007 | 4_1:-13277420 | Msa0536310:three_prime_UTR |
| ATCAATAAATTATGTTGTTC+TGG | 0.261714 | 4_1:-13277139 | Msa0536310:three_prime_UTR |
| CCATTGACATTGACCTTTGT+TGG | 0.268053 | 4_1:+13278158 | None:intergenic |
| CAAAAGGGGCTTCCTATTCT+TGG | 0.273850 | 4_1:-13279016 | Msa0536310:CDS |
| TTCCTATTCTTGGAATCTTC+AGG | 0.284215 | 4_1:-13279006 | Msa0536310:intron |
| AATGGTGGTGCCATGGCTTT+TGG | 0.285762 | 4_1:-13278140 | Msa0536310:CDS |
| AAGACAAATACTAGAAAATA+TGG | 0.292769 | 4_1:-13282435 | Msa0536310:exon |
| ATGACACAAGATAATATTTC+AGG | 0.310830 | 4_1:-13280253 | Msa0536310:CDS |
| TATCCGGCCAAACGCAAATT+TGG | 0.316298 | 4_1:-13279292 | Msa0536310:CDS |
| GTTTATTCCTGCAAGAAATT+GGG | 0.319184 | 4_1:-13278188 | Msa0536310:CDS |
| TCTTATTTGATGAAGGAATT+GGG | 0.337864 | 4_1:-13280291 | Msa0536310:intron |
| CGCGGAAAGGATTGTCGCTT+TGG | 0.355729 | 4_1:-13277631 | Msa0536310:CDS |
| ATCAAGCCCCAATTTCTTGC+AGG | 0.356837 | 4_1:+13278181 | None:intergenic |
| TCTCCATCTGTAGCTTTCCT+AGG | 0.359170 | 4_1:-13277196 | Msa0536310:three_prime_UTR |
| TCAATTGCTCTTTCTGATCC+TGG | 0.360216 | 4_1:+13280784 | None:intergenic |
| GCCGCAGCTGCAACAGCATC+TGG | 0.368332 | 4_1:-13279482 | Msa0536310:CDS |
| GCTGAAGCCTGCATTCAAAA+AGG | 0.374024 | 4_1:-13279256 | Msa0536310:CDS |
| GAACCCACCTTTGTAGAAAC+TGG | 0.377832 | 4_1:+13279437 | None:intergenic |
| TGAAGGAATTGGGGCTGGAT+TGG | 0.386923 | 4_1:-13280281 | Msa0536310:intron |
| AAGTTTGTGGATCCTAAAAC+TGG | 0.399124 | 4_1:-13279351 | Msa0536310:CDS |
| AGCTGCTGCAGTATTTGAAC+GGG | 0.401233 | 4_1:-13277453 | Msa0536310:CDS |
| CCGAGACTGTCTTCTTCCTA+TGG | 0.405077 | 4_1:-13279673 | Msa0536310:CDS |
| AGATCTACCAAATTTGCGTT+TGG | 0.408857 | 4_1:+13279285 | None:intergenic |
| GAGAATGTTGCGCAACGTTA+CGG | 0.420397 | 4_1:-13279639 | Msa0536310:CDS |
| TGGTGTAGATCCTGCTGTCA+TGG | 0.432233 | 4_1:-13278403 | Msa0536310:CDS |
| GAGAAGTGTGGCTGTACAAA+AGG | 0.433377 | 4_1:-13279032 | Msa0536310:CDS |
| ACTGAGGCAAGTAGATCATC+TGG | 0.434573 | 4_1:+13281546 | None:intergenic |
| GTTAATAGACAATGTTCATC+TGG | 0.437926 | 4_1:-13280444 | Msa0536310:CDS |
| TCACAAGTATGCTTGATCTC+TGG | 0.439176 | 4_1:-13277374 | Msa0536310:three_prime_UTR |
| CTCCATCTGTAGCTTTCCTA+GGG | 0.439915 | 4_1:-13277195 | Msa0536310:three_prime_UTR |
| TACATTTCAGGTTCTGGTAT+GGG | 0.444350 | 4_1:-13277476 | Msa0536310:intron |
| CTGCTGCACCATCACTAACT+TGG | 0.445534 | 4_1:+13279071 | None:intergenic |
| GCTTTCCTAGGGTTCCTTTG+AGG | 0.453360 | 4_1:-13277184 | Msa0536310:three_prime_UTR |
| ATGTTGTGTTTAATGAGATA+AGG | 0.453470 | 4_1:+13277077 | None:intergenic |
| AAAGCTGGGTTCTATGACAT+TGG | 0.454280 | 4_1:-13280387 | Msa0536310:intron |
| GGGAGACTTCTGAGAATTTG+TGG | 0.455332 | 4_1:-13277432 | Msa0536310:exon |
| CCAGCAGATTTCACTGCAGC+TGG | 0.456335 | 4_1:+13278357 | None:intergenic |
| TTCTTGATTACCTGCAGTTG+TGG | 0.457288 | 4_1:+13279227 | None:intergenic |
| ACTTTACCTGTGGCGCCTAA+AGG | 0.463429 | 4_1:+13278113 | None:intergenic |
| CTACCAAATTTGCGTTTGGC+CGG | 0.468876 | 4_1:+13279289 | None:intergenic |
| ATACATTTCAGGTTCTGGTA+TGG | 0.474139 | 4_1:-13277477 | Msa0536310:intron |
| GAAGTAGGCGACATAGTTGT+AGG | 0.476917 | 4_1:-13280820 | Msa0536310:CDS |
| TTGAAATAAGTATAAGAGAA+AGG | 0.483589 | 4_1:-13277308 | Msa0536310:three_prime_UTR |
| ACCAGATGCTGTTGCAGCTG+CGG | 0.484759 | 4_1:+13279481 | None:intergenic |
| TTTGATGAAGGAATTGGGGC+TGG | 0.488144 | 4_1:-13280286 | Msa0536310:intron |
| ATGATGAATGATATAGAAAG+TGG | 0.488529 | 4_1:+13282493 | None:intergenic |
| ATTATTGTTTCTGTTGATGA+TGG | 0.492168 | 4_1:-13279315 | Msa0536310:CDS |
| GATCCTGCTGTCATGGGTGT+TGG | 0.497368 | 4_1:-13278396 | Msa0536310:CDS |
| GGACATCCTTTAGGCGCCAC+AGG | 0.500067 | 4_1:-13278119 | Msa0536310:intron |
| TTTCTGTTGATGATGGTATC+CGG | 0.507922 | 4_1:-13279308 | Msa0536310:CDS |
| GTTGCTGCTTACATAAAAGC+TGG | 0.510537 | 4_1:-13280402 | Msa0536310:CDS |
| CCAACAAAGGTCAATGTCAA+TGG | 0.513905 | 4_1:-13278158 | Msa0536310:CDS |
| CTTATTTGATGAAGGAATTG+GGG | 0.515706 | 4_1:-13280290 | Msa0536310:intron |
| GGTGTAATCTCGATGTGTAT+AGG | 0.516266 | 4_1:-13277610 | Msa0536310:intron |
| CTATTTGCAAAGCAAAGCGT+GGG | 0.519769 | 4_1:-13281587 | Msa0536310:CDS |
| TTTATTCCTGCAAGAAATTG+GGG | 0.520297 | 4_1:-13278187 | Msa0536310:CDS |
| CATAGGAAGAAGACAGTCTC+GGG | 0.526881 | 4_1:+13279674 | None:intergenic |
| GGTGTAGATCCTGCTGTCAT+GGG | 0.527409 | 4_1:-13278402 | Msa0536310:CDS |
| AGAAGTGTGGCTGTACAAAA+GGG | 0.529709 | 4_1:-13279031 | Msa0536310:CDS |
| ATTTCATGCTTACAGCAGCC+TGG | 0.533043 | 4_1:+13279595 | None:intergenic |
| CGAGACTGTCTTCTTCCTAT+GGG | 0.538873 | 4_1:-13279672 | Msa0536310:CDS |
| GCAGCTGGAATAGCAAAAGC+TGG | 0.539208 | 4_1:+13278372 | None:intergenic |
| CCAGCTGCAGTGAAATCTGC+TGG | 0.541500 | 4_1:-13278357 | Msa0536310:CDS |
| TGTTCTGCTGGACAAACTGG+TGG | 0.541501 | 4_1:-13282226 | Msa0536310:CDS |
