AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0540100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540100 MtrunA17_Chr4g0017921 98.870 354 3 1 1 353 1 354 0.0 735
Msa0540100 MtrunA17_Chr2g0309331 79.739 153 29 2 8 158 10 162 2.20e-88 269
Msa0540100 MtrunA17_Chr8g0346001 73.494 166 32 1 8 161 15 180 1.62e-87 270
Msa0540100 MtrunA17_Chr5g0405211 72.956 159 42 1 1 158 1 159 1.61e-84 259
Msa0540100 MtrunA17_Chr8g0372121 66.102 177 57 2 8 181 6 182 8.45e-81 249
Msa0540100 MtrunA17_Chr4g0056541 75.497 151 36 1 8 157 7 157 1.18e-80 250
Msa0540100 MtrunA17_Chr4g0018391 73.510 151 39 1 8 157 7 157 1.36e-80 249
Msa0540100 MtrunA17_Chr5g0398971 45.541 314 138 7 8 317 7 291 4.58e-78 243
Msa0540100 MtrunA17_Chr1g0200561 59.391 197 72 4 8 196 19 215 4.59e-75 235
Msa0540100 MtrunA17_Chr6g0481091 57.051 156 63 2 7 159 5 159 6.97e-60 192
Msa0540100 MtrunA17_Chr2g0316971 58.385 161 57 3 5 158 20 177 5.22e-59 195
Msa0540100 MtrunA17_Chr3g0091921 61.688 154 51 3 8 156 16 166 9.14e-59 192
Msa0540100 MtrunA17_Chr2g0309891 55.556 153 63 2 8 156 6 157 1.24e-58 193
Msa0540100 MtrunA17_Chr6g0484441 60.000 150 56 2 8 156 5 151 1.39e-58 192
Msa0540100 MtrunA17_Chr4g0060931 57.143 168 58 3 8 170 17 175 2.49e-58 192
Msa0540100 MtrunA17_Chr1g0147421 61.438 153 52 4 8 156 27 176 2.98e-58 192
Msa0540100 MtrunA17_Chr3g0139331 57.895 152 58 3 8 156 11 159 2.99e-57 189
Msa0540100 MtrunA17_Chr5g0433781 51.124 178 76 5 7 176 5 179 4.14e-57 196
Msa0540100 MtrunA17_Chr4g0042561 41.877 277 134 10 2 264 3 266 4.72e-56 184
Msa0540100 MtrunA17_Chr3g0109821 49.198 187 86 5 7 187 5 188 5.72e-56 193
Msa0540100 MtrunA17_Chr7g0253011 60.127 158 51 4 8 156 17 171 1.07e-55 186
Msa0540100 MtrunA17_Chr6g0453451 57.233 159 60 2 8 161 20 175 1.40e-55 184
Msa0540100 MtrunA17_Chr7g0252971 47.027 185 79 3 1 169 1 182 8.02e-55 183
Msa0540100 MtrunA17_Chr5g0417791 54.037 161 64 2 8 161 3 160 9.02e-55 180
Msa0540100 MtrunA17_Chr2g0318081 55.263 152 62 2 8 156 16 164 2.45e-54 182
Msa0540100 MtrunA17_Chr1g0183741 54.902 153 63 3 6 156 8 156 7.39e-54 178
Msa0540100 MtrunA17_Chr2g0318101 40.800 250 105 7 8 219 15 259 2.29e-53 179
Msa0540100 MtrunA17_Chr2g0312321 40.400 250 125 7 1 244 4 235 2.74e-53 178
Msa0540100 MtrunA17_Chr7g0217721 51.031 194 68 5 11 181 22 211 4.83e-53 178
Msa0540100 MtrunA17_Chr6g0461661 53.459 159 64 4 8 159 18 173 9.50e-53 178
Msa0540100 MtrunA17_Chr7g0261411 54.967 151 62 3 6 154 8 154 1.46e-52 175
Msa0540100 MtrunA17_Chr8g0359921 53.896 154 63 2 8 156 14 164 3.55e-52 176
