AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1371870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371870 MtrunA17_Chr4g0017921 97.222 360 3 2 2 360 1 354 0.0 729
Msa1371870 MtrunA17_Chr8g0346001 74.096 166 37 2 9 168 15 180 9.14e-88 271
Msa1371870 MtrunA17_Chr2g0309331 76.582 158 31 2 9 165 10 162 2.02e-87 267
Msa1371870 MtrunA17_Chr5g0405211 70.303 165 42 2 2 165 1 159 6.12e-82 253
Msa1371870 MtrunA17_Chr4g0056541 73.718 156 36 1 9 164 7 157 3.55e-79 246
Msa1371870 MtrunA17_Chr4g0018391 70.513 156 41 1 9 164 7 157 8.28e-79 245
Msa1371870 MtrunA17_Chr8g0372121 63.934 183 57 3 9 188 6 182 3.66e-78 242
Msa1371870 MtrunA17_Chr5g0398971 44.969 318 140 7 9 324 7 291 3.88e-77 241
Msa1371870 MtrunA17_Chr1g0200561 57.921 202 73 4 9 203 19 215 1.12e-72 229
Msa1371870 MtrunA17_Chr2g0316971 59.259 162 60 3 6 165 20 177 3.49e-60 198
Msa1371870 MtrunA17_Chr6g0481091 55.975 159 66 2 8 166 5 159 1.00e-59 192
Msa1371870 MtrunA17_Chr2g0309891 55.484 155 66 2 9 163 6 157 2.67e-59 195
Msa1371870 MtrunA17_Chr4g0060931 56.805 169 63 3 9 177 17 175 1.43e-58 193
Msa1371870 MtrunA17_Chr3g0091921 60.000 155 58 2 9 163 16 166 1.48e-58 191
Msa1371870 MtrunA17_Chr6g0484441 58.065 155 57 2 9 163 5 151 7.39e-58 190
Msa1371870 MtrunA17_Chr1g0147421 58.861 158 54 4 9 163 27 176 6.16e-57 189
Msa1371870 MtrunA17_Chr4g0042561 42.599 277 138 10 3 271 3 266 8.81e-57 186
Msa1371870 MtrunA17_Chr5g0433781 50.276 181 79 5 8 183 5 179 3.38e-56 194
Msa1371870 MtrunA17_Chr7g0253011 59.119 159 57 3 9 163 17 171 4.77e-56 187
Msa1371870 MtrunA17_Chr6g0453451 56.875 160 65 2 9 168 20 175 4.91e-56 186
Msa1371870 MtrunA17_Chr5g0417791 55.280 161 68 2 9 168 3 160 1.19e-55 182
Msa1371870 MtrunA17_Chr7g0252971 47.568 185 84 3 2 176 1 182 1.55e-55 185
Msa1371870 MtrunA17_Chr3g0109821 48.691 191 87 5 8 194 5 188 2.18e-55 192
Msa1371870 MtrunA17_Chr3g0139331 54.777 157 61 3 9 163 11 159 2.47e-55 184
Msa1371870 MtrunA17_Chr2g0312321 41.270 252 126 7 2 251 4 235 1.89e-54 181
Msa1371870 MtrunA17_Chr2g0318101 40.856 257 117 6 1 226 7 259 2.99e-54 182
Msa1371870 MtrunA17_Chr6g0461661 54.375 160 67 3 9 166 18 173 6.47e-54 182
Msa1371870 MtrunA17_Chr7g0217721 51.546 194 73 5 12 188 22 211 1.35e-53 180
Msa1371870 MtrunA17_Chr8g0359921 54.194 155 67 2 9 163 14 164 1.18e-52 177
Msa1371870 MtrunA17_Chr2g0318081 53.165 158 62 3 9 163 16 164 2.76e-52 177
Msa1371870 MtrunA17_Chr3g0124761 52.174 161 73 2 4 164 2 158 3.86e-52 174
Msa1371870 MtrunA17_Chr1g0183741 51.572 159 65 3 7 163 8 156 1.20e-51 173
Msa1371870 MtrunA17_Chr3g0130731 52.564 156 70 2 9 164 7 158 2.18e-51 172
Msa1371870 MtrunA17_Chr5g0400461 39.844 256 137 6 7 255 4 249 8.84e-51 172
Msa1371870 MtrunA17_Chr7g0214071 53.750 160 57 4 9 164 15 161 2.35e-50 169
Msa1371870 MtrunA17_Chr3g0144271 58.333 144 53 4 8 147 22 162 2.74e-50 173
Msa1371870 MtrunA17_Chr7g0261411 51.592 157 64 3 7 161 8 154 2.95e-50 169
Msa1371870 MtrunA17_Chr7g0217711 62.500 128 45 1 11 138 21 145 9.98e-50 164
Msa1371870 MtrunA17_Chr6g0453131 50.617 162 70 3 11 165 17 175 1.47e-49 171
Msa1371870 MtrunA17_Chr4g0047841 46.369 179 71 3 9 165 15 190 6.75e-49 167
Msa1371870 MtrunA17_Chr7g0263931 51.899 158 70 3 9 163 11 165 9.82e-49 167
Msa1371870 MtrunA17_Chr8g0361731 44.149 188 91 4 11 190 16 197 1.37e-48 168
Msa1371870 MtrunA17_Chr8g0384721 50.920 163 63 4 9 164 7 159 2.05e-48 165
Msa1371870 MtrunA17_Chr1g0197351 51.572 159 73 2 11 166 44 201 3.03e-48 169
Msa1371870 MtrunA17_Chr5g0417001 49.390 164 73 3 9 165 14 174 3.37e-48 167
Msa1371870 MtrunA17_Chr2g0326361 50.610 164 75 3 3 163 8 168 1.17e-47 164
Msa1371870 MtrunA17_Chr5g0428991 51.553 161 66 3 9 165 25 177 1.90e-47 170
Msa1371870 MtrunA17_Chr3g0130101 49.351 154 74 2 11 164 9 158 2.22e-47 164
Msa1371870 MtrunA17_Chr4g0054791 50.000 162 70 4 7 163 4 159 1.19e-46 161
Msa1371870 MtrunA17_Chr3g0128111 48.734 158 69 4 12 165 45 194 6.42e-46 157
Msa1371870 MtrunA17_Chr8g0364791 49.045 157 70 3 11 164 8 157 8.10e-46 162
Msa1371870 MtrunA17_Chr3g0128151 49.068 161 70 3 9 165 22 174 8.34e-46 165
Msa1371870 MtrunA17_Chr3g0092671 48.701 154 73 3 11 163 7 155 1.31e-45 163
Msa1371870 MtrunA17_Chr1g0201021 49.020 153 74 3 11 163 21 169 3.69e-45 162
Msa1371870 MtrunA17_Chr1g0197361 48.052 154 74 3 11 163 10 158 4.19e-45 163
Msa1371870 MtrunA17_Chr8g0384201 47.771 157 72 3 11 164 8 157 8.86e-44 157
Msa1371870 MtrunA17_Chr4g0076731 45.283 159 78 3 9 166 54 204 1.05e-43 156
Msa1371870 MtrunA17_Chr5g0442771 34.470 264 131 8 9 235 18 276 5.69e-43 151
Msa1371870 MtrunA17_Chr2g0311651 34.940 249 135 9 9 234 21 265 1.44e-41 147
Msa1371870 MtrunA17_Chr4g0038751 44.886 176 83 4 11 183 17 181 2.15e-41 147
Msa1371870 MtrunA17_Chr2g0311661 36.283 226 113 8 9 211 20 237 3.13e-40 143
Msa1371870 MtrunA17_Chr8g0385991 41.899 179 92 4 9 183 14 184 8.64e-39 138
Msa1371870 MtrunA17_Chr3g0131911 42.945 163 81 4 9 164 14 171 2.55e-36 132
Msa1371870 MtrunA17_Chr3g0113001 55.556 126 38 5 53 168 4 121 2.73e-34 128
Msa1371870 MtrunA17_Chr8g0345671 44.937 158 74 5 6 160 8 155 1.43e-33 128
Msa1371870 MtrunA17_Chr2g0321741 40.351 171 82 5 23 188 1 156 2.40e-33 127
