Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383680 | XP_003604976.1 | 97.241 | 435 | 12 | 0 | 1 | 435 | 1 | 435 | 0.0 | 865 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383680 | sp|C8YNG6|KAT1_PETHY | 81.136 | 440 | 77 | 1 | 1 | 434 | 1 | 440 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383680 | G7JUJ9 | 97.241 | 435 | 12 | 0 | 1 | 435 | 1 | 435 | 0.0 | 865 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035390 | Msa1383680 | 0.818807 | 1.616879e-52 | -8.615850e-47 |
| Msa1353890 | Msa1383680 | 0.826317 | 2.899076e-54 | -8.615850e-47 |
| Msa1383680 | Msa1400340 | 0.814681 | 1.361089e-51 | -8.615850e-47 |
| Msa1383680 | Msa1403710 | 0.805437 | 1.335761e-49 | -8.615850e-47 |
| Msa1383680 | Msa1416730 | 0.811210 | 7.845676e-51 | -8.615850e-47 |
| Msa1383680 | Msa1430550 | 0.803656 | 3.140809e-49 | -8.615850e-47 |
| Msa0708310 | Msa1383680 | 0.821530 | 3.845240e-53 | -8.615850e-47 |
| Msa0786980 | Msa1383680 | 0.800940 | 1.138622e-48 | -8.615850e-47 |
| Msa0828240 | Msa1383680 | 0.819061 | 1.415303e-52 | -8.615850e-47 |
| Msa0833530 | Msa1383680 | 0.809596 | 1.749949e-50 | -8.615850e-47 |
| Msa0227340 | Msa1383680 | 0.812489 | 4.132022e-51 | -8.615850e-47 |
| Msa0369790 | Msa1383680 | 0.801853 | 7.401099e-49 | -8.615850e-47 |
| Msa0443020 | Msa1383680 | 0.839261 | 1.761545e-57 | -8.615850e-47 |
| Msa0463270 | Msa1383680 | 0.802858 | 4.594810e-49 | -8.615850e-47 |
| Msa0464000 | Msa1383680 | 0.802602 | 5.188831e-49 | -8.615850e-47 |
| Msa0992640 | Msa1383680 | 0.804227 | 2.390049e-49 | -8.615850e-47 |
| Msa0992680 | Msa1383680 | 0.806125 | 9.575359e-50 | -8.615850e-47 |
| Msa0999680 | Msa1383680 | 0.800059 | 1.721320e-48 | -8.615850e-47 |
| Msa1084640 | Msa1383680 | 0.814194 | 1.743947e-51 | -8.615850e-47 |
| Msa0264830 | Msa1383680 | 0.814360 | 1.603038e-51 | -8.615850e-47 |
| Msa0302870 | Msa1383680 | 0.818945 | 1.504121e-52 | -8.615850e-47 |
| Msa0320500 | Msa1383680 | 0.801167 | 1.022899e-48 | -8.615850e-47 |
| Msa0340340 | Msa1383680 | 0.809219 | 2.107825e-50 | -8.615850e-47 |
| Msa0348550 | Msa1383680 | 0.806577 | 7.687520e-50 | -8.615850e-47 |
| Msa1111290 | Msa1383680 | 0.812169 | 4.854574e-51 | -8.615850e-47 |
| Msa1111380 | Msa1383680 | 0.848674 | 5.271872e-60 | -8.615850e-47 |
| Msa0506860 | Msa1383680 | 0.854228 | 1.415737e-61 | -8.615850e-47 |
| Msa0509550 | Msa1383680 | 0.803823 | 2.900810e-49 | -8.615850e-47 |
| Msa0526730 | Msa1383680 | 0.802708 | 4.934710e-49 | -8.615850e-47 |
| Msa0536310 | Msa1383680 | 0.972582 | 5.309113e-135 | -8.615850e-47 |
| Msa0562570 | Msa1383680 | 0.800002 | 1.767586e-48 | -8.615850e-47 |
| Msa0579660 | Msa1383680 | 0.803767 | 2.979301e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383680 | MtrunA17_Chr4g0010181 | 97.241 | 435 | 12 | 0 | 1 | 435 | 1 | 435 | 0.0 | 865 |
| Msa1383680 | MtrunA17_Chr1g0169681 | 76.417 | 441 | 97 | 2 | 1 | 434 | 1 | 441 | 0.0 | 665 |
| Msa1383680 | MtrunA17_Chr3g0078111 | 37.179 | 390 | 196 | 12 | 45 | 407 | 16 | 383 | 9.66e-60 | 200 |
| Msa1383680 | MtrunA17_Chr5g0448191 | 37.179 | 390 | 196 | 12 | 45 | 407 | 16 | 383 | 9.66e-60 | 200 |
| Msa1383680 | MtrunA17_Chr4g0076421 | 34.901 | 404 | 217 | 14 | 45 | 431 | 7 | 381 | 4.71e-52 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383680 | AT2G33150.1 | 77.045 | 440 | 95 | 1 | 1 | 434 | 1 | 440 | 0.0 | 685 |
| Msa1383680 | AT1G04710.1 | 76.443 | 433 | 100 | 1 | 1 | 433 | 1 | 431 | 0.0 | 664 |
| Msa1383680 | AT5G48880.3 | 72.562 | 441 | 114 | 3 | 1 | 434 | 1 | 441 | 0.0 | 664 |
| Msa1383680 | AT5G48880.2 | 72.562 | 441 | 114 | 3 | 1 | 434 | 1 | 441 | 0.0 | 664 |
| Msa1383680 | AT5G48880.4 | 72.562 | 441 | 114 | 3 | 1 | 434 | 1 | 441 | 0.0 | 664 |
| Msa1383680 | AT5G48880.1 | 77.099 | 393 | 88 | 1 | 44 | 434 | 6 | 398 | 0.0 | 639 |
| Msa1383680 | AT5G48230.1 | 39.164 | 383 | 202 | 11 | 43 | 407 | 5 | 374 | 3.81e-66 | 217 |
| Msa1383680 | AT5G48230.2 | 39.108 | 381 | 201 | 11 | 45 | 407 | 12 | 379 | 4.76e-65 | 214 |
| Msa1383680 | AT5G47720.3 | 36.070 | 402 | 230 | 11 | 45 | 431 | 14 | 403 | 3.29e-64 | 212 |
| Msa1383680 | AT5G47720.1 | 36.070 | 402 | 230 | 11 | 45 | 431 | 14 | 403 | 3.29e-64 | 212 |
| Msa1383680 | AT5G47720.4 | 36.070 | 402 | 230 | 11 | 45 | 431 | 14 | 403 | 3.87e-64 | 212 |
| Msa1383680 | AT5G47720.2 | 36.070 | 402 | 230 | 11 | 45 | 431 | 14 | 403 | 3.87e-64 | 212 |
| Msa1383680 | AT5G47720.5 | 36.070 | 402 | 230 | 11 | 45 | 431 | 21 | 410 | 4.67e-64 | 212 |
Find 109 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGATGAAGCAACTGAATT+TGG | 0.179478 | tig0020610:-93552 | None:intergenic |
| TGTTTATTCCTGCAAGAAAT+TGG | 0.182136 | tig0020610:+97731 | Msa1383680:CDS |
| AGAATTTGTGGAAGTTTAAA+TGG | 0.222007 | tig0020610:+98500 | Msa1383680:exon |
| ATCAATAAATTATGTTGTTC+TGG | 0.261714 | tig0020610:+98781 | Msa1383680:three_prime_UTR |
| CCATTGACATTGACCTTTGT+TGG | 0.268053 | tig0020610:-97762 | None:intergenic |
| CAAAAGGGGCTTCCTATTCT+TGG | 0.273850 | tig0020610:+96904 | Msa1383680:CDS |
| TTCCTATTCTTGGAATCTTC+AGG | 0.284215 | tig0020610:+96914 | Msa1383680:CDS |
| AATGGTGGTGCCATGGCTTT+TGG | 0.285762 | tig0020610:+97780 | Msa1383680:CDS |
| AAGACAAATACTAGAAAATA+TGG | 0.292769 | tig0020610:+93485 | Msa1383680:exon |
| ATGACACAAGATAATATTTC+AGG | 0.310830 | tig0020610:+95667 | Msa1383680:CDS |
| TATCCGGCCAAACGCAAATT+TGG | 0.316298 | tig0020610:+96628 | Msa1383680:CDS |
