AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0540140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540140 MtrunA17_Chr4g0017921 98.870 354 3 1 1 353 1 354 0.0 735
Msa0540140 MtrunA17_Chr2g0309331 79.739 153 29 2 8 158 10 162 2.20e-88 269
Msa0540140 MtrunA17_Chr8g0346001 73.494 166 32 1 8 161 15 180 1.62e-87 270
Msa0540140 MtrunA17_Chr5g0405211 72.956 159 42 1 1 158 1 159 1.61e-84 259
Msa0540140 MtrunA17_Chr8g0372121 66.102 177 57 2 8 181 6 182 8.45e-81 249
Msa0540140 MtrunA17_Chr4g0056541 75.497 151 36 1 8 157 7 157 1.18e-80 250
Msa0540140 MtrunA17_Chr4g0018391 73.510 151 39 1 8 157 7 157 1.36e-80 249
Msa0540140 MtrunA17_Chr5g0398971 45.541 314 138 7 8 317 7 291 4.58e-78 243
Msa0540140 MtrunA17_Chr1g0200561 59.391 197 72 4 8 196 19 215 4.59e-75 235
Msa0540140 MtrunA17_Chr6g0481091 57.051 156 63 2 7 159 5 159 6.97e-60 192
Msa0540140 MtrunA17_Chr2g0316971 58.385 161 57 3 5 158 20 177 5.22e-59 195
Msa0540140 MtrunA17_Chr3g0091921 61.688 154 51 3 8 156 16 166 9.14e-59 192
Msa0540140 MtrunA17_Chr2g0309891 55.556 153 63 2 8 156 6 157 1.24e-58 193
Msa0540140 MtrunA17_Chr6g0484441 60.000 150 56 2 8 156 5 151 1.39e-58 192
Msa0540140 MtrunA17_Chr4g0060931 57.143 168 58 3 8 170 17 175 2.49e-58 192
Msa0540140 MtrunA17_Chr1g0147421 61.438 153 52 4 8 156 27 176 2.98e-58 192
Msa0540140 MtrunA17_Chr3g0139331 57.895 152 58 3 8 156 11 159 2.99e-57 189
Msa0540140 MtrunA17_Chr5g0433781 51.124 178 76 5 7 176 5 179 4.14e-57 196
Msa0540140 MtrunA17_Chr4g0042561 41.877 277 134 10 2 264 3 266 4.72e-56 184
Msa0540140 MtrunA17_Chr3g0109821 49.198 187 86 5 7 187 5 188 5.72e-56 193
Msa0540140 MtrunA17_Chr7g0253011 60.127 158 51 4 8 156 17 171 1.07e-55 186
Msa0540140 MtrunA17_Chr6g0453451 57.233 159 60 2 8 161 20 175 1.40e-55 184
Msa0540140 MtrunA17_Chr7g0252971 47.027 185 79 3 1 169 1 182 8.02e-55 183
Msa0540140 MtrunA17_Chr5g0417791 54.037 161 64 2 8 161 3 160 9.02e-55 180
Msa0540140 MtrunA17_Chr2g0318081 55.263 152 62 2 8 156 16 164 2.45e-54 182
Msa0540140 MtrunA17_Chr1g0183741 54.902 153 63 3 6 156 8 156 7.39e-54 178
Msa0540140 MtrunA17_Chr2g0318101 40.800 250 105 7 8 219 15 259 2.29e-53 179
Msa0540140 MtrunA17_Chr2g0312321 40.400 250 125 7 1 244 4 235 2.74e-53 178
Msa0540140 MtrunA17_Chr7g0217721 51.031 194 68 5 11 181 22 211 4.83e-53 178
Msa0540140 MtrunA17_Chr6g0461661 53.459 159 64 4 8 159 18 173 9.50e-53 178
Msa0540140 MtrunA17_Chr7g0261411 54.967 151 62 3 6 154 8 154 1.46e-52 175
Msa0540140 MtrunA17_Chr8g0359921 53.896 154 63 2 8 156 14 164 3.55e-52 176
Msa0540140 MtrunA17_Chr7g0214071 56.494 154 56 4 8 157 15 161 5.41e-52 173
Msa0540140 MtrunA17_Chr5g0400461 39.600 250 140 4 6 248 4 249 9.40e-52 174
Msa0540140 MtrunA17_Chr3g0124761 51.553 161 68 3 3 157 2 158 6.25e-51 171
Msa0540140 MtrunA17_Chr3g0130731 52.564 156 64 3 8 157 7 158 1.57e-50 170
Msa0540140 MtrunA17_Chr7g0217711 62.500 128 45 1 10 137 21 145 8.47e-50 164
Msa0540140 MtrunA17_Chr6g0453131 50.617 162 64 4 10 158 17 175 1.58e-49 170
Msa0540140 MtrunA17_Chr8g0361731 45.503 189 81 5 10 183 16 197 2.27e-49 170
Msa0540140 MtrunA17_Chr3g0144271 56.291 151 54 5 7 153 22 164 5.38e-49 170
Msa0540140 MtrunA17_Chr8g0384721 50.318 157 67 3 8 157 7 159 8.53e-49 166
Msa0540140 MtrunA17_Chr5g0417001 49.390 164 67 3 8 158 14 174 9.46e-49 168
Msa0540140 MtrunA17_Chr1g0197351 52.201 159 66 3 10 159 44 201 9.94e-49 170
Msa0540140 MtrunA17_Chr4g0047841 46.927 179 64 5 8 158 15 190 1.41e-48 167
Msa0540140 MtrunA17_Chr4g0054791 51.572 159 66 4 6 156 4 159 2.03e-48 166
Msa0540140 MtrunA17_Chr5g0428991 53.548 155 66 3 8 158 25 177 3.20e-48 172
Msa0540140 MtrunA17_Chr7g0263931 50.633 158 66 3 8 156 11 165 7.39e-48 164
Msa0540140 MtrunA17_Chr3g0130101 50.331 151 71 2 10 157 9 158 1.26e-47 164
Msa0540140 MtrunA17_Chr2g0326361 50.000 164 70 3 2 156 8 168 2.45e-47 163
Msa0540140 MtrunA17_Chr3g0128111 50.658 152 69 4 11 158 45 194 9.17e-47 159
Msa0540140 MtrunA17_Chr3g0128151 50.641 156 71 3 7 158 21 174 1.62e-46 166
Msa0540140 MtrunA17_Chr8g0364791 50.000 154 67 3 10 157 8 157 3.54e-46 163
Msa0540140 MtrunA17_Chr3g0092671 50.000 150 71 3 10 156 7 155 9.92e-46 163
Msa0540140 MtrunA17_Chr8g0384201 49.351 154 68 3 10 157 8 157 7.83e-45 160
Msa0540140 MtrunA17_Chr1g0197361 49.333 150 72 3 10 156 10 158 8.86e-45 162
Msa0540140 MtrunA17_Chr1g0201021 49.333 150 72 2 10 156 21 169 9.40e-45 161
Msa0540140 MtrunA17_Chr4g0076731 46.753 154 77 3 8 159 54 204 2.64e-44 157
Msa0540140 MtrunA17_Chr5g0442771 34.091 264 126 7 8 228 18 276 4.26e-43 151
Msa0540140 MtrunA17_Chr4g0038751 46.471 170 83 4 10 176 17 181 7.07e-43 150
Msa0540140 MtrunA17_Chr2g0311651 34.137 249 131 8 8 227 21 265 3.26e-40 144
Msa0540140 MtrunA17_Chr2g0311661 36.283 226 107 8 8 204 20 237 1.20e-39 142
Msa0540140 MtrunA17_Chr8g0385991 44.134 179 82 6 8 176 14 184 4.29e-39 138
Msa0540140 MtrunA17_Chr3g0131911 42.945 163 75 4 8 157 14 171 4.28e-36 131
Msa0540140 MtrunA17_Chr8g0345671 47.368 152 73 5 5 153 8 155 2.29e-35 133