Msa1371870 MtrunA17_Chr2g0321631 41.975 162 84 5 7 161 2 160 6.30e-33 123
Msa1371870 MtrunA17_Chr4g0026141 38.788 165 92 4 10 168 6 167 2.80e-31 119
Msa1371870 MtrunA17_Chr8g0345691 45.223 157 69 7 9 160 12 156 8.04e-31 121
Msa1371870 MtrunA17_Chr8g0345711 41.618 173 86 6 1 161 4 173 2.07e-30 114
Msa1371870 MtrunA17_Chr3g0113031 58.095 105 39 3 75 177 3 104 3.61e-30 116
Msa1371870 MtrunA17_Chr4g0050701 37.500 160 84 4 9 163 11 159 1.91e-28 109
Msa1371870 MtrunA17_Chr7g0243371 53.409 88 39 1 65 150 17 104 1.42e-25 99.8
Msa1371870 MtrunA17_Chr7g0266701 35.542 166 101 4 9 168 4 169 4.95e-25 102
Msa1371870 MtrunA17_Chr8g0345731 41.060 151 80 6 9 152 24 172 1.41e-24 98.6
Msa1371870 MtrunA17_Chr8g0345741 44.286 140 71 5 20 154 2 139 2.49e-24 97.4
Msa1371870 MtrunA17_Chr8g0345721 38.182 165 67 6 12 142 38 201 6.70e-24 97.8
Msa1371870 MtrunA17_Chr8g0384351 33.880 183 93 7 3 185 4 158 3.51e-22 92.4
Msa1371870 MtrunA17_Chr8g0345701 37.349 166 83 6 5 153 3 164 1.72e-21 90.5
Msa1371870 MtrunA17_Chr3g0130321 33.333 171 91 8 9 167 7 166 2.40e-18 82.4
Msa1371870 MtrunA17_Chr7g0251661 29.932 147 98 5 1 146 2 144 3.87e-14 69.3
Msa1371870 MtrunA17_Chr7g0251651 31.515 165 101 8 2 164 11 165 5.30e-12 64.3
Msa1371870 MtrunA17_Chr3g0113011 62.222 45 17 0 10 54 20 64 1.17e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371870 AT4G10350.1 59.631 379 91 13 3 359 3 341 9.83e-143 408
Msa1371870 AT1G33280.1 55.738 366 88 13 2 356 1 303 1.17e-124 361
Msa1371870 AT4G10350.2 54.573 328 87 13 54 359 7 294 5.08e-103 305
Msa1371870 AT1G32770.1 73.214 168 38 1 9 169 16 183 4.71e-88 270
Msa1371870 AT1G79580.3 73.410 173 35 3 1 168 5 171 1.23e-86 266
Msa1371870 AT1G79580.5 73.410 173 35 3 1 168 5 171 1.23e-86 266
Msa1371870 AT1G79580.4 73.410 173 35 3 1 168 5 171 1.23e-86 266
Msa1371870 AT1G79580.2 73.410 173 35 3 1 168 5 171 1.23e-86 266
Msa1371870 AT1G79580.1 73.410 173 35 3 1 168 5 171 1.23e-86 266
Msa1371870 AT2G46770.1 68.508 181 44 3 1 168 5 185 1.32e-85 263
Msa1371870 AT3G61910.1 69.412 170 42 3 9 168 11 180 4.83e-82 253
Msa1371870 AT4G36160.1 73.248 157 35 2 9 164 10 160 6.84e-80 249
Msa1371870 AT4G36160.3 73.248 157 35 2 9 164 10 160 6.84e-80 249
Msa1371870 AT4G36160.2 73.248 157 35 2 9 164 14 164 7.05e-80 249
Msa1371870 AT2G18060.3 71.338 157 38 2 9 164 9 159 4.58e-79 247
Msa1371870 AT2G18060.1 71.338 157 38 2 9 164 9 159 4.58e-79 247
Msa1371870 AT1G12260.2 55.187 241 88 7 9 234 7 242 4.71e-79 246
Msa1371870 AT1G12260.1 55.462 238 86 7 9 231 7 239 1.33e-77 244
Msa1371870 AT1G62700.1 51.711 263 89 7 9 244 7 258 2.01e-77 243
Msa1371870 AT1G62700.2 51.711 263 89 7 9 244 7 258 2.01e-77 243
Msa1371870 AT5G66300.1 67.500 160 44 3 8 165 11 164 2.39e-74 232
Msa1371870 AT5G62380.2 67.516 157 44 2 9 164 7 157 4.13e-73 231
Msa1371870 AT5G62380.1 67.516 157 44 2 9 164 7 157 4.13e-73 231
Msa1371870 AT1G71930.2 64.331 157 51 1 7 163 7 158 1.31e-72 229
Msa1371870 AT1G71930.1 64.331 157 51 1 7 163 7 158 1.31e-72 229
Msa1371870 AT5G07680.2 43.682 277 131 7 9 276 3 263 5.52e-62 201
Msa1371870 AT5G07680.1 43.682 277 131 7 9 276 17 277 1.01e-61 201
Msa1371870 AT3G17730.1 56.522 161 62 3 8 166 5 159 2.22e-61 197
Msa1371870 AT5G61430.1 43.110 283 129 9 9 276 16 281 2.85e-61 200
Msa1371870 AT2G24430.2 58.896 163 58 3 8 168 15 170 1.56e-60 197
Msa1371870 AT2G24430.1 58.896 163 58 3 8 168 15 170 1.56e-60 197
Msa1371870 AT3G18400.1 58.025 162 57 3 9 168 5 157 9.13e-60 195
Msa1371870 AT5G39610.1 52.910 189 77 4 9 195 20 198 2.48e-58 191
Msa1371870 AT3G15170.1 58.125 160 61 3 9 166 20 175 4.88e-58 191
Msa1371870 AT5G53950.1 56.970 165 65 3 9 171 17 177 2.59e-56 188
Msa1371870 AT5G18270.2 58.228 158 61 3 9 165 21 174 3.47e-56 187
Msa1371870 AT1G76420.1 52.778 180 73 4 8 185 21 190 3.49e-56 187
Msa1371870 AT5G17260.1 56.051 157 64 3 8 163 5 157 4.41e-56 190
Msa1371870 AT5G18270.1 57.595 158 62 3 9 165 21 174 6.51e-56 186
Msa1371870 AT1G65910.1 55.063 158 67 2 9 166 6 159 1.34e-55 192
Msa1371870 AT3G03200.1 56.051 157 64 3 8 163 5 157 6.03e-55 187
Msa1371870 AT3G29035.1 58.824 153 59 2 9 161 24 172 7.28e-55 183
Msa1371870 AT1G69490.1 51.176 170 79 2 4 172 4 170 8.74e-55 181
Msa1371870 AT1G54330.1 56.329 158 58 3 8 163 5 153 2.96e-54 181
Msa1371870 AT3G04060.1 57.692 156 61 3 9 163 20 171 3.71e-54 181
Msa1371870 AT3G10480.1 53.614 166 74 2 1 166 19 181 5.18e-54 184
Msa1371870 AT3G04070.2 51.205 166 69 3 7 163 8 170 7.20e-54 181
Msa1371870 AT3G10480.2 53.012 166 74 2 1 166 19 180 2.43e-53 182
Msa1371870 AT1G56010.2 50.610 164 77 2 1 163 11 171 8.18e-53 177
Msa1371870 AT3G12977.1 50.000 166 72 3 1 163 10 167 1.21e-52 176
Msa1371870 AT3G10490.1 51.829 164 76 2 3 166 21 181 1.43e-52 174
Msa1371870 AT1G61110.1 52.121 165 66 4 9 163 16 177 6.08e-52 175
Msa1371870 AT4G27410.2 52.229 157 69 2 9 165 14 164 7.19e-52 174
Msa1371870 AT3G04070.1 46.703 182 69 3 7 163 8 186 2.72e-51 175
Msa1371870 AT3G15500.1 51.282 156 70 2 9 164 14 163 2.85e-51 173
Msa1371870 AT3G10490.2 51.829 164 76 2 3 166 21 181 3.05e-51 177
Msa1371870 AT1G77450.1 49.398 166 80 2 3 168 4 165 3.95e-51 171
Msa1371870 AT3G10500.1 53.846 156 66 3 9 163 9 159 6.18e-51 178
