AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0302870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302870 MtrunA17_Chr2g0329111 97.531 486 9 1 1 483 1 486 0.0 971
Msa0302870 MtrunA17_Chr5g0440421 46.830 489 237 7 3 473 7 490 2.14e-150 438
Msa0302870 MtrunA17_Chr8g0366391 33.198 491 285 13 7 475 10 479 2.38e-81 260
Msa0302870 MtrunA17_Chr7g0265151 30.522 498 282 13 2 465 5 472 1.18e-71 235
Msa0302870 MtrunA17_Chr4g0066151 32.165 485 278 16 6 469 18 472 1.69e-71 234
Msa0302870 MtrunA17_Chr4g0044511 32.906 468 278 16 7 456 41 490 1.94e-71 235
Msa0302870 MtrunA17_Chr4g0066131 31.064 470 283 11 6 456 13 460 2.85e-69 229
Msa0302870 MtrunA17_Chr7g0265141 34.375 480 273 13 4 456 7 471 2.96e-69 229
Msa0302870 MtrunA17_Chr5g0419761 33.814 485 273 17 8 465 11 474 1.93e-67 224
Msa0302870 MtrunA17_Chr4g0044501 31.161 491 293 14 7 477 11 476 3.07e-66 221
Msa0302870 MtrunA17_Chr5g0419771 32.577 485 269 14 7 456 37 498 3.33e-66 221
Msa0302870 MtrunA17_Chr1g0179901 31.276 486 275 16 7 456 17 479 6.98e-66 220
Msa0302870 MtrunA17_Chr8g0361411 32.245 490 265 17 2 470 4 447 1.49e-65 218
Msa0302870 MtrunA17_Chr4g0044481 34.685 444 214 15 7 420 28 425 3.22e-65 216
Msa0302870 MtrunA17_Chr7g0275681 32.068 474 276 15 8 456 14 466 9.98e-65 217
Msa0302870 MtrunA17_Chr4g0066261 31.078 473 282 15 9 456 14 467 2.70e-64 216
Msa0302870 MtrunA17_Chr7g0265051 31.225 506 297 16 4 481 7 489 5.07e-62 210
Msa0302870 MtrunA17_Chr7g0265111 30.495 505 299 17 8 483 41 522 9.59e-62 210
Msa0302870 MtrunA17_Chr5g0401851 30.818 477 283 13 8 456 12 469 2.09e-61 208
Msa0302870 MtrunA17_Chr7g0243871 30.567 494 292 16 2 473 5 469 4.15e-61 207
Msa0302870 MtrunA17_Chr7g0265041 30.470 489 273 14 8 456 13 474 4.88e-61 207
Msa0302870 MtrunA17_Chr4g0066201 31.513 476 278 14 1 456 13 460 9.86e-61 206
Msa0302870 MtrunA17_Chr2g0294921 31.933 476 272 14 7 467 161 599 2.26e-60 209
Msa0302870 MtrunA17_Chr7g0232391 32.790 491 285 17 1 474 1 463 6.12e-60 204
Msa0302870 MtrunA17_Chr4g0066171 29.684 475 287 12 1 456 16 462 6.95e-60 204
Msa0302870 MtrunA17_Chr8g0374931 31.897 464 270 13 9 458 14 445 1.12e-59 204
Msa0302870 MtrunA17_Chr4g0066281 30.342 468 276 14 9 456 15 452 2.12e-59 202
Msa0302870 MtrunA17_Chr7g0265101 29.842 506 306 16 4 481 7 491 2.03e-57 198
Msa0302870 MtrunA17_Chr4g0014061 30.608 477 276 16 7 456 10 458 3.57e-57 197
Msa0302870 MtrunA17_Chr4g0044521 31.130 469 278 14 7 456 10 452 4.12e-57 196
Msa0302870 MtrunA17_Chr5g0416741 30.962 478 283 15 2 454 9 464 8.08e-57 196
Msa0302870 MtrunA17_Chr8g0355221 29.960 494 291 16 8 473 17 483 3.79e-56 194
Msa0302870 MtrunA17_Chr5g0420801 33.117 462 279 16 4 456 5 445 5.71e-56 193
Msa0302870 MtrunA17_Chr6g0463891 30.041 486 289 14 7 468 13 471 9.15e-56 193
Msa0302870 MtrunA17_Chr4g0011051 28.988 514 307 15 4 482 7 497 1.41e-55 193
Msa0302870 MtrunA17_Chr8g0369341 32.653 490 281 18 4 473 5 465 2.44e-55 192
Msa0302870 MtrunA17_Chr2g0294931 29.832 476 288 13 7 456 12 467 3.11e-55 192
Msa0302870 MtrunA17_Chr7g0243771 29.485 485 293 14 1 458 1 463 3.28e-55 192
Msa0302870 MtrunA17_Chr8g0374971 29.310 464 284 11 7 458 13 444 3.79e-55 191
Msa0302870 MtrunA17_Chr8g0374901 28.662 471 292 14 9 456 15 464 3.91e-55 191
Msa0302870 MtrunA17_Chr4g0066221 29.873 472 288 14 9 456 14 466 5.22e-55 191
Msa0302870 MtrunA17_Chr3g0079731 28.486 502 297 17 1 469 1 473 1.93e-54 189
Msa0302870 MtrunA17_Chr8g0374941 29.087 471 296 12 9 458 14 467 8.40e-54 195
Msa0302870 MtrunA17_Chr8g0374941 28.936 470 294 11 9 456 952 1403 2.73e-53 193
Msa0302870 MtrunA17_Chr8g0374941 29.870 462 280 12 9 458 479 908 5.24e-52 190
Msa0302870 MtrunA17_Chr7g0243801 29.132 484 294 14 2 458 3 464 1.30e-53 187
Msa0302870 MtrunA17_Chr6g0486251 29.363 487 281 19 1 460 1 451 5.67e-53 185
Msa0302870 MtrunA17_Chr6g0486201 29.363 487 281 19 1 460 1 451 5.67e-53 185
Msa0302870 MtrunA17_Chr4g0060511 29.461 482 288 15 7 456 12 473 7.18e-53 186
Msa0302870 MtrunA17_Chr2g0294941 32.895 380 211 10 119 484 17 366 8.05e-53 182
Msa0302870 MtrunA17_Chr5g0442561 31.048 496 266 23 3 460 2 459 8.51e-53 185
Msa0302870 MtrunA17_Chr5g0410941 28.903 474 291 13 7 456 24 475 2.17e-52 184
Msa0302870 MtrunA17_Chr2g0307961 30.655 473 271 16 8 456 15 454 3.13e-52 183
Msa0302870 MtrunA17_Chr7g0243931 28.423 482 300 15 4 458 15 478 4.25e-52 184
Msa0302870 MtrunA17_Chr7g0232411 30.478 502 282 19 1 474 1 463 4.27e-52 183
Msa0302870 MtrunA17_Chr5g0426431 31.224 490 286 17 7 473 13 474 4.92e-52 183
Msa0302870 MtrunA17_Chr6g0459311 29.339 484 285 16 1 460 8 458 6.38e-52 182
Msa0302870 MtrunA17_Chr6g0463861 27.719 469 289 12 9 467 14 442 6.42e-52 182
Msa0302870 MtrunA17_Chr7g0275511 30.675 489 280 18 7 469 16 471 6.49e-52 182
Msa0302870 MtrunA17_Chr6g0462571 29.691 485 270 17 4 456 2 447 8.95e-52 182
Msa0302870 MtrunA17_Chr7g0243781 27.386 482 305 12 2 461 5 463 1.25e-51 182
Msa0302870 MtrunA17_Chr7g0243681 28.512 477 295 15 7 458 12 467 1.82e-51 182
Msa0302870 MtrunA17_Chr7g0232341 30.143 491 295 15 1 472 1 462 2.65e-51 181
Msa0302870 MtrunA17_Chr8g0350881 28.238 471 300 10 7 456 13 466 2.99e-51 181
Msa0302870 MtrunA17_Chr6g0462531 29.234 496 287 21 4 472 2 460 3.51e-51 180
Msa0302870 MtrunA17_Chr8g0335161 29.577 497 269 20 1 460 1 453 9.44e-51 179
Msa0302870 MtrunA17_Chr6g0463851 31.092 476 279 16 9 456 14 468 9.93e-51 180
Msa0302870 MtrunA17_Chr8g0334861 31.034 435 250 16 57 474 60 461 2.90e-50 178
Msa0302870 MtrunA17_Chr7g0243951 28.125 480 299 15 4 456 9 469 3.28e-50 178
Msa0302870 MtrunA17_Chr8g0361371 28.235 510 281 19 3 473 4 467 5.80e-50 177
Msa0302870 MtrunA17_Chr5g0429681 30.591 474 284 18 1 456 39 485 1.00e-49 177
Msa0302870 MtrunA17_Chr8g0335141 29.735 491 275 18 1 460 4 455 1.38e-49 176
Msa0302870 MtrunA17_Chr7g0243631 27.386 482 299 14 7 458 14 474 1.81e-49 176
Msa0302870 MtrunA17_Chr7g0235051 28.423 482 259 15 7 456 12 439 2.47e-49 175
Msa0302870 MtrunA17_Chr5g0428081 28.330 473 293 13 9 456 14 465 7.58e-49 174
Msa0302870 MtrunA17_Chr8g0336731 29.979 467 283 15 8 455 34 475 1.07e-48 174
Msa0302870 MtrunA17_Chr3g0092641 29.878 492 290 18 7 473 13 474 1.42e-48 174
Msa0302870 MtrunA17_Chr7g0232331 30.335 478 288 16 1 457 1 454 2.89e-48 172
Msa0302870 MtrunA17_Chr7g0218311 29.474 475 288 15 7 456 17 469 3.18e-48 173
Msa0302870 MtrunA17_Chr2g0329101 68.939 132 37 2 18 145 28 159 3.25e-48 165
Msa0302870 MtrunA17_Chr8g0347271 29.012 486 289 16 7 472 20 469 3.80e-48 172
Msa0302870 MtrunA17_Chr7g0243761 28.330 473 289 13 7 454 12 459 4.07e-48 172
Msa0302870 MtrunA17_Chr1g0165701 28.986 483 291 18 8 462 17 475 4.54e-48 172
Msa0302870 MtrunA17_Chr8g0347281 29.752 484 288 18 7 472 19 468 5.68e-48 172
Msa0302870 MtrunA17_Chr7g0243861 27.686 484 295 15 7 458 15 475 8.07e-48 172
Msa0302870 MtrunA17_Chr6g0462551 28.838 482 281 19 4 456 2 450 1.29e-47 171
Msa0302870 MtrunA17_Chr5g0414321 29.012 486 293 14 7 481 12 456 1.96e-47 170
Msa0302870 MtrunA17_Chr8g0336741 29.806 463 291 12 7 455 14 456 2.01e-47 170
Msa0302870 MtrunA17_Chr7g0232311 28.486 502 290 14 1 474 1 461 1.03e-46 168
Msa0302870 MtrunA17_Chr4g0032331 29.701 468 292 14 4 463 6 444 2.22e-46 167
Msa0302870 MtrunA17_Chr7g0232401 30.000 480 286 17 12 472 15 463 3.18e-46 167
Msa0302870 MtrunA17_Chr5g0416821 29.979 477 278 15 2 454 10 454 3.85e-46 167
Msa0302870 MtrunA17_Chr7g0243811 30.548 383 238 8 36 411 17 378 4.49e-46 165
Msa0302870 MtrunA17_Chr8g0336651 28.747 487 294 18 7 469 782 1239 5.54e-46 172
Msa0302870 MtrunA17_Chr8g0336651 29.645 479 290 16 1 460 1 451 2.18e-43 164
Msa0302870 MtrunA17_Chr8g0336651 32.836 268 128 7 215 472 545 770 2.87e-33 134