| GTTTATTCCTGCAAGAAATT+GGG | 0.319184 | tig0020610:+97732 | Msa1383680:CDS |
| TCTTATTTGATGAAGGAATT+GGG | 0.337864 | tig0020610:+95629 | Msa1383680:intron |
| CGCGGAAAGGATTGTCGCTT+TGG | 0.355729 | tig0020610:+98289 | Msa1383680:CDS |
| ATCAAGCCCCAATTTCTTGC+AGG | 0.356837 | tig0020610:-97739 | None:intergenic |
| TCTCCATCTGTAGCTTTCCT+AGG | 0.359170 | tig0020610:+98724 | Msa1383680:three_prime_UTR |
| TCAATTGCTCTTTCTGATCC+TGG | 0.360216 | tig0020610:-95136 | None:intergenic |
| GCCGCAGCTGCAACAGCATC+TGG | 0.368332 | tig0020610:+96438 | Msa1383680:CDS |
| GCTGAAGCCTGCATTCAAAA+AGG | 0.374024 | tig0020610:+96664 | Msa1383680:CDS |
| GAACCCACCTTTGTAGAAAC+TGG | 0.377832 | tig0020610:-96483 | None:intergenic |
| TGAAGGAATTGGGGCTGGAT+TGG | 0.386923 | tig0020610:+95639 | Msa1383680:intron |
| AAGTTTGTGGATCCTAAAAC+TGG | 0.399124 | tig0020610:+96569 | Msa1383680:intron |
| AGCTGCTGCAGTATTTGAAC+GGG | 0.401233 | tig0020610:+98467 | Msa1383680:CDS |
| CCGAGACTGTCTTCTTCCTA+TGG | 0.405077 | tig0020610:+96247 | Msa1383680:CDS |
| AGATCTACCAAATTTGCGTT+TGG | 0.408857 | tig0020610:-96635 | None:intergenic |
| GAGAATGTTGCGCAACGTTA+CGG | 0.420397 | tig0020610:+96281 | Msa1383680:CDS |
| TGGTGTAGATCCTGCTGTCA+TGG | 0.432233 | tig0020610:+97517 | Msa1383680:CDS |
| GAGAAGTGTGGCTGTACAAA+AGG | 0.433377 | tig0020610:+96888 | Msa1383680:CDS |
| ACTGAGGCAAGTAGATCATC+TGG | 0.434573 | tig0020610:-94374 | None:intergenic |
| GTTAATAGACAATGTTCATC+TGG | 0.437926 | tig0020610:+95476 | Msa1383680:CDS |
| TCACAAGTATGCTTGATCTC+TGG | 0.439176 | tig0020610:+98546 | Msa1383680:three_prime_UTR |
| CTCCATCTGTAGCTTTCCTA+GGG | 0.439915 | tig0020610:+98725 | Msa1383680:three_prime_UTR |
| TACATTTCAGGTTCTGGTAT+GGG | 0.444350 | tig0020610:+98444 | Msa1383680:intron |
| CTGCTGCACCATCACTAACT+TGG | 0.445534 | tig0020610:-96849 | None:intergenic |
| GCTTTCCTAGGGTTCCTTTG+AGG | 0.453360 | tig0020610:+98736 | Msa1383680:three_prime_UTR |
| ATGTTGTGTTTAATGAGATA+AGG | 0.453470 | tig0020610:-98843 | None:intergenic |
| AAAGCTGGGTTCTATGACAT+TGG | 0.454280 | tig0020610:+95533 | Msa1383680:CDS |
| GGGAGACTTCTGAGAATTTG+TGG | 0.455332 | tig0020610:+98488 | Msa1383680:exon |
| CCAGCAGATTTCACTGCAGC+TGG | 0.456335 | tig0020610:-97563 | None:intergenic |
| TTCTTGATTACCTGCAGTTG+TGG | 0.457288 | tig0020610:-96693 | None:intergenic |
| ACTTTACCTGTGGCGCCTAA+AGG | 0.463429 | tig0020610:-97807 | None:intergenic |
| CTACCAAATTTGCGTTTGGC+CGG | 0.468876 | tig0020610:-96631 | None:intergenic |
| ATACATTTCAGGTTCTGGTA+TGG | 0.474139 | tig0020610:+98443 | Msa1383680:intron |
| GAAGTAGGCGACATAGTTGT+AGG | 0.476917 | tig0020610:+95100 | Msa1383680:CDS |
| TTGAAATAAGTATAAGAGAA+AGG | 0.483589 | tig0020610:+98612 | Msa1383680:three_prime_UTR |
| ACCAGATGCTGTTGCAGCTG+CGG | 0.484759 | tig0020610:-96439 | None:intergenic |
| TTTGATGAAGGAATTGGGGC+TGG | 0.488144 | tig0020610:+95634 | Msa1383680:intron |
| ATGATGAATGATATAGAAAG+TGG | 0.488529 | tig0020610:-93427 | None:intergenic |
| ATTATTGTTTCTGTTGATGA+TGG | 0.492168 | tig0020610:+96605 | Msa1383680:CDS |
| GATCCTGCTGTCATGGGTGT+TGG | 0.497368 | tig0020610:+97524 | Msa1383680:CDS |
| GGACATCCTTTAGGCGCCAC+AGG | 0.500067 | tig0020610:+97801 | Msa1383680:CDS |
| TTTCTGTTGATGATGGTATC+CGG | 0.507922 | tig0020610:+96612 | Msa1383680:CDS |
| GTTGCTGCTTACATAAAAGC+TGG | 0.510537 | tig0020610:+95518 | Msa1383680:CDS |
| CCAACAAAGGTCAATGTCAA+TGG | 0.513905 | tig0020610:+97762 | Msa1383680:CDS |
| CTTATTTGATGAAGGAATTG+GGG | 0.515706 | tig0020610:+95630 | Msa1383680:intron |
| GGTGTAATCTCGATGTGTAT+AGG | 0.516266 | tig0020610:+98310 | Msa1383680:CDS |
| CTATTTGCAAAGCAAAGCGT+GGG | 0.519769 | tig0020610:+94333 | Msa1383680:CDS |
| TTTATTCCTGCAAGAAATTG+GGG | 0.520297 | tig0020610:+97733 | Msa1383680:CDS |
| CATAGGAAGAAGACAGTCTC+GGG | 0.526881 | tig0020610:-96246 | None:intergenic |
| GGTGTAGATCCTGCTGTCAT+GGG | 0.527409 | tig0020610:+97518 | Msa1383680:CDS |
| AGAAGTGTGGCTGTACAAAA+GGG | 0.529709 | tig0020610:+96889 | Msa1383680:CDS |
| ATTTCATGCTTACAGCAGCC+TGG | 0.533043 | tig0020610:-96325 | None:intergenic |
| CGAGACTGTCTTCTTCCTAT+GGG | 0.538873 | tig0020610:+96248 | Msa1383680:CDS |
| GCAGCTGGAATAGCAAAAGC+TGG | 0.539208 | tig0020610:-97548 | None:intergenic |
| CCAGCTGCAGTGAAATCTGC+TGG | 0.541500 | tig0020610:+97563 | Msa1383680:CDS |
| TGTTCTGCTGGACAAACTGG+TGG | 0.541501 | tig0020610:+93694 | Msa1383680:CDS |
| CGAGATGAAGCGCCGCGGAA+AGG | 0.545287 | tig0020610:+98276 | Msa1383680:CDS |
| TGATTTGTATGAAATAAATG+AGG | 0.551392 | tig0020610:+97604 | Msa1383680:CDS |
| TTGCTGCTTACATAAAAGCT+GGG | 0.552144 | tig0020610:+95519 | Msa1383680:CDS |
| TACCTGAAGATTCCAAGAAT+AGG | 0.554484 | tig0020610:-96916 | None:intergenic |
| GAAATTAGGTCGAGTCTCAC+AGG | 0.560910 | tig0020610:+96412 | Msa1383680:intron |
| GGACCAACACCCATGACAGC+AGG | 0.561197 | tig0020610:-97527 | None:intergenic |
| GACAAGGCAGGAGCAAGACC+AGG | 0.566383 | tig0020610:+96307 | Msa1383680:CDS |
| ACAGTCTCGGGCTTGTGCAA+AGG | 0.567166 | tig0020610:-96234 | None:intergenic |
| CCATAGGAAGAAGACAGTCT+CGG | 0.567982 | tig0020610:-96247 | None:intergenic |
| AATGTGGAACCATGTGAAGT+AGG | 0.571979 | tig0020610:+95085 | Msa1383680:CDS |
| AAGGATGGAACCACAACTGC+AGG | 0.572568 | tig0020610:+96683 | Msa1383680:CDS |
| AGTTAGTGATGGTGCAGCAG+CGG | 0.577291 | tig0020610:+96852 | Msa1383680:CDS |