| CGAGATGAAGCGCCGCGGAA+AGG | 0.545287 | 4_1:-13277644 | Msa0536310:CDS |
| TGATTTGTATGAAATAAATG+AGG | 0.551392 | 4_1:-13278316 | Msa0536310:intron |
| TTGCTGCTTACATAAAAGCT+GGG | 0.552144 | 4_1:-13280401 | Msa0536310:CDS |
| TACCTGAAGATTCCAAGAAT+AGG | 0.554484 | 4_1:+13279004 | None:intergenic |
| GAAATTAGGTCGAGTCTCAC+AGG | 0.560910 | 4_1:-13279508 | Msa0536310:intron |
| GGACCAACACCCATGACAGC+AGG | 0.561197 | 4_1:+13278393 | None:intergenic |
| GACAAGGCAGGAGCAAGACC+AGG | 0.566383 | 4_1:-13279613 | Msa0536310:CDS |
| ACAGTCTCGGGCTTGTGCAA+AGG | 0.567166 | 4_1:+13279686 | None:intergenic |
| CCATAGGAAGAAGACAGTCT+CGG | 0.567982 | 4_1:+13279673 | None:intergenic |
| AATGTGGAACCATGTGAAGT+AGG | 0.571979 | 4_1:-13280835 | Msa0536310:CDS |
| AAGGATGGAACCACAACTGC+AGG | 0.572568 | 4_1:-13279237 | Msa0536310:intron |
| AGTTAGTGATGGTGCAGCAG+CGG | 0.577291 | 4_1:-13279068 | Msa0536310:CDS |
| TAAAGGATGTCCAAAAGCCA+TGG | 0.584140 | 4_1:+13278130 | None:intergenic |
| GAGCTGCTGCAGTATTTGAA+CGG | 0.585911 | 4_1:-13277454 | Msa0536310:CDS |
| CAATGTCAATGGTGGTGCCA+TGG | 0.590035 | 4_1:-13278147 | Msa0536310:CDS |
| CGCAACGTTACGGTGTGACA+AGG | 0.592581 | 4_1:-13279629 | Msa0536310:CDS |
| TTCTCAGAAGTTATTCCCAT+AGG | 0.594952 | 4_1:+13279657 | None:intergenic |
| AATCATTCCAGTTTCTACAA+AGG | 0.595392 | 4_1:-13279444 | Msa0536310:intron |
| ACGTTACGGTGTGACAAGGC+AGG | 0.596441 | 4_1:-13279625 | Msa0536310:CDS |
| AAGAGCAATTGAGTGCAGAA+TGG | 0.597887 | 4_1:-13280773 | Msa0536310:CDS |
| TCTACTTGCCTCAGTTCTCA+AGG | 0.598314 | 4_1:-13281538 | Msa0536310:intron |
| AACCCTAGGAAAGCTACAGA+TGG | 0.599977 | 4_1:+13277193 | None:intergenic |
| GCTATTTGCAAAGCAAAGCG+TGG | 0.605886 | 4_1:-13281588 | Msa0536310:CDS |
| AGAAAATTGAGTAAACGCGA+TGG | 0.624476 | 4_1:+13282528 | None:intergenic |
| TTTCAATGTATATGAAAACA+CGG | 0.641484 | 4_1:+13282617 | None:intergenic |
| AATGCTAGCCAAGTTAGTGA+TGG | 0.641945 | 4_1:-13279079 | Msa0536310:CDS |
| ACAAAGGTCAATGTCAATGG+TGG | 0.646397 | 4_1:-13278155 | Msa0536310:CDS |
| CGTGATAGAGAAAACAAATG+TGG | 0.657771 | 4_1:-13280851 | Msa0536310:CDS |
| AATGAGATAAGGAACAATCA+CGG | 0.657909 | 4_1:+13277088 | None:intergenic |
| ACTATGTCGCCTACTTCACA+TGG | 0.663818 | 4_1:+13280826 | None:intergenic |
| TCTTCGCAAAACTAACCCAA+AGG | 0.670195 | 4_1:-13280230 | Msa0536310:intron |
| TGTCTATTAACAGTTCGAAG+CGG | 0.673883 | 4_1:+13280456 | None:intergenic |
| GAAGTGTGGCTGTACAAAAG+GGG | 0.677244 | 4_1:-13279030 | Msa0536310:CDS |
| ATTGGGGCTTGATCCAACAA+AGG | 0.682113 | 4_1:-13278171 | Msa0536310:CDS |
| CAAAGCGACAATCCTTTCCG+CGG | 0.684658 | 4_1:+13277632 | None:intergenic |
| GCTTCTCATGAAGAGAAGTG+TGG | 0.688912 | 4_1:-13279044 | Msa0536310:CDS |
| ATTTGCAAAGCAAAGCGTGG+GGG | 0.689702 | 4_1:-13281585 | Msa0536310:CDS |
| AAAACTTACAGAGAGATGAG+TGG | 0.693438 | 4_1:+13282340 | None:intergenic |
| TGGTGGATCTGAAAATGATG+TGG | 0.696807 | 4_1:-13282209 | Msa0536310:CDS |
| AGAAGTTACCTTGAGAACTG+AGG | 0.708645 | 4_1:+13281530 | None:intergenic |
| TATTTGCAAAGCAAAGCGTG+GGG | 0.719147 | 4_1:-13281586 | Msa0536310:CDS |
| TTGAACGAGATGAAGCGCCG+CGG | 0.753752 | 4_1:-13277649 | Msa0536310:CDS |
| GCTGCTGCAGTATTTGAACG+GGG | 0.756187 | 4_1:-13277452 | Msa0536310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTATTTTTATAGTTGT+TGG | - | chr4_1:13277154-13277173 | Msa0536310:three_prime_UTR | 15.0% |
| !!! | TTGTTATTTTTATAGTTGTT+GGG | - | chr4_1:13277155-13277174 | Msa0536310:three_prime_UTR | 15.0% |
| !!! | TAATTTTTTCAGTTTTGTTA+AGG | - | chr4_1:13278055-13278074 | Msa0536310:intron | 15.0% |
| !!! | AATTTTTTCAGTTTTGTTAA+GGG | - | chr4_1:13278056-13278075 | Msa0536310:intron | 15.0% |
| !!! | ACTGTTTATTTTTTTTTATC+TGG | - | chr4_1:13278392-13278411 | Msa0536310:CDS | 15.0% |
| !!! | CTGTTTATTTTTTTTTATCT+GGG | - | chr4_1:13278393-13278412 | Msa0536310:CDS | 15.0% |
| !!! | AACCTTTTCATTATTTTAAT+AGG | - | chr4_1:13280009-13280028 | Msa0536310:intron | 15.0% |
| !! | AACCTATTAAAATAATGAAA+AGG | + | chr4_1:13280014-13280033 | None:intergenic | 15.0% |
| !! | AATCTATGAAAAGATTATAA+AGG | - | chr4_1:13280173-13280192 | Msa0536310:intron | 15.0% |
| !!! | AATTCTTTTAATGTGAAATT+AGG | - | chr4_1:13280202-13280221 | Msa0536310:intron | 15.0% |
| !!! | TTTTAAAAGAAAATTCATCT+TGG | + | chr4_1:13280318-13280337 | None:intergenic | 15.0% |
| !! | TAAATACAAACTTATAAAAC+AGG | - | chr4_1:13280970-13280989 | Msa0536310:intron | 15.0% |
| !! | ATTTGTGTAATATTTACAAT+AGG | + | chr4_1:13281031-13281050 | None:intergenic | 15.0% |
| !! | TTGTAAATATTACACAAATT+TGG | - | chr4_1:13281032-13281051 | Msa0536310:intron | 15.0% |
| !!! | TTTACTGTTTTTAAATTTGA+AGG | + | chr4_1:13281273-13281292 | None:intergenic | 15.0% |
| !! | GAAAGGAAAAATAATAATTA+AGG | - | chr4_1:13282433-13282452 | Msa0536310:exon | 15.0% |
| !! | TTTCAATGTATATGAAAACA+CGG | + | chr4_1:13277110-13277129 | None:intergenic | 20.0% |