Msa0540100 MtrunA17_Chr7g0214071 56.494 154 56 4 8 157 15 161 5.41e-52 173
Msa0540100 MtrunA17_Chr5g0400461 39.600 250 140 4 6 248 4 249 9.40e-52 174
Msa0540100 MtrunA17_Chr3g0124761 51.553 161 68 3 3 157 2 158 6.25e-51 171
Msa0540100 MtrunA17_Chr3g0130731 52.564 156 64 3 8 157 7 158 1.57e-50 170
Msa0540100 MtrunA17_Chr7g0217711 62.500 128 45 1 10 137 21 145 8.47e-50 164
Msa0540100 MtrunA17_Chr6g0453131 50.617 162 64 4 10 158 17 175 1.58e-49 170
Msa0540100 MtrunA17_Chr8g0361731 45.503 189 81 5 10 183 16 197 2.27e-49 170
Msa0540100 MtrunA17_Chr3g0144271 56.291 151 54 5 7 153 22 164 5.38e-49 170
Msa0540100 MtrunA17_Chr8g0384721 50.318 157 67 3 8 157 7 159 8.53e-49 166
Msa0540100 MtrunA17_Chr5g0417001 49.390 164 67 3 8 158 14 174 9.46e-49 168
Msa0540100 MtrunA17_Chr1g0197351 52.201 159 66 3 10 159 44 201 9.94e-49 170
Msa0540100 MtrunA17_Chr4g0047841 46.927 179 64 5 8 158 15 190 1.41e-48 167
Msa0540100 MtrunA17_Chr4g0054791 51.572 159 66 4 6 156 4 159 2.03e-48 166
Msa0540100 MtrunA17_Chr5g0428991 53.548 155 66 3 8 158 25 177 3.20e-48 172
Msa0540100 MtrunA17_Chr7g0263931 50.633 158 66 3 8 156 11 165 7.39e-48 164
Msa0540100 MtrunA17_Chr3g0130101 50.331 151 71 2 10 157 9 158 1.26e-47 164
Msa0540100 MtrunA17_Chr2g0326361 50.000 164 70 3 2 156 8 168 2.45e-47 163
Msa0540100 MtrunA17_Chr3g0128111 50.658 152 69 4 11 158 45 194 9.17e-47 159
Msa0540100 MtrunA17_Chr3g0128151 50.641 156 71 3 7 158 21 174 1.62e-46 166
Msa0540100 MtrunA17_Chr8g0364791 50.000 154 67 3 10 157 8 157 3.54e-46 163
Msa0540100 MtrunA17_Chr3g0092671 50.000 150 71 3 10 156 7 155 9.92e-46 163
Msa0540100 MtrunA17_Chr8g0384201 49.351 154 68 3 10 157 8 157 7.83e-45 160
Msa0540100 MtrunA17_Chr1g0197361 49.333 150 72 3 10 156 10 158 8.86e-45 162
Msa0540100 MtrunA17_Chr1g0201021 49.333 150 72 2 10 156 21 169 9.40e-45 161
Msa0540100 MtrunA17_Chr4g0076731 46.753 154 77 3 8 159 54 204 2.64e-44 157
Msa0540100 MtrunA17_Chr5g0442771 34.091 264 126 7 8 228 18 276 4.26e-43 151
Msa0540100 MtrunA17_Chr4g0038751 46.471 170 83 4 10 176 17 181 7.07e-43 150
Msa0540100 MtrunA17_Chr2g0311651 34.137 249 131 8 8 227 21 265 3.26e-40 144
Msa0540100 MtrunA17_Chr2g0311661 36.283 226 107 8 8 204 20 237 1.20e-39 142
Msa0540100 MtrunA17_Chr8g0385991 44.134 179 82 6 8 176 14 184 4.29e-39 138
Msa0540100 MtrunA17_Chr3g0131911 42.945 163 75 4 8 157 14 171 4.28e-36 131
Msa0540100 MtrunA17_Chr8g0345671 47.368 152 73 5 5 153 8 155 2.29e-35 133
Msa0540100 MtrunA17_Chr3g0113001 56.198 121 39 4 52 161 4 121 9.73e-35 129