| TAAAGGATGTCCAAAAGCCA+TGG | 0.584140 | tig0020610:-97790 | None:intergenic |
| GAGCTGCTGCAGTATTTGAA+CGG | 0.585911 | tig0020610:+98466 | Msa1383680:CDS |
| CAATGTCAATGGTGGTGCCA+TGG | 0.590035 | tig0020610:+97773 | Msa1383680:CDS |
| CGCAACGTTACGGTGTGACA+AGG | 0.592581 | tig0020610:+96291 | Msa1383680:CDS |
| TTCTCAGAAGTTATTCCCAT+AGG | 0.594952 | tig0020610:-96263 | None:intergenic |
| AATCATTCCAGTTTCTACAA+AGG | 0.595392 | tig0020610:+96476 | Msa1383680:CDS |
| ACGTTACGGTGTGACAAGGC+AGG | 0.596441 | tig0020610:+96295 | Msa1383680:CDS |
| AAGAGCAATTGAGTGCAGAA+TGG | 0.597887 | tig0020610:+95147 | Msa1383680:CDS |
| TCTACTTGCCTCAGTTCTCA+AGG | 0.598314 | tig0020610:+94382 | Msa1383680:CDS |
| AACCCTAGGAAAGCTACAGA+TGG | 0.599977 | tig0020610:-98727 | None:intergenic |
| GCTATTTGCAAAGCAAAGCG+TGG | 0.605886 | tig0020610:+94332 | Msa1383680:CDS |
| AGAAAATTGAGTAAACGCGA+TGG | 0.624476 | tig0020610:-93392 | None:intergenic |
| TTTCAATGTATATGAAAACA+CGG | 0.641484 | tig0020610:-93303 | None:intergenic |
| AATGCTAGCCAAGTTAGTGA+TGG | 0.641945 | tig0020610:+96841 | Msa1383680:CDS |
| ACAAAGGTCAATGTCAATGG+TGG | 0.646397 | tig0020610:+97765 | Msa1383680:CDS |
| CGTGATAGAGAAAACAAATG+TGG | 0.657771 | tig0020610:+95069 | Msa1383680:CDS |
| AATGAGATAAGGAACAATCA+CGG | 0.657909 | tig0020610:-98832 | None:intergenic |
| ACTATGTCGCCTACTTCACA+TGG | 0.663818 | tig0020610:-95094 | None:intergenic |
| TCTTCGCAAAACTAACCCAA+AGG | 0.670195 | tig0020610:+95690 | Msa1383680:CDS |
| TGTCTATTAACAGTTCGAAG+CGG | 0.673883 | tig0020610:-95464 | None:intergenic |
| GAAGTGTGGCTGTACAAAAG+GGG | 0.677244 | tig0020610:+96890 | Msa1383680:CDS |
| ATTGGGGCTTGATCCAACAA+AGG | 0.682113 | tig0020610:+97749 | Msa1383680:CDS |
| CAAAGCGACAATCCTTTCCG+CGG | 0.684658 | tig0020610:-98288 | None:intergenic |
| GCTTCTCATGAAGAGAAGTG+TGG | 0.688912 | tig0020610:+96876 | Msa1383680:CDS |
| ATTTGCAAAGCAAAGCGTGG+GGG | 0.689702 | tig0020610:+94335 | Msa1383680:CDS |
| AAAACTTACAGAGAGATGAG+TGG | 0.693438 | tig0020610:-93580 | None:intergenic |
| TGGTGGATCTGAAAATGATG+TGG | 0.696807 | tig0020610:+93711 | Msa1383680:CDS |
| AGAAGTTACCTTGAGAACTG+AGG | 0.708645 | tig0020610:-94390 | None:intergenic |
| TATTTGCAAAGCAAAGCGTG+GGG | 0.719147 | tig0020610:+94334 | Msa1383680:CDS |
| TTGAACGAGATGAAGCGCCG+CGG | 0.753752 | tig0020610:+98271 | Msa1383680:CDS |
| GCTGCTGCAGTATTTGAACG+GGG | 0.756187 | tig0020610:+98468 | Msa1383680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTATTTTTATAGTTGT+TGG | + | tig0020610:93350-93369 | Msa1383680:five_prime_UTR | 15.0% |
| !!! | TTGTTATTTTTATAGTTGTT+GGG | + | tig0020610:93351-93370 | Msa1383680:five_prime_UTR | 15.0% |
| !!! | TAATTTTTTCAGTTTTGTTA+AGG | + | tig0020610:94251-94270 | Msa1383680:intron | 15.0% |
| !!! | AATTTTTTCAGTTTTGTTAA+GGG | + | tig0020610:94252-94271 | Msa1383680:intron | 15.0% |
| !!! | ACTGTTTATTTTTTTTTATC+TGG | + | tig0020610:94588-94607 | Msa1383680:intron | 15.0% |
| !!! | CTGTTTATTTTTTTTTATCT+GGG | + | tig0020610:94589-94608 | Msa1383680:intron | 15.0% |
| !!! | AACCTTTTCATTATTTTAAT+AGG | + | tig0020610:96205-96224 | Msa1383680:intron | 15.0% |
| !! | AACCTATTAAAATAATGAAA+AGG | - | tig0020610:96210-96229 | None:intergenic | 15.0% |
| !! | AATCTATGAAAAGATTATAA+AGG | + | tig0020610:96369-96388 | Msa1383680:intron | 15.0% |
| !!! | AATTCTTTTAATGTGAAATT+AGG | + | tig0020610:96398-96417 | Msa1383680:intron | 15.0% |
| !!! | TTTTAAAAGAAAATTCATCT+TGG | - | tig0020610:96514-96533 | None:intergenic | 15.0% |
| !! | TAAATACAAACTTATAAAAC+AGG | + | tig0020610:97166-97185 | Msa1383680:intron | 15.0% |
| !! | ATTTGTGTAATATTTACAAT+AGG | - | tig0020610:97227-97246 | None:intergenic | 15.0% |
| !! | TTGTAAATATTACACAAATT+TGG | + | tig0020610:97228-97247 | Msa1383680:intron | 15.0% |
| !!! | TTTACTGTTTTTAAATTTGA+AGG | - | tig0020610:97469-97488 | None:intergenic | 15.0% |
| !! | GAAAGGAAAAATAATAATTA+AGG | + | tig0020610:98629-98648 | Msa1383680:intron | 15.0% |
| !! | TTTCAATGTATATGAAAACA+CGG | - | tig0020610:93306-93325 | None:intergenic | 20.0% |
| !! | AAGACAAATACTAGAAAATA+TGG | + | tig0020610:93485-93504 | Msa1383680:exon | 20.0% |
| !! | AGTTCTTAGATTAATATTGA+AGG | + | tig0020610:93747-93766 | Msa1383680:intron | 20.0% |
| !! | TAGTAATAATTCGAAACAAA+TGG | - | tig0020610:94159-94178 | None:intergenic | 20.0% |
| !!! | AACTTCTGACTTTTAATTTA+CGG | + | tig0020610:94283-94302 | Msa1383680:intron | 20.0% |
| !! | TAAGTTCTATCATAATCTAA+AGG | - | tig0020610:94958-94977 | None:intergenic | 20.0% |
| !! | TTATAATCAATCAGAAAATG+TGG | - | tig0020610:95936-95955 | None:intergenic | 20.0% |
| !! | AAGTTTCAAAGTAAAATATG+TGG | - | tig0020610:96171-96190 | None:intergenic | 20.0% |
| !!! | GATTTTGTTTATAAAGTTTG+TGG | + | tig0020610:96556-96575 | Msa1383680:intron | 20.0% |
| !!! | TTCTTCTTTTGCTAAATTTT+TGG | + | tig0020610:96718-96737 | Msa1383680:intron | 20.0% |
| !! | TCAATATTTATCTAGATACA+TGG | + | tig0020610:97085-97104 | Msa1383680:intron | 20.0% |
| !!! | TGATTTGTATGAAATAAATG+AGG | + | tig0020610:97604-97623 | Msa1383680:CDS | 20.0% |
| !! | AACTAGAGATAATGAAATTT+CGG | - | tig0020610:97922-97941 | None:intergenic | 20.0% |
| !!! | TTCAATTTTTACTTCATTAG+TGG | - | tig0020610:97986-98005 | None:intergenic | 20.0% |
| !! | GTTTAATAAGAAGACATTAA+GGG | - | tig0020610:98063-98082 | None:intergenic | 20.0% |