Msa0302870 MtrunA17_Chr8g0334831 29.377 514 283 23 1 473 1 475 2.07e-45 165
Msa0302870 MtrunA17_Chr8g0370941 28.834 489 286 15 7 456 9 474 3.51e-45 165
Msa0302870 MtrunA17_Chr7g0243851 27.235 481 265 16 4 458 9 430 5.65e-45 163
Msa0302870 MtrunA17_Chr3g0112771 29.899 495 274 22 1 474 7 449 6.19e-45 163
Msa0302870 MtrunA17_Chr8g0336691 29.000 500 289 18 1 472 8 469 6.45e-45 169
Msa0302870 MtrunA17_Chr8g0336691 27.801 482 297 17 7 466 920 1372 3.28e-43 164
Msa0302870 MtrunA17_Chr8g0336691 28.482 481 273 21 7 469 481 908 5.43e-41 157
Msa0302870 MtrunA17_Chr3g0118691 27.664 488 292 16 1 456 10 468 7.56e-45 164
Msa0302870 MtrunA17_Chr6g0449931 28.211 475 298 15 1 455 1 452 7.81e-45 163
Msa0302870 MtrunA17_Chr5g0414331 28.893 488 289 18 7 480 14 457 9.80e-45 163
Msa0302870 MtrunA17_Chr5g0442581 29.835 486 289 21 3 460 2 463 9.85e-45 164
Msa0302870 MtrunA17_Chr6g0462521 28.632 475 277 16 4 456 2 436 8.49e-44 160
Msa0302870 MtrunA17_Chr3g0118671 27.096 513 305 19 1 480 1 477 9.21e-44 160
Msa0302870 MtrunA17_Chr8g0339451 29.545 440 270 14 54 472 39 459 9.50e-44 160
Msa0302870 MtrunA17_Chr6g0454401 27.677 495 282 20 3 456 7 466 1.93e-43 160
Msa0302870 MtrunA17_Chr5g0442491 29.158 487 289 18 3 460 2 461 1.97e-43 159
Msa0302870 MtrunA17_Chr3g0118771 27.459 488 291 16 2 456 17 474 4.50e-43 159
Msa0302870 MtrunA17_Chr8g0334851 28.095 420 259 13 65 455 49 454 4.86e-43 158
Msa0302870 MtrunA17_Chr5g0429711 28.803 493 293 18 7 480 12 465 6.64e-43 158
Msa0302870 MtrunA17_Chr6g0462541 29.140 477 281 15 6 456 4 449 1.33e-42 157
Msa0302870 MtrunA17_Chr5g0442521 27.888 502 303 18 3 473 2 475 1.34e-42 157
Msa0302870 MtrunA17_Chr7g0250001 26.984 504 281 16 1 475 1 446 1.68e-42 157
Msa0302870 MtrunA17_Chr8g0373301 29.117 419 252 14 73 472 70 462 3.26e-42 156
Msa0302870 MtrunA17_Chr8g0339631 30.162 431 255 17 48 460 53 455 4.50e-42 156
Msa0302870 MtrunA17_Chr6g0454261 27.178 482 300 15 3 456 7 465 6.37e-42 155
Msa0302870 MtrunA17_Chr1g0153451 27.530 494 301 15 1 472 1 459 6.75e-42 155
Msa0302870 MtrunA17_Chr1g0159551 28.947 456 285 17 11 456 19 445 7.16e-42 155
Msa0302870 MtrunA17_Chr2g0278711 29.051 506 288 19 2 474 7 474 7.26e-42 155
Msa0302870 MtrunA17_Chr8g0367221 31.049 467 264 17 7 448 799 1232 9.17e-42 159
Msa0302870 MtrunA17_Chr8g0367221 28.571 455 290 17 7 448 13 445 3.84e-39 152
Msa0302870 MtrunA17_Chr8g0367221 27.790 457 292 14 7 448 1289 1722 5.58e-38 148
Msa0302870 MtrunA17_Chr8g0339461 30.526 380 222 12 120 477 113 472 1.11e-41 155
Msa0302870 MtrunA17_Chr4g0053501 29.150 494 283 24 6 474 11 462 1.13e-41 155
Msa0302870 MtrunA17_Chr4g0029131 30.786 458 274 16 7 451 13 440 1.63e-41 157
Msa0302870 MtrunA17_Chr4g0050341 28.392 479 298 16 4 456 17 476 1.86e-41 154
Msa0302870 MtrunA17_Chr5g0403641 37.302 252 129 8 216 447 234 476 3.27e-41 154
Msa0302870 MtrunA17_Chr2g0302961 27.826 460 292 16 14 455 13 450 3.83e-41 153
Msa0302870 MtrunA17_Chr8g0377921 29.459 499 285 18 5 475 3 462 4.13e-41 153
Msa0302870 MtrunA17_Chr8g0336321 27.812 489 294 18 7 475 8 457 6.01e-41 152
Msa0302870 MtrunA17_Chr6g0454291 27.607 489 287 18 4 456 5 462 8.34e-41 152
Msa0302870 MtrunA17_Chr1g0161351 29.796 490 298 20 7 478 38 499 1.99e-40 152
Msa0302870 MtrunA17_Chr6g0454331 25.820 488 299 18 4 456 5 464 2.33e-40 151
Msa0302870 MtrunA17_Chr6g0464881 27.651 481 293 18 8 474 13 452 2.49e-40 150
Msa0302870 MtrunA17_Chr8g0339601 33.942 274 152 7 215 472 66 326 4.05e-40 147
Msa0302870 MtrunA17_Chr6g0453951 26.559 497 289 18 3 460 54 513 4.29e-40 151
Msa0302870 MtrunA17_Chr1g0207981 28.858 499 298 19 7 480 14 480 4.46e-40 150
Msa0302870 MtrunA17_Chr6g0454141 26.955 486 296 17 3 456 7 465 4.49e-40 150
Msa0302870 MtrunA17_Chr8g0336251 27.607 489 295 18 7 475 8 457 5.01e-40 150
Msa0302870 MtrunA17_Chr8g0339441 40.000 220 108 6 266 472 217 425 5.07e-40 149
Msa0302870 MtrunA17_Chr3g0118701 26.471 476 293 15 1 446 10 458 5.77e-40 150
Msa0302870 MtrunA17_Chr1g0196851 27.527 465 283 14 7 451 50 480 6.59e-40 150
Msa0302870 MtrunA17_Chr3g0122001 28.947 494 305 15 1 473 481 949 8.07e-40 153
Msa0302870 MtrunA17_Chr3g0122001 27.723 505 318 16 1 483 1 480 1.47e-35 140
Msa0302870 MtrunA17_Chr1g0207831 27.181 493 302 15 7 478 9 465 8.26e-40 149
Msa0302870 MtrunA17_Chr5g0409591 25.833 480 279 14 5 437 3 452 8.95e-40 150
Msa0302870 MtrunA17_Chr7g0217881 28.238 471 271 17 3 446 7 437 9.38e-40 149
Msa0302870 MtrunA17_Chr6g0464921 28.106 491 281 19 7 474 12 453 1.36e-39 149
Msa0302870 MtrunA17_Chr6g0454321 26.477 491 290 18 3 456 7 463 1.68e-39 151
Msa0302870 MtrunA17_Chr5g0442541 28.898 481 289 17 3 460 2 452 1.71e-39 149
Msa0302870 MtrunA17_Chr5g0442601 29.330 433 258 17 3 411 401 809 1.88e-39 152
Msa0302870 MtrunA17_Chr5g0442601 28.571 322 186 12 99 406 42 333 2.89e-23 103
Msa0302870 MtrunA17_Chr3g0118711 28.125 480 296 18 3 456 10 466 1.97e-39 149
Msa0302870 MtrunA17_Chr5g0442511 27.521 476 277 20 3 452 46 479 2.48e-39 149
Msa0302870 MtrunA17_Chr3g0078841 26.680 491 287 18 4 456 8 463 5.40e-39 147
Msa0302870 MtrunA17_Chr2g0302991 28.571 455 280 18 16 448 15 446 5.86e-39 147
Msa0302870 MtrunA17_Chr6g0464841 27.721 487 293 18 8 478 13 456 1.30e-38 146
Msa0302870 MtrunA17_Chr1g0207971 26.305 498 310 17 1 481 1 458 1.46e-38 145
Msa0302870 MtrunA17_Chr5g0426401 34.074 270 151 8 213 473 56 307 1.74e-38 142
Msa0302870 MtrunA17_Chr1g0153461 39.720 214 105 5 266 466 3 205 2.02e-38 139
Msa0302870 MtrunA17_Chr6g0454341 26.025 488 296 18 3 456 7 463 2.07e-38 145
Msa0302870 MtrunA17_Chr1g0207861 29.774 487 292 18 7 473 9 465 2.17e-38 145
Msa0302870 MtrunA17_Chr6g0454151 26.892 502 302 17 3 473 7 474 2.34e-38 145
Msa0302870 MtrunA17_Chr7g0218831 25.157 477 304 15 8 476 8 439 2.37e-38 145
Msa0302870 MtrunA17_Chr6g0454191 26.733 505 304 19 2 473 6 477 3.82e-38 145
Msa0302870 MtrunA17_Chr4g0040711 27.922 462 281 16 7 449 9 437 4.28e-38 144
Msa0302870 MtrunA17_Chr6g0454131 26.953 512 288 20 4 473 8 475 5.46e-38 145
Msa0302870 MtrunA17_Chr3g0121991 29.341 501 294 20 1 473 74 542 7.16e-38 145
Msa0302870 MtrunA17_Chr1g0173121 36.466 266 153 8 215 474 205 460 7.56e-38 144
Msa0302870 MtrunA17_Chr3g0118661 27.557 479 301 16 2 456 9 465 9.43e-38 144
Msa0302870 MtrunA17_Chr4g0042891 28.721 477 284 18 7 458 8 453 9.71e-38 144
Msa0302870 MtrunA17_Chr3g0098111 26.994 489 303 17 7 473 10 466 1.32e-37 144
Msa0302870 MtrunA17_Chr3g0079711 45.029 171 82 6 292 452 2 170 1.38e-37 136
Msa0302870 MtrunA17_Chr6g0454301 26.000 500 309 14 3 473 260 727 1.93e-37 145
Msa0302870 MtrunA17_Chr6g0454301 33.333 195 110 7 266 456 37 215 3.51e-24 106
Msa0302870 MtrunA17_Chr6g0464871 29.539 369 221 11 119 475 124 465 2.00e-37 143
Msa0302870 MtrunA17_Chr6g0464861 28.982 383 229 11 110 478 102 455 3.26e-37 142
Msa0302870 MtrunA17_Chr5g0448521 26.283 487 291 19 3 456 2 453 4.46e-37 142
Msa0302870 MtrunA17_Chr8g0382021 26.600 500 287 18 11 478 39 490 5.96e-37 142
Msa0302870 MtrunA17_Chr7g0232351 31.204 407 229 15 1 385 1 378 6.16e-37 139
Msa0302870 MtrunA17_Chr8g0336331 26.087 483 301 16 3 456 7 462 6.47e-37 142
Msa0302870 MtrunA17_Chr4g0040691 28.139 462 280 18 7 449 9 437 7.23e-37 141
Msa0302870 MtrunA17_Chr7g0243611 29.688 320 182 7 124 424 1 296 1.27e-36 137
Msa0302870 MtrunA17_Chr7g0243711 33.465 254 143 6 224 458 58 304 2.95e-36 137
Msa0302870 MtrunA17_Chr3g0112761 29.936 471 265 22 7 456 9 435 4.19e-36 139
Msa0302870 MtrunA17_Chr6g0454201 27.366 486 292 16 4 456 9 466 4.22e-36 139
Msa0302870 MtrunA17_Chr7g0241781 28.043 460 265 21 3 451 6 410 5.75e-36 138
Msa0302870 MtrunA17_Chr7g0218841 25.887 479 299 18 8 476 8 440 6.08e-36 138