| !! | AAGACAAATACTAGAAAATA+TGG | - | chr4_1:13277289-13277308 | Msa0536310:intron | 20.0% |
| !! | AGTTCTTAGATTAATATTGA+AGG | - | chr4_1:13277551-13277570 | Msa0536310:intron | 20.0% |
| !! | TAGTAATAATTCGAAACAAA+TGG | + | chr4_1:13277963-13277982 | None:intergenic | 20.0% |
| !!! | AACTTCTGACTTTTAATTTA+CGG | - | chr4_1:13278087-13278106 | Msa0536310:intron | 20.0% |
| !! | TAAGTTCTATCATAATCTAA+AGG | + | chr4_1:13278762-13278781 | None:intergenic | 20.0% |
| !! | TTATAATCAATCAGAAAATG+TGG | + | chr4_1:13279740-13279759 | None:intergenic | 20.0% |
| !! | AAGTTTCAAAGTAAAATATG+TGG | + | chr4_1:13279975-13279994 | None:intergenic | 20.0% |
| !!! | GATTTTGTTTATAAAGTTTG+TGG | - | chr4_1:13280360-13280379 | Msa0536310:intron | 20.0% |
| !!! | TTCTTCTTTTGCTAAATTTT+TGG | - | chr4_1:13280522-13280541 | Msa0536310:intron | 20.0% |
| !! | TCAATATTTATCTAGATACA+TGG | - | chr4_1:13280889-13280908 | Msa0536310:intron | 20.0% |
| !!! | TGATTTGTATGAAATAAATG+AGG | - | chr4_1:13281408-13281427 | Msa0536310:intron | 20.0% |
| !! | AACTAGAGATAATGAAATTT+CGG | + | chr4_1:13281726-13281745 | None:intergenic | 20.0% |
| !!! | TTCAATTTTTACTTCATTAG+TGG | + | chr4_1:13281790-13281809 | None:intergenic | 20.0% |
| !! | GTTTAATAAGAAGACATTAA+GGG | + | chr4_1:13281867-13281886 | None:intergenic | 20.0% |
| !!! | TAATATTTTAGTGTACTCTT+TGG | + | chr4_1:13281889-13281908 | None:intergenic | 20.0% |
| !! | GTACACTAAAATATTAAGAA+AGG | - | chr4_1:13281893-13281912 | Msa0536310:intron | 20.0% |
| !! | TTGAAATAAGTATAAGAGAA+AGG | - | chr4_1:13282416-13282435 | Msa0536310:CDS | 20.0% |
| !! | ATCAATAAATTATGTTGTTC+TGG | - | chr4_1:13282585-13282604 | Msa0536310:five_prime_UTR | 20.0% |
| ! | ATGATGAATGATATAGAAAG+TGG | + | chr4_1:13277234-13277253 | None:intergenic | 25.0% |
| !! | ATTAATATTGAAGGTGTATC+TGG | - | chr4_1:13277560-13277579 | Msa0536310:intron | 25.0% |
| ! | TACAACATATTTGTCTATCT+CGG | + | chr4_1:13277704-13277723 | None:intergenic | 25.0% |
| ! | ATATTGAAGATGTGTTTGTT+TGG | - | chr4_1:13277890-13277909 | Msa0536310:intron | 25.0% |
| ! | ATTGGTTACTATAAGAAGAT+TGG | - | chr4_1:13278446-13278465 | Msa0536310:intron | 25.0% |
| ! | GATTAGTGAACATTTATAAC+AGG | - | chr4_1:13278508-13278527 | Msa0536310:intron | 25.0% |
| ! | ATAACAGGATTTATCAATTG+TGG | - | chr4_1:13278523-13278542 | Msa0536310:intron | 25.0% |
| ! | TCATGAATAAGAAATCATAG+GGG | + | chr4_1:13278840-13278859 | None:intergenic | 25.0% |
| ! | CTCATGAATAAGAAATCATA+GGG | + | chr4_1:13278841-13278860 | None:intergenic | 25.0% |
| !! | TCTTATTTGATGAAGGAATT+GGG | - | chr4_1:13279433-13279452 | Msa0536310:intron | 25.0% |
| ! | ATGACACAAGATAATATTTC+AGG | - | chr4_1:13279471-13279490 | Msa0536310:CDS | 25.0% |
| ! | ATTTGAAAAATGCAACTTCA+AGG | + | chr4_1:13279522-13279541 | None:intergenic | 25.0% |
| ! | AATGTGAATTGAATAGACTT+TGG | - | chr4_1:13279582-13279601 | Msa0536310:intron | 25.0% |
| ! | AGAAAACTTCATTACAATCT+AGG | + | chr4_1:13279916-13279935 | None:intergenic | 25.0% |
| ! | GTAAAATATGTGGAATTGAT+AGG | + | chr4_1:13279965-13279984 | None:intergenic | 25.0% |
| !!! | ATTATTGTTTCTGTTGATGA+TGG | - | chr4_1:13280409-13280428 | Msa0536310:CDS | 25.0% |
| ! | TGCAGTTAAATATAGTTAGA+GGG | + | chr4_1:13280622-13280641 | None:intergenic | 25.0% |
| ! | TCTAACTATATTTAACTGCA+GGG | - | chr4_1:13280622-13280641 | Msa0536310:intron | 25.0% |
| ! | ACTGTTTACTCATATCATTA+TGG | + | chr4_1:13280748-13280767 | None:intergenic | 25.0% |
| ! | TATCTAATAATGTATTTCCC+AGG | + | chr4_1:13280952-13280971 | None:intergenic | 25.0% |
| ! | ACTTTATGTTGCTATGATAA+AGG | - | chr4_1:13281128-13281147 | Msa0536310:intron | 25.0% |
| ! | AAAAATGTTCCTAATTCGAT+AGG | - | chr4_1:13281205-13281224 | Msa0536310:intron | 25.0% |
| ! | AACAGTAAATTCAATGTTGT+AGG | - | chr4_1:13281284-13281303 | Msa0536310:intron | 25.0% |
| ! | AATGTGCAATAGAAAGTTAT+TGG | + | chr4_1:13281463-13281482 | None:intergenic | 25.0% |
| ! | ATGAAATATGTGAAGTAAAC+AGG | + | chr4_1:13281651-13281670 | None:intergenic | 25.0% |
| !!! | TACAATATTCTTTTTAGCAG+TGG | + | chr4_1:13281684-13281703 | None:intergenic | 25.0% |
| ! | GGTTTAATAAGAAGACATTA+AGG | + | chr4_1:13281868-13281887 | None:intergenic | 25.0% |
| !! | ATTAAATCAACTTGTTCAAC+TGG | + | chr4_1:13281978-13281997 | None:intergenic | 25.0% |
| ! | TACATTCAGGTACTAATAAT+CGG | + | chr4_1:13282212-13282231 | None:intergenic | 25.0% |
| ! | TTTGTACTGTTATACATTTC+AGG | - | chr4_1:13282236-13282255 | Msa0536310:CDS | 25.0% |
| ! | AGAATTTGTGGAAGTTTAAA+TGG | - | chr4_1:13282304-13282323 | Msa0536310:intron | 25.0% |
| ! | TTTTTATAGTTGTTGGGACT+TGG | - | chr4_1:13277161-13277180 | Msa0536310:three_prime_UTR | 30.0% |
| ! | TTTTATAGTTGTTGGGACTT+GGG | - | chr4_1:13277162-13277181 | Msa0536310:three_prime_UTR | 30.0% |
| TAAGATGAAGCAACTGAATT+TGG | + | chr4_1:13277359-13277378 | None:intergenic | 30.0% | |