Msa0540140 MtrunA17_Chr3g0113001 56.198 121 39 4 52 161 4 121 9.73e-35 129
Msa0540140 MtrunA17_Chr2g0321741 41.212 165 83 5 22 181 1 156 5.08e-34 128
Msa0540140 MtrunA17_Chr2g0321631 41.071 168 83 6 6 160 2 166 1.81e-32 121
Msa0540140 MtrunA17_Chr8g0345691 46.711 152 68 6 8 153 12 156 3.69e-32 124
Msa0540140 MtrunA17_Chr4g0026141 38.788 165 86 5 9 161 6 167 4.34e-30 115
Msa0540140 MtrunA17_Chr3g0113031 57.143 105 34 3 74 170 3 104 1.12e-29 114
Msa0540140 MtrunA17_Chr8g0345711 40.698 172 81 7 1 154 5 173 6.32e-29 110
Msa0540140 MtrunA17_Chr4g0050701 36.875 160 79 4 8 156 11 159 1.66e-28 109
Msa0540140 MtrunA17_Chr8g0345731 41.935 155 78 6 8 156 24 172 4.14e-25 100
Msa0540140 MtrunA17_Chr7g0266701 34.940 166 96 4 8 161 4 169 9.12e-25 101
Msa0540140 MtrunA17_Chr7g0243371 58.667 75 29 1 64 136 17 91 2.40e-24 96.3
Msa0540140 MtrunA17_Chr8g0384351 35.593 177 92 7 2 178 4 158 5.72e-24 97.4
Msa0540140 MtrunA17_Chr8g0345721 38.182 165 67 6 11 141 38 201 6.17e-24 97.8
Msa0540140 MtrunA17_Chr8g0345741 47.899 119 57 4 19 134 2 118 1.09e-23 95.5
Msa0540140 MtrunA17_Chr8g0345701 39.189 148 69 6 4 134 3 146 2.44e-21 89.7
Msa0540140 MtrunA17_Chr3g0130321 31.953 169 90 6 8 160 7 166 7.15e-18 81.3
Msa0540140 MtrunA17_Chr7g0251651 31.884 138 87 6 1 136 11 143 5.94e-12 63.9
Msa0540140 MtrunA17_Chr3g0113011 62.222 45 17 0 9 53 20 64 1.28e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540140 AT4G10350.1 59.840 376 89 13 2 352 3 341 6.15e-143 408
Msa0540140 AT1G33280.1 56.389 360 89 11 1 349 1 303 4.09e-127 367
Msa0540140 AT4G10350.2 54.769 325 85 13 53 352 7 294 2.93e-103 306
Msa0540140 AT1G79580.3 79.355 155 31 1 8 161 17 171 8.42e-89 271
Msa0540140 AT1G79580.5 79.355 155 31 1 8 161 17 171 8.42e-89 271
Msa0540140 AT1G79580.4 79.355 155 31 1 8 161 17 171 8.42e-89 271
Msa0540140 AT1G79580.2 79.355 155 31 1 8 161 17 171 8.42e-89 271
Msa0540140 AT1G79580.1 79.355 155 31 1 8 161 17 171 8.42e-89 271
Msa0540140 AT1G32770.1 73.810 168 31 2 8 162 16 183 2.20e-87 268
Msa0540140 AT2G46770.1 68.824 170 37 1 8 161 16 185 2.18e-84 260
Msa0540140 AT4G36160.1 76.159 151 35 1 8 157 10 160 1.82e-82 256
Msa0540140 AT4G36160.3 76.159 151 35 1 8 157 10 160 1.82e-82 256
Msa0540140 AT4G36160.2 75.658 152 36 1 7 157 13 164 1.98e-82 256
Msa0540140 AT2G18060.3 73.684 152 39 1 7 157 8 159 1.43e-81 253
Msa0540140 AT2G18060.1 73.684 152 39 1 7 157 8 159 1.43e-81 253
Msa0540140 AT1G12260.2 57.021 235 85 7 8 226 7 241 9.29e-81 250
Msa0540140 AT3G61910.1 67.647 170 39 2 8 161 11 180 1.89e-80 249
Msa0540140 AT1G12260.1 57.082 233 84 7 8 224 7 239 2.17e-79 248
Msa0540140 AT1G62700.1 52.713 258 88 7 8 237 7 258 1.64e-78 246
Msa0540140 AT1G62700.2 52.713 258 88 7 8 237 7 258 1.64e-78 246
Msa0540140 AT5G66300.1 70.130 154 44 2 7 158 11 164 5.62e-77 239
Msa0540140 AT5G62380.2 70.199 151 44 1 8 157 7 157 1.18e-75 237
Msa0540140 AT5G62380.1 70.199 151 44 1 8 157 7 157 1.18e-75 237
Msa0540140 AT1G71930.2 67.105 152 49 1 6 156 7 158 1.74e-74 233
Msa0540140 AT1G71930.1 67.105 152 49 1 6 156 7 158 1.74e-74 233
Msa0540140 AT3G18400.1 60.256 156 57 2 8 161 5 157 2.55e-62 202
Msa0540140 AT2G24430.2 60.377 159 56 3 7 161 15 170 1.10e-61 200
Msa0540140 AT2G24430.1 60.377 159 56 3 7 161 15 170 1.10e-61 200
Msa0540140 AT3G17730.1 58.333 156 61 3 7 159 5 159 1.13e-61 198
Msa0540140 AT5G07680.2 44.765 277 122 9 8 269 3 263 1.22e-61 200
Msa0540140 AT5G61430.1 43.972 282 122 10 8 269 16 281 1.85e-61 200
Msa0540140 AT5G07680.1 44.765 277 122 9 8 269 17 277 1.87e-61 200
Msa0540140 AT5G39610.1 54.255 188 70 5 8 188 20 198 9.24e-59 192
Msa0540140 AT3G15170.1 57.500 160 56 4 8 159 20 175 1.36e-56 187
Msa0540140 AT5G17260.1 57.143 154 61 3 7 156 5 157 3.21e-56 190
Msa0540140 AT1G54330.1 57.237 152 60 2 7 156 5 153 7.70e-56 184
Msa0540140 AT5G18270.2 58.599 157 56 4 8 158 21 174 1.11e-55 185
Msa0540140 AT1G76420.1 53.977 176 71 4 7 178 21 190 1.13e-55 185
Msa0540140 AT3G29035.1 59.868 152 53 2 8 154 24 172 1.55e-55 184
Msa0540140 AT1G65910.1 55.484 155 65 2 8 159 6 159 1.60e-55 192
Msa0540140 AT5G53950.1 56.098 164 62 3 8 164 17 177 1.93e-55 186
Msa0540140 AT5G18270.1 57.962 157 57 4 8 158 21 174 2.09e-55 184
Msa0540140 AT3G03200.1 57.143 154 61 3 7 156 5 157 3.38e-55 188
Msa0540140 AT1G69490.1 50.000 170 75 2 3 165 4 170 9.19e-55 181
Msa0540140 AT3G04060.1 59.615 156 52 5 8 156 20 171 4.82e-54 181
Msa0540140 AT3G10480.1 53.704 162 70 2 2 159 21 181 2.54e-53 182
Msa0540140 AT3G04070.2 50.000 166 65 3 6 156 8 170 6.15e-53 178
Msa0540140 AT3G10480.2 54.037 161 70 2 2 159 21 180 6.84e-53 181
Msa0540140 AT4G27410.2 52.597 154 67 2 8 158 14 164 9.17e-53 176
Msa0540140 AT3G10490.1 52.469 162 72 2 2 159 21 181 1.09e-52 174
Msa0540140 AT3G12977.1 37.329 292 148 10 1 287 11 272 1.14e-52 176
Msa0540140 AT3G15500.1 52.288 153 67 2 8 157 14 163 5.47e-52 175
Msa0540140 AT3G10490.2 52.469 162 72 2 2 159 21 181 2.08e-51 177