Msa0540100 MtrunA17_Chr2g0321741 41.212 165 83 5 22 181 1 156 5.08e-34 128
Msa0540100 MtrunA17_Chr2g0321631 41.071 168 83 6 6 160 2 166 1.81e-32 121
Msa0540100 MtrunA17_Chr8g0345691 46.711 152 68 6 8 153 12 156 3.69e-32 124
Msa0540100 MtrunA17_Chr4g0026141 38.788 165 86 5 9 161 6 167 4.34e-30 115
Msa0540100 MtrunA17_Chr3g0113031 57.143 105 34 3 74 170 3 104 1.12e-29 114
Msa0540100 MtrunA17_Chr8g0345711 40.698 172 81 7 1 154 5 173 6.32e-29 110
Msa0540100 MtrunA17_Chr4g0050701 36.875 160 79 4 8 156 11 159 1.66e-28 109
Msa0540100 MtrunA17_Chr8g0345731 41.935 155 78 6 8 156 24 172 4.14e-25 100
Msa0540100 MtrunA17_Chr7g0266701 34.940 166 96 4 8 161 4 169 9.12e-25 101
Msa0540100 MtrunA17_Chr7g0243371 58.667 75 29 1 64 136 17 91 2.40e-24 96.3
Msa0540100 MtrunA17_Chr8g0384351 35.593 177 92 7 2 178 4 158 5.72e-24 97.4
Msa0540100 MtrunA17_Chr8g0345721 38.182 165 67 6 11 141 38 201 6.17e-24 97.8
Msa0540100 MtrunA17_Chr8g0345741 47.899 119 57 4 19 134 2 118 1.09e-23 95.5
Msa0540100 MtrunA17_Chr8g0345701 39.189 148 69 6 4 134 3 146 2.44e-21 89.7
Msa0540100 MtrunA17_Chr3g0130321 31.953 169 90 6 8 160 7 166 7.15e-18 81.3
Msa0540100 MtrunA17_Chr7g0251651 31.884 138 87 6 1 136 11 143 5.94e-12 63.9
Msa0540100 MtrunA17_Chr3g0113011 62.222 45 17 0 9 53 20 64 1.28e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540100 AT4G10350.1 59.840 376 89 13 2 352 3 341 6.15e-143 408
Msa0540100 AT1G33280.1 56.389 360 89 11 1 349 1 303 4.09e-127 367
Msa0540100 AT4G10350.2 54.769 325 85 13 53 352 7 294 2.93e-103 306
Msa0540100 AT1G79580.3 79.355 155 31 1 8 161 17 171 8.42e-89 271
Msa0540100 AT1G79580.5 79.355 155 31 1 8 161 17 171 8.42e-89 271
Msa0540100 AT1G79580.4 79.355 155 31 1 8 161 17 171 8.42e-89 271
Msa0540100 AT1G79580.2 79.355 155 31 1 8 161 17 171 8.42e-89 271
Msa0540100 AT1G79580.1 79.355 155 31 1 8 161 17 171 8.42e-89 271
Msa0540100 AT1G32770.1 73.810 168 31 2 8 162 16 183 2.20e-87 268
Msa0540100 AT2G46770.1 68.824 170 37 1 8 161 16 185 2.18e-84 260
Msa0540100 AT4G36160.1 76.159 151 35 1 8 157 10 160 1.82e-82 256
Msa0540100 AT4G36160.3 76.159 151 35 1 8 157 10 160 1.82e-82 256
Msa0540100 AT4G36160.2 75.658 152 36 1 7 157 13 164 1.98e-82 256
Msa0540100 AT2G18060.3 73.684 152 39 1 7 157 8 159 1.43e-81 253
Msa0540100 AT2G18060.1 73.684 152 39 1 7 157 8 159 1.43e-81 253
Msa0540100 AT1G12260.2 57.021 235 85 7 8 226 7 241 9.29e-81 250
Msa0540100 AT3G61910.1 67.647 170 39 2 8 161 11 180 1.89e-80 249
Msa0540100 AT1G12260.1 57.082 233 84 7 8 224 7 239 2.17e-79 248