Msa0302870 MtrunA17_Chr6g0454181 25.355 493 295 17 3 456 7 465 6.36e-36 139
Msa0302870 MtrunA17_Chr8g0359821 25.562 489 302 17 3 460 7 464 1.16e-35 138
Msa0302870 MtrunA17_Chr6g0466841 28.698 453 280 19 7 448 19 439 1.46e-35 137
Msa0302870 MtrunA17_Chr7g0218821 26.752 471 285 15 8 457 7 438 1.86e-35 137
Msa0302870 MtrunA17_Chr7g0218811 26.782 463 282 14 8 456 17 436 2.52e-35 137
Msa0302870 MtrunA17_Chr3g0118751 25.462 487 275 14 1 456 1 430 4.84e-35 136
Msa0302870 MtrunA17_Chr6g0454121 25.819 519 285 20 4 473 8 475 5.47e-35 136
Msa0302870 MtrunA17_Chr8g0357361 36.232 207 117 4 213 414 59 255 5.80e-35 131
Msa0302870 MtrunA17_Chr6g0454361 25.147 509 304 17 4 474 9 478 1.14e-34 135
Msa0302870 MtrunA17_Chr6g0453961 26.122 490 294 19 4 456 17 475 1.27e-34 135
Msa0302870 MtrunA17_Chr6g0466831 27.409 467 297 18 7 462 19 454 1.46e-34 135
Msa0302870 MtrunA17_Chr6g0454211 25.813 492 294 17 3 456 294 752 6.83e-34 135
Msa0302870 MtrunA17_Chr6g0454211 25.352 284 152 9 128 393 3 244 1.11e-15 80.1
Msa0302870 MtrunA17_Chr6g0452771 26.800 500 279 19 3 456 7 465 1.02e-33 132
Msa0302870 MtrunA17_Chr4g0053321 27.846 492 310 16 7 484 27 487 1.09e-33 133
Msa0302870 MtrunA17_Chr2g0278741 26.898 461 280 17 7 445 98 523 1.24e-33 133
Msa0302870 MtrunA17_Chr7g0249931 28.221 489 282 21 8 475 42 482 1.58e-33 132
Msa0302870 MtrunA17_Chr4g0072761 29.235 366 224 12 97 454 98 436 2.39e-33 131
Msa0302870 MtrunA17_Chr8g0365811 26.667 495 299 20 7 473 496 954 2.96e-33 134
Msa0302870 MtrunA17_Chr8g0365811 25.275 455 310 13 6 444 9 449 9.00e-32 129
Msa0302870 MtrunA17_Chr5g0393591 25.326 383 230 10 103 480 108 439 3.00e-33 131
Msa0302870 MtrunA17_Chr2g0278721 27.133 457 284 21 7 445 16 441 3.27e-33 134
Msa0302870 MtrunA17_Chr2g0278721 26.170 470 281 21 7 445 518 952 2.04e-29 122
Msa0302870 MtrunA17_Chr5g0401721 26.295 502 302 20 3 474 5 468 3.47e-33 131
Msa0302870 MtrunA17_Chr7g0249981 26.166 493 299 19 1 475 20 465 4.20e-33 131
Msa0302870 MtrunA17_Chr4g0029151 27.609 460 286 15 7 451 21 448 5.63e-33 130
Msa0302870 MtrunA17_Chr4g0042931 33.865 251 152 7 217 458 206 451 5.94e-33 130
Msa0302870 MtrunA17_Chr5g0431371 26.337 486 290 18 7 474 11 446 9.19e-33 129
Msa0302870 MtrunA17_Chr1g0207951 27.688 372 230 14 119 478 766 1110 9.37e-33 132
Msa0302870 MtrunA17_Chr1g0207951 23.784 370 247 10 119 478 228 572 3.86e-30 124
Msa0302870 MtrunA17_Chr5g0423981 27.004 474 274 22 4 456 8 430 2.61e-32 128
Msa0302870 MtrunA17_Chr7g0241801 26.957 460 270 19 3 451 6 410 4.39e-32 127
Msa0302870 MtrunA17_Chr5g0431361 25.361 485 299 16 7 474 13 451 5.81e-32 127
Msa0302870 MtrunA17_Chr8g0377941 28.169 497 285 17 5 473 6 458 6.02e-32 127
Msa0302870 MtrunA17_Chr7g0218791 26.059 472 287 19 8 459 7 436 8.34e-32 127
Msa0302870 MtrunA17_Chr5g0412111 24.449 499 318 16 3 477 2 465 8.76e-32 127
Msa0302870 MtrunA17_Chr7g0243911 38.095 189 101 5 269 448 24 205 2.39e-31 120
Msa0302870 MtrunA17_Chr1g0207931 25.514 486 269 17 7 478 93 499 3.34e-31 126
Msa0302870 MtrunA17_Chr6g0454221 35.233 193 109 6 266 456 38 216 3.85e-31 122
Msa0302870 MtrunA17_Chr8g0380531 26.585 489 304 17 7 479 11 460 5.05e-31 124
Msa0302870 MtrunA17_Chr4g0069611 26.039 457 287 18 7 448 16 436 1.39e-30 123
Msa0302870 MtrunA17_Chr5g0448551 27.619 420 251 17 1 402 1 385 3.19e-30 122
Msa0302870 MtrunA17_Chr6g0454271 33.679 193 112 6 266 456 94 272 3.98e-30 119
Msa0302870 MtrunA17_Chr5g0412101 27.336 428 245 16 7 402 13 406 4.10e-30 122
Msa0302870 MtrunA17_Chr4g0029161 29.258 458 253 19 7 451 13 412 4.92e-30 121
Msa0302870 MtrunA17_Chr5g0412131 26.682 431 243 16 7 402 13 405 5.90e-30 122
Msa0302870 MtrunA17_Chr3g0106231 22.581 496 311 15 7 484 19 459 1.08e-29 121
Msa0302870 MtrunA17_Chr6g0454351 24.490 490 286 18 3 456 9 450 1.29e-29 120
Msa0302870 MtrunA17_Chr6g0464091 26.915 457 281 17 7 442 19 443 1.32e-29 120
Msa0302870 MtrunA17_Chr5g0431421 24.435 487 298 17 7 474 11 446 1.95e-29 120
Msa0302870 MtrunA17_Chr5g0431401 25.826 484 295 18 7 474 11 446 5.30e-29 119
Msa0302870 MtrunA17_Chr7g0249961 33.803 213 116 8 266 475 68 258 7.75e-29 114
Msa0302870 MtrunA17_Chr5g0432731 27.473 273 167 6 211 474 44 294 8.39e-29 115
Msa0302870 MtrunA17_Chr2g0302851 26.569 478 289 22 7 463 17 453 1.51e-28 117
Msa0302870 MtrunA17_Chr5g0431441 24.646 495 294 19 7 473 19 462 2.00e-28 117
Msa0302870 MtrunA17_Chr6g0454251 26.014 419 246 14 3 385 4 394 3.61e-28 115
Msa0302870 MtrunA17_Chr3g0118721 30.796 289 169 11 182 456 4 275 1.42e-27 112
Msa0302870 MtrunA17_Chr4g0066141 38.049 205 100 7 286 469 146 344 1.61e-27 113
Msa0302870 MtrunA17_Chr4g0066141 27.692 195 120 6 36 229 8 182 6.63e-14 73.2
Msa0302870 MtrunA17_Chr2g0283041 24.587 484 317 17 7 475 8 458 1.68e-27 114
Msa0302870 MtrunA17_Chr3g0106251 27.740 292 179 8 201 484 34 301 6.99e-27 110
Msa0302870 MtrunA17_Chr4g0072771 27.493 371 224 13 97 454 111 449 5.43e-26 110
Msa0302870 MtrunA17_Chr2g0319791 26.477 457 294 15 7 449 9 437 8.41e-26 109
Msa0302870 MtrunA17_Chr7g0231631 29.297 256 145 6 214 454 6 240 2.13e-25 105
Msa0302870 MtrunA17_Chr2g0319801 24.729 461 297 16 7 449 9 437 1.03e-24 106
Msa0302870 MtrunA17_Chr2g0319751 24.681 470 286 14 7 449 486 914 1.29e-24 107
Msa0302870 MtrunA17_Chr2g0319751 23.644 461 278 15 7 449 9 413 1.72e-20 95.1
Msa0302870 MtrunA17_Chr2g0319731 25.918 463 289 17 7 449 26 454 2.03e-24 105
Msa0302870 MtrunA17_Chr4g0039881 25.764 458 292 18 16 455 2 429 2.55e-24 105
Msa0302870 MtrunA17_Chr5g0427571 29.707 239 146 5 218 442 45 275 3.31e-24 102
Msa0302870 MtrunA17_Chr6g0482061 27.619 315 207 9 154 456 160 465 7.16e-23 101
Msa0302870 MtrunA17_Chr8g0355011 32.275 189 100 6 276 456 179 347 1.06e-22 99.4
Msa0302870 MtrunA17_Chr6g0454171 26.032 315 166 12 168 456 22 295 1.55e-22 98.2
Msa0302870 MtrunA17_Chr3g0092031 34.783 184 104 6 267 448 4 173 1.90e-22 95.1
Msa0302870 MtrunA17_Chr2g0319761 23.377 462 302 14 7 449 9 437 2.42e-22 99.4
Msa0302870 MtrunA17_Chr5g0431431 28.704 216 120 8 212 418 149 339 7.70e-22 97.1
Msa0302870 MtrunA17_Chr6g0454371 31.429 175 94 6 289 456 1 156 1.04e-21 92.0
Msa0302870 MtrunA17_Chr8g0337381 38.281 128 72 2 345 472 1 121 4.16e-20 86.3
Msa0302870 MtrunA17_Chr8g0336261 34.694 147 82 5 289 434 1 134 6.60e-20 85.9
Msa0302870 MtrunA17_Chr5g0442501 25.688 327 208 12 3 316 2 306 9.55e-20 90.1
Msa0302870 MtrunA17_Chr7g0243731 45.833 72 39 0 340 411 3 74 2.33e-18 79.7
Msa0302870 MtrunA17_Chr6g0454231 40.171 117 60 5 341 455 92 200 8.76e-17 82.8
Msa0302870 MtrunA17_Chr2g0321331 26.778 239 120 7 215 449 59 246 9.86e-17 80.5
Msa0302870 MtrunA17_Chr7g0250021 25.382 327 193 13 8 313 14 310 1.85e-16 80.5
Msa0302870 MtrunA17_Chr1g0207881 33.566 143 86 3 339 478 250 386 8.42e-16 79.3
Msa0302870 MtrunA17_Chr8g0334841 37.864 103 59 4 215 315 37 136 3.42e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302870 AT5G12890.1 52.138 491 210 7 1 476 1 481 0.0 525
Msa0302870 AT4G34131.1 31.743 482 279 14 4 457 8 467 1.05e-72 238
Msa0302870 AT2G15480.1 30.739 501 291 15 1 473 5 477 5.37e-72 236
Msa0302870 AT2G36770.1 31.643 493 276 15 8 466 16 481 1.05e-71 236
Msa0302870 AT2G15480.2 30.845 509 290 17 1 473 5 487 2.16e-71 235
Msa0302870 AT2G15490.3 30.060 499 293 14 3 473 4 474 1.78e-70 232
Msa0302870 AT2G15490.1 30.279 502 291 15 3 473 4 477 2.66e-70 232
Msa0302870 AT2G36780.1 32.506 443 268 11 8 437 16 440 5.79e-70 231
Msa0302870 AT2G36750.1 30.738 488 286 14 8 466 12 476 8.82e-68 225
Msa0302870 AT4G34138.1 31.984 494 285 15 4 473 9 475 3.63e-66 221
Msa0302870 AT2G36800.1 32.075 477 279 16 8 456 14 473 8.58e-66 220
Msa0302870 AT1G51210.1 34.382 445 253 15 4 442 18 429 1.03e-65 218