| !!! | TTGTTTTGTTTTTCACTTGC+AGG | - | chr4_1:13277467-13277486 | Msa0536310:CDS | 30.0% |
| TGTGTTAAATGTTATGTGTG+CGG | - | chr4_1:13277655-13277674 | Msa0536310:CDS | 30.0% | |
| GAGATAGACAAATATGTTGT+AGG | - | chr4_1:13277703-13277722 | Msa0536310:intron | 30.0% | |
| AAATATGTTGTAGGTGTGTA+TGG | - | chr4_1:13277712-13277731 | Msa0536310:intron | 30.0% | |
| AATTATTACTAGTGTTGTCG+TGG | - | chr4_1:13277972-13277991 | Msa0536310:intron | 30.0% | |
| !! | CTTCTTGGATTAGTCAAAAT+TGG | - | chr4_1:13278212-13278231 | Msa0536310:intron | 30.0% |
| AAACGATTGATCATGTAGTT+CGG | + | chr4_1:13278358-13278377 | None:intergenic | 30.0% | |
| ! | TTATCTGGGTTTGTTTGAAT+CGG | - | chr4_1:13278407-13278426 | Msa0536310:CDS | 30.0% |
| ! | CACTAATCCATTTTCTTACT+CGG | + | chr4_1:13278496-13278515 | None:intergenic | 30.0% |
| ! | AAATGTAGGATTTGCTTTAG+TGG | - | chr4_1:13278647-13278666 | Msa0536310:intron | 30.0% |
| !! | AATGTGTCATTTGAGGAAAA+CGG | - | chr4_1:13278672-13278691 | Msa0536310:intron | 30.0% |
| GCTCATGAATAAGAAATCAT+AGG | + | chr4_1:13278842-13278861 | None:intergenic | 30.0% | |
| !! | CACATTTGTTTTCTCTATCA+CGG | + | chr4_1:13278875-13278894 | None:intergenic | 30.0% |
| ACAAGCACATGATATTTCAT+TGG | - | chr4_1:13279034-13279053 | Msa0536310:CDS | 30.0% | |
| ! | ATATATCATGTGCGTGTTTT+TGG | + | chr4_1:13279117-13279136 | None:intergenic | 30.0% |
| GTTAATAGACAATGTTCATC+TGG | - | chr4_1:13279280-13279299 | Msa0536310:CDS | 30.0% | |
| GTCATGACCTTGTAATAATT+TGG | - | chr4_1:13279396-13279415 | Msa0536310:intron | 30.0% | |
| GATTAGGCCAAATTATTACA+AGG | + | chr4_1:13279406-13279425 | None:intergenic | 30.0% | |
| CAAATAAGAGGAAGAAGATT+AGG | + | chr4_1:13279422-13279441 | None:intergenic | 30.0% | |
| ! | TTCTTCCTCTTATTTGATGA+AGG | - | chr4_1:13279426-13279445 | Msa0536310:intron | 30.0% |
| CAATTCCTTCATCAAATAAG+AGG | + | chr4_1:13279434-13279453 | None:intergenic | 30.0% | |
| ! | CTCTTATTTGATGAAGGAAT+TGG | - | chr4_1:13279432-13279451 | Msa0536310:intron | 30.0% |
| CTTATTTGATGAAGGAATTG+GGG | - | chr4_1:13279434-13279453 | Msa0536310:intron | 30.0% | |
| AACTGAAGAGTTTAGTTATC+AGG | + | chr4_1:13279546-13279565 | None:intergenic | 30.0% | |
| TTCATAAAAACTCCCAATCA+CGG | + | chr4_1:13279623-13279642 | None:intergenic | 30.0% | |
| CTGAAGAACTTATTGAAATG+AGG | + | chr4_1:13279676-13279695 | None:intergenic | 30.0% | |
| AATCATTCCAGTTTCTACAA+AGG | - | chr4_1:13280280-13280299 | Msa0536310:intron | 30.0% | |
| GCAGTTAAATATAGTTAGAG+GGG | + | chr4_1:13280621-13280640 | None:intergenic | 30.0% | |
| CTGCAGTTAAATATAGTTAG+AGG | + | chr4_1:13280623-13280642 | None:intergenic | 30.0% | |
| CTCTAACTATATTTAACTGC+AGG | - | chr4_1:13280621-13280640 | Msa0536310:intron | 30.0% | |
| ATATGAGTAAACAGTCACTT+TGG | - | chr4_1:13280753-13280772 | Msa0536310:CDS | 30.0% | |
| TTACTAAAAAGACACGTTCA+TGG | + | chr4_1:13280846-13280865 | None:intergenic | 30.0% | |
| ! | TTATCTAGATACATGGACTA+AGG | - | chr4_1:13280896-13280915 | Msa0536310:intron | 30.0% |
| !! | ATTTAATTAGCTTGTCCTAC+AGG | + | chr4_1:13281061-13281080 | None:intergenic | 30.0% |
| ! | TTGCACATTTTCTAAGCATT+TGG | - | chr4_1:13281474-13281493 | Msa0536310:intron | 30.0% |
| TGTTTATTCCTGCAAGAAAT+TGG | - | chr4_1:13281535-13281554 | Msa0536310:intron | 30.0% | |
| GTTTATTCCTGCAAGAAATT+GGG | - | chr4_1:13281536-13281555 | Msa0536310:intron | 30.0% | |
| TTTATTCCTGCAAGAAATTG+GGG | - | chr4_1:13281537-13281556 | Msa0536310:intron | 30.0% | |
| AAATATCTCAACTTTACCTG+TGG | + | chr4_1:13281624-13281643 | None:intergenic | 30.0% | |
| !! | ATTCTTTTTAGCAGTGGAAA+TGG | + | chr4_1:13281678-13281697 | None:intergenic | 30.0% |
| !!! | CAGAGTTTTAGAAAGTAAAC+AGG | - | chr4_1:13281810-13281829 | Msa0536310:intron | 30.0% |
| ACAGCAAAAGAAATGGAATA+AGG | + | chr4_1:13282156-13282175 | None:intergenic | 30.0% | |
| !! | ATCGGTTTATTTTTCTCCTT+AGG | + | chr4_1:13282194-13282213 | None:intergenic | 30.0% |
| TTAGTGTACAAAAACCTCAA+AGG | + | chr4_1:13282557-13282576 | None:intergenic | 30.0% | |
| AGAAAATTGAGTAAACGCGA+TGG | + | chr4_1:13277199-13277218 | None:intergenic | 35.0% | |
| AAAACTTACAGAGAGATGAG+TGG | + | chr4_1:13277387-13277406 | None:intergenic | 35.0% | |
| ACGAAACATTGACATAGACA+TGG | + | chr4_1:13277857-13277876 | None:intergenic | 35.0% | |
| ATGTCTATGTCAATGTTTCG+TGG | - | chr4_1:13277856-13277875 | Msa0536310:intron | 35.0% | |
| TTGAAGATGTGTTTGTTTGG+TGG | - | chr4_1:13277893-13277912 | Msa0536310:intron | 35.0% | |
| CTGAATCTAACTACATGTGT+CGG | + | chr4_1:13277935-13277954 | None:intergenic | 35.0% | |
| ! | CAGAGCTAGAGTATTAAACA+TGG | - | chr4_1:13278252-13278271 | Msa0536310:intron | 35.0% |
| ATTACTCACACATCATAGCA+TGG | - | chr4_1:13278568-13278587 | Msa0536310:intron | 35.0% | |
| TAGATAACTCCTCGAAATGT+AGG | - | chr4_1:13278633-13278652 | Msa0536310:intron | 35.0% | |