Msa0540100 AT1G62700.1 52.713 258 88 7 8 237 7 258 1.64e-78 246
Msa0540100 AT1G62700.2 52.713 258 88 7 8 237 7 258 1.64e-78 246
Msa0540100 AT5G66300.1 70.130 154 44 2 7 158 11 164 5.62e-77 239
Msa0540100 AT5G62380.2 70.199 151 44 1 8 157 7 157 1.18e-75 237
Msa0540100 AT5G62380.1 70.199 151 44 1 8 157 7 157 1.18e-75 237
Msa0540100 AT1G71930.2 67.105 152 49 1 6 156 7 158 1.74e-74 233
Msa0540100 AT1G71930.1 67.105 152 49 1 6 156 7 158 1.74e-74 233
Msa0540100 AT3G18400.1 60.256 156 57 2 8 161 5 157 2.55e-62 202
Msa0540100 AT2G24430.2 60.377 159 56 3 7 161 15 170 1.10e-61 200
Msa0540100 AT2G24430.1 60.377 159 56 3 7 161 15 170 1.10e-61 200
Msa0540100 AT3G17730.1 58.333 156 61 3 7 159 5 159 1.13e-61 198
Msa0540100 AT5G07680.2 44.765 277 122 9 8 269 3 263 1.22e-61 200
Msa0540100 AT5G61430.1 43.972 282 122 10 8 269 16 281 1.85e-61 200
Msa0540100 AT5G07680.1 44.765 277 122 9 8 269 17 277 1.87e-61 200
Msa0540100 AT5G39610.1 54.255 188 70 5 8 188 20 198 9.24e-59 192
Msa0540100 AT3G15170.1 57.500 160 56 4 8 159 20 175 1.36e-56 187
Msa0540100 AT5G17260.1 57.143 154 61 3 7 156 5 157 3.21e-56 190
Msa0540100 AT1G54330.1 57.237 152 60 2 7 156 5 153 7.70e-56 184
Msa0540100 AT5G18270.2 58.599 157 56 4 8 158 21 174 1.11e-55 185
Msa0540100 AT1G76420.1 53.977 176 71 4 7 178 21 190 1.13e-55 185
Msa0540100 AT3G29035.1 59.868 152 53 2 8 154 24 172 1.55e-55 184
Msa0540100 AT1G65910.1 55.484 155 65 2 8 159 6 159 1.60e-55 192
Msa0540100 AT5G53950.1 56.098 164 62 3 8 164 17 177 1.93e-55 186
Msa0540100 AT5G18270.1 57.962 157 57 4 8 158 21 174 2.09e-55 184
Msa0540100 AT3G03200.1 57.143 154 61 3 7 156 5 157 3.38e-55 188
Msa0540100 AT1G69490.1 50.000 170 75 2 3 165 4 170 9.19e-55 181
Msa0540100 AT3G04060.1 59.615 156 52 5 8 156 20 171 4.82e-54 181
Msa0540100 AT3G10480.1 53.704 162 70 2 2 159 21 181 2.54e-53 182
Msa0540100 AT3G04070.2 50.000 166 65 3 6 156 8 170 6.15e-53 178
Msa0540100 AT3G10480.2 54.037 161 70 2 2 159 21 180 6.84e-53 181
Msa0540100 AT4G27410.2 52.597 154 67 2 8 158 14 164 9.17e-53 176
Msa0540100 AT3G10490.1 52.469 162 72 2 2 159 21 181 1.09e-52 174
Msa0540100 AT3G12977.1 37.329 292 148 10 1 287 11 272 1.14e-52 176
Msa0540100 AT3G15500.1 52.288 153 67 2 8 157 14 163 5.47e-52 175
Msa0540100 AT3G10490.2 52.469 162 72 2 2 159 21 181 2.08e-51 177
Msa0540100 AT5G04410.1 53.947 152 66 2 8 156 9 159 2.63e-51 179
Msa0540100 AT1G61110.1 51.515 165 61 3 8 156 16 177 2.87e-51 173
Msa0540100 AT1G52890.1 51.948 154 68 2 8 158 14 164 3.92e-51 173
Msa0540100 AT3G10500.1 54.605 152 65 3 8 156 9 159 7.16e-51 178