Msa0302870 AT3G53150.1 30.472 466 283 11 2 441 18 468 5.10e-65 219
Msa0302870 AT2G16890.2 32.929 495 286 17 5 482 8 473 6.73e-65 218
Msa0302870 AT5G03490.1 31.078 473 287 13 7 473 20 459 9.46e-65 217
Msa0302870 AT1G73880.1 30.000 480 298 13 4 473 12 463 1.37e-63 214
Msa0302870 AT4G34135.1 30.243 453 271 12 4 433 9 439 3.18e-63 213
Msa0302870 AT3G53160.1 29.938 481 285 15 8 457 10 469 9.01e-63 212
Msa0302870 AT2G36790.1 31.936 501 292 15 8 480 15 494 1.12e-62 212
Msa0302870 AT2G36760.1 30.426 493 282 17 8 466 16 481 3.59e-62 211
Msa0302870 AT1G10400.1 31.352 488 288 17 3 474 4 460 3.94e-60 204
Msa0302870 AT2G16890.3 33.413 419 242 13 5 410 8 402 5.71e-59 200
Msa0302870 AT5G14860.1 30.080 502 292 17 8 481 10 480 1.08e-57 199
Msa0302870 AT5G59580.1 30.290 482 294 17 4 480 7 451 3.62e-55 191
Msa0302870 AT5G59590.1 30.041 486 291 18 1 475 1 448 5.28e-53 185
Msa0302870 AT3G46660.1 30.642 483 280 20 4 473 12 452 1.23e-51 182
Msa0302870 AT3G46670.1 30.470 489 280 20 1 473 1 445 1.47e-51 181
Msa0302870 AT1G22400.1 29.916 478 288 17 2 454 9 464 2.21e-51 182
Msa0302870 AT5G38040.1 28.419 468 288 15 14 473 18 446 5.25e-51 180
Msa0302870 AT1G22360.1 30.247 486 277 18 1 454 5 460 7.65e-51 180
Msa0302870 AT3G46690.1 27.789 475 305 14 3 473 6 446 8.54e-51 179
Msa0302870 AT1G22340.1 29.862 509 281 18 2 473 9 478 1.38e-50 179
Msa0302870 AT1G22380.1 29.958 474 290 14 3 454 10 463 1.73e-49 177
Msa0302870 AT1G22360.2 30.719 459 261 16 1 428 5 437 2.61e-49 176
Msa0302870 AT2G29740.1 29.259 499 299 17 1 473 1 471 5.66e-49 175
Msa0302870 AT1G05675.1 29.243 489 292 16 1 474 1 450 2.83e-48 172
Msa0302870 AT2G29710.1 29.960 494 279 16 7 473 6 459 8.22e-48 172
Msa0302870 AT2G31750.1 29.980 497 272 18 4 474 6 452 1.85e-47 170
Msa0302870 AT2G31750.2 30.080 502 275 21 4 479 6 457 2.78e-47 171
Msa0302870 AT1G01390.1 30.550 491 283 19 1 465 1 459 4.36e-47 170
Msa0302870 AT2G18570.1 28.414 454 276 17 16 446 15 442 5.33e-47 169
Msa0302870 AT2G29730.1 28.834 489 291 16 7 473 6 459 5.69e-47 169
Msa0302870 AT1G01390.2 30.550 491 283 19 1 465 18 476 6.05e-47 170
Msa0302870 AT1G05680.1 29.039 489 293 16 1 474 1 450 6.15e-47 169
Msa0302870 AT3G21750.1 29.615 493 267 21 4 456 2 454 8.23e-47 169
Msa0302870 AT3G46700.1 28.778 483 287 18 2 473 5 441 8.85e-47 168
Msa0302870 AT1G22370.2 31.535 482 269 19 2 454 9 458 1.26e-46 169
Msa0302870 AT3G16520.1 26.667 480 298 16 4 460 3 451 1.60e-46 168
Msa0302870 AT2G31790.1 27.869 488 300 15 2 474 4 454 2.62e-46 167
Msa0302870 AT3G46680.1 28.333 480 300 17 1 473 4 446 2.81e-46 167
Msa0302870 AT1G01420.1 29.132 484 286 20 7 466 9 459 6.36e-46 167
Msa0302870 AT1G01420.2 29.132 484 286 20 7 466 12 462 6.85e-46 167
Msa0302870 AT3G16520.2 26.724 464 286 16 4 444 3 435 2.57e-45 164
Msa0302870 AT1G07240.1 29.314 481 294 18 7 461 6 466 2.88e-45 165
Msa0302870 AT3G16520.3 26.724 464 286 16 4 444 3 435 3.41e-45 164
Msa0302870 AT2G18560.1 38.367 245 131 5 215 446 115 352 4.12e-45 162
Msa0302870 AT5G49690.1 29.508 488 281 22 3 473 7 448 2.55e-44 162
Msa0302870 AT4G01070.1 27.389 471 293 17 7 455 9 452 3.54e-44 162
Msa0302870 AT2G36970.1 26.395 466 311 15 2 453 6 453 4.60e-44 162
Msa0302870 AT5G66690.1 26.891 476 278 15 4 447 5 442 4.98e-44 162
Msa0302870 AT5G26310.1 27.158 475 278 16 4 447 5 442 5.29e-44 161
Msa0302870 AT1G07250.1 27.400 500 309 21 1 473 1 473 8.31e-44 161
Msa0302870 AT2G29750.1 27.912 498 300 17 3 473 5 470 2.78e-43 159
Msa0302870 AT4G15280.1 28.000 500 301 20 4 474 2 471 4.66e-43 159
Msa0302870 AT4G15280.2 28.056 499 300 20 4 473 34 502 6.81e-43 159
Msa0302870 AT3G21790.1 28.261 460 278 16 58 478 34 480 8.20e-43 159
Msa0302870 AT3G50740.1 36.122 263 138 7 216 457 207 460 1.02e-42 158
Msa0302870 AT3G46650.1 26.987 478 294 16 1 473 5 432 1.49e-42 157
Msa0302870 AT3G46720.1 28.157 483 286 18 2 473 5 437 5.64e-42 155
Msa0302870 AT1G07260.1 28.056 499 302 19 1 473 1 468 6.89e-42 155
Msa0302870 AT4G36770.1 25.918 463 288 14 16 453 14 446 7.68e-42 155
Msa0302870 AT5G38010.1 27.755 490 297 18 1 473 1 450 4.03e-41 153
Msa0302870 AT1G78270.1 27.615 478 294 19 2 452 9 461 7.68e-41 153
Msa0302870 AT2G23260.1 27.386 482 293 18 7 474 13 451 2.94e-40 150
Msa0302870 AT5G05870.1 27.066 484 301 18 4 473 6 451 6.55e-39 147
Msa0302870 AT2G43840.1 27.789 493 275 17 7 474 8 444 1.13e-38 146
Msa0302870 AT3G55700.1 26.932 453 289 17 5 447 7 427 1.21e-38 146
Msa0302870 AT3G21780.1 28.831 496 295 18 4 473 2 465 1.23e-38 147
Msa0302870 AT1G24100.1 28.175 504 281 19 4 478 9 460 1.44e-38 146
Msa0302870 AT2G43840.2 27.789 493 275 17 7 474 8 444 1.46e-38 146
Msa0302870 AT2G30150.2 25.514 486 307 15 5 478 12 454 1.68e-38 146
Msa0302870 AT3G11340.1 26.250 480 301 18 4 474 7 442 3.02e-38 145
Msa0302870 AT2G30140.1 25.567 485 311 14 5 480 12 455 5.23e-38 144
Msa0302870 AT2G30150.1 25.833 480 301 15 11 478 2 438 6.11e-38 144
Msa0302870 AT5G05860.1 27.500 480 299 17 1 470 1 441 6.14e-38 144
Msa0302870 AT2G30140.2 25.413 484 312 14 5 480 12 454 9.38e-38 144
Msa0302870 AT4G15260.1 33.824 272 153 9 217 474 94 352 1.14e-37 141
Msa0302870 AT4G15480.1 27.621 496 312 20 7 484 20 486 1.29e-37 144
Msa0302870 AT2G43820.1 28.221 489 286 20 3 474 4 444 1.47e-37 143
Msa0302870 AT1G06000.1 27.893 484 278 19 3 474 7 431 7.74e-37 141
Msa0302870 AT5G05880.1 27.056 462 288 16 7 448 9 441 1.05e-36 141
Msa0302870 AT5G65550.1 27.731 476 306 16 1 460 1 454 1.22e-36 141
Msa0302870 AT3G21760.1 28.825 451 238 17 4 410 2 413 1.69e-36 141
Msa0302870 AT3G02100.1 25.625 480 286 17 4 456 11 446 9.02e-36 139
Msa0302870 AT4G15500.1 26.016 492 297 20 7 473 10 459 9.55e-36 139
Msa0302870 AT1G05530.1 29.019 479 297 18 8 475 7 453 4.47e-35 136
Msa0302870 AT5G37950.2 28.291 357 224 11 33 386 11 338 8.36e-35 133
Msa0302870 AT3G21560.1 26.962 497 301 21 7 477 13 473 8.81e-35 136
Msa0302870 AT4G15490.1 26.113 494 321 17 7 484 9 474 9.25e-35 136
Msa0302870 AT3G21800.1 33.571 280 154 10 217 478 212 477 9.94e-35 136
Msa0302870 AT5G54060.1 28.870 478 280 18 6 460 13 453 1.75e-34 135
Msa0302870 AT2G28080.1 27.236 492 301 20 11 480 23 479 4.95e-34 134
Msa0302870 AT5G37950.1 27.933 358 230 10 33 386 11 344 6.23e-34 131
Msa0302870 AT1G64910.1 26.069 491 305 18 1 478 1 446 6.45e-34 133
Msa0302870 AT1G05560.1 27.789 475 301 12 8 473 7 448 1.01e-33 133
Msa0302870 AT4G34135.2 27.353 340 213 9 3 321 8 334 1.25e-33 130
Msa0302870 AT2G22590.1 26.609 466 297 19 4 451 13 451 1.36e-33 132
Msa0302870 AT1G05560.2 27.789 475 301 12 8 473 57 498 1.39e-33 133
Msa0302870 AT5G05900.1 26.446 484 291 20 7 473 9 444 1.62e-33 132
Msa0302870 AT4G14090.1 26.580 459 295 12 8 456 15 441 4.82e-33 130
Msa0302870 AT3G55710.1 25.726 482 310 18 5 474 7 452 2.45e-31 126
Msa0302870 AT5G54010.1 26.293 464 304 14 1 456 1 434 2.62e-31 125
Msa0302870 AT1G22370.1 35.268 224 121 6 242 454 78 288 7.21e-31 122
Msa0302870 AT4G27570.1 25.052 483 305 16 4 465 5 451 7.70e-31 124
Msa0302870 AT2G26480.1 24.230 487 314 16 1 475 1 444 1.09e-30 124
Msa0302870 AT4G15550.1 29.679 374 216 12 119 473 125 470 1.37e-30 124
Msa0302870 AT5G53990.1 24.508 457 300 13 1 449 1 420 3.21e-30 122
Msa0302870 AT4G27560.1 25.546 458 293 16 4 449 5 426 5.16e-30 122
Msa0302870 AT2G23250.1 24.313 473 299 17 15 474 7 433 1.12e-29 121
Msa0302870 AT5G17050.1 24.375 480 306 17 6 469 14 452 4.87e-29 119
Msa0302870 AT3G29630.1 27.193 456 292 14 1 449 1 423 1.68e-28 117
Msa0302870 AT1G64920.1 24.017 458 305 12 1 449 1 424 4.01e-28 117
Msa0302870 AT5G17030.1 24.740 481 291 21 6 465 14 444 4.90e-28 116
Msa0302870 AT5G05890.1 24.899 494 298 18 7 475 9 454 1.12e-27 115