| !!! | TAATATTTTAGTGTACTCTT+TGG | - | tig0020610:98085-98104 | None:intergenic | 20.0% |
| !! | GTACACTAAAATATTAAGAA+AGG | + | tig0020610:98089-98108 | Msa1383680:intron | 20.0% |
| !! | TTGAAATAAGTATAAGAGAA+AGG | + | tig0020610:98612-98631 | Msa1383680:three_prime_UTR | 20.0% |
| !! | ATCAATAAATTATGTTGTTC+TGG | + | tig0020610:98781-98800 | Msa1383680:three_prime_UTR | 20.0% |
| ! | ATGATGAATGATATAGAAAG+TGG | - | tig0020610:93430-93449 | None:intergenic | 25.0% |
| !! | ATTAATATTGAAGGTGTATC+TGG | + | tig0020610:93756-93775 | Msa1383680:intron | 25.0% |
| ! | TACAACATATTTGTCTATCT+CGG | - | tig0020610:93900-93919 | None:intergenic | 25.0% |
| ! | ATATTGAAGATGTGTTTGTT+TGG | + | tig0020610:94086-94105 | Msa1383680:intron | 25.0% |
| ! | ATTGGTTACTATAAGAAGAT+TGG | + | tig0020610:94642-94661 | Msa1383680:intron | 25.0% |
| ! | GATTAGTGAACATTTATAAC+AGG | + | tig0020610:94704-94723 | Msa1383680:intron | 25.0% |
| ! | ATAACAGGATTTATCAATTG+TGG | + | tig0020610:94719-94738 | Msa1383680:intron | 25.0% |
| ! | TCATGAATAAGAAATCATAG+GGG | - | tig0020610:95036-95055 | None:intergenic | 25.0% |
| ! | CTCATGAATAAGAAATCATA+GGG | - | tig0020610:95037-95056 | None:intergenic | 25.0% |
| !! | TCTTATTTGATGAAGGAATT+GGG | + | tig0020610:95629-95648 | Msa1383680:intron | 25.0% |
| ! | ATGACACAAGATAATATTTC+AGG | + | tig0020610:95667-95686 | Msa1383680:CDS | 25.0% |
| ! | ATTTGAAAAATGCAACTTCA+AGG | - | tig0020610:95718-95737 | None:intergenic | 25.0% |
| ! | AATGTGAATTGAATAGACTT+TGG | + | tig0020610:95778-95797 | Msa1383680:intron | 25.0% |
| ! | AGAAAACTTCATTACAATCT+AGG | - | tig0020610:96112-96131 | None:intergenic | 25.0% |
| ! | GTAAAATATGTGGAATTGAT+AGG | - | tig0020610:96161-96180 | None:intergenic | 25.0% |
| !!! | ATTATTGTTTCTGTTGATGA+TGG | + | tig0020610:96605-96624 | Msa1383680:CDS | 25.0% |
| ! | TGCAGTTAAATATAGTTAGA+GGG | - | tig0020610:96818-96837 | None:intergenic | 25.0% |
| ! | TCTAACTATATTTAACTGCA+GGG | + | tig0020610:96818-96837 | Msa1383680:intron | 25.0% |
| ! | ACTGTTTACTCATATCATTA+TGG | - | tig0020610:96944-96963 | None:intergenic | 25.0% |
| ! | TATCTAATAATGTATTTCCC+AGG | - | tig0020610:97148-97167 | None:intergenic | 25.0% |
| ! | ACTTTATGTTGCTATGATAA+AGG | + | tig0020610:97324-97343 | Msa1383680:intron | 25.0% |
| ! | AAAAATGTTCCTAATTCGAT+AGG | + | tig0020610:97401-97420 | Msa1383680:intron | 25.0% |
| ! | AACAGTAAATTCAATGTTGT+AGG | + | tig0020610:97480-97499 | Msa1383680:intron | 25.0% |
| ! | AATGTGCAATAGAAAGTTAT+TGG | - | tig0020610:97659-97678 | None:intergenic | 25.0% |
| ! | ATGAAATATGTGAAGTAAAC+AGG | - | tig0020610:97847-97866 | None:intergenic | 25.0% |
| !!! | TACAATATTCTTTTTAGCAG+TGG | - | tig0020610:97880-97899 | None:intergenic | 25.0% |
| ! | GGTTTAATAAGAAGACATTA+AGG | - | tig0020610:98064-98083 | None:intergenic | 25.0% |
| !! | ATTAAATCAACTTGTTCAAC+TGG | - | tig0020610:98174-98193 | None:intergenic | 25.0% |
| ! | TACATTCAGGTACTAATAAT+CGG | - | tig0020610:98408-98427 | None:intergenic | 25.0% |
| ! | TTTGTACTGTTATACATTTC+AGG | + | tig0020610:98432-98451 | Msa1383680:intron | 25.0% |
| ! | AGAATTTGTGGAAGTTTAAA+TGG | + | tig0020610:98500-98519 | Msa1383680:exon | 25.0% |
| ! | TTTTTATAGTTGTTGGGACT+TGG | + | tig0020610:93357-93376 | Msa1383680:five_prime_UTR | 30.0% |
| ! | TTTTATAGTTGTTGGGACTT+GGG | + | tig0020610:93358-93377 | Msa1383680:five_prime_UTR | 30.0% |
| TAAGATGAAGCAACTGAATT+TGG | - | tig0020610:93555-93574 | None:intergenic | 30.0% | |
| !!! | TTGTTTTGTTTTTCACTTGC+AGG | + | tig0020610:93663-93682 | Msa1383680:intron | 30.0% |
| TGTGTTAAATGTTATGTGTG+CGG | + | tig0020610:93851-93870 | Msa1383680:intron | 30.0% | |
| GAGATAGACAAATATGTTGT+AGG | + | tig0020610:93899-93918 | Msa1383680:intron | 30.0% | |
| AAATATGTTGTAGGTGTGTA+TGG | + | tig0020610:93908-93927 | Msa1383680:intron | 30.0% | |
| AATTATTACTAGTGTTGTCG+TGG | + | tig0020610:94168-94187 | Msa1383680:intron | 30.0% | |
| !! | CTTCTTGGATTAGTCAAAAT+TGG | + | tig0020610:94408-94427 | Msa1383680:intron | 30.0% |
| AAACGATTGATCATGTAGTT+CGG | - | tig0020610:94554-94573 | None:intergenic | 30.0% | |
| ! | TTATCTGGGTTTGTTTGAAT+CGG | + | tig0020610:94603-94622 | Msa1383680:intron | 30.0% |
| ! | CACTAATCCATTTTCTTACT+CGG | - | tig0020610:94692-94711 | None:intergenic | 30.0% |
| ! | AAATGTAGGATTTGCTTTAG+TGG | + | tig0020610:94843-94862 | Msa1383680:intron | 30.0% |
| !! | AATGTGTCATTTGAGGAAAA+CGG | + | tig0020610:94868-94887 | Msa1383680:intron | 30.0% |
| GCTCATGAATAAGAAATCAT+AGG | - | tig0020610:95038-95057 | None:intergenic | 30.0% | |
| !! | CACATTTGTTTTCTCTATCA+CGG | - | tig0020610:95071-95090 | None:intergenic | 30.0% |
| ACAAGCACATGATATTTCAT+TGG | + | tig0020610:95230-95249 | Msa1383680:intron | 30.0% | |
| ! | ATATATCATGTGCGTGTTTT+TGG | - | tig0020610:95313-95332 | None:intergenic | 30.0% |
| GTTAATAGACAATGTTCATC+TGG | + | tig0020610:95476-95495 | Msa1383680:CDS | 30.0% | |
| GTCATGACCTTGTAATAATT+TGG | + | tig0020610:95592-95611 | Msa1383680:intron | 30.0% | |
| GATTAGGCCAAATTATTACA+AGG | - | tig0020610:95602-95621 | None:intergenic | 30.0% | |
| CAAATAAGAGGAAGAAGATT+AGG | - | tig0020610:95618-95637 | None:intergenic | 30.0% | |
| ! | TTCTTCCTCTTATTTGATGA+AGG | + | tig0020610:95622-95641 | Msa1383680:intron | 30.0% |
| CAATTCCTTCATCAAATAAG+AGG | - | tig0020610:95630-95649 | None:intergenic | 30.0% | |
| ! | CTCTTATTTGATGAAGGAAT+TGG | + | tig0020610:95628-95647 | Msa1383680:intron | 30.0% |