Msa0540140 AT5G04410.1 53.947 152 66 2 8 156 9 159 2.63e-51 179
Msa0540140 AT1G61110.1 51.515 165 61 3 8 156 16 177 2.87e-51 173
Msa0540140 AT1G52890.1 51.948 154 68 2 8 158 14 164 3.92e-51 173
Msa0540140 AT3G10500.1 54.605 152 65 3 8 156 9 159 7.16e-51 178
Msa0540140 AT1G56010.2 49.693 163 72 3 1 156 12 171 3.26e-50 171
Msa0540140 AT3G04070.1 45.604 182 65 3 6 156 8 186 4.85e-50 171
Msa0540140 AT5G63790.2 52.532 158 63 4 8 157 60 213 5.80e-50 170
Msa0540140 AT1G77450.1 48.795 166 75 3 2 161 4 165 5.92e-50 168
Msa0540140 AT5G63790.1 52.532 158 63 4 8 157 50 203 6.21e-50 169
Msa0540140 AT1G01720.1 50.955 157 66 3 8 157 7 159 8.15e-50 169
Msa0540140 AT4G27410.3 48.810 168 69 4 8 158 14 181 4.63e-49 167
Msa0540140 AT5G08790.1 51.899 158 64 4 8 157 7 160 9.31e-49 166
Msa0540140 AT3G10480.3 45.361 194 70 2 2 159 21 214 1.15e-48 171
Msa0540140 AT5G24590.2 50.000 166 78 3 4 165 9 173 1.71e-48 169
Msa0540140 AT4G28530.1 50.595 168 59 5 8 156 10 172 3.83e-48 166
Msa0540140 AT3G15510.1 41.667 216 101 5 12 210 21 228 5.05e-48 166
Msa0540140 AT5G46590.1 50.955 157 71 3 8 159 6 161 5.43e-48 164
Msa0540140 AT4G17980.1 49.686 159 72 3 5 156 3 160 1.17e-47 162
Msa0540140 AT1G33060.1 51.299 154 69 3 7 156 23 174 1.33e-47 171
Msa0540140 AT1G33060.2 51.299 154 69 3 7 156 23 174 1.48e-47 171
Msa0540140 AT2G33480.2 51.656 151 66 2 8 157 15 159 1.52e-47 162
Msa0540140 AT4G35580.1 51.634 153 68 3 8 156 9 159 3.01e-47 167
Msa0540140 AT4G35580.3 51.634 153 68 3 8 156 9 159 3.47e-47 167
Msa0540140 AT4G35580.2 51.634 153 68 3 8 156 9 159 3.56e-47 167
Msa0540140 AT4G17980.2 50.641 156 69 3 8 156 6 160 3.76e-47 162
Msa0540140 AT5G39820.1 44.944 178 67 4 8 158 20 193 4.04e-47 163
Msa0540140 AT1G26870.1 37.050 278 138 8 10 267 18 278 7.96e-47 164
Msa0540140 AT5G46590.2 55.970 134 57 2 8 140 6 138 1.14e-46 160
Msa0540140 AT2G33480.1 50.327 153 67 2 8 157 15 161 1.20e-46 160
Msa0540140 AT3G49530.2 45.810 179 92 4 4 178 9 186 2.60e-46 162
Msa0540140 AT3G49530.1 45.810 179 92 4 4 178 9 186 5.63e-46 163
Msa0540140 AT2G27300.1 39.303 201 112 4 1 201 7 197 1.41e-45 159
Msa0540140 AT5G13180.1 50.000 156 64 4 8 157 14 161 5.46e-45 155
Msa0540140 AT5G64060.1 47.097 155 78 2 8 159 6 159 2.41e-44 156
Msa0540140 AT2G02450.1 47.682 151 74 3 8 156 51 198 3.03e-44 156
Msa0540140 AT2G02450.2 47.682 151 74 3 8 156 51 198 3.91e-44 157
Msa0540140 AT2G43000.1 46.358 151 74 3 10 156 20 167 1.12e-43 152
Msa0540140 AT1G52880.1 50.307 163 61 4 12 158 21 179 1.88e-43 153
Msa0540140 AT1G32510.1 42.347 196 98 5 8 190 6 199 1.06e-42 150
Msa0540140 AT1G34190.1 44.667 150 79 2 10 156 18 166 5.21e-42 154
Msa0540140 AT1G34180.3 43.333 150 81 2 10 156 18 166 3.55e-41 150
Msa0540140 AT2G17040.1 40.625 192 103 5 10 195 8 194 4.19e-41 145
Msa0540140 AT1G34180.1 43.333 150 81 2 10 156 18 166 1.11e-40 150
Msa0540140 AT5G22290.1 45.333 150 77 2 8 157 21 165 1.25e-40 146
Msa0540140 AT5G09330.5 47.368 152 72 3 10 156 8 156 1.30e-40 149
Msa0540140 AT5G09330.2 47.368 152 72 3 10 156 8 156 1.30e-40 149
Msa0540140 AT5G09330.4 47.368 152 72 3 10 156 8 156 1.30e-40 149
Msa0540140 AT5G09330.3 47.368 152 72 3 10 156 8 156 1.30e-40 149
Msa0540140 AT5G09330.1 47.368 152 72 3 10 156 8 156 1.30e-40 149
Msa0540140 AT1G34180.4 40.994 161 81 3 10 156 18 178 5.73e-40 147
Msa0540140 AT3G44290.2 41.566 166 85 4 10 175 16 169 9.77e-40 140
Msa0540140 AT1G34180.2 40.994 161 81 3 10 156 18 178 1.64e-39 147
Msa0540140 AT5G61430.2 40.708 226 101 9 64 269 6 218 1.90e-39 141
Msa0540140 AT3G44290.1 41.566 166 85 4 10 175 16 169 7.51e-39 141
Msa0540140 AT1G32870.2 46.626 163 75 4 1 156 3 160 2.82e-38 143
Msa0540140 AT1G32870.1 46.626 163 75 4 1 156 3 160 2.97e-38 143
Msa0540140 AT1G32870.3 46.626 163 75 4 1 156 39 196 5.17e-38 143
Msa0540140 AT5G04395.1 43.275 171 79 4 2 159 22 187 7.32e-38 134
Msa0540140 AT3G12910.1 43.713 167 70 5 10 156 23 185 3.11e-37 136
Msa0540140 AT1G56010.1 58.763 97 34 1 66 156 8 104 5.20e-35 129
Msa0540140 AT3G12977.2 54.630 108 42 3 53 156 10 114 1.60e-34 127
Msa0540140 AT2G18060.2 74.286 70 17 1 89 157 2 71 6.44e-30 116
Msa0540140 AT2G33480.3 50.000 102 48 1 59 157 3 104 4.34e-28 109
Msa0540140 AT1G02230.1 39.196 199 98 8 9 193 4 193 1.60e-26 108
Msa0540140 AT4G01550.1 36.158 177 104 5 11 183 7 178 5.13e-26 108
Msa0540140 AT4G01520.1 37.654 162 93 5 9 165 5 163 6.62e-26 105
Msa0540140 AT4G01540.4 38.125 160 91 5 11 165 7 163 1.16e-24 103
Msa0540140 AT4G01540.3 38.125 160 91 5 11 165 7 163 1.39e-24 103
Msa0540140 AT4G01540.2 38.125 160 91 5 11 165 7 163 1.84e-24 103
Msa0540140 AT4G28530.2 36.145 166 49 5 8 156 10 135 2.07e-24 102
Msa0540140 AT4G01540.1 38.125 160 91 5 11 165 7 163 2.29e-24 103
Msa0540140 AT5G64530.1 36.310 168 73 6 8 156 3 155 3.54e-24 98.2
Msa0540140 AT5G64530.2 42.105 133 60 5 8 138 3 120 1.13e-23 95.9
Msa0540140 AT1G02250.1 34.762 210 120 11 9 210 4 204 7.87e-23 98.2
Msa0540140 AT3G10490.4 53.750 80 33 1 84 159 2 81 2.35e-22 97.1