Msa1371870 AT5G04410.1 53.548 155 68 3 9 163 9 159 6.45e-51 179
Msa1371870 AT5G63790.2 52.532 158 69 3 9 164 60 213 1.41e-50 172
Msa1371870 AT5G63790.1 52.532 158 69 3 9 164 50 203 1.44e-50 171
Msa1371870 AT1G52890.1 50.955 157 71 2 9 165 14 164 1.87e-50 171
Msa1371870 AT1G01720.1 51.592 157 71 3 9 164 7 159 1.50e-49 168
Msa1371870 AT5G08790.1 51.899 158 70 3 9 164 7 160 1.92e-49 167
Msa1371870 AT3G10480.3 45.455 198 74 2 1 166 19 214 3.31e-49 173
Msa1371870 AT3G15510.1 42.326 215 107 4 13 217 21 228 1.54e-48 167
Msa1371870 AT4G27410.3 49.112 169 69 4 9 163 14 179 4.28e-48 165
Msa1371870 AT5G46590.1 51.572 159 73 3 9 166 6 161 5.22e-48 164
Msa1371870 AT5G24590.2 49.412 170 79 4 5 172 9 173 3.05e-47 166
Msa1371870 AT1G26870.1 37.410 278 143 7 11 274 18 278 4.23e-47 165
Msa1371870 AT4G17980.1 50.318 157 74 3 9 163 6 160 4.55e-47 161
Msa1371870 AT1G33060.1 49.375 160 69 3 8 163 23 174 8.96e-47 169
Msa1371870 AT5G39820.1 45.198 177 74 3 9 165 20 193 1.05e-46 162
Msa1371870 AT1G33060.2 49.375 160 69 3 8 163 23 174 1.08e-46 168
Msa1371870 AT2G33480.2 50.000 156 67 2 9 164 15 159 1.16e-46 160
Msa1371870 AT5G46590.2 55.970 134 57 2 9 141 6 138 1.18e-46 160
Msa1371870 AT4G17980.2 50.318 157 74 3 9 163 6 160 1.37e-46 160
Msa1371870 AT1G52880.1 51.534 163 65 4 13 165 21 179 2.43e-46 160
Msa1371870 AT4G35580.1 49.068 161 70 3 9 165 9 161 2.79e-46 165
Msa1371870 AT4G35580.2 49.068 161 70 3 9 165 9 161 3.46e-46 165
Msa1371870 AT4G35580.3 49.068 161 70 3 9 165 9 161 3.62e-46 165
Msa1371870 AT2G33480.1 49.359 156 70 2 9 164 15 161 3.75e-46 159
Msa1371870 AT4G28530.1 47.701 174 61 5 9 163 10 172 8.02e-46 160
Msa1371870 AT3G49530.2 44.809 183 94 4 5 185 9 186 1.95e-45 160
Msa1371870 AT2G27300.1 38.942 208 109 5 2 208 7 197 4.85e-45 157
Msa1371870 AT3G49530.1 44.809 183 94 4 5 185 9 186 5.05e-45 161
Msa1371870 AT1G32510.1 43.147 197 101 5 9 197 6 199 1.65e-44 155
Msa1371870 AT2G02450.1 46.795 156 74 3 9 163 51 198 2.46e-44 157
Msa1371870 AT2G02450.2 46.795 156 74 3 9 163 51 198 2.84e-44 157
Msa1371870 AT5G13180.1 48.148 162 64 4 9 164 14 161 4.45e-44 152
Msa1371870 AT5G64060.1 46.203 158 81 2 9 166 6 159 1.39e-43 154
Msa1371870 AT2G43000.1 45.098 153 79 2 11 163 20 167 6.23e-43 150
Msa1371870 AT1G34190.1 44.444 153 81 3 11 163 18 166 1.11e-41 153
Msa1371870 AT1G34180.3 48.062 129 66 1 11 139 18 145 4.93e-41 150
Msa1371870 AT2G17040.1 39.196 199 102 5 11 202 8 194 8.84e-41 145
Msa1371870 AT5G09330.5 45.752 153 79 2 11 163 8 156 1.04e-40 149
Msa1371870 AT5G09330.2 45.752 153 79 2 11 163 8 156 1.04e-40 149
Msa1371870 AT5G09330.4 45.752 153 79 2 11 163 8 156 1.04e-40 149
Msa1371870 AT5G09330.3 45.752 153 79 2 11 163 8 156 1.04e-40 149
Msa1371870 AT5G09330.1 45.752 153 79 2 11 163 8 156 1.04e-40 149
Msa1371870 AT1G34180.1 48.062 129 66 1 11 139 18 145 1.41e-40 150
Msa1371870 AT3G44290.2 41.279 172 83 4 11 182 16 169 2.94e-40 142
Msa1371870 AT5G22290.1 43.902 164 79 4 1 164 15 165 6.15e-40 144
Msa1371870 AT1G34180.4 45.000 140 66 2 11 139 18 157 9.14e-40 146
Msa1371870 AT3G44290.1 41.279 172 83 4 11 182 16 169 1.85e-39 143
Msa1371870 AT1G34180.2 45.000 140 66 2 11 139 18 157 2.40e-39 147
Msa1371870 AT5G61430.2 39.648 227 108 8 65 276 6 218 3.41e-39 140
Msa1371870 AT5G04395.1 45.062 162 76 3 3 151 22 183 1.54e-38 136
Msa1371870 AT3G12910.1 44.048 168 74 5 11 163 23 185 5.97e-38 138
Msa1371870 AT1G32870.1 46.012 163 82 4 2 163 3 160 1.46e-37 142
Msa1371870 AT1G32870.2 46.012 163 82 4 2 163 3 160 1.51e-37 141
Msa1371870 AT1G32870.3 44.970 169 75 4 2 163 39 196 2.75e-37 141
Msa1371870 AT1G56010.1 59.794 97 39 0 67 163 8 104 4.83e-37 134
Msa1371870 AT3G12977.2 52.212 113 43 3 54 163 10 114 3.19e-34 126
Msa1371870 AT2G33480.3 48.571 105 51 1 60 164 3 104 1.36e-27 108
Msa1371870 AT2G18060.2 68.421 76 17 2 90 164 2 71 1.65e-27 109
Msa1371870 AT4G01520.1 36.310 168 93 5 10 172 5 163 1.51e-26 107
Msa1371870 AT4G01550.1 34.973 183 104 5 12 190 7 178 4.46e-26 108
Msa1371870 AT1G02230.1 45.926 135 56 6 10 135 4 130 2.77e-25 105
Msa1371870 AT4G01540.4 36.747 166 91 5 12 172 7 163 3.03e-25 105
Msa1371870 AT4G01540.3 36.747 166 91 5 12 172 7 163 4.21e-25 105
Msa1371870 AT4G01540.2 36.747 166 91 5 12 172 7 163 4.64e-25 105
Msa1371870 AT4G01540.1 36.747 166 91 5 12 172 7 163 5.86e-25 105
Msa1371870 AT4G28530.2 42.424 132 53 4 9 121 10 137 3.22e-24 101
Msa1371870 AT5G64530.1 36.905 168 78 6 9 163 3 155 7.48e-24 97.4
Msa1371870 AT5G64530.2 42.105 133 60 5 9 139 3 120 1.03e-23 96.3
Msa1371870 AT3G04420.2 34.940 166 89 5 10 169 4 156 5.45e-23 97.8
Msa1371870 AT3G04420.1 34.940 166 89 5 10 169 4 156 7.95e-23 98.2
Msa1371870 AT3G10490.4 52.439 82 37 1 85 166 2 81 2.90e-22 96.7
Msa1371870 AT3G10490.3 52.439 82 37 1 85 166 2 81 2.90e-22 96.7
Msa1371870 AT1G02250.1 33.796 216 120 12 10 217 4 204 7.59e-22 95.9
Msa1371870 AT5G22380.1 35.032 157 97 4 9 161 5 160 1.76e-21 92.4
Msa1371870 AT3G44350.2 33.544 158 94 5 12 163 8 160 1.95e-21 92.4
Msa1371870 AT3G44350.1 38.931 131 71 5 12 136 8 135 9.29e-21 88.2
Msa1371870 AT1G02220.1 38.519 135 65 5 9 135 3 127 3.24e-18 85.5
Msa1371870 AT5G50820.1 36.301 146 68 6 1 137 9 138 3.31e-18 82.0