| CTTATTTGATGAAGGAATTG+GGG | + | tig0020610:95630-95649 | Msa1383680:intron | 30.0% | |
| AACTGAAGAGTTTAGTTATC+AGG | - | tig0020610:95742-95761 | None:intergenic | 30.0% | |
| TTCATAAAAACTCCCAATCA+CGG | - | tig0020610:95819-95838 | None:intergenic | 30.0% | |
| CTGAAGAACTTATTGAAATG+AGG | - | tig0020610:95872-95891 | None:intergenic | 30.0% | |
| AATCATTCCAGTTTCTACAA+AGG | + | tig0020610:96476-96495 | Msa1383680:CDS | 30.0% | |
| GCAGTTAAATATAGTTAGAG+GGG | - | tig0020610:96817-96836 | None:intergenic | 30.0% | |
| CTGCAGTTAAATATAGTTAG+AGG | - | tig0020610:96819-96838 | None:intergenic | 30.0% | |
| CTCTAACTATATTTAACTGC+AGG | + | tig0020610:96817-96836 | Msa1383680:intron | 30.0% | |
| ATATGAGTAAACAGTCACTT+TGG | + | tig0020610:96949-96968 | Msa1383680:intron | 30.0% | |
| TTACTAAAAAGACACGTTCA+TGG | - | tig0020610:97042-97061 | None:intergenic | 30.0% | |
| ! | TTATCTAGATACATGGACTA+AGG | + | tig0020610:97092-97111 | Msa1383680:intron | 30.0% |
| !! | ATTTAATTAGCTTGTCCTAC+AGG | - | tig0020610:97257-97276 | None:intergenic | 30.0% |
| ! | TTGCACATTTTCTAAGCATT+TGG | + | tig0020610:97670-97689 | Msa1383680:intron | 30.0% |
| TGTTTATTCCTGCAAGAAAT+TGG | + | tig0020610:97731-97750 | Msa1383680:CDS | 30.0% | |
| GTTTATTCCTGCAAGAAATT+GGG | + | tig0020610:97732-97751 | Msa1383680:CDS | 30.0% | |
| TTTATTCCTGCAAGAAATTG+GGG | + | tig0020610:97733-97752 | Msa1383680:CDS | 30.0% | |
| AAATATCTCAACTTTACCTG+TGG | - | tig0020610:97820-97839 | None:intergenic | 30.0% | |
| !! | ATTCTTTTTAGCAGTGGAAA+TGG | - | tig0020610:97874-97893 | None:intergenic | 30.0% |
| !!! | CAGAGTTTTAGAAAGTAAAC+AGG | + | tig0020610:98006-98025 | Msa1383680:intron | 30.0% |
| ACAGCAAAAGAAATGGAATA+AGG | - | tig0020610:98352-98371 | None:intergenic | 30.0% | |
| !! | ATCGGTTTATTTTTCTCCTT+AGG | - | tig0020610:98390-98409 | None:intergenic | 30.0% |
| TTAGTGTACAAAAACCTCAA+AGG | - | tig0020610:98753-98772 | None:intergenic | 30.0% | |
| AGAAAATTGAGTAAACGCGA+TGG | - | tig0020610:93395-93414 | None:intergenic | 35.0% | |
| AAAACTTACAGAGAGATGAG+TGG | - | tig0020610:93583-93602 | None:intergenic | 35.0% | |
| ACGAAACATTGACATAGACA+TGG | - | tig0020610:94053-94072 | None:intergenic | 35.0% | |
| ATGTCTATGTCAATGTTTCG+TGG | + | tig0020610:94052-94071 | Msa1383680:intron | 35.0% | |
| TTGAAGATGTGTTTGTTTGG+TGG | + | tig0020610:94089-94108 | Msa1383680:intron | 35.0% | |
| CTGAATCTAACTACATGTGT+CGG | - | tig0020610:94131-94150 | None:intergenic | 35.0% | |
| ! | CAGAGCTAGAGTATTAAACA+TGG | + | tig0020610:94448-94467 | Msa1383680:intron | 35.0% |
| ATTACTCACACATCATAGCA+TGG | + | tig0020610:94764-94783 | Msa1383680:intron | 35.0% | |
| TAGATAACTCCTCGAAATGT+AGG | + | tig0020610:94829-94848 | Msa1383680:intron | 35.0% | |
| AAAGCAAATCCTACATTTCG+AGG | - | tig0020610:94841-94860 | None:intergenic | 35.0% | |
| !! | AGTGGTTAATGTGTCATTTG+AGG | + | tig0020610:94861-94880 | Msa1383680:intron | 35.0% |
| CGTGATAGAGAAAACAAATG+TGG | + | tig0020610:95069-95088 | Msa1383680:CDS | 35.0% | |
| ! | ATAGTTGTAGGCACAGTTTT+AGG | + | tig0020610:95112-95131 | Msa1383680:CDS | 35.0% |
| ! | TGAGAGTGTAAAACTAACCT+GGG | - | tig0020610:95192-95211 | None:intergenic | 35.0% |
| ! | TTGAGAGTGTAAAACTAACC+TGG | - | tig0020610:95193-95212 | None:intergenic | 35.0% |
| AACAGTCTCTGCTTGAAAAT+TGG | - | tig0020610:95444-95463 | None:intergenic | 35.0% | |
| TGTCTATTAACAGTTCGAAG+CGG | - | tig0020610:95467-95486 | None:intergenic | 35.0% | |
| ! | TTGCTGCTTACATAAAAGCT+GGG | + | tig0020610:95519-95538 | Msa1383680:CDS | 35.0% |
| GAATAGACTTTGGTTGTGTT+TGG | + | tig0020610:95788-95807 | Msa1383680:intron | 35.0% | |
| TGTTTGGATTAACCGTGATT+GGG | + | tig0020610:95804-95823 | Msa1383680:intron | 35.0% | |
| CAGCGTATGAATAAGAGATA+AGG | + | tig0020610:96016-96035 | Msa1383680:intron | 35.0% | |
| CGTATGAATAAGAGATAAGG+TGG | + | tig0020610:96019-96038 | Msa1383680:intron | 35.0% | |
| ! | GGATTAGTGAGTGTTATCTT+TGG | + | tig0020610:96040-96059 | Msa1383680:intron | 35.0% |
| !! | GTGAGTGTTATCTTTGGTTT+TGG | + | tig0020610:96046-96065 | Msa1383680:intron | 35.0% |
| !!! | TGTTATCTTTGGTTTTGGAG+AGG | + | tig0020610:96051-96070 | Msa1383680:intron | 35.0% |
| !! | TTTTGGAGAGGAATTTTGAG+TGG | + | tig0020610:96063-96082 | Msa1383680:intron | 35.0% |
| !! | TTTGGAGAGGAATTTTGAGT+GGG | + | tig0020610:96064-96083 | Msa1383680:intron | 35.0% |
| TTCTCAGAAGTTATTCCCAT+AGG | - | tig0020610:96266-96285 | None:intergenic | 35.0% | |
| ATTCCAGTTTCTACAAAGGT+GGG | + | tig0020610:96480-96499 | Msa1383680:intron | 35.0% | |
| AAGTTTGTGGATCCTAAAAC+TGG | + | tig0020610:96569-96588 | Msa1383680:intron | 35.0% | |
| ! | TGTTTCTTCTCTCCAGTTTT+AGG | - | tig0020610:96584-96603 | None:intergenic | 35.0% |
| !! | TTTCTGTTGATGATGGTATC+CGG | + | tig0020610:96612-96631 | Msa1383680:CDS | 35.0% |
| AGATCTACCAAATTTGCGTT+TGG | - | tig0020610:96638-96657 | None:intergenic | 35.0% | |
| GGACATATTCACAAGGTATA+AGG | - | tig0020610:96796-96815 | None:intergenic | 35.0% | |
| TTCCTATTCTTGGAATCTTC+AGG | + | tig0020610:96914-96933 | Msa1383680:CDS | 35.0% | |
| TACCTGAAGATTCCAAGAAT+AGG | - | tig0020610:96919-96938 | None:intergenic | 35.0% | |
| ! | GGACTAAGGTATCTAATACA+TGG | + | tig0020610:97106-97125 | Msa1383680:intron | 35.0% |
| ! | GGTATCTAATACATGGACTA+AGG | + | tig0020610:97113-97132 | Msa1383680:intron | 35.0% |