| AAAGCAAATCCTACATTTCG+AGG | + | chr4_1:13278645-13278664 | None:intergenic | 35.0% | |
| !! | AGTGGTTAATGTGTCATTTG+AGG | - | chr4_1:13278665-13278684 | Msa0536310:intron | 35.0% |
| CGTGATAGAGAAAACAAATG+TGG | - | chr4_1:13278873-13278892 | Msa0536310:intron | 35.0% | |
| ! | ATAGTTGTAGGCACAGTTTT+AGG | - | chr4_1:13278916-13278935 | Msa0536310:intron | 35.0% |
| ! | TGAGAGTGTAAAACTAACCT+GGG | + | chr4_1:13278996-13279015 | None:intergenic | 35.0% |
| ! | TTGAGAGTGTAAAACTAACC+TGG | + | chr4_1:13278997-13279016 | None:intergenic | 35.0% |
| AACAGTCTCTGCTTGAAAAT+TGG | + | chr4_1:13279248-13279267 | None:intergenic | 35.0% | |
| TGTCTATTAACAGTTCGAAG+CGG | + | chr4_1:13279271-13279290 | None:intergenic | 35.0% | |
| ! | TTGCTGCTTACATAAAAGCT+GGG | - | chr4_1:13279323-13279342 | Msa0536310:CDS | 35.0% |
| GAATAGACTTTGGTTGTGTT+TGG | - | chr4_1:13279592-13279611 | Msa0536310:intron | 35.0% | |
| TGTTTGGATTAACCGTGATT+GGG | - | chr4_1:13279608-13279627 | Msa0536310:CDS | 35.0% | |
| CAGCGTATGAATAAGAGATA+AGG | - | chr4_1:13279820-13279839 | Msa0536310:intron | 35.0% | |
| CGTATGAATAAGAGATAAGG+TGG | - | chr4_1:13279823-13279842 | Msa0536310:intron | 35.0% | |
| ! | GGATTAGTGAGTGTTATCTT+TGG | - | chr4_1:13279844-13279863 | Msa0536310:intron | 35.0% |
| !! | GTGAGTGTTATCTTTGGTTT+TGG | - | chr4_1:13279850-13279869 | Msa0536310:intron | 35.0% |
| !!! | TGTTATCTTTGGTTTTGGAG+AGG | - | chr4_1:13279855-13279874 | Msa0536310:intron | 35.0% |
| !! | TTTTGGAGAGGAATTTTGAG+TGG | - | chr4_1:13279867-13279886 | Msa0536310:intron | 35.0% |
| !! | TTTGGAGAGGAATTTTGAGT+GGG | - | chr4_1:13279868-13279887 | Msa0536310:intron | 35.0% |
| TTCTCAGAAGTTATTCCCAT+AGG | + | chr4_1:13280070-13280089 | None:intergenic | 35.0% | |
| ATTCCAGTTTCTACAAAGGT+GGG | - | chr4_1:13280284-13280303 | Msa0536310:intron | 35.0% | |
| AAGTTTGTGGATCCTAAAAC+TGG | - | chr4_1:13280373-13280392 | Msa0536310:intron | 35.0% | |
| ! | TGTTTCTTCTCTCCAGTTTT+AGG | + | chr4_1:13280388-13280407 | None:intergenic | 35.0% |
| !! | TTTCTGTTGATGATGGTATC+CGG | - | chr4_1:13280416-13280435 | Msa0536310:CDS | 35.0% |
| AGATCTACCAAATTTGCGTT+TGG | + | chr4_1:13280442-13280461 | None:intergenic | 35.0% | |
| GGACATATTCACAAGGTATA+AGG | + | chr4_1:13280600-13280619 | None:intergenic | 35.0% | |
| TTCCTATTCTTGGAATCTTC+AGG | - | chr4_1:13280718-13280737 | Msa0536310:intron | 35.0% | |
| TACCTGAAGATTCCAAGAAT+AGG | + | chr4_1:13280723-13280742 | None:intergenic | 35.0% | |
| ! | GGACTAAGGTATCTAATACA+TGG | - | chr4_1:13280910-13280929 | Msa0536310:intron | 35.0% |
| ! | GGTATCTAATACATGGACTA+AGG | - | chr4_1:13280917-13280936 | Msa0536310:intron | 35.0% |
| GACTAAGGAATTAGATACCT+GGG | - | chr4_1:13280932-13280951 | Msa0536310:intron | 35.0% | |
| TAAAACAGGCATCTAGATGT+AGG | - | chr4_1:13280984-13281003 | Msa0536310:intron | 35.0% | |
| AAAACAGGCATCTAGATGTA+GGG | - | chr4_1:13280985-13281004 | Msa0536310:intron | 35.0% | |
| CTAATTCGATAGGAAAAGCT+CGG | - | chr4_1:13281215-13281234 | Msa0536310:intron | 35.0% | |
| ! | CTAAGCATTTGGCAATTTTG+TGG | - | chr4_1:13281485-13281504 | Msa0536310:intron | 35.0% |
| GAGTTTCTGATGCTTACTAT+CGG | - | chr4_1:13282001-13282020 | Msa0536310:intron | 35.0% | |
| CAGTACAAACTCTTACATTC+AGG | + | chr4_1:13282225-13282244 | None:intergenic | 35.0% | |
| !! | CTGTTATACATTTCAGGTTC+TGG | - | chr4_1:13282242-13282261 | Msa0536310:intron | 35.0% |
| !! | ATACATTTCAGGTTCTGGTA+TGG | - | chr4_1:13282247-13282266 | Msa0536310:intron | 35.0% |
| !! | TACATTTCAGGTTCTGGTAT+GGG | - | chr4_1:13282248-13282267 | Msa0536310:intron | 35.0% |
| ! | TTTTGTTCTGCTGGACAAAC+TGG | - | chr4_1:13277495-13277514 | Msa0536310:intron | 40.0% |
| ! | TGGTGGATCTGAAAATGATG+TGG | - | chr4_1:13277515-13277534 | Msa0536310:intron | 40.0% |
| GTATGGTGTTTGACATGTGT+AGG | - | chr4_1:13277729-13277748 | Msa0536310:intron | 40.0% | |
| CTATGTCAATGTTTCGTGGA+TGG | - | chr4_1:13277860-13277879 | Msa0536310:intron | 40.0% | |
| !! | TGTTTGGTGGTGTCATTAAC+AGG | - | chr4_1:13277906-13277925 | Msa0536310:intron | 40.0% |
| CTATTTGCAAAGCAAAGCGT+GGG | - | chr4_1:13278137-13278156 | Msa0536310:CDS | 40.0% | |
| TATTTGCAAAGCAAAGCGTG+GGG | - | chr4_1:13278138-13278157 | Msa0536310:CDS | 40.0% | |
| AGAAGTTACCTTGAGAACTG+AGG | + | chr4_1:13278197-13278216 | None:intergenic | 40.0% | |
| CAGTTCTCAAGGTAACTTCT+TGG | - | chr4_1:13278197-13278216 | Msa0536310:CDS | 40.0% | |
| TAACAGTCACTCTGTTGTCA+AGG | - | chr4_1:13278317-13278336 | Msa0536310:CDS | 40.0% | |
| !! | GGATTTGCTGCTCTAACAAT+TGG | - | chr4_1:13278428-13278447 | Msa0536310:intron | 40.0% |
| ! | CCATTTTCTTACTCGGTAGT+TGG | + | chr4_1:13278489-13278508 | None:intergenic | 40.0% |
| CCAACTACCGAGTAAGAAAA+TGG | - | chr4_1:13278486-13278505 | Msa0536310:intron | 40.0% | |
| CAGGATTTATCAATTGTGGC+TGG | - | chr4_1:13278527-13278546 | Msa0536310:intron | 40.0% | |