Msa1371870 AT1G01010.1 32.704 159 86 6 12 160 6 153 7.38e-18 84.7
Msa1371870 AT2G43000.2 42.222 90 50 1 74 163 2 89 9.26e-18 80.9
Msa1371870 AT3G56530.1 28.221 163 108 3 1 161 44 199 1.07e-15 77.4
Msa1371870 AT5G22290.2 44.595 74 32 2 91 164 2 66 2.03e-14 72.4
Msa1371870 AT5G14000.2 32.353 136 83 3 6 137 10 140 1.25e-13 68.6
Msa1371870 AT3G55210.1 30.137 146 81 4 9 138 11 151 2.84e-13 69.7
Msa1371870 AT5G14000.1 32.353 136 83 3 6 137 10 140 3.95e-13 68.2
Msa1371870 AT3G04430.1 35.075 134 70 6 15 135 6 135 2.99e-11 62.4

Find 93 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAATACTTACAAGAAAAT+TGG 0.239923 tig0019252:-22701 Msa1371870:CDS
ATAAGTTGTTTCACTATAAT+AGG 0.269347 tig0019252:+21645 Msa1371870:intergenic
GAGCAACAAATGCAGGGTTT+TGG 0.295401 tig0019252:-22751 Msa1371870:CDS
AGGTATCAAGTTTCAGAATC+TGG 0.305736 tig0019252:-21582 Msa1371870:CDS
TTCTAATGGCGGTGTGCCAC+CGG 0.345325 tig0019252:-24478 Msa1371870:CDS
AAGATGGATGGGTGGTATGC+AGG 0.347766 tig0019252:-21983 Msa1371870:CDS
CTTCACTCCCAATCTTGAAT+AGG 0.355765 tig0019252:+21943 Msa1371870:intergenic
TTGTGAACCACCTCAAGAAA+TGG 0.360627 tig0019252:-21544 Msa1371870:CDS
TGAAAGCTGATTGATTTGAT+TGG 0.364349 tig0019252:+21419 Msa1371870:intergenic
CAGGAAGAGACAAGTGCATT+AGG 0.383725 tig0019252:-22721 Msa1371870:CDS
TATTAGTCCTTGACCCTGTT+GGG 0.386089 tig0019252:+22774 Msa1371870:intergenic
GTTGAGGCTGGGGTTGGGAG+TGG 0.389288 tig0019252:+21721 Msa1371870:intergenic
CAATGTATGCATCTCTTTCT+CGG 0.390294 tig0019252:-22576 Msa1371870:intron
TAGAGGTTGAGGCTGGGGTT+GGG 0.397901 tig0019252:+21716 Msa1371870:intergenic
GTAGAGGTTGAGGCTGGGGT+TGG 0.413911 tig0019252:+21715 Msa1371870:intergenic
CTATTAGTCCTTGACCCTGT+TGG 0.415287 tig0019252:+22773 Msa1371870:intergenic
CTCATGGACAAAAGACTGAT+TGG 0.417162 tig0019252:-22640 Msa1371870:CDS
GCCTGTAGAGGTTGAGGCTG+GGG 0.418162 tig0019252:+21711 Msa1371870:intergenic
TCTAATGGCGGTGTGCCACC+GGG 0.432129 tig0019252:-24477 Msa1371870:CDS
GAAAGCTGATTGATTTGATT+GGG 0.434532 tig0019252:+21420 Msa1371870:intergenic
ACTAATAGAGCAACAAATGC+AGG 0.444998 tig0019252:-22758 Msa1371870:CDS
AAGGACAGAAAGTACCCAAC+AGG 0.454734 tig0019252:-22788 Msa1371870:CDS
GAGGAAATATTGTTCATTTG+TGG 0.454849 tig0019252:+21897 Msa1371870:intergenic
TAGAGTATGAGTTCTTCTAA+TGG 0.457341 tig0019252:-24492 Msa1371870:CDS
TCAGAATCTGGCATTGAAGT+TGG 0.458946 tig0019252:-21570 Msa1371870:CDS
ATGAATGGGGAATGCTTGAT+AGG 0.460214 tig0019252:-21494 Msa1371870:CDS
CTTGAACAAGATGGAACCTT+GGG 0.472651 tig0019252:-24355 Msa1371870:CDS
ACCCCAGCCTCAACCTCTAC+AGG 0.478031 tig0019252:-21712 Msa1371870:CDS
AGATGGATGGGTGGTATGCA+GGG 0.480498 tig0019252:-21982 Msa1371870:CDS
TAGCCTGTAGAGGTTGAGGC+TGG 0.482716 tig0019252:+21709 Msa1371870:intergenic
GTGGTGAAGGAATGAATGAA+TGG 0.483190 tig0019252:-21509 Msa1371870:CDS
AGCCTGTAGAGGTTGAGGCT+GGG 0.491178 tig0019252:+21710 Msa1371870:intergenic
TGTGAACCACCTCAAGAAAT+GGG 0.493376 tig0019252:-21543 Msa1371870:CDS
AATCAATCAGCTTTCATTGA+GGG 0.497186 tig0019252:-21412 Msa1371870:CDS
TGGTGAAGGAATGAATGAAT+GGG 0.502961 tig0019252:-21508 Msa1371870:CDS
CATGAATACCGTCTTGAAGA+TGG 0.503674 tig0019252:-22611 Msa1371870:CDS
GAAATGTATTTGTAGGAAGA+TGG 0.506020 tig0019252:-21999 Msa1371870:intron
GCTTTCATTGAGGGGAGAGA+TGG 0.506539 tig0019252:-21403 Msa1371870:CDS
CCTACACCCATTTCTTGAGG+TGG 0.516209 tig0019252:+21537 Msa1371870:intergenic
CTTCCTACACCCATTTCTTG+AGG 0.516910 tig0019252:+21534 Msa1371870:intergenic
AAAAGAGGCTACAAGGTTTG+AGG 0.524109 tig0019252:-21451 Msa1371870:CDS
TTGTGGATCTTGATTGTGTG+TGG 0.525676 tig0019252:+21914 Msa1371870:intergenic
CGAATCCGGATAGGTTCCTA+TGG 0.527908 tig0019252:+21808 Msa1371870:intergenic
AAGTTAGCCTGTAGAGGTTG+AGG 0.533705 tig0019252:+21705 Msa1371870:intergenic
GAAGGACCGTTGATTTGTTG+AGG 0.537902 tig0019252:+21878 Msa1371870:intergenic
TTTCGAGCTCGAATCCGGAT+AGG 0.541300 tig0019252:+21799 Msa1371870:intergenic
AAATCAATCAGCTTTCATTG+AGG 0.543711 tig0019252:-21413 Msa1371870:CDS
CTACCACTCTCACAATCTCT+AGG 0.544505 tig0019252:+21615 Msa1371870:intergenic
AAAGAGATGCATACATTGGT+AGG 0.547128 tig0019252:+22581 Msa1371870:intergenic
ATAGGTTGTTCTGTCTGTAA+AGG 0.547458 tig0019252:+21663 Msa1371870:intergenic
AACCACCATAGGAACCTATC+CGG 0.549702 tig0019252:-21813 Msa1371870:CDS
GAATGATGACTCCACAAAAG+AGG 0.551407 tig0019252:-21466 Msa1371870:CDS
TTCAAGATTGGGAGTGAAGG+TGG 0.552771 tig0019252:-21939 Msa1371870:CDS
TTGATAATGGAGACTAAGCT+CGG 0.553649 tig0019252:+21773 Msa1371870:intergenic
TGTATTTGTAGGAAGATGGA+TGG 0.554275 tig0019252:-21995 Msa1371870:intron
ACTCCACAAAAGAGGCTACA+AGG 0.557185 tig0019252:-21458 Msa1371870:CDS
ATCAATCAGCTTTCATTGAG+GGG 0.560562 tig0019252:-21411 Msa1371870:CDS
GGTGTAGGAAGGAGTGGTGA+AGG 0.561219 tig0019252:-21522 Msa1371870:CDS
TGATATGGATGTTATAAGAG+AGG 0.567950 tig0019252:-24382 Msa1371870:CDS
CTCAAGAAATGGGTGTAGGA+AGG 0.571055 tig0019252:-21533 Msa1371870:CDS
GAAATGGGTGTAGGAAGGAG+TGG 0.573489 tig0019252:-21528 Msa1371870:CDS
AGAGGTGGACTTGAACAAGA+TGG 0.584582 tig0019252:-24364 Msa1371870:CDS
AATCCTAGAGATTGTGAGAG+TGG 0.585606 tig0019252:-21618 Msa1371870:CDS
GATTGTGAGAGTGGTAGTGA+TGG 0.586886 tig0019252:-21609 Msa1371870:CDS