Msa0302870 AT3G22250.1 25.053 475 286 15 1 442 3 440 1.50e-27 115
Msa0302870 AT5G17040.1 24.619 459 292 17 6 453 7 422 1.03e-26 112
Msa0302870 AT2G22930.1 23.163 449 300 12 9 449 9 420 2.62e-26 111
Msa0302870 AT1G30530.1 24.841 471 297 16 8 466 15 440 3.15e-26 111
Msa0302870 AT2G16890.4 27.476 313 202 10 5 304 8 308 7.80e-26 107
Msa0302870 AT2G16890.1 27.476 313 202 10 5 304 8 308 7.80e-26 107
Msa0302870 AT1G50580.1 24.672 458 299 12 1 449 1 421 9.53e-26 109
Msa0302870 AT4G09500.2 23.909 481 318 15 1 473 1 441 1.92e-25 108
Msa0302870 AT5G17040.2 29.412 238 149 7 218 453 100 320 4.64e-24 103
Msa0302870 AT3G29630.2 27.511 458 262 19 1 449 1 397 4.70e-24 104
Msa0302870 AT4G09500.1 30.396 227 131 6 264 473 200 416 1.66e-18 88.2
Msa0302870 AT2G15490.2 28.000 175 105 5 3 164 4 170 5.98e-17 81.3
Msa0302870 AT4G01070.2 23.978 367 229 16 7 352 9 346 1.78e-14 75.1

Find 104 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAACAATACATAGTTTA+TGG 0.163397 2_3:-59839690 None:intergenic
CTTTGAATCAAACGAGCTTC+TGG 0.209330 2_3:-59839874 None:intergenic
AGAGAATGCTTGTAAGATTA+AGG 0.211823 2_3:+59840662 Msa0302870:CDS
AATATTCCGGTTTGGTCTAT+TGG 0.219292 2_3:+59840060 Msa0302870:CDS
GGAAATGAAGATGGAGTTAA+AGG 0.256595 2_3:+59840711 Msa0302870:CDS
GCCATTCTTTGCAAGCTTTA+GGG 0.259021 2_3:-59840131 None:intergenic
GTGGTTACCATTAGGGTTTA+TGG 0.277026 2_3:+59840329 Msa0302870:CDS
TTTAGTGGTGCTAGTGGTTA+TGG 0.281612 2_3:+59839772 Msa0302870:CDS
TAGCTTGTTATTATTCTCTA+TGG 0.292692 2_3:+59839797 Msa0302870:CDS
CTGTGTTAGGTGGGAGATTA+TGG 0.295244 2_3:-59839555 None:intergenic
ATGAAGAGTGGTTACCATTA+GGG 0.315738 2_3:+59840322 Msa0302870:CDS
AGCCATTCTTTGCAAGCTTT+AGG 0.318165 2_3:-59840132 None:intergenic
AGGAGATTGATGGAGGAATT+TGG 0.321535 2_3:-59839508 None:intergenic
TCGGTATTATTCGTTTGTTT+TGG 0.328276 2_3:+59840174 Msa0302870:CDS
GAGTTAAAGGGTCATCTGTT+AGG 0.329475 2_3:+59840724 Msa0302870:CDS
TATGAAGAGTGGTTACCATT+AGG 0.334817 2_3:+59840321 Msa0302870:CDS
GTTGTTGGGTTAAGATGTTT+TGG 0.337582 2_3:-59839663 None:intergenic
AGTCATGGTGTACCTATTCT+TGG 0.354018 2_3:+59840480 Msa0302870:CDS
CACCAGGAAATTCAATATTC+CGG 0.356834 2_3:+59840047 Msa0302870:CDS
GAGAAAATTGAGTTGGTAAT+GGG 0.358299 2_3:+59840618 Msa0302870:CDS
AATAATCCTATTCCCATTCA+TGG 0.366106 2_3:+59839363 Msa0302870:CDS
GAGGTATAATAGTAAATGAT+TGG 0.376707 2_3:+59840373 Msa0302870:CDS
TAGTTTATGGTTAGGTTGTT+GGG 0.378109 2_3:-59839677 None:intergenic
GGAAGAATAATCTCTGTGAT+TGG 0.382296 2_3:+59839959 Msa0302870:CDS
ACGAATAATACCGAATTTGC+AGG 0.385747 2_3:-59840165 None:intergenic
AACCGGAATATTGAATTTCC+TGG 0.387271 2_3:-59840049 None:intergenic
GTTGTGTGGTGTGTTGATTA+TGG 0.387564 2_3:-59839458 None:intergenic
ATAGTTTATGGTTAGGTTGT+TGG 0.388942 2_3:-59839678 None:intergenic
TCAGCTTGTGAGATATTGTT+TGG 0.392679 2_3:-59839907 None:intergenic
TGATACAAAGCCTGCAAATT+CGG 0.397217 2_3:+59840155 Msa0302870:CDS
GGACCGGTTGTTCTCTCAAC+CGG 0.402099 2_3:+59840081 Msa0302870:CDS
ACCTACTTTACCTCGTGAAC+CGG 0.406311 2_3:-59840100 None:intergenic
GGAAATTCAATATTCCGGTT+TGG 0.420390 2_3:+59840052 Msa0302870:CDS
ACAATACATAGTTTATGGTT+AGG 0.421313 2_3:-59839685 None:intergenic
GAGTTTATATCAAAACCTAT+TGG 0.425246 2_3:-59840288 None:intergenic
AGTTAAAGGGTCATCTGTTA+GGG 0.440788 2_3:+59840725 Msa0302870:CDS
ACCCTAAAGCTTGCAAAGAA+TGG 0.446268 2_3:+59840130 Msa0302870:CDS
TCCGGTTTGGTCTATTGGAC+CGG 0.448853 2_3:+59840065 Msa0302870:CDS
ATCTTCTCCATAAACCCTAA+TGG 0.450302 2_3:-59840336 None:intergenic
GATGAGTTCTTATCAGCTGC+TGG 0.451436 2_3:+59840753 Msa0302870:CDS
TTTAAGGCTAAAGCTAAGAA+TGG 0.451886 2_3:-59839403 None:intergenic
GTAAGATTAAGGATATGATA+AGG 0.455582 2_3:+59840673 Msa0302870:CDS
AAGCTGATGGATTTGATGAT+TGG 0.456760 2_3:+59839923 Msa0302870:CDS
TGAGAAAATTGAGTTGGTAA+TGG 0.459637 2_3:+59840617 Msa0302870:CDS
TCTTGGGTGGCCGATGGCGG+CGG 0.461308 2_3:+59840497 Msa0302870:CDS
AGTTTGATGACAAGATTGTA+AGG 0.463090 2_3:-59839595 None:intergenic
GAAGAATAATCTCTGTGATT+GGG 0.464317 2_3:+59839960 Msa0302870:CDS
TTAAGGCTAAAGCTAAGAAT+GGG 0.481569 2_3:-59839402 None:intergenic
TAAGATTAAGGATATGATAA+GGG 0.483195 2_3:+59840674 Msa0302870:CDS
GGAGGAATTTGGTGGGAGAG+AGG 0.492852 2_3:-59839497 None:intergenic
AGGGATTGTGAGGAGATTGA+TGG 0.495583 2_3:-59839518 None:intergenic
TATGGTCGGAAGAGATGAAA+GGG 0.496705 2_3:-59839537 None:intergenic
CTTGTGCCATGAATGGGAAT+AGG 0.496940 2_3:-59839369 None:intergenic
TGGGTAGTGAGGCCACCAAT+AGG 0.499122 2_3:+59840273 Msa0302870:CDS
GAACCGGTTGAGAGAACAAC+CGG 0.508815 2_3:-59840084 None:intergenic
GTCATGGTGTACCTATTCTT+GGG 0.509552 2_3:+59840481 Msa0302870:CDS
ATGTGACCTTGTGCCATGAA+TGG 0.511625 2_3:-59839376 None:intergenic
AACAATATCTCACAAGCTGA+TGG 0.518344 2_3:+59839910 Msa0302870:CDS
ACCTATTCTTGGGTGGCCGA+TGG 0.518955 2_3:+59840491 Msa0302870:CDS
TATTGTTGAGAAAATTGAGT+TGG 0.519125 2_3:+59840611 Msa0302870:CDS
AGGTATAATAGTAAATGATT+GGG 0.519595 2_3:+59840374 Msa0302870:CDS
GCTACACAAATGATGCAACT+TGG 0.519988 2_3:+59840216 Msa0302870:CDS
ATAAGGGATGCTGTGAAAGA+TGG 0.525494 2_3:+59840690 Msa0302870:CDS
GCCATCGGCCACCCAAGAAT+AGG 0.527856 2_3:-59840492 None:intergenic
AGAGATTGGTGTTTGTGTTG+AGG 0.530980 2_3:+59840551 Msa0302870:CDS
TGTGATTGGGTCAACTCAGA+TGG 0.535239 2_3:+59839973 Msa0302870:CDS
ACCGGTCCAATAGACCAAAC+CGG 0.539145 2_3:-59840066 None:intergenic
TCTGAGTCTGTGAATCTATG+AGG 0.543299 2_3:-59839829 None:intergenic
TTATGGTCGGAAGAGATGAA+AGG 0.544282 2_3:-59839538 None:intergenic
AAGATTGTGGAGACAAAGAG+AGG 0.544953 2_3:+59840354 Msa0302870:CDS
GAAAATTGAGTTGGTAATGG+GGG 0.546210 2_3:+59840620 Msa0302870:CDS
GAAATGAAGATGGAGTTAAA+GGG 0.548447 2_3:+59840712 Msa0302870:CDS
GTGAAAGATGGAAATGAAGA+TGG 0.548894 2_3:+59840702 Msa0302870:CDS
TGTGACCTTGTGCCATGAAT+GGG 0.550127 2_3:-59839375 None:intergenic
GATTGATGGAGGAATTTGGT+GGG 0.552915 2_3:-59839504 None:intergenic
TTTATATCAAAACCTATTGG+TGG 0.556086 2_3:-59840285 None:intergenic
AGAAAATTGAGTTGGTAATG+GGG 0.565415 2_3:+59840619 Msa0302870:CDS
AGGGTTTATGGAGAAGATTG+TGG 0.566155 2_3:+59840341 Msa0302870:CDS
GATGCAACTTGGAATCGCGT+TGG 0.574777 2_3:+59840227 Msa0302870:CDS
TATTCTTGGGTGGCCGATGG+CGG 0.577978 2_3:+59840494 Msa0302870:CDS
AAGAGATGAAAGGGATTGTG+AGG 0.582242 2_3:-59839528 None:intergenic
GTTTGTGTTGAGGTTGCTAG+AGG 0.587344 2_3:+59840561 Msa0302870:CDS
AGATTGATGGAGGAATTTGG+TGG 0.590635 2_3:-59839505 None:intergenic
AAGCTGTTGGAAGAAGAGAT+TGG 0.593734 2_3:+59840537 Msa0302870:CDS
TTGTGGTTGGAACTCAGTGT+TGG 0.595652 2_3:+59840449 Msa0302870:CDS
TTGGGCTCAACTACTTCACC+AGG 0.599872 2_3:+59840031 Msa0302870:CDS
CTATTCCCATTCATGGCACA+AGG 0.606231 2_3:+59839370 Msa0302870:CDS
CAGAGTTTAAATATGAAGAG+TGG 0.606966 2_3:+59840310 Msa0302870:CDS
ACCGGTTCACGAGGTAAAGT+AGG 0.615270 2_3:+59840099 Msa0302870:CDS
AAAATTTCATCTGGGTAGTG+AGG 0.621613 2_3:+59840262 Msa0302870:CDS
GATTGTGAGGAGATTGATGG+AGG 0.623246 2_3:-59839515 None:intergenic
TGCTAGAGGGAAGAGTTGTG+AGG 0.626646 2_3:+59840575 Msa0302870:CDS
GTTCTCTCAACCGGTTCACG+AGG 0.628003 2_3:+59840090 Msa0302870:CDS
TTTGTGTTGAGGTTGCTAGA+GGG 0.628172 2_3:+59840562 Msa0302870:CDS
TCAACCGTCGCTAAAGAACT+CGG 0.631780 2_3:+59839733 Msa0302870:CDS
GTTTGATGACAAGATTGTAA+GGG 0.635840 2_3:-59839594 None:intergenic
GTGTTGGAATCATTGAGTCA+TGG 0.651788 2_3:+59840465 Msa0302870:CDS
AACACCGAGTTCTTTAGCGA+CGG 0.652620 2_3:-59839737 None:intergenic
GGTTCACGAGGTAAAGTAGG+TGG 0.656332 2_3:+59840102 Msa0302870:CDS
GTTAGGTGGGAGATTATGGT+CGG 0.657740 2_3:-59839551 None:intergenic
CAAGTCGAGATATTGTCACA+TGG 0.667108 2_3:+59840402 Msa0302870:CDS
TGTGACAATATCTCGACTTG+TGG 0.667261 2_3:-59840399 None:intergenic
ATGGTGTACCTATTCTTGGG+TGG 0.667809 2_3:+59840484 Msa0302870:CDS