| GAGGAAAACGGTTGTATGTT+TGG | - | chr4_1:13278684-13278703 | Msa0536310:intron | 40.0% | |
| CTTATTCATGAGCTCTCTGT+AGG | - | chr4_1:13278849-13278868 | Msa0536310:intron | 40.0% | |
| AATGTGGAACCATGTGAAGT+AGG | - | chr4_1:13278889-13278908 | Msa0536310:intron | 40.0% | |
| TCAATTGCTCTTTCTGATCC+TGG | + | chr4_1:13278943-13278962 | None:intergenic | 40.0% | |
| AAGAGCAATTGAGTGCAGAA+TGG | - | chr4_1:13278951-13278970 | Msa0536310:intron | 40.0% | |
| ! | AGAATGGCTGCATTTTATGC+TGG | - | chr4_1:13278967-13278986 | Msa0536310:intron | 40.0% |
| AGTCTTGCTGACACTATCTA+CGG | - | chr4_1:13279063-13279082 | Msa0536310:CDS | 40.0% | |
| ! | GTTGCTGCTTACATAAAAGC+TGG | - | chr4_1:13279322-13279341 | Msa0536310:CDS | 40.0% |
| AAAGCTGGGTTCTATGACAT+TGG | - | chr4_1:13279337-13279356 | Msa0536310:CDS | 40.0% | |
| TCTTCGCAAAACTAACCCAA+AGG | - | chr4_1:13279494-13279513 | Msa0536310:CDS | 40.0% | |
| ! | TGCAACTTCAAGGTACCTTT+GGG | + | chr4_1:13279512-13279531 | None:intergenic | 40.0% |
| ! | ATGCAACTTCAAGGTACCTT+TGG | + | chr4_1:13279513-13279532 | None:intergenic | 40.0% |
| GTGTTTGGATTAACCGTGAT+TGG | - | chr4_1:13279607-13279626 | Msa0536310:intron | 40.0% | |
| !! | ATTTTGAGTGGGAGAGAACT+AGG | - | chr4_1:13279879-13279898 | Msa0536310:intron | 40.0% |
| CATTCCAGTTTCTACAAAGG+TGG | - | chr4_1:13280283-13280302 | Msa0536310:intron | 40.0% | |
| AAGCCTGCATTCAAAAAGGA+TGG | - | chr4_1:13280472-13280491 | Msa0536310:intron | 40.0% | |
| ! | GTTCCATCCTTTTTGAATGC+AGG | + | chr4_1:13280478-13280497 | None:intergenic | 40.0% |
| TTCTTGATTACCTGCAGTTG+TGG | + | chr4_1:13280500-13280519 | None:intergenic | 40.0% | |
| ACAACTGCAGGTAATCAAGA+AGG | - | chr4_1:13280499-13280518 | Msa0536310:intron | 40.0% | |
| TAAACAGAGCACAAGGAACT+TGG | + | chr4_1:13280550-13280569 | None:intergenic | 40.0% | |
| ACGAAGTTAAACAGAGCACA+AGG | + | chr4_1:13280557-13280576 | None:intergenic | 40.0% | |
| AAGGAATGCAGGCTACATAT+GGG | + | chr4_1:13280581-13280600 | None:intergenic | 40.0% | |
| TAAGGAATGCAGGCTACATA+TGG | + | chr4_1:13280582-13280601 | None:intergenic | 40.0% | |
| TCACAAGGTATAAGGAATGC+AGG | + | chr4_1:13280592-13280611 | None:intergenic | 40.0% | |
| TTAGAGGGGACATATTCACA+AGG | + | chr4_1:13280607-13280626 | None:intergenic | 40.0% | |
| AATGCTAGCCAAGTTAGTGA+TGG | - | chr4_1:13280645-13280664 | Msa0536310:intron | 40.0% | |
| ! | AGAAGTGTGGCTGTACAAAA+GGG | - | chr4_1:13280693-13280712 | Msa0536310:intron | 40.0% |
| GGACTAAGGAATTAGATACC+TGG | - | chr4_1:13280931-13280950 | Msa0536310:intron | 40.0% | |
| ACACAAATTTGGCATCCTGT+AGG | - | chr4_1:13281043-13281062 | Msa0536310:intron | 40.0% | |
| ! | CGAGCTTTTCCTATCGAATT+AGG | + | chr4_1:13281217-13281236 | None:intergenic | 40.0% |
| !! | GCAATTTTGTGGTCTTGAGT+AGG | - | chr4_1:13281496-13281515 | Msa0536310:intron | 40.0% |
| CCATTGACATTGACCTTTGT+TGG | + | chr4_1:13281569-13281588 | None:intergenic | 40.0% | |
| CCAACAAAGGTCAATGTCAA+TGG | - | chr4_1:13281566-13281585 | Msa0536310:CDS | 40.0% | |
| ACAAAGGTCAATGTCAATGG+TGG | - | chr4_1:13281569-13281588 | Msa0536310:CDS | 40.0% | |
| TAAAGGATGTCCAAAAGCCA+TGG | + | chr4_1:13281597-13281616 | None:intergenic | 40.0% | |
| ! | ATGGCTTTTGGACATCCTTT+AGG | - | chr4_1:13281596-13281615 | Msa0536310:CDS | 40.0% |
| TACTTCATTAGTGGCTCGAA+TGG | + | chr4_1:13281781-13281800 | None:intergenic | 40.0% | |
| CAAACACTATGCATGCTTCT+AGG | + | chr4_1:13281921-13281940 | None:intergenic | 40.0% | |
| GGTGTAATCTCGATGTGTAT+AGG | - | chr4_1:13282114-13282133 | Msa0536310:intron | 40.0% | |
| GTCTGCTACAGCAAAAGAAA+TGG | + | chr4_1:13282163-13282182 | None:intergenic | 40.0% | |
| TAGCAGACTATGTATGCCTA+AGG | - | chr4_1:13282175-13282194 | Msa0536310:intron | 40.0% | |
| TCACAAGTATGCTTGATCTC+TGG | - | chr4_1:13282350-13282369 | Msa0536310:CDS | 40.0% | |
| AAAAACCTCAAAGGAACCCT+AGG | + | chr4_1:13282548-13282567 | None:intergenic | 40.0% | |
| ! | CAGGCTTCATTTTGTTCTGC+TGG | - | chr4_1:13277486-13277505 | Msa0536310:intron | 45.0% |
| TTGAACCTAACAACGTGCGT+TGG | + | chr4_1:13277771-13277790 | None:intergenic | 45.0% | |
| CACCAGACAAGACACAAACA+CGG | + | chr4_1:13277833-13277852 | None:intergenic | 45.0% | |
| GCTATTTGCAAAGCAAAGCG+TGG | - | chr4_1:13278136-13278155 | Msa0536310:CDS | 45.0% | |
| ATTTGCAAAGCAAAGCGTGG+GGG | - | chr4_1:13278139-13278158 | Msa0536310:CDS | 45.0% | |
| ACTGAGGCAAGTAGATCATC+TGG | + | chr4_1:13278181-13278200 | None:intergenic | 45.0% | |
| TCTACTTGCCTCAGTTCTCA+AGG | - | chr4_1:13278186-13278205 | Msa0536310:CDS | 45.0% | |
| TCACTCTGTTGTCAAGGCAT+AGG | - | chr4_1:13278323-13278342 | Msa0536310:CDS | 45.0% | |
| GTACAGTTGAGAAGCTGCTA+AGG | - | chr4_1:13278708-13278727 | Msa0536310:intron | 45.0% | |
| ACTATGTCGCCTACTTCACA+TGG | + | chr4_1:13278901-13278920 | None:intergenic | 45.0% | |