TGAAGTAACTCTTCATCGGT+CGG 0.589383 tig0019252:+24441 Msa1371870:intergenic
GTAATGAAGTAACTCTTCAT+CGG 0.589466 tig0019252:+24437 Msa1371870:intergenic
TACAAAGGCAGAGCTCCTCA+TGG 0.591624 tig0019252:-22656 Msa1371870:CDS
ACTTGAACAAGATGGAACCT+TGG 0.595484 tig0019252:-24356 Msa1371870:CDS
CTATTCAAGATTGGGAGTGA+AGG 0.598153 tig0019252:-21942 Msa1371870:CDS
AACAACATCAAAACCACCAT+AGG 0.601748 tig0019252:-21824 Msa1371870:CDS
CGAGAAAGAGATGCATACAT+TGG 0.605781 tig0019252:+22577 Msa1371870:intergenic
TAATCAAAGTTAGCCTGTAG+AGG 0.606992 tig0019252:+21699 Msa1371870:intergenic
ATCCGGATAGGTTCCTATGG+TGG 0.609459 tig0019252:+21811 Msa1371870:intergenic
AAGACTCTTGTGTTCTACAA+AGG 0.611421 tig0019252:-22671 Msa1371870:CDS
ATGGAACCTTGGGACTTGCA+AGG 0.612104 tig0019252:-24345 Msa1371870:intron
GAAAGTACCCAACAGGGTCA+AGG 0.612193 tig0019252:-22781 Msa1371870:CDS
TGATAATGGAGACTAAGCTC+GGG 0.612739 tig0019252:+21774 Msa1371870:intergenic
CCACCTCAAGAAATGGGTGT+AGG 0.613141 tig0019252:-21537 Msa1371870:CDS
TATGGATGTTATAAGAGAGG+TGG 0.621522 tig0019252:-24379 Msa1371870:CDS
CTAATAGAGCAACAAATGCA+GGG 0.623645 tig0019252:-22757 Msa1371870:CDS
AGAGTGGTAGTGATGGTTTG+AGG 0.624748 tig0019252:-21602 Msa1371870:CDS
GTATTTGTAGGAAGATGGAT+GGG 0.647842 tig0019252:-21994 Msa1371870:intron
GTCGGATGAAATCGAAACCC+CGG 0.647907 tig0019252:+24459 Msa1371870:intergenic
GATCATTGCCATCTTCAAGA+CGG 0.649154 tig0019252:+22603 Msa1371870:intergenic
ATATTTCCTCAACAAATCAA+CGG 0.660597 tig0019252:-21884 Msa1371870:CDS
GTGGTATTTCTTCAGTCACA+AGG 0.667084 tig0019252:-22807 Msa1371870:CDS
AGTATGAGTTCTTCTAATGG+CGG 0.674587 tig0019252:-24489 Msa1371870:CDS
CTAATGGCGGTGTGCCACCG+GGG 0.679366 tig0019252:-24476 Msa1371870:CDS
TTTGTAGGAAGATGGATGGG+TGG 0.681897 tig0019252:-21991 Msa1371870:intron
GGTGAAGGAATGAATGAATG+GGG 0.696621 tig0019252:-21507 Msa1371870:CDS
GATCGACACCACAAAACGAG+TGG 0.701290 tig0019252:-22826 Msa1371870:CDS
AGGACAGAAAGTACCCAACA+GGG 0.718761 tig0019252:-22787 Msa1371870:CDS
GGATGAAATCGAAACCCCGG+TGG 0.740489 tig0019252:+24462 Msa1371860:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCTTTATTTTGAAT+GGG + tig0019252:22827-22846 Msa1371870:intergenic 10.0%
!!! TTTTTTTTCTTTATTTTGAA+TGG + tig0019252:22828-22847 Msa1371870:intergenic 10.0%
!!! CTAATTTTTTCTTATATTTT+TGG + tig0019252:23339-23358 Msa1371870:intergenic 10.0%
!!! TTTTTTCTTATATTTTTGGA+CGG + tig0019252:23335-23354 Msa1371870:intergenic 15.0%
!!! ACTCATTTTTGTTTATATTT+TGG - tig0019252:23417-23436 Msa1371870:intron 15.0%
!!! CTCATTTTTGTTTATATTTT+GGG - tig0019252:23418-23437 Msa1371870:intron 15.0%
!! TCATTACTATTTGAAAAAGA+AGG - tig0019252:21445-21464 Msa1371870:CDS 20.0%
!!! ATCCATATCAAATTTTTGAA+AGG + tig0019252:21474-21493 Msa1371870:intergenic 20.0%
!!! TCTTATTTAACTTTAGTGTT+TGG - tig0019252:21558-21577 Msa1371870:CDS 20.0%
!!! CTTATTTAACTTTAGTGTTT+GGG - tig0019252:21559-21578 Msa1371870:CDS 20.0%
!! TTACACTACATGTATATAAA+AGG - tig0019252:21659-21678 Msa1371870:CDS 20.0%
!! TACACTACATGTATATAAAA+GGG - tig0019252:21660-21679 Msa1371870:CDS 20.0%
!! CAGATAAACACAATAATATA+TGG + tig0019252:21732-21751 Msa1371870:intergenic 20.0%
!! TATCTGTATCCAAATTTAAT+TGG - tig0019252:21746-21765 Msa1371870:CDS 20.0%
!! CACTAAAAAAAAAACATGAA+AGG + tig0019252:21843-21862 Msa1371870:intergenic 20.0%
!!! CTTTCATGTTTTTTTTTTAG+TGG - tig0019252:21841-21860 Msa1371870:CDS 20.0%
!! TGCATAAAATATGTATGTTT+GGG + tig0019252:21880-21899 Msa1371870:intergenic 20.0%
!! ATGCATAAAATATGTATGTT+TGG + tig0019252:21881-21900 Msa1371870:intergenic 20.0%
!! TTAAACTAATGTAATCGATT+TGG + tig0019252:22279-22298 Msa1371870:intergenic 20.0%
!!! ATTTTTGTATCTCAAAACAT+TGG - tig0019252:22219-22238 Msa1371870:intron 20.0%
!! TCACATTAGATAAAACATTT+AGG + tig0019252:22468-22487 Msa1371870:intergenic 20.0%
!!! TTTTATCTAATGTGAACAAA+AGG - tig0019252:22473-22492 Msa1371870:intron 20.0%
!! TTTATCTAATGTGAACAAAA+GGG - tig0019252:22474-22493 Msa1371870:intron 20.0%
!! AATTGTGGATGAATTTAATA+TGG + tig0019252:22629-22648 Msa1371870:intergenic 20.0%
!! TCATGATAATATTTCAATTG+TGG + tig0019252:22644-22663 Msa1371870:intergenic 20.0%
!! AAATATTATCATGAAGAGTT+TGG - tig0019252:22650-22669 Msa1371870:CDS 20.0%
!!! ATACATTATGTTTAAGTTTC+TGG - tig0019252:22930-22949 Msa1371870:intron 20.0%
!! TTAGTAAACACTACAAATTA+TGG + tig0019252:22979-22998 Msa1371870:intergenic 20.0%
!!! TTTTTCTTATATTTTTGGAC+GGG + tig0019252:23334-23353 Msa1371870:intergenic 20.0%
!!! TTTTTGTTTATATTTTGGGA+CGG - tig0019252:23422-23441 Msa1371870:intron 20.0%
!! TGACAAAAGTTACAATTTAT+GGG + tig0019252:23611-23630 Msa1371870:intergenic 20.0%
!! TTGACAAAAGTTACAATTTA+TGG + tig0019252:23612-23631 Msa1371870:intergenic 20.0%
!! TATGAATGAAATGTATTTGT+AGG - tig0019252:23860-23879 Msa1371870:intron 20.0%
!!! ATAAGTTGTTTCACTATAAT+AGG + tig0019252:24224-24243 Msa1371870:intergenic 20.0%
! GTCCTTTCAAAAATTTGATA+TGG - tig0019252:21469-21488 Msa1371870:CDS 25.0%
! GTATCCAAATTTAATTGGTT+AGG - tig0019252:21751-21770 Msa1371870:CDS 25.0%
! TCATCCTAACCAATTAAATT+TGG + tig0019252:21758-21777 Msa1371870:intergenic 25.0%
! GCATAAAATATGTATGTTTG+GGG + tig0019252:21879-21898 Msa1371870:intergenic 25.0%