Msa0540140 AT3G10490.3 53.750 80 33 1 84 159 2 81 2.35e-22 97.1
Msa0540140 AT3G04420.2 36.025 161 88 5 9 162 4 156 5.68e-22 94.7
Msa0540140 AT3G04420.1 36.025 161 88 5 9 162 4 156 8.07e-22 95.1
Msa0540140 AT5G22380.1 35.897 156 91 4 8 154 5 160 8.62e-22 93.2
Msa0540140 AT3G44350.2 33.974 156 90 5 11 156 8 160 1.16e-21 92.8
Msa0540140 AT3G44350.1 38.931 131 71 5 11 135 8 135 9.08e-21 88.2
Msa0540140 AT1G01010.1 34.641 153 85 6 11 153 6 153 3.83e-19 88.6
Msa0540140 AT2G43000.2 44.318 88 45 2 73 156 2 89 1.84e-18 82.8
Msa0540140 AT1G02220.1 38.519 135 65 5 8 134 3 127 3.27e-18 85.5
Msa0540140 AT5G50820.1 36.552 145 67 6 1 136 10 138 5.33e-18 81.6
Msa0540140 AT3G56530.1 29.487 156 105 3 2 154 46 199 3.16e-16 79.0
Msa0540140 AT5G22290.2 47.059 68 33 1 90 157 2 66 3.94e-15 74.7
Msa0540140 AT3G55210.1 28.834 163 94 5 8 154 11 167 4.06e-15 75.1
Msa0540140 AT5G14000.1 30.573 157 100 3 5 157 10 161 5.70e-15 73.2
Msa0540140 AT5G14000.2 32.353 136 83 3 5 136 10 140 1.07e-13 68.6
Msa0540140 AT3G04430.1 35.075 134 70 6 14 134 6 135 3.20e-11 62.4

Find 90 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAATACTTACAAGAAAAT+TGG 0.239923 4_1:+21738595 Msa0540140:CDS
ATAAGTTGTTTCACTATAAT+AGG 0.269347 4_1:-21739648 None:intergenic
GAGCAACAAATGCAGGGTTT+TGG 0.295401 4_1:+21738545 Msa0540140:CDS
AGGTATCAAGTTTCAGAATC+TGG 0.305736 4_1:+21739711 Msa0540140:CDS
TTCTAATGGCGGTGTGCCAC+CGG 0.345325 4_1:+21736863 Msa0540140:CDS
AAGATGGATGGGTGGTATGC+AGG 0.347766 4_1:+21739310 Msa0540140:CDS
CTTCACTCCCAATCTTGAAT+AGG 0.355765 4_1:-21739350 None:intergenic
TTGTGAACCACCTCAAGAAA+TGG 0.360627 4_1:+21739749 Msa0540140:CDS
TGAAAGCTGATTGATTTGAT+TGG 0.364349 4_1:-21739874 None:intergenic
CAGGAAGAGACAAGTGCATT+AGG 0.383725 4_1:+21738575 Msa0540140:CDS
TATTAGTCCTTGACCCTGTT+GGG 0.386089 4_1:-21738522 None:intergenic
GTTGAGGCTGGGGTTGGGAG+TGG 0.389288 4_1:-21739572 None:intergenic
TAGAGGTTGAGGCTGGGGTT+GGG 0.397901 4_1:-21739577 None:intergenic
GTAGAGGTTGAGGCTGGGGT+TGG 0.413911 4_1:-21739578 None:intergenic
CTATTAGTCCTTGACCCTGT+TGG 0.415287 4_1:-21738523 None:intergenic
CTCATGGACAAAAGACTGAT+TGG 0.417162 4_1:+21738656 Msa0540140:CDS
GCCTGTAGAGGTTGAGGCTG+GGG 0.418162 4_1:-21739582 None:intergenic
TCTAATGGCGGTGTGCCACC+GGG 0.432129 4_1:+21736864 Msa0540140:CDS
GAAAGCTGATTGATTTGATT+GGG 0.434532 4_1:-21739873 None:intergenic
ACTAATAGAGCAACAAATGC+AGG 0.444998 4_1:+21738538 Msa0540140:CDS
AAGGACAGAAAGTACCCAAC+AGG 0.454734 4_1:+21738508 Msa0540140:CDS
GAGGAAATATTGTTCATTTG+TGG 0.454849 4_1:-21739396 None:intergenic
TAGAGTATGAGTTCTTCTAA+TGG 0.457341 4_1:+21736849 None:intergenic
TCAGAATCTGGCATTGAAGT+TGG 0.458946 4_1:+21739723 Msa0540140:CDS
ATGAATGGGGAATGCTTGAT+AGG 0.460214 4_1:+21739799 Msa0540140:CDS
CTTGAACAAGATGGAACCTT+GGG 0.472651 4_1:+21736986 Msa0540140:CDS
ACCCCAGCCTCAACCTCTAC+AGG 0.478031 4_1:+21739581 Msa0540140:CDS
AGATGGATGGGTGGTATGCA+GGG 0.480498 4_1:+21739311 Msa0540140:CDS
TAGCCTGTAGAGGTTGAGGC+TGG 0.482716 4_1:-21739584 None:intergenic
GTGGTGAAGGAATGAATGAA+TGG 0.483190 4_1:+21739784 Msa0540140:CDS
AGCCTGTAGAGGTTGAGGCT+GGG 0.491178 4_1:-21739583 None:intergenic
TGTGAACCACCTCAAGAAAT+GGG 0.493376 4_1:+21739750 Msa0540140:CDS
AATCAATCAGCTTTCATTGA+GGG 0.497186 4_1:+21739881 Msa0540140:CDS
TGGTGAAGGAATGAATGAAT+GGG 0.502961 4_1:+21739785 Msa0540140:CDS
CATGAATACCGTCTTGAAGA+TGG 0.503674 4_1:+21738685 Msa0540140:CDS
GAAATGTATTTGTAGGAAGA+TGG 0.506020 4_1:+21739294 Msa0540140:intron
GCTTTCATTGAGGGGAGAGA+TGG 0.506539 4_1:+21739890 Msa0540140:CDS
TTTCGAGCTCGAAACCGGAT+AGG 0.515112 4_1:-21739494 None:intergenic
CCTACACCCATTTCTTGAGG+TGG 0.516209 4_1:-21739756 None:intergenic
CTTCCTACACCCATTTCTTG+AGG 0.516910 4_1:-21739759 None:intergenic
AAAAGAGGCTACAAGGTTTG+AGG 0.524109 4_1:+21739842 Msa0540140:CDS
TTGTGGATCTTGATTGTGTG+TGG 0.525676 4_1:-21739379 None:intergenic
CGAAACCGGATAGGTTCCTA+TGG 0.529928 4_1:-21739485 None:intergenic
AAGTTAGCCTGTAGAGGTTG+AGG 0.533705 4_1:-21739588 None:intergenic
GAAGGACCGTTGATTTGTTG+AGG 0.537902 4_1:-21739415 None:intergenic
AAATCAATCAGCTTTCATTG+AGG 0.543711 4_1:+21739880 Msa0540140:CDS
CTACCACTCTCACAATCTCT+AGG 0.544505 4_1:-21739678 None:intergenic
AAAGAGATGCATACATTGGT+AGG 0.547128 4_1:-21738715 None:intergenic
ATAGGTTGTTCTGTCTGTAA+AGG 0.547458 4_1:-21739630 None:intergenic
GAATGATGACTCCACAAAAG+AGG 0.551407 4_1:+21739827 Msa0540140:CDS
TTCAAGATTGGGAGTGAAGG+TGG 0.552771 4_1:+21739354 Msa0540140:CDS
TTGATAATGGAGACTAAGCT+CGG 0.553649 4_1:-21739520 None:intergenic
TGTATTTGTAGGAAGATGGA+TGG 0.554275 4_1:+21739298 Msa0540140:intron
ACTCCACAAAAGAGGCTACA+AGG 0.557185 4_1:+21739835 Msa0540140:CDS
ATCAATCAGCTTTCATTGAG+GGG 0.560562 4_1:+21739882 Msa0540140:CDS
GGTGTAGGAAGGAGTGGTGA+AGG 0.561219 4_1:+21739771 Msa0540140:CDS
AACCACCATAGGAACCTATC+CGG 0.566236 4_1:+21739480 Msa0540140:CDS
TGATATGGATGTTATAAGAG+AGG 0.567950 4_1:+21736959 Msa0540140:CDS
CTCAAGAAATGGGTGTAGGA+AGG 0.571055 4_1:+21739760 Msa0540140:CDS