| GACTAAGGAATTAGATACCT+GGG | + | tig0020610:97128-97147 | Msa1383680:intron | 35.0% | |
| TAAAACAGGCATCTAGATGT+AGG | + | tig0020610:97180-97199 | Msa1383680:intron | 35.0% | |
| AAAACAGGCATCTAGATGTA+GGG | + | tig0020610:97181-97200 | Msa1383680:intron | 35.0% | |
| CTAATTCGATAGGAAAAGCT+CGG | + | tig0020610:97411-97430 | Msa1383680:intron | 35.0% | |
| ! | CTAAGCATTTGGCAATTTTG+TGG | + | tig0020610:97681-97700 | Msa1383680:intron | 35.0% |
| GAGTTTCTGATGCTTACTAT+CGG | + | tig0020610:98197-98216 | Msa1383680:intron | 35.0% | |
| CAGTACAAACTCTTACATTC+AGG | - | tig0020610:98421-98440 | None:intergenic | 35.0% | |
| !! | CTGTTATACATTTCAGGTTC+TGG | + | tig0020610:98438-98457 | Msa1383680:intron | 35.0% |
| !! | ATACATTTCAGGTTCTGGTA+TGG | + | tig0020610:98443-98462 | Msa1383680:intron | 35.0% |
| !! | TACATTTCAGGTTCTGGTAT+GGG | + | tig0020610:98444-98463 | Msa1383680:intron | 35.0% |
| ! | TTTTGTTCTGCTGGACAAAC+TGG | + | tig0020610:93691-93710 | Msa1383680:CDS | 40.0% |
| ! | TGGTGGATCTGAAAATGATG+TGG | + | tig0020610:93711-93730 | Msa1383680:CDS | 40.0% |
| GTATGGTGTTTGACATGTGT+AGG | + | tig0020610:93925-93944 | Msa1383680:intron | 40.0% | |
| CTATGTCAATGTTTCGTGGA+TGG | + | tig0020610:94056-94075 | Msa1383680:intron | 40.0% | |
| !! | TGTTTGGTGGTGTCATTAAC+AGG | + | tig0020610:94102-94121 | Msa1383680:intron | 40.0% |
| CTATTTGCAAAGCAAAGCGT+GGG | + | tig0020610:94333-94352 | Msa1383680:CDS | 40.0% | |
| TATTTGCAAAGCAAAGCGTG+GGG | + | tig0020610:94334-94353 | Msa1383680:CDS | 40.0% | |
| AGAAGTTACCTTGAGAACTG+AGG | - | tig0020610:94393-94412 | None:intergenic | 40.0% | |
| CAGTTCTCAAGGTAACTTCT+TGG | + | tig0020610:94393-94412 | Msa1383680:intron | 40.0% | |
| TAACAGTCACTCTGTTGTCA+AGG | + | tig0020610:94513-94532 | Msa1383680:intron | 40.0% | |
| !! | GGATTTGCTGCTCTAACAAT+TGG | + | tig0020610:94624-94643 | Msa1383680:intron | 40.0% |
| ! | CCATTTTCTTACTCGGTAGT+TGG | - | tig0020610:94685-94704 | None:intergenic | 40.0% |
| CCAACTACCGAGTAAGAAAA+TGG | + | tig0020610:94682-94701 | Msa1383680:intron | 40.0% | |
| CAGGATTTATCAATTGTGGC+TGG | + | tig0020610:94723-94742 | Msa1383680:intron | 40.0% | |
| GAGGAAAACGGTTGTATGTT+TGG | + | tig0020610:94880-94899 | Msa1383680:intron | 40.0% | |
| CTTATTCATGAGCTCTCTGT+AGG | + | tig0020610:95045-95064 | Msa1383680:intron | 40.0% | |
| AATGTGGAACCATGTGAAGT+AGG | + | tig0020610:95085-95104 | Msa1383680:CDS | 40.0% | |
| TCAATTGCTCTTTCTGATCC+TGG | - | tig0020610:95139-95158 | None:intergenic | 40.0% | |
| AAGAGCAATTGAGTGCAGAA+TGG | + | tig0020610:95147-95166 | Msa1383680:CDS | 40.0% | |
| ! | AGAATGGCTGCATTTTATGC+TGG | + | tig0020610:95163-95182 | Msa1383680:CDS | 40.0% |
| AGTCTTGCTGACACTATCTA+CGG | + | tig0020610:95259-95278 | Msa1383680:intron | 40.0% | |
| ! | GTTGCTGCTTACATAAAAGC+TGG | + | tig0020610:95518-95537 | Msa1383680:CDS | 40.0% |
| AAAGCTGGGTTCTATGACAT+TGG | + | tig0020610:95533-95552 | Msa1383680:CDS | 40.0% | |
| TCTTCGCAAAACTAACCCAA+AGG | + | tig0020610:95690-95709 | Msa1383680:CDS | 40.0% | |
| ! | TGCAACTTCAAGGTACCTTT+GGG | - | tig0020610:95708-95727 | None:intergenic | 40.0% |
| ! | ATGCAACTTCAAGGTACCTT+TGG | - | tig0020610:95709-95728 | None:intergenic | 40.0% |
| GTGTTTGGATTAACCGTGAT+TGG | + | tig0020610:95803-95822 | Msa1383680:intron | 40.0% | |
| !! | ATTTTGAGTGGGAGAGAACT+AGG | + | tig0020610:96075-96094 | Msa1383680:intron | 40.0% |
| CATTCCAGTTTCTACAAAGG+TGG | + | tig0020610:96479-96498 | Msa1383680:intron | 40.0% | |
| AAGCCTGCATTCAAAAAGGA+TGG | + | tig0020610:96668-96687 | Msa1383680:CDS | 40.0% | |
| ! | GTTCCATCCTTTTTGAATGC+AGG | - | tig0020610:96674-96693 | None:intergenic | 40.0% |
| TTCTTGATTACCTGCAGTTG+TGG | - | tig0020610:96696-96715 | None:intergenic | 40.0% | |
| ACAACTGCAGGTAATCAAGA+AGG | + | tig0020610:96695-96714 | Msa1383680:intron | 40.0% | |
| TAAACAGAGCACAAGGAACT+TGG | - | tig0020610:96746-96765 | None:intergenic | 40.0% | |
| ACGAAGTTAAACAGAGCACA+AGG | - | tig0020610:96753-96772 | None:intergenic | 40.0% | |
| AAGGAATGCAGGCTACATAT+GGG | - | tig0020610:96777-96796 | None:intergenic | 40.0% | |
| TAAGGAATGCAGGCTACATA+TGG | - | tig0020610:96778-96797 | None:intergenic | 40.0% | |
| TCACAAGGTATAAGGAATGC+AGG | - | tig0020610:96788-96807 | None:intergenic | 40.0% | |
| TTAGAGGGGACATATTCACA+AGG | - | tig0020610:96803-96822 | None:intergenic | 40.0% | |
| AATGCTAGCCAAGTTAGTGA+TGG | + | tig0020610:96841-96860 | Msa1383680:CDS | 40.0% | |
| ! | AGAAGTGTGGCTGTACAAAA+GGG | + | tig0020610:96889-96908 | Msa1383680:CDS | 40.0% |
| GGACTAAGGAATTAGATACC+TGG | + | tig0020610:97127-97146 | Msa1383680:intron | 40.0% | |
| ACACAAATTTGGCATCCTGT+AGG | + | tig0020610:97239-97258 | Msa1383680:intron | 40.0% | |
| ! | CGAGCTTTTCCTATCGAATT+AGG | - | tig0020610:97413-97432 | None:intergenic | 40.0% |
| !! | GCAATTTTGTGGTCTTGAGT+AGG | + | tig0020610:97692-97711 | Msa1383680:intron | 40.0% |
| CCATTGACATTGACCTTTGT+TGG | - | tig0020610:97765-97784 | None:intergenic | 40.0% | |
| CCAACAAAGGTCAATGTCAA+TGG | + | tig0020610:97762-97781 | Msa1383680:CDS | 40.0% | |
| ACAAAGGTCAATGTCAATGG+TGG | + | tig0020610:97765-97784 | Msa1383680:CDS | 40.0% | |
| TAAAGGATGTCCAAAAGCCA+TGG | - | tig0020610:97793-97812 | None:intergenic | 40.0% | |
| ! | ATGGCTTTTGGACATCCTTT+AGG | + | tig0020610:97792-97811 | Msa1383680:CDS | 40.0% |
| TACTTCATTAGTGGCTCGAA+TGG | - | tig0020610:97977-97996 | None:intergenic | 40.0% | |