!!! TTTTAATTGTAAGAGACCTA+AGG + tig0019252:21989-22008 Msa1371870:intergenic 25.0%
!! ATTTTTGTATCTCAAAACGT+TGG + tig0019252:22253-22272 Msa1371870:intergenic 25.0%
! CCAGAAACTTAAACAAATTA+TGG + tig0019252:22956-22975 Msa1371870:intergenic 25.0%
!!! CCATAATTTGTTTAAGTTTC+TGG - tig0019252:22953-22972 Msa1371870:intron 25.0%
! AGGAATACTTACAAGAAAAT+TGG - tig0019252:23165-23184 Msa1371870:intron 25.0%
!!! TTTAAAATTTGTTACAGCGT+GGG + tig0019252:23518-23537 Msa1371870:intergenic 25.0%
!!! ATTTAAAATTTGTTACAGCG+TGG + tig0019252:23519-23538 Msa1371870:intergenic 25.0%
! ACAAAAGTTACAATTTATGG+GGG + tig0019252:23609-23628 Msa1371870:intergenic 25.0%
! GACAAAAGTTACAATTTATG+GGG + tig0019252:23610-23629 Msa1371870:intergenic 25.0%
!! GATAGATGTTTGACAATTTT+GGG + tig0019252:23671-23690 Msa1371870:intergenic 25.0%
!! TGATAGATGTTTGACAATTT+TGG + tig0019252:23672-23691 Msa1371870:intergenic 25.0%
! AAGAAAAACCTATTCAAGAT+TGG - tig0019252:23915-23934 Msa1371870:intron 25.0%
! AGAAAAACCTATTCAAGATT+GGG - tig0019252:23916-23935 Msa1371870:intron 25.0%
! ATATTTCCTCAACAAATCAA+CGG - tig0019252:23982-24001 Msa1371870:intron 25.0%
GTAATGAAGTAACTCTTCAT+CGG + tig0019252:21432-21451 Msa1371870:intergenic 30.0%
TGATATGGATGTTATAAGAG+AGG - tig0019252:21484-21503 Msa1371870:CDS 30.0%
TTGTTATGACAGTGCATAAA+AGG + tig0019252:21813-21832 Msa1371870:intergenic 30.0%
!!! CATGTTTTTTTTTTAGTGGC+CGG - tig0019252:21845-21864 Msa1371870:CDS 30.0%
!!! ATGTTTTTTTTTTAGTGGCC+GGG - tig0019252:21846-21865 Msa1371870:CDS 30.0%
CAGTTATTACAAAGCATGAA+AGG + tig0019252:21939-21958 Msa1371870:intergenic 30.0%
TATCTTGTCATCTTAACCTT+GGG + tig0019252:21962-21981 Msa1371870:intergenic 30.0%
TTATCTTGTCATCTTAACCT+TGG + tig0019252:21963-21982 Msa1371870:intergenic 30.0%
TTGAAAGTTTGGTAGGAAAA+GGG + tig0019252:22439-22458 Msa1371870:intergenic 30.0%
TTTGAAAGTTTGGTAGGAAA+AGG + tig0019252:22440-22459 Msa1371870:intergenic 30.0%
!!! ACCTTTTGAAACTTTTTCAG+AGG - tig0019252:22602-22621 Msa1371870:CDS 30.0%
! ACCTCTGAAAAAGTTTCAAA+AGG + tig0019252:22606-22625 Msa1371870:intergenic 30.0%
CTACGAACTCCTTTATAATT+TGG - tig0019252:22848-22867 Msa1371870:intron 30.0%
GATGTAGGACCAAATTATAA+AGG + tig0019252:22860-22879 Msa1371870:intergenic 30.0%
TTATTTATGCTAGTCGATGT+AGG + tig0019252:22875-22894 Msa1371870:intergenic 30.0%
TGCACAGAAAAATGTAAGAT+TGG - tig0019252:23018-23037 Msa1371870:intron 30.0%
! TAAGTTTTGCGAAATTCAAC+AGG + tig0019252:23639-23658 Msa1371870:intergenic 30.0%
ATGGAGGAAATTAACGAATA+GGG + tig0019252:23699-23718 Msa1371870:intergenic 30.0%
AGTGTCAAATAGGCAATTAA+CGG + tig0019252:23738-23757 Msa1371870:intergenic 30.0%
AAAAGTAATGCCACATCATA+GGG - tig0019252:23771-23790 Msa1371870:intron 30.0%
GAAATGTATTTGTAGGAAGA+TGG - tig0019252:23867-23886 Msa1371870:intron 30.0%
GAGGAAATATTGTTCATTTG+TGG + tig0019252:23972-23991 Msa1371870:intergenic 30.0%
! TTGATTTTCTCTTTGCATGA+AGG + tig0019252:24009-24028 Msa1371870:intergenic 30.0%
!!! AGTTTTGCAAGTGTTGATAA+TGG + tig0019252:24109-24128 Msa1371870:intergenic 30.0%
!! GAAAGCTGATTGATTTGATT+GGG + tig0019252:24449-24468 Msa1371870:intergenic 30.0%
!! TGAAAGCTGATTGATTTGAT+TGG + tig0019252:24450-24469 Msa1371870:intergenic 30.0%
AAATCAATCAGCTTTCATTG+AGG - tig0019252:24453-24472 Msa1371870:CDS 30.0%
AATCAATCAGCTTTCATTGA+GGG - tig0019252:24454-24473 Msa1371870:CDS 30.0%
AGTATGAGTTCTTCTAATGG+CGG - tig0019252:21377-21396 Msa1371870:CDS 35.0%
TATGGATGTTATAAGAGAGG+TGG - tig0019252:21487-21506 Msa1371870:CDS 35.0%
TTATGACAGTGCATAAAAGG+AGG + tig0019252:21810-21829 Msa1371870:intergenic 35.0%
!!! TGTTTTTTTTTTAGTGGCCG+GGG - tig0019252:21847-21866 Msa1371870:CDS 35.0%
GATGACAAGATAATTGCCTT+AGG - tig0019252:21970-21989 Msa1371870:CDS 35.0%
TTAGGCTCTGTTTGAAAGTT+TGG + tig0019252:22450-22469 Msa1371870:intergenic 35.0%
!! TATCATGAAGAGTTTGGTGT+TGG - tig0019252:22656-22675 Msa1371870:CDS 35.0%
TGTCTTGAGCTTTCATAGTT+AGG - tig0019252:22701-22720 Msa1371870:CDS 35.0%
GTCTTGAGCTTTCATAGTTA+GGG - tig0019252:22702-22721 Msa1371870:CDS 35.0%
GCAAATTCAAGATGTACGAA+AGG + tig0019252:22781-22800 Msa1371870:intergenic 35.0%
! TCGTACATCTTGAATTTGCT+TGG - tig0019252:22782-22801 Msa1371870:CDS 35.0%
! AAGAAATACCACTCGTTTTG+TGG + tig0019252:23051-23070 Msa1371870:intergenic 35.0%
ACTAATAGAGCAACAAATGC+AGG - tig0019252:23108-23127 Msa1371870:intron 35.0%
CTAATAGAGCAACAAATGCA+GGG - tig0019252:23109-23128 Msa1371870:intron 35.0%
AAGACTCTTGTGTTCTACAA+AGG - tig0019252:23195-23214 Msa1371870:intron 35.0%
AAAGAGATGCATACATTGGT+AGG + tig0019252:23288-23307 Msa1371870:intergenic 35.0%
CAATGTATGCATCTCTTTCT+CGG - tig0019252:23290-23309 Msa1371870:intron 35.0%
GGGGTAATTGACTATTTACT+CGG + tig0019252:23590-23609 Msa1371870:intergenic 35.0%
GATGGAGGAAATTAACGAAT+AGG + tig0019252:23700-23719 Msa1371870:intergenic 35.0%
GAAAAGTAATGCCACATCAT+AGG - tig0019252:23770-23789 Msa1371870:intron 35.0%
AAAGTAATGCCACATCATAG+GGG - tig0019252:23772-23791 Msa1371870:intron 35.0%
TGTATTTGTAGGAAGATGGA+TGG - tig0019252:23871-23890 Msa1371870:intron 35.0%
GTATTTGTAGGAAGATGGAT+GGG - tig0019252:23872-23891 Msa1371870:intron 35.0%
AACAACATCAAAACCACCAT+AGG - tig0019252:24042-24061 Msa1371870:intron 35.0%