GAAATGGGTGTAGGAAGGAG+TGG 0.573489 4_1:+21739765 Msa0540140:CDS
TGAAGTAACTCTTCATCAGT+CGG 0.581155 4_1:-21736900 None:intergenic
AGAGGTGGACTTGAACAAGA+TGG 0.584582 4_1:+21736977 Msa0540140:CDS
AATCCTAGAGATTGTGAGAG+TGG 0.585606 4_1:+21739675 Msa0540140:CDS
GATTGTGAGAGTGGTAGTGA+TGG 0.586886 4_1:+21739684 Msa0540140:CDS
TACAAAGGCAGAGCTCCTCA+TGG 0.591624 4_1:+21738640 Msa0540140:CDS
ACTTGAACAAGATGGAACCT+TGG 0.595484 4_1:+21736985 Msa0540140:CDS
CTATTCAAGATTGGGAGTGA+AGG 0.598153 4_1:+21739351 Msa0540140:CDS
AACAACATCAAAACCACCAT+AGG 0.601748 4_1:+21739469 Msa0540140:CDS
TAATCAAAGTTAGCCTGTAG+AGG 0.606992 4_1:-21739594 None:intergenic
AAGACTCTTGTGTTCTACAA+AGG 0.611421 4_1:+21738625 Msa0540140:CDS
ATGGAACCTTGGGACTTGCA+AGG 0.612104 4_1:+21736996 Msa0540140:CDS
GAAAGTACCCAACAGGGTCA+AGG 0.612193 4_1:+21738515 Msa0540140:CDS
TGATAATGGAGACTAAGCTC+GGG 0.612739 4_1:-21739519 None:intergenic
CCACCTCAAGAAATGGGTGT+AGG 0.613141 4_1:+21739756 Msa0540140:CDS
TATGGATGTTATAAGAGAGG+TGG 0.621522 4_1:+21736962 Msa0540140:CDS
CTAATAGAGCAACAAATGCA+GGG 0.623645 4_1:+21738539 Msa0540140:CDS
AGAGTGGTAGTGATGGTTTG+AGG 0.624748 4_1:+21739691 Msa0540140:CDS
AACCGGATAGGTTCCTATGG+TGG 0.626386 4_1:-21739482 None:intergenic
GTCGGATGAAATCGAAACCC+CGG 0.631890 4_1:-21736882 None:intergenic
GTATTTGTAGGAAGATGGAT+GGG 0.647842 4_1:+21739299 Msa0540140:intron
GATCATTGCCATCTTCAAGA+CGG 0.649154 4_1:-21738693 None:intergenic
ATATTTCCTCAACAAATCAA+CGG 0.660597 4_1:+21739409 Msa0540140:CDS
GTGGTATTTCTTCAGTCACA+AGG 0.667084 4_1:+21738489 Msa0540140:CDS
AGTATGAGTTCTTCTAATGG+CGG 0.674587 4_1:+21736852 None:intergenic
CTAATGGCGGTGTGCCACCG+GGG 0.679366 4_1:+21736865 Msa0540140:CDS
TTTGTAGGAAGATGGATGGG+TGG 0.681897 4_1:+21739302 Msa0540140:intron
GGTGAAGGAATGAATGAATG+GGG 0.696621 4_1:+21739786 Msa0540140:CDS
GATCGACACCACAAAACGAG+TGG 0.701290 4_1:+21738470 Msa0540140:CDS
AGGACAGAAAGTACCCAACA+GGG 0.718761 4_1:+21738509 Msa0540140:CDS
GGATGAAATCGAAACCCCGG+TGG 0.755662 4_1:-21736879 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAAACATGAA+AGG - chr4_1:21737315-21737334 None:intergenic 10.0%
!!! TTTTTTTCTTTATTTTGAAT+GGG - chr4_1:21738282-21738301 None:intergenic 10.0%
!!! TCATGTTTTTTTTTTTTTAG+TGG + chr4_1:21737316-21737335 Msa0540140:intron 15.0%
!!! GTTTTTTTCTTTATTTTGAA+TGG - chr4_1:21738283-21738302 None:intergenic 15.0%
!!! CTAATTTTTGCTTATATTTT+TGG - chr4_1:21738769-21738788 None:intergenic 15.0%
!!! ACTCATTTTTGTTTATATTT+TGG + chr4_1:21738847-21738866 Msa0540140:intron 15.0%
!!! CTCATTTTTGTTTATATTTT+GGG + chr4_1:21738848-21738867 Msa0540140:intron 15.0%
!! TCATTACTATTTGAAAAAGA+AGG + chr4_1:21736920-21736939 Msa0540140:CDS 20.0%
!!! ATCCATATCAAATTTTTGAA+AGG - chr4_1:21736949-21736968 None:intergenic 20.0%
!!! TCTTATTTAACTTTAGTGTT+TGG + chr4_1:21737033-21737052 Msa0540140:intron 20.0%
!! AGTTACACATGTATATAAAA+TGG + chr4_1:21737132-21737151 Msa0540140:intron 20.0%
!! CAGATAAACACAATAATATA+TGG - chr4_1:21737204-21737223 None:intergenic 20.0%
!! TATCTGAATCCAAATTTAAT+TGG + chr4_1:21737218-21737237 Msa0540140:intron 20.0%
!!! TTTTCTTTTTTGACAAAGTT+TGG - chr4_1:21737616-21737635 None:intergenic 20.0%
!! TTAAACTAATGTAATCGATT+TGG - chr4_1:21737734-21737753 None:intergenic 20.0%
!! TCACATTAGATAAAACATTT+AGG - chr4_1:21737923-21737942 None:intergenic 20.0%
!!! TTTTATCTAATGTGAACAAA+AGG + chr4_1:21737928-21737947 Msa0540140:intron 20.0%
!! TTTATCTAATGTGAACAAAA+GGG + chr4_1:21737929-21737948 Msa0540140:intron 20.0%
!! TAAAAAAGGAAATAGATGTA+AGG - chr4_1:21737998-21738017 None:intergenic 20.0%
!! AATTGTGGATGAATTTAATA+TGG - chr4_1:21738084-21738103 None:intergenic 20.0%
!! TCATGATAATATTTCAATTG+TGG - chr4_1:21738099-21738118 None:intergenic 20.0%
!!! ATACATTATGTTTAAGTTTC+TGG + chr4_1:21738384-21738403 Msa0540140:intron 20.0%
!! TTAGTAAACACTACAAATTA+TGG - chr4_1:21738410-21738429 None:intergenic 20.0%
!!! TTTTTGCTTATATTTTTGGA+CGG - chr4_1:21738765-21738784 None:intergenic 20.0%
!!! TTTTTGTTTATATTTTGGGA+CGG + chr4_1:21738852-21738871 Msa0540140:intron 20.0%
!!! TTTAAAATTTGTTACAACGT+GGG - chr4_1:21738948-21738967 None:intergenic 20.0%
!!! ATTTAAAATTTGTTACAACG+TGG - chr4_1:21738949-21738968 None:intergenic 20.0%
!! TGACAAAAGTTACAATTTAT+GGG - chr4_1:21739041-21739060 None:intergenic 20.0%
!! TTGACAAAAGTTACAATTTA+TGG - chr4_1:21739042-21739061 None:intergenic 20.0%
!! AATGAATGAAATGTATTTGT+AGG + chr4_1:21739287-21739306 Msa0540140:intron 20.0%
!!! ATAAGTTGTTTCACTATAAT+AGG - chr4_1:21739651-21739670 None:intergenic 20.0%
! GTCCTTTCAAAAATTTGATA+TGG + chr4_1:21736944-21736963 Msa0540140:CDS 25.0%
! GAATCCAAATTTAATTGGTT+AGG + chr4_1:21737223-21737242 Msa0540140:intron 25.0%
! TCATCCTAACCAATTAAATT+TGG - chr4_1:21737230-21737249 None:intergenic 25.0%
!!! GTTTTTTTTTTTTTAGTGGC+CGG + chr4_1:21737320-21737339 Msa0540140:intron 25.0%
!!! TTTTTTTTTTTTTAGTGGCC+GGG + chr4_1:21737321-21737340 Msa0540140:intron 25.0%
! TGCATAAAATATGTATGTCT+GGG - chr4_1:21737355-21737374 None:intergenic 25.0%