| CAAACACTATGCATGCTTCT+AGG | - | tig0020610:98117-98136 | None:intergenic | 40.0% | |
| GGTGTAATCTCGATGTGTAT+AGG | + | tig0020610:98310-98329 | Msa1383680:CDS | 40.0% | |
| GTCTGCTACAGCAAAAGAAA+TGG | - | tig0020610:98359-98378 | None:intergenic | 40.0% | |
| TAGCAGACTATGTATGCCTA+AGG | + | tig0020610:98371-98390 | Msa1383680:intron | 40.0% | |
| TCACAAGTATGCTTGATCTC+TGG | + | tig0020610:98546-98565 | Msa1383680:three_prime_UTR | 40.0% | |
| AAAAACCTCAAAGGAACCCT+AGG | - | tig0020610:98744-98763 | None:intergenic | 40.0% | |
| ! | CAGGCTTCATTTTGTTCTGC+TGG | + | tig0020610:93682-93701 | Msa1383680:intron | 45.0% |
| TTGAACCTAACAACGTGCGT+TGG | - | tig0020610:93967-93986 | None:intergenic | 45.0% | |
| CACCAGACAAGACACAAACA+CGG | - | tig0020610:94029-94048 | None:intergenic | 45.0% | |
| GCTATTTGCAAAGCAAAGCG+TGG | + | tig0020610:94332-94351 | Msa1383680:CDS | 45.0% | |
| ATTTGCAAAGCAAAGCGTGG+GGG | + | tig0020610:94335-94354 | Msa1383680:CDS | 45.0% | |
| ACTGAGGCAAGTAGATCATC+TGG | - | tig0020610:94377-94396 | None:intergenic | 45.0% | |
| TCTACTTGCCTCAGTTCTCA+AGG | + | tig0020610:94382-94401 | Msa1383680:CDS | 45.0% | |
| TCACTCTGTTGTCAAGGCAT+AGG | + | tig0020610:94519-94538 | Msa1383680:intron | 45.0% | |
| GTACAGTTGAGAAGCTGCTA+AGG | + | tig0020610:94904-94923 | Msa1383680:intron | 45.0% | |
| ACTATGTCGCCTACTTCACA+TGG | - | tig0020610:95097-95116 | None:intergenic | 45.0% | |
| GAAGTAGGCGACATAGTTGT+AGG | + | tig0020610:95100-95119 | Msa1383680:CDS | 45.0% | |
| !!! | GCATTTTATGCTGGTTTCCC+AGG | + | tig0020610:95172-95191 | Msa1383680:CDS | 45.0% |
| TTTGATGAAGGAATTGGGGC+TGG | + | tig0020610:95634-95653 | Msa1383680:intron | 45.0% | |
| CATAGGAAGAAGACAGTCTC+GGG | - | tig0020610:96249-96268 | None:intergenic | 45.0% | |
| CCATAGGAAGAAGACAGTCT+CGG | - | tig0020610:96250-96269 | None:intergenic | 45.0% | |
| CGAGACTGTCTTCTTCCTAT+GGG | + | tig0020610:96248-96267 | Msa1383680:CDS | 45.0% | |
| GAGAATGTTGCGCAACGTTA+CGG | + | tig0020610:96281-96300 | Msa1383680:CDS | 45.0% | |
| ATTTCATGCTTACAGCAGCC+TGG | - | tig0020610:96328-96347 | None:intergenic | 45.0% | |
| GAAATTAGGTCGAGTCTCAC+AGG | + | tig0020610:96412-96431 | Msa1383680:intron | 45.0% | |
| GAACCCACCTTTGTAGAAAC+TGG | - | tig0020610:96486-96505 | None:intergenic | 45.0% | |
| TATCCGGCCAAACGCAAATT+TGG | + | tig0020610:96628-96647 | Msa1383680:CDS | 45.0% | |
| CTACCAAATTTGCGTTTGGC+CGG | - | tig0020610:96634-96653 | None:intergenic | 45.0% | |
| GCTGAAGCCTGCATTCAAAA+AGG | + | tig0020610:96664-96683 | Msa1383680:CDS | 45.0% | |
| GCTTCTCATGAAGAGAAGTG+TGG | + | tig0020610:96876-96895 | Msa1383680:CDS | 45.0% | |
| ! | GAGAAGTGTGGCTGTACAAA+AGG | + | tig0020610:96888-96907 | Msa1383680:CDS | 45.0% |
| GAAGTGTGGCTGTACAAAAG+GGG | + | tig0020610:96890-96909 | Msa1383680:CDS | 45.0% | |
| CAAAAGGGGCTTCCTATTCT+TGG | + | tig0020610:96904-96923 | Msa1383680:CDS | 45.0% | |
| GCATCTAGATGTAGGGACTA+GGG | + | tig0020610:97188-97207 | Msa1383680:intron | 45.0% | |
| ! | TGTAGGAGTTTTGCTGCTGT+TGG | + | tig0020610:97497-97516 | Msa1383680:intron | 45.0% |
| ATCAAGCCCCAATTTCTTGC+AGG | - | tig0020610:97742-97761 | None:intergenic | 45.0% | |
| ATTGGGGCTTGATCCAACAA+AGG | + | tig0020610:97749-97768 | Msa1383680:CDS | 45.0% | |
| TTAGTGGCTCGAATGGCATT+TGG | - | tig0020610:97970-97989 | None:intergenic | 45.0% | |
| GAGCTGCTGCAGTATTTGAA+CGG | + | tig0020610:98466-98485 | Msa1383680:CDS | 45.0% | |
| AGCTGCTGCAGTATTTGAAC+GGG | + | tig0020610:98467-98486 | Msa1383680:CDS | 45.0% | |
| ! | GGGAGACTTCTGAGAATTTG+TGG | + | tig0020610:98488-98507 | Msa1383680:exon | 45.0% |
| TCTCCATCTGTAGCTTTCCT+AGG | + | tig0020610:98724-98743 | Msa1383680:three_prime_UTR | 45.0% | |
| CTCCATCTGTAGCTTTCCTA+GGG | + | tig0020610:98725-98744 | Msa1383680:three_prime_UTR | 45.0% | |
| AACCCTAGGAAAGCTACAGA+TGG | - | tig0020610:98730-98749 | None:intergenic | 45.0% | |
| !! | TAATATTATTAATTATATAC+AGG | + | tig0020610:97286-97305 | Msa1383680:intron | 5.0% |
| TGTTCTGCTGGACAAACTGG+TGG | + | tig0020610:93694-93713 | Msa1383680:CDS | 50.0% | |
| GTCCGTGTTTGTGTCTTGTC+TGG | + | tig0020610:94024-94043 | Msa1383680:intron | 50.0% | |
| TCTTACTCGGTAGTTGGCAG+TGG | - | tig0020610:94679-94698 | None:intergenic | 50.0% | |
| !!! | GTAGGCACAGTTTTAGGACC+AGG | + | tig0020610:95118-95137 | Msa1383680:CDS | 50.0% |
| TGAAGGAATTGGGGCTGGAT+TGG | + | tig0020610:95639-95658 | Msa1383680:intron | 50.0% | |
| CCGAGACTGTCTTCTTCCTA+TGG | + | tig0020610:96247-96266 | Msa1383680:CDS | 50.0% | |
| AAGGATGGAACCACAACTGC+AGG | + | tig0020610:96683-96702 | Msa1383680:CDS | 50.0% | |
| CTGCTGCACCATCACTAACT+TGG | - | tig0020610:96852-96871 | None:intergenic | 50.0% | |
| ! | AGTTAGTGATGGTGCAGCAG+CGG | + | tig0020610:96852-96871 | Msa1383680:CDS | 50.0% |
| GGCATCTAGATGTAGGGACT+AGG | + | tig0020610:97187-97206 | Msa1383680:intron | 50.0% | |
| TGGTGTAGATCCTGCTGTCA+TGG | + | tig0020610:97517-97536 | Msa1383680:CDS | 50.0% | |
| GGTGTAGATCCTGCTGTCAT+GGG | + | tig0020610:97518-97537 | Msa1383680:CDS | 50.0% | |
| GCAGCTGGAATAGCAAAAGC+TGG | - | tig0020610:97551-97570 | None:intergenic | 50.0% | |
| ! | CAATGTCAATGGTGGTGCCA+TGG | + | tig0020610:97773-97792 | Msa1383680:CDS | 50.0% |
| !!! | AATGGTGGTGCCATGGCTTT+TGG | + | tig0020610:97780-97799 | Msa1383680:CDS | 50.0% |