!! TTGATAATGGAGACTAAGCT+CGG + tig0019252:24096-24115 Msa1371870:intergenic 35.0%
! TAATCAAAGTTAGCCTGTAG+AGG + tig0019252:24170-24189 Msa1371870:intergenic 35.0%
ATAGGTTGTTCTGTCTGTAA+AGG + tig0019252:24206-24225 Msa1371870:intergenic 35.0%
AGGTATCAAGTTTCAGAATC+TGG - tig0019252:24284-24303 Msa1371870:intron 35.0%
TGGTGAAGGAATGAATGAAT+GGG - tig0019252:24358-24377 Msa1371870:CDS 35.0%
ATCAATCAGCTTTCATTGAG+GGG - tig0019252:24455-24474 Msa1371870:CDS 35.0%
TGAAGTAACTCTTCATCGGT+CGG + tig0019252:21428-21447 Msa1371870:intergenic 40.0%
ACTTGAACAAGATGGAACCT+TGG - tig0019252:21510-21529 Msa1371870:CDS 40.0%
CTTGAACAAGATGGAACCTT+GGG - tig0019252:21511-21530 Msa1371870:CDS 40.0%
! ATTTTACCTTGCAAGTCCCA+AGG + tig0019252:21530-21549 Msa1371870:intergenic 40.0%
! TGAGCATAACTCAGTTGGTA+AGG + tig0019252:21907-21926 Msa1371870:intergenic 40.0%
TGCTTTGTAATAACTGCCCA+AGG - tig0019252:21943-21962 Msa1371870:CDS 40.0%
TTTAGGAGGGATGAGATTAG+AGG + tig0019252:22407-22426 Msa1371870:intergenic 40.0%
GCTCTGTTTGAAAGTTTGGT+AGG + tig0019252:22446-22465 Msa1371870:intergenic 40.0%
GCAACTCTACAAAATTACGC+AGG + tig0019252:22733-22752 Msa1371870:intergenic 40.0%
GTGGTATTTCTTCAGTCACA+AGG - tig0019252:23059-23078 Msa1371870:intron 40.0%
TATTAGTCCTTGACCCTGTT+GGG + tig0019252:23095-23114 Msa1371870:intergenic 40.0%
! CAATCAGTCTTTTGTCCATG+AGG + tig0019252:23228-23247 Msa1371870:intergenic 40.0%
CTCATGGACAAAAGACTGAT+TGG - tig0019252:23226-23245 Msa1371870:intron 40.0%
CATGAATACCGTCTTGAAGA+TGG - tig0019252:23255-23274 Msa1371870:intron 40.0%
GATCATTGCCATCTTCAAGA+CGG + tig0019252:23266-23285 Msa1371870:intergenic 40.0%
CGAGAAAGAGATGCATACAT+TGG + tig0019252:23292-23311 Msa1371870:intergenic 40.0%
!! GCATTACTTTTCTGACCATG+TGG + tig0019252:23762-23781 Msa1371870:intergenic 40.0%
AGTCAATAACCCCTATGATG+TGG + tig0019252:23784-23803 Msa1371870:intergenic 40.0%
CTTCACTCCCAATCTTGAAT+AGG + tig0019252:23926-23945 Msa1371870:intergenic 40.0%
CTATTCAAGATTGGGAGTGA+AGG - tig0019252:23924-23943 Msa1371870:intron 40.0%
TTGTGGATCTTGATTGTGTG+TGG + tig0019252:23955-23974 Msa1371870:intergenic 40.0%
!! TGATAATGGAGACTAAGCTC+GGG + tig0019252:24095-24114 Msa1371870:intergenic 40.0%
AATCCTAGAGATTGTGAGAG+TGG - tig0019252:24248-24267 Msa1371870:intron 40.0%
! TCAGAATCTGGCATTGAAGT+TGG - tig0019252:24296-24315 Msa1371870:intron 40.0%
TTGTGAACCACCTCAAGAAA+TGG - tig0019252:24322-24341 Msa1371870:intron 40.0%
TGTGAACCACCTCAAGAAAT+GGG - tig0019252:24323-24342 Msa1371870:intron 40.0%
GTGGTGAAGGAATGAATGAA+TGG - tig0019252:24357-24376 Msa1371870:CDS 40.0%
GGTGAAGGAATGAATGAATG+GGG - tig0019252:24359-24378 Msa1371870:CDS 40.0%
ATGAATGGGGAATGCTTGAT+AGG - tig0019252:24372-24391 Msa1371870:CDS 40.0%
GAATGATGACTCCACAAAAG+AGG - tig0019252:24400-24419 Msa1371870:CDS 40.0%
! AAACCTTGTAGCCTCTTTTG+TGG + tig0019252:24414-24433 Msa1371870:intergenic 40.0%
AAAAGAGGCTACAAGGTTTG+AGG - tig0019252:24415-24434 Msa1371870:CDS 40.0%
!!! AGATGGATTTTTGGGGCTAT+GGG - tig0019252:24480-24499 Msa1371870:CDS 40.0%
! AGAGGTGGACTTGAACAAGA+TGG - tig0019252:21502-21521 Msa1371870:CDS 45.0%
! TATGTTTGGGGTTCAAACCC+CGG + tig0019252:21867-21886 Msa1371870:intergenic 45.0%
TCTCGTGAGCATAACTCAGT+TGG + tig0019252:21912-21931 Msa1371870:intergenic 45.0%
GAAAAGGGAGTGGAGAGTTT+AGG + tig0019252:22424-22443 Msa1371870:intergenic 45.0%
AGTTTGGTAGGAAAAGGGAG+TGG + tig0019252:22434-22453 Msa1371870:intergenic 45.0%
!! AAGGACAGAAAGTACCCAAC+AGG - tig0019252:23078-23097 Msa1371870:intron 45.0%
!! AGGACAGAAAGTACCCAACA+GGG - tig0019252:23079-23098 Msa1371870:intron 45.0%
CTATTAGTCCTTGACCCTGT+TGG + tig0019252:23096-23115 Msa1371870:intergenic 45.0%
! GAGCAACAAATGCAGGGTTT+TGG - tig0019252:23115-23134 Msa1371870:intron 45.0%
CAGGAAGAGACAAGTGCATT+AGG - tig0019252:23145-23164 Msa1371870:intron 45.0%
TTCCTCCATCAACATGCTGA+TGG - tig0019252:23710-23729 Msa1371870:intron 45.0%
TCCTCCATCAACATGCTGAT+GGG - tig0019252:23711-23730 Msa1371870:intron 45.0%
ACCATGTGGCAGTGTCAAAT+AGG + tig0019252:23748-23767 Msa1371870:intergenic 45.0%
TTTGTAGGAAGATGGATGGG+TGG - tig0019252:23875-23894 Msa1371870:intron 45.0%
TTCAAGATTGGGAGTGAAGG+TGG - tig0019252:23927-23946 Msa1371870:intron 45.0%
!! GAAGGACCGTTGATTTGTTG+AGG + tig0019252:23991-24010 Msa1371870:intergenic 45.0%
AACCACCATAGGAACCTATC+CGG - tig0019252:24053-24072 Msa1371870:intron 45.0%
! AAGTTAGCCTGTAGAGGTTG+AGG + tig0019252:24164-24183 Msa1371870:intergenic 45.0%
CTACCACTCTCACAATCTCT+AGG + tig0019252:24254-24273 Msa1371870:intergenic 45.0%
! GATTGTGAGAGTGGTAGTGA+TGG - tig0019252:24257-24276 Msa1371870:intron 45.0%
! AGAGTGGTAGTGATGGTTTG+AGG - tig0019252:24264-24283 Msa1371870:intron 45.0%
CTTCCTACACCCATTTCTTG+AGG + tig0019252:24335-24354 Msa1371870:intergenic 45.0%
CTCAAGAAATGGGTGTAGGA+AGG - tig0019252:24333-24352 Msa1371870:intron 45.0%
ACTCCACAAAAGAGGCTACA+AGG - tig0019252:24408-24427 Msa1371870:CDS 45.0%
!! TGAGGGGAGAGATGGATTTT+TGG - tig0019252:24471-24490 Msa1371870:CDS 45.0%
!! GAGGGGAGAGATGGATTTTT+GGG - tig0019252:24472-24491 Msa1371870:CDS 45.0%
!! AGGGGAGAGATGGATTTTTG+GGG - tig0019252:24473-24492 Msa1371870:CDS 45.0%
!!! GAGATGGATTTTTGGGGCTA+TGG - tig0019252:24479-24498 Msa1371870:CDS 45.0%