| GAAGTAGGCGACATAGTTGT+AGG | - | chr4_1:13278904-13278923 | Msa0536310:intron | 45.0% | |
| !!! | GCATTTTATGCTGGTTTCCC+AGG | - | chr4_1:13278976-13278995 | Msa0536310:intron | 45.0% |
| TTTGATGAAGGAATTGGGGC+TGG | - | chr4_1:13279438-13279457 | Msa0536310:intron | 45.0% | |
| CATAGGAAGAAGACAGTCTC+GGG | + | chr4_1:13280053-13280072 | None:intergenic | 45.0% | |
| CCATAGGAAGAAGACAGTCT+CGG | + | chr4_1:13280054-13280073 | None:intergenic | 45.0% | |
| CGAGACTGTCTTCTTCCTAT+GGG | - | chr4_1:13280052-13280071 | Msa0536310:intron | 45.0% | |
| GAGAATGTTGCGCAACGTTA+CGG | - | chr4_1:13280085-13280104 | Msa0536310:intron | 45.0% | |
| ATTTCATGCTTACAGCAGCC+TGG | + | chr4_1:13280132-13280151 | None:intergenic | 45.0% | |
| GAAATTAGGTCGAGTCTCAC+AGG | - | chr4_1:13280216-13280235 | Msa0536310:intron | 45.0% | |
| GAACCCACCTTTGTAGAAAC+TGG | + | chr4_1:13280290-13280309 | None:intergenic | 45.0% | |
| TATCCGGCCAAACGCAAATT+TGG | - | chr4_1:13280432-13280451 | Msa0536310:CDS | 45.0% | |
| CTACCAAATTTGCGTTTGGC+CGG | + | chr4_1:13280438-13280457 | None:intergenic | 45.0% | |
| GCTGAAGCCTGCATTCAAAA+AGG | - | chr4_1:13280468-13280487 | Msa0536310:intron | 45.0% | |
| GCTTCTCATGAAGAGAAGTG+TGG | - | chr4_1:13280680-13280699 | Msa0536310:intron | 45.0% | |
| ! | GAGAAGTGTGGCTGTACAAA+AGG | - | chr4_1:13280692-13280711 | Msa0536310:intron | 45.0% |
| GAAGTGTGGCTGTACAAAAG+GGG | - | chr4_1:13280694-13280713 | Msa0536310:intron | 45.0% | |
| CAAAAGGGGCTTCCTATTCT+TGG | - | chr4_1:13280708-13280727 | Msa0536310:intron | 45.0% | |
| GCATCTAGATGTAGGGACTA+GGG | - | chr4_1:13280992-13281011 | Msa0536310:intron | 45.0% | |
| ! | TGTAGGAGTTTTGCTGCTGT+TGG | - | chr4_1:13281301-13281320 | Msa0536310:intron | 45.0% |
| ATCAAGCCCCAATTTCTTGC+AGG | + | chr4_1:13281546-13281565 | None:intergenic | 45.0% | |
| ATTGGGGCTTGATCCAACAA+AGG | - | chr4_1:13281553-13281572 | Msa0536310:CDS | 45.0% | |
| TTAGTGGCTCGAATGGCATT+TGG | + | chr4_1:13281774-13281793 | None:intergenic | 45.0% | |
| GAGCTGCTGCAGTATTTGAA+CGG | - | chr4_1:13282270-13282289 | Msa0536310:intron | 45.0% | |
| AGCTGCTGCAGTATTTGAAC+GGG | - | chr4_1:13282271-13282290 | Msa0536310:intron | 45.0% | |
| ! | GGGAGACTTCTGAGAATTTG+TGG | - | chr4_1:13282292-13282311 | Msa0536310:intron | 45.0% |
| TCTCCATCTGTAGCTTTCCT+AGG | - | chr4_1:13282528-13282547 | Msa0536310:five_prime_UTR | 45.0% | |
| CTCCATCTGTAGCTTTCCTA+GGG | - | chr4_1:13282529-13282548 | Msa0536310:five_prime_UTR | 45.0% | |
| AACCCTAGGAAAGCTACAGA+TGG | + | chr4_1:13282534-13282553 | None:intergenic | 45.0% | |
| !! | TAATATTATTAATTATATAC+AGG | - | chr4_1:13281090-13281109 | Msa0536310:intron | 5.0% |
| TGTTCTGCTGGACAAACTGG+TGG | - | chr4_1:13277498-13277517 | Msa0536310:intron | 50.0% | |
| GTCCGTGTTTGTGTCTTGTC+TGG | - | chr4_1:13277828-13277847 | Msa0536310:intron | 50.0% | |
| TCTTACTCGGTAGTTGGCAG+TGG | + | chr4_1:13278483-13278502 | None:intergenic | 50.0% | |
| !!! | GTAGGCACAGTTTTAGGACC+AGG | - | chr4_1:13278922-13278941 | Msa0536310:intron | 50.0% |
| TGAAGGAATTGGGGCTGGAT+TGG | - | chr4_1:13279443-13279462 | Msa0536310:intron | 50.0% | |
| CCGAGACTGTCTTCTTCCTA+TGG | - | chr4_1:13280051-13280070 | Msa0536310:intron | 50.0% | |
| AAGGATGGAACCACAACTGC+AGG | - | chr4_1:13280487-13280506 | Msa0536310:intron | 50.0% | |
| CTGCTGCACCATCACTAACT+TGG | + | chr4_1:13280656-13280675 | None:intergenic | 50.0% | |
| ! | AGTTAGTGATGGTGCAGCAG+CGG | - | chr4_1:13280656-13280675 | Msa0536310:intron | 50.0% |
| GGCATCTAGATGTAGGGACT+AGG | - | chr4_1:13280991-13281010 | Msa0536310:intron | 50.0% | |
| TGGTGTAGATCCTGCTGTCA+TGG | - | chr4_1:13281321-13281340 | Msa0536310:intron | 50.0% | |
| GGTGTAGATCCTGCTGTCAT+GGG | - | chr4_1:13281322-13281341 | Msa0536310:intron | 50.0% | |
| GCAGCTGGAATAGCAAAAGC+TGG | + | chr4_1:13281355-13281374 | None:intergenic | 50.0% | |
| ! | CAATGTCAATGGTGGTGCCA+TGG | - | chr4_1:13281577-13281596 | Msa0536310:CDS | 50.0% |
| !!! | AATGGTGGTGCCATGGCTTT+TGG | - | chr4_1:13281584-13281603 | Msa0536310:CDS | 50.0% |
| ACTTTACCTGTGGCGCCTAA+AGG | + | chr4_1:13281614-13281633 | None:intergenic | 50.0% | |
| CAAAGCGACAATCCTTTCCG+CGG | + | chr4_1:13282095-13282114 | None:intergenic | 50.0% | |
| GCTGCTGCAGTATTTGAACG+GGG | - | chr4_1:13282272-13282291 | Msa0536310:intron | 50.0% | |
| GCTTTCCTAGGGTTCCTTTG+AGG | - | chr4_1:13282540-13282559 | Msa0536310:five_prime_UTR | 50.0% | |
| CGACACCAACGCACGTTGTT+AGG | - | chr4_1:13277763-13277782 | Msa0536310:intron | 55.0% | |
| AGCAAAGCGTGGGGGATTCA+AGG | - | chr4_1:13278147-13278166 | Msa0536310:CDS | 55.0% | |
| ACAGTCTCGGGCTTGTGCAA+AGG | + | chr4_1:13280041-13280060 | None:intergenic | 55.0% | |
| CGCAACGTTACGGTGTGACA+AGG | - | chr4_1:13280095-13280114 | Msa0536310:intron | 55.0% | |
| ACGTTACGGTGTGACAAGGC+AGG | - | chr4_1:13280099-13280118 | Msa0536310:intron | 55.0% | |