| ACTTTACCTGTGGCGCCTAA+AGG | - | tig0020610:97810-97829 | None:intergenic | 50.0% | |
| CAAAGCGACAATCCTTTCCG+CGG | - | tig0020610:98291-98310 | None:intergenic | 50.0% | |
| GCTGCTGCAGTATTTGAACG+GGG | + | tig0020610:98468-98487 | Msa1383680:CDS | 50.0% | |
| GCTTTCCTAGGGTTCCTTTG+AGG | + | tig0020610:98736-98755 | Msa1383680:three_prime_UTR | 50.0% | |
| CGACACCAACGCACGTTGTT+AGG | + | tig0020610:93959-93978 | Msa1383680:intron | 55.0% | |
| AGCAAAGCGTGGGGGATTCA+AGG | + | tig0020610:94343-94362 | Msa1383680:CDS | 55.0% | |
| ACAGTCTCGGGCTTGTGCAA+AGG | - | tig0020610:96237-96256 | None:intergenic | 55.0% | |
| CGCAACGTTACGGTGTGACA+AGG | + | tig0020610:96291-96310 | Msa1383680:CDS | 55.0% | |
| ACGTTACGGTGTGACAAGGC+AGG | + | tig0020610:96295-96314 | Msa1383680:CDS | 55.0% | |
| ACCAGATGCTGTTGCAGCTG+CGG | - | tig0020610:96442-96461 | None:intergenic | 55.0% | |
| GATCCTGCTGTCATGGGTGT+TGG | + | tig0020610:97524-97543 | Msa1383680:CDS | 55.0% | |
| CCAGCAGATTTCACTGCAGC+TGG | - | tig0020610:97566-97585 | None:intergenic | 55.0% | |
| CCAGCTGCAGTGAAATCTGC+TGG | + | tig0020610:97563-97582 | Msa1383680:CDS | 55.0% | |
| ! | TGCCTGCTGCATTTTGCGTC+AGG | + | tig0020610:98226-98245 | Msa1383680:intron | 55.0% |
| CACCTGACGCAAAATGCAGC+AGG | - | tig0020610:98231-98250 | None:intergenic | 55.0% | |
| ! | CGCGGAAAGGATTGTCGCTT+TGG | + | tig0020610:98289-98308 | Msa1383680:CDS | 55.0% |
| !! | CGTGCGTTGGTGTCGTGTCA+GGG | - | tig0020610:93954-93973 | None:intergenic | 60.0% |
| !! | ACGTGCGTTGGTGTCGTGTC+AGG | - | tig0020610:93955-93974 | None:intergenic | 60.0% |
| GACAAGGCAGGAGCAAGACC+AGG | + | tig0020610:96307-96326 | Msa1383680:CDS | 60.0% | |
| GGACCAACACCCATGACAGC+AGG | - | tig0020610:97530-97549 | None:intergenic | 60.0% | |
| GGACATCCTTTAGGCGCCAC+AGG | + | tig0020610:97801-97820 | Msa1383680:CDS | 60.0% | |
| GCCGCAGCTGCAACAGCATC+TGG | + | tig0020610:96438-96457 | Msa1383680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020610 | gene | 93288 | 98850 | 93288 | ID=Msa1383680;Name=Msa1383680 |
| tig0020610 | mRNA | 93288 | 98850 | 93288 | ID=Msa1383680-mRNA-1;Parent=Msa1383680;Name=Msa1383680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=216|1|1|1|0.92|0.86|15|330|435 |
| tig0020610 | exon | 93288 | 93593 | 93288 | ID=Msa1383680-mRNA-1:exon:8643;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 93685 | 93743 | 93685 | ID=Msa1383680-mRNA-1:exon:8644;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 94319 | 94403 | 94319 | ID=Msa1383680-mRNA-1:exon:8645;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 95067 | 95193 | 95067 | ID=Msa1383680-mRNA-1:exon:8646;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 95456 | 95554 | 95456 | ID=Msa1383680-mRNA-1:exon:8647;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 95644 | 95711 | 95644 | ID=Msa1383680-mRNA-1:exon:8648;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 96227 | 96334 | 96227 | ID=Msa1383680-mRNA-1:exon:8649;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 96420 | 96497 | 96420 | ID=Msa1383680-mRNA-1:exon:8650;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 96572 | 96704 | 96572 | ID=Msa1383680-mRNA-1:exon:8651;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 96839 | 96935 | 96839 | ID=Msa1383680-mRNA-1:exon:8652;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 97502 | 97625 | 97502 | ID=Msa1383680-mRNA-1:exon:8653;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 97714 | 97822 | 97714 | ID=Msa1383680-mRNA-1:exon:8654;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 98248 | 98331 | 98248 | ID=Msa1383680-mRNA-1:exon:8655;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 98454 | 98641 | 98454 | ID=Msa1383680-mRNA-1:exon:8656;Parent=Msa1383680-mRNA-1 |
| tig0020610 | exon | 98662 | 98850 | 98662 | ID=Msa1383680-mRNA-1:exon:8657;Parent=Msa1383680-mRNA-1 |
| tig0020610 | five_prime_UTR | 93288 | 93503 | 93288 | ID=Msa1383680-mRNA-1:five_prime_utr;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 93504 | 93593 | 93504 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 93685 | 93743 | 93685 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 94319 | 94403 | 94319 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 95067 | 95193 | 95067 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 95456 | 95554 | 95456 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 95644 | 95711 | 95644 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 96227 | 96334 | 96227 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 96420 | 96497 | 96420 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 96572 | 96704 | 96572 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 96839 | 96935 | 96839 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 97502 | 97625 | 97502 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 97714 | 97822 | 97714 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 98248 | 98331 | 98248 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | CDS | 98454 | 98500 | 98454 | ID=Msa1383680-mRNA-1:cds;Parent=Msa1383680-mRNA-1 |
| tig0020610 | three_prime_UTR | 98501 | 98641 | 98501 | ID=Msa1383680-mRNA-1:three_prime_utr;Parent=Msa1383680-mRNA-1 |
| tig0020610 | three_prime_UTR | 98662 | 98850 | 98662 | ID=Msa1383680-mRNA-1:three_prime_utr;Parent=Msa1383680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