GTTAAAGGGTCATCTGTTAG+GGG 0.755344 2_3:+59840726 Msa0302870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTTTCTGATATTTTCTT+TGG + chr2_3:59839703-59839722 Msa0302870:CDS 20.0%
!! AGGTATAATAGTAAATGATT+GGG + chr2_3:59840374-59840393 Msa0302870:CDS 20.0%
!! TAAGATTAAGGATATGATAA+GGG + chr2_3:59840674-59840693 Msa0302870:CDS 20.0%
!!! ATTGTTTCTGATATTTTCTT+TGG + chr2_3:59839703-59839722 Msa0302870:CDS 20.0%
!! AGGTATAATAGTAAATGATT+GGG + chr2_3:59840374-59840393 Msa0302870:CDS 20.0%
!! TAAGATTAAGGATATGATAA+GGG + chr2_3:59840674-59840693 Msa0302870:CDS 20.0%
!!! AGTTTTTGGATTTTTGTTCT+AGG - chr2_3:59839429-59839448 None:intergenic 25.0%
! ACAATACATAGTTTATGGTT+AGG - chr2_3:59839688-59839707 None:intergenic 25.0%
! CAGAAACAATACATAGTTTA+TGG - chr2_3:59839693-59839712 None:intergenic 25.0%
!! TTTCTGATATTTTCTTTGGT+TGG + chr2_3:59839707-59839726 Msa0302870:CDS 25.0%
!!! GTTTTTCATGTTGTTTTTAG+TGG + chr2_3:59839757-59839776 Msa0302870:CDS 25.0%
!!! TAGCTTGTTATTATTCTCTA+TGG + chr2_3:59839797-59839816 Msa0302870:CDS 25.0%
! TTTATATCAAAACCTATTGG+TGG - chr2_3:59840288-59840307 None:intergenic 25.0%
! GAGTTTATATCAAAACCTAT+TGG - chr2_3:59840291-59840310 None:intergenic 25.0%
! GAGGTATAATAGTAAATGAT+TGG + chr2_3:59840373-59840392 Msa0302870:CDS 25.0%
!!! GTTTTTTAATTGTAAGCTGT+TGG + chr2_3:59840524-59840543 Msa0302870:CDS 25.0%
! TATTGTTGAGAAAATTGAGT+TGG + chr2_3:59840611-59840630 Msa0302870:CDS 25.0%
! GTAAGATTAAGGATATGATA+AGG + chr2_3:59840673-59840692 Msa0302870:CDS 25.0%
!!! AGTTTTTGGATTTTTGTTCT+AGG - chr2_3:59839429-59839448 None:intergenic 25.0%
! ACAATACATAGTTTATGGTT+AGG - chr2_3:59839688-59839707 None:intergenic 25.0%
! CAGAAACAATACATAGTTTA+TGG - chr2_3:59839693-59839712 None:intergenic 25.0%
!! TTTCTGATATTTTCTTTGGT+TGG + chr2_3:59839707-59839726 Msa0302870:CDS 25.0%
!!! GTTTTTCATGTTGTTTTTAG+TGG + chr2_3:59839757-59839776 Msa0302870:CDS 25.0%
!!! TAGCTTGTTATTATTCTCTA+TGG + chr2_3:59839797-59839816 Msa0302870:CDS 25.0%
! TTTATATCAAAACCTATTGG+TGG - chr2_3:59840288-59840307 None:intergenic 25.0%
! GAGTTTATATCAAAACCTAT+TGG - chr2_3:59840291-59840310 None:intergenic 25.0%
! GAGGTATAATAGTAAATGAT+TGG + chr2_3:59840373-59840392 Msa0302870:CDS 25.0%
!!! GTTTTTTAATTGTAAGCTGT+TGG + chr2_3:59840524-59840543 Msa0302870:CDS 25.0%
! TATTGTTGAGAAAATTGAGT+TGG + chr2_3:59840611-59840630 Msa0302870:CDS 25.0%
! GTAAGATTAAGGATATGATA+AGG + chr2_3:59840673-59840692 Msa0302870:CDS 25.0%
AATAATCCTATTCCCATTCA+TGG + chr2_3:59839363-59839382 Msa0302870:CDS 30.0%
TTAAGGCTAAAGCTAAGAAT+GGG - chr2_3:59839405-59839424 None:intergenic 30.0%
! TTTAAGGCTAAAGCTAAGAA+TGG - chr2_3:59839406-59839425 None:intergenic 30.0%
!! GGATTTTTGTTCTAGGTTTA+AGG - chr2_3:59839422-59839441 None:intergenic 30.0%
!! TATGGTGATGTTGTAGTTTT+TGG - chr2_3:59839443-59839462 None:intergenic 30.0%
! GTTTGATGACAAGATTGTAA+GGG - chr2_3:59839597-59839616 None:intergenic 30.0%
! AGTTTGATGACAAGATTGTA+AGG - chr2_3:59839598-59839617 None:intergenic 30.0%
!! GTTTTTGAAGGATGGTTTTA+AGG - chr2_3:59839638-59839657 None:intergenic 30.0%
!! GTTTTGGATGATGTTTTTGA+AGG - chr2_3:59839650-59839669 None:intergenic 30.0%
! TAGTTTATGGTTAGGTTGTT+GGG - chr2_3:59839680-59839699 None:intergenic 30.0%
! ATAGTTTATGGTTAGGTTGT+TGG - chr2_3:59839681-59839700 None:intergenic 30.0%
!! ATGATTGGTCGATTTTTCAA+AGG + chr2_3:59839938-59839957 Msa0302870:CDS 30.0%
GAAGAATAATCTCTGTGATT+GGG + chr2_3:59839960-59839979 Msa0302870:CDS 30.0%
!!! TTTCAGATTTTGACTCTGTT+GGG + chr2_3:59840013-59840032 Msa0302870:CDS 30.0%
! TCGGTATTATTCGTTTGTTT+TGG + chr2_3:59840174-59840193 Msa0302870:CDS 30.0%
AAAGTGGCAAAAATTTCATC+TGG + chr2_3:59840253-59840272 Msa0302870:CDS 30.0%
AAGTGGCAAAAATTTCATCT+GGG + chr2_3:59840254-59840273 Msa0302870:CDS 30.0%
CAGAGTTTAAATATGAAGAG+TGG + chr2_3:59840310-59840329 Msa0302870:CDS 30.0%
!! TGAGAAAATTGAGTTGGTAA+TGG + chr2_3:59840617-59840636 Msa0302870:CDS 30.0%
!! GAGAAAATTGAGTTGGTAAT+GGG + chr2_3:59840618-59840637 Msa0302870:CDS 30.0%
!! AGAAAATTGAGTTGGTAATG+GGG + chr2_3:59840619-59840638 Msa0302870:CDS 30.0%
AGAGAATGCTTGTAAGATTA+AGG + chr2_3:59840662-59840681 Msa0302870:CDS 30.0%
GAAATGAAGATGGAGTTAAA+GGG + chr2_3:59840712-59840731 Msa0302870:CDS 30.0%
AATAATCCTATTCCCATTCA+TGG + chr2_3:59839363-59839382 Msa0302870:CDS 30.0%
TTAAGGCTAAAGCTAAGAAT+GGG - chr2_3:59839405-59839424 None:intergenic 30.0%
! TTTAAGGCTAAAGCTAAGAA+TGG - chr2_3:59839406-59839425 None:intergenic 30.0%
!! GGATTTTTGTTCTAGGTTTA+AGG - chr2_3:59839422-59839441 None:intergenic 30.0%
!! TATGGTGATGTTGTAGTTTT+TGG - chr2_3:59839443-59839462 None:intergenic 30.0%
! GTTTGATGACAAGATTGTAA+GGG - chr2_3:59839597-59839616 None:intergenic 30.0%
! AGTTTGATGACAAGATTGTA+AGG - chr2_3:59839598-59839617 None:intergenic 30.0%
!! GTTTTTGAAGGATGGTTTTA+AGG - chr2_3:59839638-59839657 None:intergenic 30.0%
!! GTTTTGGATGATGTTTTTGA+AGG - chr2_3:59839650-59839669 None:intergenic 30.0%
! TAGTTTATGGTTAGGTTGTT+GGG - chr2_3:59839680-59839699 None:intergenic 30.0%
! ATAGTTTATGGTTAGGTTGT+TGG - chr2_3:59839681-59839700 None:intergenic 30.0%
!! ATGATTGGTCGATTTTTCAA+AGG + chr2_3:59839938-59839957 Msa0302870:CDS 30.0%
GAAGAATAATCTCTGTGATT+GGG + chr2_3:59839960-59839979 Msa0302870:CDS 30.0%
!!! TTTCAGATTTTGACTCTGTT+GGG + chr2_3:59840013-59840032 Msa0302870:CDS 30.0%
! TCGGTATTATTCGTTTGTTT+TGG + chr2_3:59840174-59840193 Msa0302870:CDS 30.0%
AAAGTGGCAAAAATTTCATC+TGG + chr2_3:59840253-59840272 Msa0302870:CDS 30.0%
AAGTGGCAAAAATTTCATCT+GGG + chr2_3:59840254-59840273 Msa0302870:CDS 30.0%
CAGAGTTTAAATATGAAGAG+TGG + chr2_3:59840310-59840329 Msa0302870:CDS 30.0%
!! TGAGAAAATTGAGTTGGTAA+TGG + chr2_3:59840617-59840636 Msa0302870:CDS 30.0%
!! GAGAAAATTGAGTTGGTAAT+GGG + chr2_3:59840618-59840637 Msa0302870:CDS 30.0%
!! AGAAAATTGAGTTGGTAATG+GGG + chr2_3:59840619-59840638 Msa0302870:CDS 30.0%
AGAGAATGCTTGTAAGATTA+AGG + chr2_3:59840662-59840681 Msa0302870:CDS 30.0%
GAAATGAAGATGGAGTTAAA+GGG + chr2_3:59840712-59840731 Msa0302870:CDS 30.0%
!! TTGAGTTTTTGGATGTTGTG+TGG - chr2_3:59839475-59839494 None:intergenic 35.0%
!!! GTTTTAAGGAAAGAGAAGCT+TGG - chr2_3:59839624-59839643 None:intergenic 35.0%
!! TGGATGATGTTTTTGAAGGA+TGG - chr2_3:59839646-59839665 None:intergenic 35.0%
! GTTGTTGGGTTAAGATGTTT+TGG - chr2_3:59839666-59839685 None:intergenic 35.0%
TCAGCTTGTGAGATATTGTT+TGG - chr2_3:59839910-59839929 None:intergenic 35.0%
AACAATATCTCACAAGCTGA+TGG + chr2_3:59839910-59839929 Msa0302870:CDS 35.0%
!! AAGCTGATGGATTTGATGAT+TGG + chr2_3:59839923-59839942 Msa0302870:CDS 35.0%
GGAAGAATAATCTCTGTGAT+TGG + chr2_3:59839959-59839978 Msa0302870:CDS 35.0%
!!! GTTTCAGATTTTGACTCTGT+TGG + chr2_3:59840012-59840031 Msa0302870:CDS 35.0%
CACCAGGAAATTCAATATTC+CGG + chr2_3:59840047-59840066 Msa0302870:CDS 35.0%
AACCGGAATATTGAATTTCC+TGG - chr2_3:59840052-59840071 None:intergenic 35.0%
GGAAATTCAATATTCCGGTT+TGG + chr2_3:59840052-59840071 Msa0302870:CDS 35.0%
!! AATATTCCGGTTTGGTCTAT+TGG + chr2_3:59840060-59840079 Msa0302870:CDS 35.0%
TGATACAAAGCCTGCAAATT+CGG + chr2_3:59840155-59840174 Msa0302870:CDS 35.0%
ACGAATAATACCGAATTTGC+AGG - chr2_3:59840168-59840187 None:intergenic 35.0%
AAAATTTCATCTGGGTAGTG+AGG + chr2_3:59840262-59840281 Msa0302870:CDS 35.0%
TATGAAGAGTGGTTACCATT+AGG + chr2_3:59840321-59840340 Msa0302870:CDS 35.0%
ATGAAGAGTGGTTACCATTA+GGG + chr2_3:59840322-59840341 Msa0302870:CDS 35.0%
ATCTTCTCCATAAACCCTAA+TGG - chr2_3:59840339-59840358 None:intergenic 35.0%
!! GAAAATTGAGTTGGTAATGG+GGG + chr2_3:59840620-59840639 Msa0302870:CDS 35.0%
GTGAAAGATGGAAATGAAGA+TGG + chr2_3:59840702-59840721 Msa0302870:CDS 35.0%
GGAAATGAAGATGGAGTTAA+AGG + chr2_3:59840711-59840730 Msa0302870:CDS 35.0%