| ACCAGATGCTGTTGCAGCTG+CGG | + | chr4_1:13280246-13280265 | None:intergenic | 55.0% | |
| GATCCTGCTGTCATGGGTGT+TGG | - | chr4_1:13281328-13281347 | Msa0536310:intron | 55.0% | |
| CCAGCAGATTTCACTGCAGC+TGG | + | chr4_1:13281370-13281389 | None:intergenic | 55.0% | |
| CCAGCTGCAGTGAAATCTGC+TGG | - | chr4_1:13281367-13281386 | Msa0536310:intron | 55.0% | |
| ! | TGCCTGCTGCATTTTGCGTC+AGG | - | chr4_1:13282030-13282049 | Msa0536310:intron | 55.0% |
| CACCTGACGCAAAATGCAGC+AGG | + | chr4_1:13282035-13282054 | None:intergenic | 55.0% | |
| ! | CGCGGAAAGGATTGTCGCTT+TGG | - | chr4_1:13282093-13282112 | Msa0536310:intron | 55.0% |
| !! | CGTGCGTTGGTGTCGTGTCA+GGG | + | chr4_1:13277758-13277777 | None:intergenic | 60.0% |
| !! | ACGTGCGTTGGTGTCGTGTC+AGG | + | chr4_1:13277759-13277778 | None:intergenic | 60.0% |
| GACAAGGCAGGAGCAAGACC+AGG | - | chr4_1:13280111-13280130 | Msa0536310:intron | 60.0% | |
| GGACCAACACCCATGACAGC+AGG | + | chr4_1:13281334-13281353 | None:intergenic | 60.0% | |
| GGACATCCTTTAGGCGCCAC+AGG | - | chr4_1:13281605-13281624 | Msa0536310:intron | 60.0% | |
| GCCGCAGCTGCAACAGCATC+TGG | - | chr4_1:13280242-13280261 | Msa0536310:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 13277092 | 13282654 | 13277092 | ID=Msa0536310;Name=Msa0536310 |
| chr4_1 | mRNA | 13277092 | 13282654 | 13277092 | ID=Msa0536310-mRNA-1;Parent=Msa0536310;Name=Msa0536310-mRNA-1;_AED=0.08;_eAED=0.08;_QI=216|1|1|1|0.92|0.86|15|330|435 |
| chr4_1 | exon | 13277092 | 13277280 | 13277092 | ID=Msa0536310-mRNA-1:exon:4191;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13277301 | 13277488 | 13277301 | ID=Msa0536310-mRNA-1:exon:4190;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13277611 | 13277694 | 13277611 | ID=Msa0536310-mRNA-1:exon:4189;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13278120 | 13278228 | 13278120 | ID=Msa0536310-mRNA-1:exon:4188;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13278317 | 13278440 | 13278317 | ID=Msa0536310-mRNA-1:exon:4187;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13279007 | 13279103 | 13279007 | ID=Msa0536310-mRNA-1:exon:4186;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13279238 | 13279370 | 13279238 | ID=Msa0536310-mRNA-1:exon:4185;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13279445 | 13279522 | 13279445 | ID=Msa0536310-mRNA-1:exon:4184;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13279608 | 13279715 | 13279608 | ID=Msa0536310-mRNA-1:exon:4183;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13280231 | 13280298 | 13280231 | ID=Msa0536310-mRNA-1:exon:4182;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13280388 | 13280486 | 13280388 | ID=Msa0536310-mRNA-1:exon:4181;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13280749 | 13280875 | 13280749 | ID=Msa0536310-mRNA-1:exon:4180;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13281539 | 13281623 | 13281539 | ID=Msa0536310-mRNA-1:exon:4179;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13282199 | 13282257 | 13282199 | ID=Msa0536310-mRNA-1:exon:4178;Parent=Msa0536310-mRNA-1 |
| chr4_1 | exon | 13282349 | 13282654 | 13282349 | ID=Msa0536310-mRNA-1:exon:4177;Parent=Msa0536310-mRNA-1 |
| chr4_1 | five_prime_UTR | 13282439 | 13282654 | 13282439 | ID=Msa0536310-mRNA-1:five_prime_utr;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13282349 | 13282438 | 13282349 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13282199 | 13282257 | 13282199 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13281539 | 13281623 | 13281539 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13280749 | 13280875 | 13280749 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13280388 | 13280486 | 13280388 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13280231 | 13280298 | 13280231 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13279608 | 13279715 | 13279608 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13279445 | 13279522 | 13279445 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13279238 | 13279370 | 13279238 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13279007 | 13279103 | 13279007 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13278317 | 13278440 | 13278317 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13278120 | 13278228 | 13278120 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13277611 | 13277694 | 13277611 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | CDS | 13277442 | 13277488 | 13277442 | ID=Msa0536310-mRNA-1:cds;Parent=Msa0536310-mRNA-1 |
| chr4_1 | three_prime_UTR | 13277301 | 13277441 | 13277301 | ID=Msa0536310-mRNA-1:three_prime_utr;Parent=Msa0536310-mRNA-1 |
| chr4_1 | three_prime_UTR | 13277092 | 13277280 | 13277092 | ID=Msa0536310-mRNA-1:three_prime_utr;Parent=Msa0536310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