! ATGCATAAAATATGTATGTC+TGG - chr4_1:21737356-21737375 None:intergenic 25.0%
!!! TTTTAATTGTAAGAGACCTA+AGG - chr4_1:21737464-21737483 None:intergenic 25.0%
!! ATTTTTGTATCTCAAAACGT+TGG + chr4_1:21737674-21737693 Msa0540140:intron 25.0%
! AGGAATACTTACAAGAAAAT+TGG + chr4_1:21738595-21738614 Msa0540140:CDS 25.0%
!! GGTGAAGTATTTAACATATA+CGG - chr4_1:21738743-21738762 None:intergenic 25.0%
!!! TTTTGCTTATATTTTTGGAC+GGG - chr4_1:21738764-21738783 None:intergenic 25.0%
! ACAAAAGTTACAATTTATGG+GGG - chr4_1:21739039-21739058 None:intergenic 25.0%
! GACAAAAGTTACAATTTATG+GGG - chr4_1:21739040-21739059 None:intergenic 25.0%
!! GATAGATGTTTGACAATTTT+GGG - chr4_1:21739101-21739120 None:intergenic 25.0%
!! TGATAGATGTTTGACAATTT+TGG - chr4_1:21739102-21739121 None:intergenic 25.0%
! AAGAAAAACCTATTCAAGAT+TGG + chr4_1:21739342-21739361 Msa0540140:CDS 25.0%
! AGAAAAACCTATTCAAGATT+GGG + chr4_1:21739343-21739362 Msa0540140:CDS 25.0%
! ATATTTCCTCAACAAATCAA+CGG + chr4_1:21739409-21739428 Msa0540140:CDS 25.0%
TGATATGGATGTTATAAGAG+AGG + chr4_1:21736959-21736978 Msa0540140:CDS 30.0%
TTGTTATGACAGTGCATAAA+AGG - chr4_1:21737285-21737304 None:intergenic 30.0%
!!! TTTTTTTTTTTTAGTGGCCG+GGG + chr4_1:21737322-21737341 Msa0540140:intron 30.0%
GCATAAAATATGTATGTCTG+GGG - chr4_1:21737354-21737373 None:intergenic 30.0%
CAGTTATTACAAAGCATGAA+AGG - chr4_1:21737414-21737433 None:intergenic 30.0%
TATCTTGTCATCTTAACCTT+GGG - chr4_1:21737437-21737456 None:intergenic 30.0%
TTATCTTGTCATCTTAACCT+TGG - chr4_1:21737438-21737457 None:intergenic 30.0%
! ACTTTTGTATCTCAAAACGT+TGG - chr4_1:21737708-21737727 None:intergenic 30.0%
TTGAAAGTTTGGTAGGAAAA+GGG - chr4_1:21737894-21737913 None:intergenic 30.0%
TTTGAAAGTTTGGTAGGAAA+AGG - chr4_1:21737895-21737914 None:intergenic 30.0%
!!! ACCTTTTGAAACTTTTTCAG+AGG + chr4_1:21738057-21738076 Msa0540140:intron 30.0%
! ACCTCTGAAAAAGTTTCAAA+AGG - chr4_1:21738061-21738080 None:intergenic 30.0%
CTACGAACTCCTTTATAATT+TGG + chr4_1:21738302-21738321 Msa0540140:intron 30.0%
GATGTAGGACCAAATTATAA+AGG - chr4_1:21738314-21738333 None:intergenic 30.0%
TTATTTATGCTAGTCGATGT+AGG - chr4_1:21738329-21738348 None:intergenic 30.0%
TGCACAGAAAAATGTAAGAT+TGG + chr4_1:21738448-21738467 Msa0540140:intron 30.0%
! TAAGTTTTGCGAAATTCAAC+AGG - chr4_1:21739069-21739088 None:intergenic 30.0%
ATGGAGGAAATTAACGAATA+GGG - chr4_1:21739129-21739148 None:intergenic 30.0%
AGTGTCAAATAGGCAATTAA+CGG - chr4_1:21739168-21739187 None:intergenic 30.0%
GAAATGTATTTGTAGGAAGA+TGG + chr4_1:21739294-21739313 Msa0540140:intron 30.0%
GAGGAAATATTGTTCATTTG+TGG - chr4_1:21739399-21739418 None:intergenic 30.0%
! TTGATTTTCTCTTTGCATGA+AGG - chr4_1:21739436-21739455 None:intergenic 30.0%
!!! AGTTTTGCAAGTGTTGATAA+TGG - chr4_1:21739536-21739555 None:intergenic 30.0%
!! GAAAGCTGATTGATTTGATT+GGG - chr4_1:21739876-21739895 None:intergenic 30.0%
!! TGAAAGCTGATTGATTTGAT+TGG - chr4_1:21739877-21739896 None:intergenic 30.0%
AAATCAATCAGCTTTCATTG+AGG + chr4_1:21739880-21739899 Msa0540140:CDS 30.0%
AATCAATCAGCTTTCATTGA+GGG + chr4_1:21739881-21739900 Msa0540140:CDS 30.0%
TGAAGTAACTCTTCATCAGT+CGG - chr4_1:21736903-21736922 None:intergenic 35.0%
TATGGATGTTATAAGAGAGG+TGG + chr4_1:21736962-21736981 Msa0540140:CDS 35.0%
TTATGACAGTGCATAAAAGG+AGG - chr4_1:21737282-21737301 None:intergenic 35.0%
GATGACAAGATAATTGCCTT+AGG + chr4_1:21737445-21737464 Msa0540140:intron 35.0%
TTAGGCTCTGTTTGAAAGTT+TGG - chr4_1:21737905-21737924 None:intergenic 35.0%
!! TATCATGAAGAGTTTGCTGT+TGG + chr4_1:21738111-21738130 Msa0540140:intron 35.0%
TGTCTTGAGCTTTCATAGTT+AGG + chr4_1:21738156-21738175 Msa0540140:intron 35.0%
GTCTTGAGCTTTCATAGTTA+GGG + chr4_1:21738157-21738176 Msa0540140:intron 35.0%
! AAGAAATACCACTCGTTTTG+TGG - chr4_1:21738481-21738500 None:intergenic 35.0%
ACTAATAGAGCAACAAATGC+AGG + chr4_1:21738538-21738557 Msa0540140:CDS 35.0%
CTAATAGAGCAACAAATGCA+GGG + chr4_1:21738539-21738558 Msa0540140:CDS 35.0%
AAGACTCTTGTGTTCTACAA+AGG + chr4_1:21738625-21738644 Msa0540140:CDS 35.0%
AAAGAGATGCATACATTGGT+AGG - chr4_1:21738718-21738737 None:intergenic 35.0%
GGGGTAATTGACTATTTACT+CGG - chr4_1:21739020-21739039 None:intergenic 35.0%
GATGGAGGAAATTAACGAAT+AGG - chr4_1:21739130-21739149 None:intergenic 35.0%
AAAAGTCATGCCACATCATA+GGG + chr4_1:21739201-21739220 Msa0540140:intron 35.0%
TGTATTTGTAGGAAGATGGA+TGG + chr4_1:21739298-21739317 Msa0540140:intron 35.0%
GTATTTGTAGGAAGATGGAT+GGG + chr4_1:21739299-21739318 Msa0540140:intron 35.0%
AACAACATCAAAACCACCAT+AGG + chr4_1:21739469-21739488 Msa0540140:CDS 35.0%
!! TTGATAATGGAGACTAAGCT+CGG - chr4_1:21739523-21739542 None:intergenic 35.0%
! TAATCAAAGTTAGCCTGTAG+AGG - chr4_1:21739597-21739616 None:intergenic 35.0%
ATAGGTTGTTCTGTCTGTAA+AGG - chr4_1:21739633-21739652 None:intergenic 35.0%
AGGTATCAAGTTTCAGAATC+TGG + chr4_1:21739711-21739730 Msa0540140:CDS 35.0%
TGGTGAAGGAATGAATGAAT+GGG + chr4_1:21739785-21739804 Msa0540140:CDS 35.0%
ATCAATCAGCTTTCATTGAG+GGG + chr4_1:21739882-21739901 Msa0540140:CDS 35.0%