AGTTAAAGGGTCATCTGTTA+GGG + chr2_3:59840725-59840744 Msa0302870:CDS 35.0%
!! TTGAGTTTTTGGATGTTGTG+TGG - chr2_3:59839475-59839494 None:intergenic 35.0%
!!! GTTTTAAGGAAAGAGAAGCT+TGG - chr2_3:59839624-59839643 None:intergenic 35.0%
!! TGGATGATGTTTTTGAAGGA+TGG - chr2_3:59839646-59839665 None:intergenic 35.0%
! GTTGTTGGGTTAAGATGTTT+TGG - chr2_3:59839666-59839685 None:intergenic 35.0%
TCAGCTTGTGAGATATTGTT+TGG - chr2_3:59839910-59839929 None:intergenic 35.0%
AACAATATCTCACAAGCTGA+TGG + chr2_3:59839910-59839929 Msa0302870:CDS 35.0%
!! AAGCTGATGGATTTGATGAT+TGG + chr2_3:59839923-59839942 Msa0302870:CDS 35.0%
GGAAGAATAATCTCTGTGAT+TGG + chr2_3:59839959-59839978 Msa0302870:CDS 35.0%
!!! GTTTCAGATTTTGACTCTGT+TGG + chr2_3:59840012-59840031 Msa0302870:CDS 35.0%
CACCAGGAAATTCAATATTC+CGG + chr2_3:59840047-59840066 Msa0302870:CDS 35.0%
AACCGGAATATTGAATTTCC+TGG - chr2_3:59840052-59840071 None:intergenic 35.0%
GGAAATTCAATATTCCGGTT+TGG + chr2_3:59840052-59840071 Msa0302870:CDS 35.0%
!! AATATTCCGGTTTGGTCTAT+TGG + chr2_3:59840060-59840079 Msa0302870:CDS 35.0%
TGATACAAAGCCTGCAAATT+CGG + chr2_3:59840155-59840174 Msa0302870:CDS 35.0%
ACGAATAATACCGAATTTGC+AGG - chr2_3:59840168-59840187 None:intergenic 35.0%
AAAATTTCATCTGGGTAGTG+AGG + chr2_3:59840262-59840281 Msa0302870:CDS 35.0%
TATGAAGAGTGGTTACCATT+AGG + chr2_3:59840321-59840340 Msa0302870:CDS 35.0%
ATGAAGAGTGGTTACCATTA+GGG + chr2_3:59840322-59840341 Msa0302870:CDS 35.0%
ATCTTCTCCATAAACCCTAA+TGG - chr2_3:59840339-59840358 None:intergenic 35.0%
!! GAAAATTGAGTTGGTAATGG+GGG + chr2_3:59840620-59840639 Msa0302870:CDS 35.0%
GTGAAAGATGGAAATGAAGA+TGG + chr2_3:59840702-59840721 Msa0302870:CDS 35.0%
GGAAATGAAGATGGAGTTAA+AGG + chr2_3:59840711-59840730 Msa0302870:CDS 35.0%
AGTTAAAGGGTCATCTGTTA+GGG + chr2_3:59840725-59840744 Msa0302870:CDS 35.0%
!! GTTGTGTGGTGTGTTGATTA+TGG - chr2_3:59839461-59839480 None:intergenic 40.0%
!!! GGAGAGAGGTTTTGAGTTTT+TGG - chr2_3:59839486-59839505 None:intergenic 40.0%
GATTGATGGAGGAATTTGGT+GGG - chr2_3:59839507-59839526 None:intergenic 40.0%
AGATTGATGGAGGAATTTGG+TGG - chr2_3:59839508-59839527 None:intergenic 40.0%
AGGAGATTGATGGAGGAATT+TGG - chr2_3:59839511-59839530 None:intergenic 40.0%
AAGAGATGAAAGGGATTGTG+AGG - chr2_3:59839531-59839550 None:intergenic 40.0%
TATGGTCGGAAGAGATGAAA+GGG - chr2_3:59839540-59839559 None:intergenic 40.0%
TTATGGTCGGAAGAGATGAA+AGG - chr2_3:59839541-59839560 None:intergenic 40.0%
! CAGTGTTTTCTGTGTTAGGT+GGG - chr2_3:59839567-59839586 None:intergenic 40.0%
! TCAGTGTTTTCTGTGTTAGG+TGG - chr2_3:59839568-59839587 None:intergenic 40.0%
! GTGTCAGTGTTTTCTGTGTT+AGG - chr2_3:59839571-59839590 None:intergenic 40.0%
!!! GTTGTTTTTAGTGGTGCTAG+TGG + chr2_3:59839766-59839785 Msa0302870:CDS 40.0%
! TTTAGTGGTGCTAGTGGTTA+TGG + chr2_3:59839772-59839791 Msa0302870:CDS 40.0%
TCTGAGTCTGTGAATCTATG+AGG - chr2_3:59839832-59839851 None:intergenic 40.0%
CTTTGAATCAAACGAGCTTC+TGG - chr2_3:59839877-59839896 None:intergenic 40.0%
ACCCTAAAGCTTGCAAAGAA+TGG + chr2_3:59840130-59840149 Msa0302870:CDS 40.0%
GCCATTCTTTGCAAGCTTTA+GGG - chr2_3:59840134-59840153 None:intergenic 40.0%
AGCCATTCTTTGCAAGCTTT+AGG - chr2_3:59840135-59840154 None:intergenic 40.0%
GCTACACAAATGATGCAACT+TGG + chr2_3:59840216-59840235 Msa0302870:CDS 40.0%
GTGGTTACCATTAGGGTTTA+TGG + chr2_3:59840329-59840348 Msa0302870:CDS 40.0%
AGGGTTTATGGAGAAGATTG+TGG + chr2_3:59840341-59840360 Msa0302870:CDS 40.0%
AAGATTGTGGAGACAAAGAG+AGG + chr2_3:59840354-59840373 Msa0302870:CDS 40.0%
! TGTGACAATATCTCGACTTG+TGG - chr2_3:59840402-59840421 None:intergenic 40.0%
CAAGTCGAGATATTGTCACA+TGG + chr2_3:59840402-59840421 Msa0302870:CDS 40.0%
!!! TCTGCGTTTTTGAGTCATTG+TGG + chr2_3:59840432-59840451 Msa0302870:CDS 40.0%
!!! CGTTTTTGAGTCATTGTGGT+TGG + chr2_3:59840436-59840455 Msa0302870:CDS 40.0%
GTGTTGGAATCATTGAGTCA+TGG + chr2_3:59840465-59840484 Msa0302870:CDS 40.0%
AGTCATGGTGTACCTATTCT+TGG + chr2_3:59840480-59840499 Msa0302870:CDS 40.0%
GTCATGGTGTACCTATTCTT+GGG + chr2_3:59840481-59840500 Msa0302870:CDS 40.0%
AAGCTGTTGGAAGAAGAGAT+TGG + chr2_3:59840537-59840556 Msa0302870:CDS 40.0%
! AGAGATTGGTGTTTGTGTTG+AGG + chr2_3:59840551-59840570 Msa0302870:CDS 40.0%
TTTGTGTTGAGGTTGCTAGA+GGG + chr2_3:59840562-59840581 Msa0302870:CDS 40.0%
ATAAGGGATGCTGTGAAAGA+TGG + chr2_3:59840690-59840709 Msa0302870:CDS 40.0%
GAGTTAAAGGGTCATCTGTT+AGG + chr2_3:59840724-59840743 Msa0302870:CDS 40.0%
GTTAAAGGGTCATCTGTTAG+GGG + chr2_3:59840726-59840745 Msa0302870:CDS 40.0%
!! GTTGTGTGGTGTGTTGATTA+TGG - chr2_3:59839461-59839480 None:intergenic 40.0%
!!! GGAGAGAGGTTTTGAGTTTT+TGG - chr2_3:59839486-59839505 None:intergenic 40.0%
GATTGATGGAGGAATTTGGT+GGG - chr2_3:59839507-59839526 None:intergenic 40.0%
AGATTGATGGAGGAATTTGG+TGG - chr2_3:59839508-59839527 None:intergenic 40.0%
AGGAGATTGATGGAGGAATT+TGG - chr2_3:59839511-59839530 None:intergenic 40.0%
AAGAGATGAAAGGGATTGTG+AGG - chr2_3:59839531-59839550 None:intergenic 40.0%
TATGGTCGGAAGAGATGAAA+GGG - chr2_3:59839540-59839559 None:intergenic 40.0%
TTATGGTCGGAAGAGATGAA+AGG - chr2_3:59839541-59839560 None:intergenic 40.0%
! CAGTGTTTTCTGTGTTAGGT+GGG - chr2_3:59839567-59839586 None:intergenic 40.0%
! TCAGTGTTTTCTGTGTTAGG+TGG - chr2_3:59839568-59839587 None:intergenic 40.0%
! GTGTCAGTGTTTTCTGTGTT+AGG - chr2_3:59839571-59839590 None:intergenic 40.0%
!!! GTTGTTTTTAGTGGTGCTAG+TGG + chr2_3:59839766-59839785 Msa0302870:CDS 40.0%
! TTTAGTGGTGCTAGTGGTTA+TGG + chr2_3:59839772-59839791 Msa0302870:CDS 40.0%
TCTGAGTCTGTGAATCTATG+AGG - chr2_3:59839832-59839851 None:intergenic 40.0%
CTTTGAATCAAACGAGCTTC+TGG - chr2_3:59839877-59839896 None:intergenic 40.0%
ACCCTAAAGCTTGCAAAGAA+TGG + chr2_3:59840130-59840149 Msa0302870:CDS 40.0%
GCCATTCTTTGCAAGCTTTA+GGG - chr2_3:59840134-59840153 None:intergenic 40.0%
AGCCATTCTTTGCAAGCTTT+AGG - chr2_3:59840135-59840154 None:intergenic 40.0%
GCTACACAAATGATGCAACT+TGG + chr2_3:59840216-59840235 Msa0302870:CDS 40.0%
GTGGTTACCATTAGGGTTTA+TGG + chr2_3:59840329-59840348 Msa0302870:CDS 40.0%
AGGGTTTATGGAGAAGATTG+TGG + chr2_3:59840341-59840360 Msa0302870:CDS 40.0%
AAGATTGTGGAGACAAAGAG+AGG + chr2_3:59840354-59840373 Msa0302870:CDS 40.0%
! TGTGACAATATCTCGACTTG+TGG - chr2_3:59840402-59840421 None:intergenic 40.0%
CAAGTCGAGATATTGTCACA+TGG + chr2_3:59840402-59840421 Msa0302870:CDS 40.0%
!!! TCTGCGTTTTTGAGTCATTG+TGG + chr2_3:59840432-59840451 Msa0302870:CDS 40.0%
!!! CGTTTTTGAGTCATTGTGGT+TGG + chr2_3:59840436-59840455 Msa0302870:CDS 40.0%
GTGTTGGAATCATTGAGTCA+TGG + chr2_3:59840465-59840484 Msa0302870:CDS 40.0%
AGTCATGGTGTACCTATTCT+TGG + chr2_3:59840480-59840499 Msa0302870:CDS 40.0%
GTCATGGTGTACCTATTCTT+GGG + chr2_3:59840481-59840500 Msa0302870:CDS 40.0%
AAGCTGTTGGAAGAAGAGAT+TGG + chr2_3:59840537-59840556 Msa0302870:CDS 40.0%
! AGAGATTGGTGTTTGTGTTG+AGG + chr2_3:59840551-59840570 Msa0302870:CDS 40.0%
TTTGTGTTGAGGTTGCTAGA+GGG + chr2_3:59840562-59840581 Msa0302870:CDS 40.0%
ATAAGGGATGCTGTGAAAGA+TGG + chr2_3:59840690-59840709 Msa0302870:CDS 40.0%
GAGTTAAAGGGTCATCTGTT+AGG + chr2_3:59840724-59840743 Msa0302870:CDS 40.0%
GTTAAAGGGTCATCTGTTAG+GGG + chr2_3:59840726-59840745 Msa0302870:CDS 40.0%
CTTGTGCCATGAATGGGAAT+AGG - chr2_3:59839372-59839391 None:intergenic 45.0%
CTATTCCCATTCATGGCACA+AGG + chr2_3:59839370-59839389 Msa0302870:CDS 45.0%
TGTGACCTTGTGCCATGAAT+GGG - chr2_3:59839378-59839397 None:intergenic 45.0%
ATGTGACCTTGTGCCATGAA+TGG - chr2_3:59839379-59839398 None:intergenic 45.0%
GATTGTGAGGAGATTGATGG+AGG - chr2_3:59839518-59839537 None:intergenic 45.0%
AGGGATTGTGAGGAGATTGA+TGG - chr2_3:59839521-59839540 None:intergenic 45.0%