!! TGAATTTATAATAATAAAAA+AGG + tig0019252:22557-22576 Msa1371870:intergenic 5.0%
!!! ATTAAAATATTTATTTTCAT+TGG + tig0019252:22900-22919 Msa1371870:intergenic 5.0%
GTCGGATGAAATCGAAACCC+CGG + tig0019252:21410-21429 Msa1371870:intergenic 50.0%
ATGGAACCTTGGGACTTGCA+AGG - tig0019252:21521-21540 Msa1371870:CDS 50.0%
AGGGAGTGGAGAGTTTAGGA+GGG + tig0019252:22420-22439 Msa1371870:intergenic 50.0%
AAGGGAGTGGAGAGTTTAGG+AGG + tig0019252:22421-22440 Msa1371870:intergenic 50.0%
GATCGACACCACAAAACGAG+TGG - tig0019252:23040-23059 Msa1371870:intron 50.0%
!! GAAAGTACCCAACAGGGTCA+AGG - tig0019252:23085-23104 Msa1371870:intron 50.0%
!!! GCAGGGTTTTGGAAAGCTAC+AGG - tig0019252:23126-23145 Msa1371870:intron 50.0%
TACAAAGGCAGAGCTCCTCA+TGG - tig0019252:23210-23229 Msa1371870:intron 50.0%
CCTCCATCAACATGCTGATG+GGG - tig0019252:23712-23731 Msa1371870:intron 50.0%
GCCTATTTGACACTGCCACA+TGG - tig0019252:23744-23763 Msa1371870:intron 50.0%
AAGATGGATGGGTGGTATGC+AGG - tig0019252:23883-23902 Msa1371870:intron 50.0%
AGATGGATGGGTGGTATGCA+GGG - tig0019252:23884-23903 Msa1371870:intron 50.0%
ATCCGGATAGGTTCCTATGG+TGG + tig0019252:24058-24077 Msa1371870:intergenic 50.0%
CGAATCCGGATAGGTTCCTA+TGG + tig0019252:24061-24080 Msa1371870:intergenic 50.0%
TTTCGAGCTCGAATCCGGAT+AGG + tig0019252:24070-24089 Msa1371870:intergenic 50.0%
CCTACACCCATTTCTTGAGG+TGG + tig0019252:24332-24351 Msa1371870:intergenic 50.0%
CCACCTCAAGAAATGGGTGT+AGG - tig0019252:24329-24348 Msa1371870:intron 50.0%
GAAATGGGTGTAGGAAGGAG+TGG - tig0019252:24338-24357 Msa1371870:intron 50.0%
GCTTTCATTGAGGGGAGAGA+TGG - tig0019252:24463-24482 Msa1371870:CDS 50.0%
TTCTAATGGCGGTGTGCCAC+CGG - tig0019252:21388-21407 Msa1371870:CDS 55.0%
GGATGAAATCGAAACCCCGG+TGG + tig0019252:21407-21426 Msa1371870:intergenic 55.0%
! CCCCATCAGCATGTTGATGG+AGG + tig0019252:23715-23734 Msa1371870:intergenic 55.0%
!! GGGCTTTTCGAGCTCGAATC+CGG + tig0019252:24075-24094 Msa1371870:intergenic 55.0%
TAGAGGTTGAGGCTGGGGTT+GGG + tig0019252:24153-24172 Msa1371870:intergenic 55.0%
AGCCTGTAGAGGTTGAGGCT+GGG + tig0019252:24159-24178 Msa1371870:intergenic 55.0%
TAGCCTGTAGAGGTTGAGGC+TGG + tig0019252:24160-24179 Msa1371870:intergenic 55.0%
GGTGTAGGAAGGAGTGGTGA+AGG - tig0019252:24344-24363 Msa1371870:intron 55.0%
TCTAATGGCGGTGTGCCACC+GGG - tig0019252:21389-21408 Msa1371870:CDS 60.0%
CGGCCCCATCAGCATGTTGA+TGG + tig0019252:23718-23737 Msa1371870:intergenic 60.0%
GTAGAGGTTGAGGCTGGGGT+TGG + tig0019252:24154-24173 Msa1371870:intergenic 60.0%
ACCCCAGCCTCAACCTCTAC+AGG - tig0019252:24154-24173 Msa1371870:intron 60.0%
GCCTGTAGAGGTTGAGGCTG+GGG + tig0019252:24158-24177 Msa1371870:intergenic 60.0%
CTAATGGCGGTGTGCCACCG+GGG - tig0019252:21390-21409 Msa1371870:CDS 65.0%
GTTGAGGCTGGGGTTGGGAG+TGG + tig0019252:24148-24167 Msa1371870:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0019252 gene 21377 24511 21377 ID=Msa1371870;Name=Msa1371870
tig0019252 mRNA 21377 24511 21377 ID=Msa1371870-mRNA-1;Parent=Msa1371870;Name=Msa1371870-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|360
tig0019252 exon 24346 24511 24346 ID=Msa1371870-mRNA-1:exon:2483;Parent=Msa1371870-mRNA-1
tig0019252 exon 22577 22863 22577 ID=Msa1371870-mRNA-1:exon:2482;Parent=Msa1371870-mRNA-1
tig0019252 exon 21377 22006 21377 ID=Msa1371870-mRNA-1:exon:2481;Parent=Msa1371870-mRNA-1
tig0019252 CDS 24346 24511 24346 ID=Msa1371870-mRNA-1:cds;Parent=Msa1371870-mRNA-1
tig0019252 CDS 22577 22863 22577 ID=Msa1371870-mRNA-1:cds;Parent=Msa1371870-mRNA-1
tig0019252 CDS 21377 22006 21377 ID=Msa1371870-mRNA-1:cds;Parent=Msa1371870-mRNA-1
Gene Sequence

>Msa1371870

AGTATGAGTTCTTCTAATGGCGGTGTGCCACCGGGGTTTCGATTTCATCCGACCGATGAAGAGTTACTTCATTACTATTTGAAAAAGAAGGTGTCCTTTCAAAAATTTGATATGGATGTTATAAGAGAGGTGGACTTGAACAAGATGGAACCTTGGGACTTGCAAGAAAAATGTAAGATTGGATCGACACCACAAAACGAGTGGTATTTCTTCAGTCACAAGGACAGAAAGTACCCAACAGGGTCAAGGACTAATAGAGCAACAAATGCAGGGTTTTGGAAAGCTACAGGAAGAGACAAGTGCATTAGGAATACTTACAAGAAAATTGGAATGAGAAAGACTCTTGTGTTCTACAAAGGCAGAGCTCCTCATGGACAAAAGACTGATTGGATTATGCATGAATACCGTCTTGAAGATGGCAATGATCCTACCAATGTATGCATCTCTTTCTCGGAAGATGGATGGGTGGTATGCAGGGTGTTCAAGAAGAAAAACCTATTCAAGATTGGGAGTGAAGGTGGATCCACACACAATCAAGATCCACAAATGAACAATATTTCCTCAACAAATCAACGGTCCTTCATGCAAAGAGAAAATCAATACTTACTACATCAACAACATCAAAACCACCATAGGAACCTATCCGGATTCGAGCTCGAAAAGCCCGAGCTTAGTCTCCATTATCAACACTTGCAAAACTCTCAATACTCAATCTTCCACTCCCAACCCCAGCCTCAACCTCTACAGGCTAACTTTGATTACTCATATGCATCACCTTTACAGACAGAACAACCTATTATAGTGAAACAACTTATGACAAATCCTAGAGATTGTGAGAGTGGTAGTGATGGTTTGAGGTATCAAGTTTCAGAATCTGGCATTGAAGTTGGCTCTTGTGAACCACCTCAAGAAATGGGTGTAGGAAGGAGTGGTGAAGGAATGAATGAATGGGGAATGCTTGATAGGCTTGTGAATGATGACTCCACAAAAGAGGCTACAAGGTTTGAGGATGCAAATCCCAATCAAATCAATCAGCTTTCATTGAGGGGAGAGATGGATTTTTGGGGCTATGGGAAACAATGA
Protein sequence

>Msa1371870

SMSSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQEKCKIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNTYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPTNVCISFSEDGWVVCRVFKKKNLFKIGSEGGSTHNQDPQMNNISSTNQRSFMQRENQYLLHQQHQNHHRNLSGFELEKPELSLHYQHLQNSQYSIFHSQPQPQPLQANFDYSYASPLQTEQPIIVKQLMTNPRDCESGSDGLRYQVSESGIEVGSCEPPQEMGVGRSGEGMNEWGMLDRLVNDDSTKEATRFEDANPNQINQLSLRGEMDFWGYGKQ*