ACTTGAACAAGATGGAACCT+TGG + chr4_1:21736985-21737004 Msa0540140:CDS 40.0%
CTTGAACAAGATGGAACCTT+GGG + chr4_1:21736986-21737005 Msa0540140:CDS 40.0%
! ATTTTACCTTGCAAGTCCCA+AGG - chr4_1:21737005-21737024 None:intergenic 40.0%
! TGAGCATAACTCAGTTGGTA+AGG - chr4_1:21737382-21737401 None:intergenic 40.0%
TGCTTTGTAATAACTGCCCA+AGG + chr4_1:21737418-21737437 Msa0540140:intron 40.0%
TTTAGGAGGGATGAGATTAG+AGG - chr4_1:21737862-21737881 None:intergenic 40.0%
AAGTTTGGTAGGAAAAGGGA+GGG - chr4_1:21737890-21737909 None:intergenic 40.0%
AAAGTTTGGTAGGAAAAGGG+AGG - chr4_1:21737891-21737910 None:intergenic 40.0%
GCTCTGTTTGAAAGTTTGGT+AGG - chr4_1:21737901-21737920 None:intergenic 40.0%
GCAACTCTACAAAATTACGC+AGG - chr4_1:21738188-21738207 None:intergenic 40.0%
GCAAGTTCAAGATGTACGAA+AGG - chr4_1:21738236-21738255 None:intergenic 40.0%
! TCGTACATCTTGAACTTGCT+TGG + chr4_1:21738237-21738256 Msa0540140:intron 40.0%
GTGGTATTTCTTCAGTCACA+AGG + chr4_1:21738489-21738508 Msa0540140:CDS 40.0%
TATTAGTCCTTGACCCTGTT+GGG - chr4_1:21738525-21738544 None:intergenic 40.0%
! CAATCAGTCTTTTGTCCATG+AGG - chr4_1:21738658-21738677 None:intergenic 40.0%
CTCATGGACAAAAGACTGAT+TGG + chr4_1:21738656-21738675 Msa0540140:CDS 40.0%
CATGAATACCGTCTTGAAGA+TGG + chr4_1:21738685-21738704 Msa0540140:CDS 40.0%
GATCATTGCCATCTTCAAGA+CGG - chr4_1:21738696-21738715 None:intergenic 40.0%
GGAGAAAGAGATGCATACAT+TGG - chr4_1:21738722-21738741 None:intergenic 40.0%
GAAAAGTCATGCCACATCAT+AGG + chr4_1:21739200-21739219 Msa0540140:intron 40.0%
AAAGTCATGCCACATCATAG+GGG + chr4_1:21739202-21739221 Msa0540140:intron 40.0%
AGTCAATAACCCCTATGATG+TGG - chr4_1:21739214-21739233 None:intergenic 40.0%
CTTCACTCCCAATCTTGAAT+AGG - chr4_1:21739353-21739372 None:intergenic 40.0%
CTATTCAAGATTGGGAGTGA+AGG + chr4_1:21739351-21739370 Msa0540140:CDS 40.0%
TTGTGGATCTTGATTGTGTG+TGG - chr4_1:21739382-21739401 None:intergenic 40.0%
!! TGATAATGGAGACTAAGCTC+GGG - chr4_1:21739522-21739541 None:intergenic 40.0%
AATCCTAGAGATTGTGAGAG+TGG + chr4_1:21739675-21739694 Msa0540140:CDS 40.0%
! TCAGAATCTGGCATTGAAGT+TGG + chr4_1:21739723-21739742 Msa0540140:CDS 40.0%
TTGTGAACCACCTCAAGAAA+TGG + chr4_1:21739749-21739768 Msa0540140:CDS 40.0%
TGTGAACCACCTCAAGAAAT+GGG + chr4_1:21739750-21739769 Msa0540140:CDS 40.0%
GTGGTGAAGGAATGAATGAA+TGG + chr4_1:21739784-21739803 Msa0540140:CDS 40.0%
GGTGAAGGAATGAATGAATG+GGG + chr4_1:21739786-21739805 Msa0540140:CDS 40.0%
ATGAATGGGGAATGCTTGAT+AGG + chr4_1:21739799-21739818 Msa0540140:CDS 40.0%
GAATGATGACTCCACAAAAG+AGG + chr4_1:21739827-21739846 Msa0540140:CDS 40.0%
! AAACCTTGTAGCCTCTTTTG+TGG - chr4_1:21739841-21739860 None:intergenic 40.0%
AAAAGAGGCTACAAGGTTTG+AGG + chr4_1:21739842-21739861 Msa0540140:CDS 40.0%
!!! AGATGGATTTTTGGGGCTAT+GGG + chr4_1:21739907-21739926 Msa0540140:CDS 40.0%
! AGAGGTGGACTTGAACAAGA+TGG + chr4_1:21736977-21736996 Msa0540140:CDS 45.0%
TCTCGTGAGCATAACTCAGT+TGG - chr4_1:21737387-21737406 None:intergenic 45.0%
AGTTTGGTAGGAAAAGGGAG+GGG - chr4_1:21737889-21737908 None:intergenic 45.0%
!! AAGGACAGAAAGTACCCAAC+AGG + chr4_1:21738508-21738527 Msa0540140:CDS 45.0%
!! AGGACAGAAAGTACCCAACA+GGG + chr4_1:21738509-21738528 Msa0540140:CDS 45.0%
CTATTAGTCCTTGACCCTGT+TGG - chr4_1:21738526-21738545 None:intergenic 45.0%
! GAGCAACAAATGCAGGGTTT+TGG + chr4_1:21738545-21738564 Msa0540140:CDS 45.0%
CAGGAAGAGACAAGTGCATT+AGG + chr4_1:21738575-21738594 Msa0540140:CDS 45.0%
ACCATGTGGCAGTGTCAAAT+AGG - chr4_1:21739178-21739197 None:intergenic 45.0%
! GCATGACTTTTCTGACCATG+TGG - chr4_1:21739192-21739211 None:intergenic 45.0%
TTTGTAGGAAGATGGATGGG+TGG + chr4_1:21739302-21739321 Msa0540140:intron 45.0%
TTCAAGATTGGGAGTGAAGG+TGG + chr4_1:21739354-21739373 Msa0540140:CDS 45.0%
!! GAAGGACCGTTGATTTGTTG+AGG - chr4_1:21739418-21739437 None:intergenic 45.0%
AACCACCATAGGAACCTATC+CGG + chr4_1:21739480-21739499 Msa0540140:CDS 45.0%
! AAGTTAGCCTGTAGAGGTTG+AGG - chr4_1:21739591-21739610 None:intergenic 45.0%
CTACCACTCTCACAATCTCT+AGG - chr4_1:21739681-21739700 None:intergenic 45.0%
! GATTGTGAGAGTGGTAGTGA+TGG + chr4_1:21739684-21739703 Msa0540140:CDS 45.0%
! AGAGTGGTAGTGATGGTTTG+AGG + chr4_1:21739691-21739710 Msa0540140:CDS 45.0%
CTTCCTACACCCATTTCTTG+AGG - chr4_1:21739762-21739781 None:intergenic 45.0%
CTCAAGAAATGGGTGTAGGA+AGG + chr4_1:21739760-21739779 Msa0540140:CDS 45.0%
ACTCCACAAAAGAGGCTACA+AGG + chr4_1:21739835-21739854 Msa0540140:CDS 45.0%
!! TGAGGGGAGAGATGGATTTT+TGG + chr4_1:21739898-21739917 Msa0540140:CDS 45.0%
!! GAGGGGAGAGATGGATTTTT+GGG + chr4_1:21739899-21739918 Msa0540140:CDS 45.0%
!! AGGGGAGAGATGGATTTTTG+GGG + chr4_1:21739900-21739919 Msa0540140:CDS 45.0%
!!! GAGATGGATTTTTGGGGCTA+TGG + chr4_1:21739906-21739925 Msa0540140:CDS 45.0%
!! TGAATTTATAATAATAAAAA+AGG - chr4_1:21738012-21738031 None:intergenic 5.0%
!!! ATTAAAATATTTATTTTCAT+TGG - chr4_1:21738354-21738373 None:intergenic 5.0%
GTCGGATGAAATCGAAACCC+CGG - chr4_1:21736885-21736904 None:intergenic 50.0%