GTTAGGTGGGAGATTATGGT+CGG - chr2_3:59839554-59839573 None:intergenic 45.0%
CTGTGTTAGGTGGGAGATTA+TGG - chr2_3:59839558-59839577 None:intergenic 45.0%
TCAACCGTCGCTAAAGAACT+CGG + chr2_3:59839733-59839752 Msa0302870:CDS 45.0%
AACACCGAGTTCTTTAGCGA+CGG - chr2_3:59839740-59839759 None:intergenic 45.0%
TGTGATTGGGTCAACTCAGA+TGG + chr2_3:59839973-59839992 Msa0302870:CDS 45.0%
ACCTACTTTACCTCGTGAAC+CGG - chr2_3:59840103-59840122 None:intergenic 45.0%
GGAATCGCGTTGGAAAAAAG+TGG + chr2_3:59840237-59840256 Msa0302870:CDS 45.0%
TTGTGGTTGGAACTCAGTGT+TGG + chr2_3:59840449-59840468 Msa0302870:CDS 45.0%
ATGGTGTACCTATTCTTGGG+TGG + chr2_3:59840484-59840503 Msa0302870:CDS 45.0%
GTTTGTGTTGAGGTTGCTAG+AGG + chr2_3:59840561-59840580 Msa0302870:CDS 45.0%
GATGAGTTCTTATCAGCTGC+TGG + chr2_3:59840753-59840772 Msa0302870:CDS 45.0%
CTTGTGCCATGAATGGGAAT+AGG - chr2_3:59839372-59839391 None:intergenic 45.0%
CTATTCCCATTCATGGCACA+AGG + chr2_3:59839370-59839389 Msa0302870:CDS 45.0%
TGTGACCTTGTGCCATGAAT+GGG - chr2_3:59839378-59839397 None:intergenic 45.0%
ATGTGACCTTGTGCCATGAA+TGG - chr2_3:59839379-59839398 None:intergenic 45.0%
GATTGTGAGGAGATTGATGG+AGG - chr2_3:59839518-59839537 None:intergenic 45.0%
AGGGATTGTGAGGAGATTGA+TGG - chr2_3:59839521-59839540 None:intergenic 45.0%
GTTAGGTGGGAGATTATGGT+CGG - chr2_3:59839554-59839573 None:intergenic 45.0%
CTGTGTTAGGTGGGAGATTA+TGG - chr2_3:59839558-59839577 None:intergenic 45.0%
TCAACCGTCGCTAAAGAACT+CGG + chr2_3:59839733-59839752 Msa0302870:CDS 45.0%
AACACCGAGTTCTTTAGCGA+CGG - chr2_3:59839740-59839759 None:intergenic 45.0%
TGTGATTGGGTCAACTCAGA+TGG + chr2_3:59839973-59839992 Msa0302870:CDS 45.0%
ACCTACTTTACCTCGTGAAC+CGG - chr2_3:59840103-59840122 None:intergenic 45.0%
GGAATCGCGTTGGAAAAAAG+TGG + chr2_3:59840237-59840256 Msa0302870:CDS 45.0%
TTGTGGTTGGAACTCAGTGT+TGG + chr2_3:59840449-59840468 Msa0302870:CDS 45.0%
ATGGTGTACCTATTCTTGGG+TGG + chr2_3:59840484-59840503 Msa0302870:CDS 45.0%
GTTTGTGTTGAGGTTGCTAG+AGG + chr2_3:59840561-59840580 Msa0302870:CDS 45.0%
GATGAGTTCTTATCAGCTGC+TGG + chr2_3:59840753-59840772 Msa0302870:CDS 45.0%
TTGGGCTCAACTACTTCACC+AGG + chr2_3:59840031-59840050 Msa0302870:CDS 50.0%
!! TCCGGTTTGGTCTATTGGAC+CGG + chr2_3:59840065-59840084 Msa0302870:CDS 50.0%
ACCGGTCCAATAGACCAAAC+CGG - chr2_3:59840069-59840088 None:intergenic 50.0%
GAACCGGTTGAGAGAACAAC+CGG - chr2_3:59840087-59840106 None:intergenic 50.0%
! ACCGGTTCACGAGGTAAAGT+AGG + chr2_3:59840099-59840118 Msa0302870:CDS 50.0%
GGTTCACGAGGTAAAGTAGG+TGG + chr2_3:59840102-59840121 Msa0302870:CDS 50.0%
GATGCAACTTGGAATCGCGT+TGG + chr2_3:59840227-59840246 Msa0302870:CDS 50.0%
TGCTAGAGGGAAGAGTTGTG+AGG + chr2_3:59840575-59840594 Msa0302870:CDS 50.0%
!! AGTTGGTAATGGGGGAGAGT+GGG + chr2_3:59840628-59840647 Msa0302870:CDS 50.0%
TTGGGCTCAACTACTTCACC+AGG + chr2_3:59840031-59840050 Msa0302870:CDS 50.0%
!! TCCGGTTTGGTCTATTGGAC+CGG + chr2_3:59840065-59840084 Msa0302870:CDS 50.0%
ACCGGTCCAATAGACCAAAC+CGG - chr2_3:59840069-59840088 None:intergenic 50.0%
GAACCGGTTGAGAGAACAAC+CGG - chr2_3:59840087-59840106 None:intergenic 50.0%
! ACCGGTTCACGAGGTAAAGT+AGG + chr2_3:59840099-59840118 Msa0302870:CDS 50.0%
GGTTCACGAGGTAAAGTAGG+TGG + chr2_3:59840102-59840121 Msa0302870:CDS 50.0%
GATGCAACTTGGAATCGCGT+TGG + chr2_3:59840227-59840246 Msa0302870:CDS 50.0%
TGCTAGAGGGAAGAGTTGTG+AGG + chr2_3:59840575-59840594 Msa0302870:CDS 50.0%
!! AGTTGGTAATGGGGGAGAGT+GGG + chr2_3:59840628-59840647 Msa0302870:CDS 50.0%
! GGAGGAATTTGGTGGGAGAG+AGG - chr2_3:59839500-59839519 None:intergenic 55.0%
GGACCGGTTGTTCTCTCAAC+CGG + chr2_3:59840081-59840100 Msa0302870:CDS 55.0%
! GTTCTCTCAACCGGTTCACG+AGG + chr2_3:59840090-59840109 Msa0302870:CDS 55.0%
TGGGTAGTGAGGCCACCAAT+AGG + chr2_3:59840273-59840292 Msa0302870:CDS 55.0%
ACCTATTCTTGGGTGGCCGA+TGG + chr2_3:59840491-59840510 Msa0302870:CDS 55.0%
TATTCTTGGGTGGCCGATGG+CGG + chr2_3:59840494-59840513 Msa0302870:CDS 55.0%
AAAAACTGCTCCGCCGCCAT+CGG - chr2_3:59840510-59840529 None:intergenic 55.0%
!! GAGTTGGTAATGGGGGAGAG+TGG + chr2_3:59840627-59840646 Msa0302870:CDS 55.0%
!! GTTGGTAATGGGGGAGAGTG+GGG + chr2_3:59840629-59840648 Msa0302870:CDS 55.0%
! GGAGGAATTTGGTGGGAGAG+AGG - chr2_3:59839500-59839519 None:intergenic 55.0%
GGACCGGTTGTTCTCTCAAC+CGG + chr2_3:59840081-59840100 Msa0302870:CDS 55.0%
! GTTCTCTCAACCGGTTCACG+AGG + chr2_3:59840090-59840109 Msa0302870:CDS 55.0%
TGGGTAGTGAGGCCACCAAT+AGG + chr2_3:59840273-59840292 Msa0302870:CDS 55.0%
ACCTATTCTTGGGTGGCCGA+TGG + chr2_3:59840491-59840510 Msa0302870:CDS 55.0%
TATTCTTGGGTGGCCGATGG+CGG + chr2_3:59840494-59840513 Msa0302870:CDS 55.0%
AAAAACTGCTCCGCCGCCAT+CGG - chr2_3:59840510-59840529 None:intergenic 55.0%
!! GAGTTGGTAATGGGGGAGAG+TGG + chr2_3:59840627-59840646 Msa0302870:CDS 55.0%
!! GTTGGTAATGGGGGAGAGTG+GGG + chr2_3:59840629-59840648 Msa0302870:CDS 55.0%
GCCATCGGCCACCCAAGAAT+AGG - chr2_3:59840495-59840514 None:intergenic 60.0%
GCCATCGGCCACCCAAGAAT+AGG - chr2_3:59840495-59840514 None:intergenic 60.0%
! TCTTGGGTGGCCGATGGCGG+CGG + chr2_3:59840497-59840516 Msa0302870:CDS 70.0%
! TCTTGGGTGGCCGATGGCGG+CGG + chr2_3:59840497-59840516 Msa0302870:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 59839346 59840800 59839346 ID=Msa0302870;Name=Msa0302870
chr2_3 mRNA 59839346 59840800 59839346 ID=Msa0302870-mRNA-1;Parent=Msa0302870;Name=Msa0302870-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|484
chr2_3 exon 59839346 59840800 59839346 ID=Msa0302870-mRNA-1:exon:19455;Parent=Msa0302870-mRNA-1
chr2_3 CDS 59839346 59840800 59839346 ID=Msa0302870-mRNA-1:cds;Parent=Msa0302870-mRNA-1
Gene Sequence

>Msa0302870

ATGGCAGAGAAACAATCAATAATCCTATTCCCATTCATGGCACAAGGTCACATAATCCCATTCTTAGCTTTAGCCTTAAACCTAGAACAAAAATCCAAAAACTACAACATCACCATAATCAACACACCACACAACATCCAAAAACTCAAAACCTCTCTCCCACCAAATTCCTCCATCAATCTCCTCACAATCCCTTTCATCTCTTCCGACCATAATCTCCCACCTAACACAGAAAACACTGACACTGTCCCTTACAATCTTGTCATCAAACTCATCCAAGCTTCTCTTTCCTTAAAACCATCCTTCAAAAACATCATCCAAAACATCTTAACCCAACAACCTAACCATAAACTATGTATTGTTTCTGATATTTTCTTTGGTTGGACTTCAACCGTCGCTAAAGAACTCGGTGTTTTTCATGTTGTTTTTAGTGGTGCTAGTGGTTATGGTTTAGCTTGTTATTATTCTCTATGGATGAATCTTCCTCATAGATTCACAGACTCAGATGAATTTTCATTAAGTGATTTTCCAGAAGCTCGTTTGATTCAAAGAAATCAATTACCAAACAATATCTCACAAGCTGATGGATTTGATGATTGGTCGATTTTTCAAAGGAAGAATAATCTCTGTGATTGGGTCAACTCAGATGGCATTATTTTCAACTCAGTTTCAGATTTTGACTCTGTTGGGCTCAACTACTTCACCAGGAAATTCAATATTCCGGTTTGGTCTATTGGACCGGTTGTTCTCTCAACCGGTTCACGAGGTAAAGTAGGTGGAATAAACCCTAAAGCTTGCAAAGAATGGCTTGATACAAAGCCTGCAAATTCGGTATTATTCGTTTGTTTTGGATCGATGAACACGATTTCTGCTACACAAATGATGCAACTTGGAATCGCGTTGGAAAAAAGTGGCAAAAATTTCATCTGGGTAGTGAGGCCACCAATAGGTTTTGATATAAACTCAGAGTTTAAATATGAAGAGTGGTTACCATTAGGGTTTATGGAGAAGATTGTGGAGACAAAGAGAGGTATAATAGTAAATGATTGGGCACCACAAGTCGAGATATTGTCACATGGATCAGTTTCTGCGTTTTTGAGTCATTGTGGTTGGAACTCAGTGTTGGAATCATTGAGTCATGGTGTACCTATTCTTGGGTGGCCGATGGCGGCGGAGCAGTTTTTTAATTGTAAGCTGTTGGAAGAAGAGATTGGTGTTTGTGTTGAGGTTGCTAGAGGGAAGAGTTGTGAGGTGAAGTATGAAGATATTGTTGAGAAAATTGAGTTGGTAATGGGGGAGAGTGGGGTGAAGATTAGAGAGAATGCTTGTAAGATTAAGGATATGATAAGGGATGCTGTGAAAGATGGAAATGAAGATGGAGTTAAAGGGTCATCTGTTAGGGGTATTGATGAGTTCTTATCAGCTGCTGGAAAGAGCAATAAAACTACTGAATGA

Protein sequence

>Msa0302870

MAEKQSIILFPFMAQGHIIPFLALALNLEQKSKNYNITIINTPHNIQKLKTSLPPNSSINLLTIPFISSDHNLPPNTENTDTVPYNLVIKLIQASLSLKPSFKNIIQNILTQQPNHKLCIVSDIFFGWTSTVAKELGVFHVVFSGASGYGLACYYSLWMNLPHRFTDSDEFSLSDFPEARLIQRNQLPNNISQADGFDDWSIFQRKNNLCDWVNSDGIIFNSVSDFDSVGLNYFTRKFNIPVWSIGPVVLSTGSRGKVGGINPKACKEWLDTKPANSVLFVCFGSMNTISATQMMQLGIALEKSGKNFIWVVRPPIGFDINSEFKYEEWLPLGFMEKIVETKRGIIVNDWAPQVEILSHGSVSAFLSHCGWNSVLESLSHGVPILGWPMAAEQFFNCKLLEEEIGVCVEVARGKSCEVKYEDIVEKIELVMGESGVKIRENACKIKDMIRDAVKDGNEDGVKGSSVRGIDEFLSAAGKSNKTTE*