ATGGAACCTTGGGACTTGCA+AGG + chr4_1:21736996-21737015 Msa0540140:CDS 50.0%
! TATGTCTGGGGTTCAAACCC+CGG - chr4_1:21737342-21737361 None:intergenic 50.0%
GAAAAGGGAGGGGAGAGTTT+AGG - chr4_1:21737879-21737898 None:intergenic 50.0%
GATCGACACCACAAAACGAG+TGG + chr4_1:21738470-21738489 Msa0540140:CDS 50.0%
!! GAAAGTACCCAACAGGGTCA+AGG + chr4_1:21738515-21738534 Msa0540140:CDS 50.0%
!!! GCAGGGTTTTGGAAAGCTAC+AGG + chr4_1:21738556-21738575 Msa0540140:CDS 50.0%
TACAAAGGCAGAGCTCCTCA+TGG + chr4_1:21738640-21738659 Msa0540140:CDS 50.0%
! CCACATCAGCATGTTGATGG+AGG - chr4_1:21739145-21739164 None:intergenic 50.0%
CCTCCATCAACATGCTGATG+TGG + chr4_1:21739142-21739161 Msa0540140:intron 50.0%
GCCTATTTGACACTGCCACA+TGG + chr4_1:21739174-21739193 Msa0540140:intron 50.0%
AAGATGGATGGGTGGTATGC+AGG + chr4_1:21739310-21739329 Msa0540140:CDS 50.0%
AGATGGATGGGTGGTATGCA+GGG + chr4_1:21739311-21739330 Msa0540140:CDS 50.0%
AACCGGATAGGTTCCTATGG+TGG - chr4_1:21739485-21739504 None:intergenic 50.0%
CGAAACCGGATAGGTTCCTA+TGG - chr4_1:21739488-21739507 None:intergenic 50.0%
TTTCGAGCTCGAAACCGGAT+AGG - chr4_1:21739497-21739516 None:intergenic 50.0%
CCTACACCCATTTCTTGAGG+TGG - chr4_1:21739759-21739778 None:intergenic 50.0%
CCACCTCAAGAAATGGGTGT+AGG + chr4_1:21739756-21739775 Msa0540140:CDS 50.0%
GAAATGGGTGTAGGAAGGAG+TGG + chr4_1:21739765-21739784 Msa0540140:CDS 50.0%
GCTTTCATTGAGGGGAGAGA+TGG + chr4_1:21739890-21739909 Msa0540140:CDS 50.0%
TTCTAATGGCGGTGTGCCAC+CGG + chr4_1:21736863-21736882 Msa0540140:CDS 55.0%
GGATGAAATCGAAACCCCGG+TGG - chr4_1:21736882-21736901 None:intergenic 55.0%
AGGGAGGGGAGAGTTTAGGA+GGG - chr4_1:21737875-21737894 None:intergenic 55.0%
AAGGGAGGGGAGAGTTTAGG+AGG - chr4_1:21737876-21737895 None:intergenic 55.0%
CGGCCACATCAGCATGTTGA+TGG - chr4_1:21739148-21739167 None:intergenic 55.0%
!! GGGCTTTTCGAGCTCGAAAC+CGG - chr4_1:21739502-21739521 None:intergenic 55.0%
TAGAGGTTGAGGCTGGGGTT+GGG - chr4_1:21739580-21739599 None:intergenic 55.0%
AGCCTGTAGAGGTTGAGGCT+GGG - chr4_1:21739586-21739605 None:intergenic 55.0%
TAGCCTGTAGAGGTTGAGGC+TGG - chr4_1:21739587-21739606 None:intergenic 55.0%
GGTGTAGGAAGGAGTGGTGA+AGG + chr4_1:21739771-21739790 Msa0540140:CDS 55.0%
TCTAATGGCGGTGTGCCACC+GGG + chr4_1:21736864-21736883 Msa0540140:CDS 60.0%
GTAGAGGTTGAGGCTGGGGT+TGG - chr4_1:21739581-21739600 None:intergenic 60.0%
ACCCCAGCCTCAACCTCTAC+AGG + chr4_1:21739581-21739600 Msa0540140:CDS 60.0%
GCCTGTAGAGGTTGAGGCTG+GGG - chr4_1:21739585-21739604 None:intergenic 60.0%
CTAATGGCGGTGTGCCACCG+GGG + chr4_1:21736865-21736884 Msa0540140:CDS 65.0%
GTTGAGGCTGGGGTTGGGAG+TGG - chr4_1:21739575-21739594 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 21736855 21739938 21736855 ID=Msa0540140;Name=Msa0540140
chr4_1 mRNA 21736855 21739938 21736855 ID=Msa0540140-mRNA-1;Parent=Msa0540140;Name=Msa0540140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|353
chr4_1 exon 21736855 21737017 21736855 ID=Msa0540140-mRNA-1:exon:6170;Parent=Msa0540140-mRNA-1
chr4_1 exon 21738455 21738723 21738455 ID=Msa0540140-mRNA-1:exon:6171;Parent=Msa0540140-mRNA-1
chr4_1 exon 21739309 21739938 21739309 ID=Msa0540140-mRNA-1:exon:6172;Parent=Msa0540140-mRNA-1
chr4_1 CDS 21736855 21737017 21736855 ID=Msa0540140-mRNA-1:cds;Parent=Msa0540140-mRNA-1
chr4_1 CDS 21738455 21738723 21738455 ID=Msa0540140-mRNA-1:cds;Parent=Msa0540140-mRNA-1
chr4_1 CDS 21739309 21739938 21739309 ID=Msa0540140-mRNA-1:cds;Parent=Msa0540140-mRNA-1
Gene Sequence

>Msa0540140

ATGAGTTCTTCTAATGGCGGTGTGCCACCGGGGTTTCGATTTCATCCGACTGATGAAGAGTTACTTCATTACTATTTGAAAAAGAAGGTGTCCTTTCAAAAATTTGATATGGATGTTATAAGAGAGGTGGACTTGAACAAGATGGAACCTTGGGACTTGCAAGAAAAATGTAAGATTGGATCGACACCACAAAACGAGTGGTATTTCTTCAGTCACAAGGACAGAAAGTACCCAACAGGGTCAAGGACTAATAGAGCAACAAATGCAGGGTTTTGGAAAGCTACAGGAAGAGACAAGTGCATTAGGAATACTTACAAGAAAATTGGAATGAGAAAGACTCTTGTGTTCTACAAAGGCAGAGCTCCTCATGGACAAAAGACTGATTGGATTATGCATGAATACCGTCTTGAAGATGGCAATGATCCTACCAATGAAGATGGATGGGTGGTATGCAGGGTGTTCAAGAAGAAAAACCTATTCAAGATTGGGAGTGAAGGTGGATCCACACACAATCAAGATCCACAAATGAACAATATTTCCTCAACAAATCAACGGTCCTTCATGCAAAGAGAAAATCAATACTTACTACATCAACAACATCAAAACCACCATAGGAACCTATCCGGTTTCGAGCTCGAAAAGCCCGAGCTTAGTCTCCATTATCAACACTTGCAAAACTCTCAATACTCAATCTTCCACTCCCAACCCCAGCCTCAACCTCTACAGGCTAACTTTGATTACTCATATGCATCACCTTTACAGACAGAACAACCTATTATAGTGAAACAACTTATGACAAATCCTAGAGATTGTGAGAGTGGTAGTGATGGTTTGAGGTATCAAGTTTCAGAATCTGGCATTGAAGTTGGCTCTTGTGAACCACCTCAAGAAATGGGTGTAGGAAGGAGTGGTGAAGGAATGAATGAATGGGGAATGCTTGATAGGCTTGTGAATGATGACTCCACAAAAGAGGCTACAAGGTTTGAGGATGCAAATCCCAATCAAATCAATCAGCTTTCATTGAGGGGAGAGATGGATTTTTGGGGCTATGGGAAACAATGA
Protein sequence

>Msa0540140

MSSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQEKCKIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNTYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPTNEDGWVVCRVFKKKNLFKIGSEGGSTHNQDPQMNNISSTNQRSFMQRENQYLLHQQHQNHHRNLSGFELEKPELSLHYQHLQNSQYSIFHSQPQPQPLQANFDYSYASPLQTEQPIIVKQLMTNPRDCESGSDGLRYQVSESGIEVGSCEPPQEMGVGRSGEGMNEWGMLDRLVNDDSTKEATRFEDANPNQINQLSLRGEMDFWGYGKQ*