Msa0540100 AT1G56010.2 49.693 163 72 3 1 156 12 171 3.26e-50 171
Msa0540100 AT3G04070.1 45.604 182 65 3 6 156 8 186 4.85e-50 171
Msa0540100 AT5G63790.2 52.532 158 63 4 8 157 60 213 5.80e-50 170
Msa0540100 AT1G77450.1 48.795 166 75 3 2 161 4 165 5.92e-50 168
Msa0540100 AT5G63790.1 52.532 158 63 4 8 157 50 203 6.21e-50 169
Msa0540100 AT1G01720.1 50.955 157 66 3 8 157 7 159 8.15e-50 169
Msa0540100 AT4G27410.3 48.810 168 69 4 8 158 14 181 4.63e-49 167
Msa0540100 AT5G08790.1 51.899 158 64 4 8 157 7 160 9.31e-49 166
Msa0540100 AT3G10480.3 45.361 194 70 2 2 159 21 214 1.15e-48 171
Msa0540100 AT5G24590.2 50.000 166 78 3 4 165 9 173 1.71e-48 169
Msa0540100 AT4G28530.1 50.595 168 59 5 8 156 10 172 3.83e-48 166
Msa0540100 AT3G15510.1 41.667 216 101 5 12 210 21 228 5.05e-48 166
Msa0540100 AT5G46590.1 50.955 157 71 3 8 159 6 161 5.43e-48 164
Msa0540100 AT4G17980.1 49.686 159 72 3 5 156 3 160 1.17e-47 162
Msa0540100 AT1G33060.1 51.299 154 69 3 7 156 23 174 1.33e-47 171
Msa0540100 AT1G33060.2 51.299 154 69 3 7 156 23 174 1.48e-47 171
Msa0540100 AT2G33480.2 51.656 151 66 2 8 157 15 159 1.52e-47 162
Msa0540100 AT4G35580.1 51.634 153 68 3 8 156 9 159 3.01e-47 167
Msa0540100 AT4G35580.3 51.634 153 68 3 8 156 9 159 3.47e-47 167
Msa0540100 AT4G35580.2 51.634 153 68 3 8 156 9 159 3.56e-47 167
Msa0540100 AT4G17980.2 50.641 156 69 3 8 156 6 160 3.76e-47 162
Msa0540100 AT5G39820.1 44.944 178 67 4 8 158 20 193 4.04e-47 163
Msa0540100 AT1G26870.1 37.050 278 138 8 10 267 18 278 7.96e-47 164
Msa0540100 AT5G46590.2 55.970 134 57 2 8 140 6 138 1.14e-46 160
Msa0540100 AT2G33480.1 50.327 153 67 2 8 157 15 161 1.20e-46 160
Msa0540100 AT3G49530.2 45.810 179 92 4 4 178 9 186 2.60e-46 162
Msa0540100 AT3G49530.1 45.810 179 92 4 4 178 9 186 5.63e-46 163
Msa0540100 AT2G27300.1 39.303 201 112 4 1 201 7 197 1.41e-45 159
Msa0540100 AT5G13180.1 50.000 156 64 4 8 157 14 161 5.46e-45 155
Msa0540100 AT5G64060.1 47.097 155 78 2 8 159 6 159 2.41e-44 156
Msa0540100 AT2G02450.1 47.682 151 74 3 8 156 51 198 3.03e-44 156
Msa0540100 AT2G02450.2 47.682 151 74 3 8 156 51 198 3.91e-44 157
Msa0540100 AT2G43000.1 46.358 151 74 3 10 156 20 167 1.12e-43 152
Msa0540100 AT1G52880.1 50.307 163 61 4 12 158 21 179 1.88e-43 153
Msa0540100 AT1G32510.1 42.347 196 98 5 8 190 6 199 1.06e-42 150
Msa0540100 AT1G34190.1 44.667 150 79 2 10 156 18 166 5.21e-42 154
Msa0540100 AT1G34180.3 43.333 150 81 2 10 156 18 166 3.55e-41 150
Msa0540100 AT2G17040.1 40.625 192 103 5 10 195 8 194 4.19e-41 145
Msa0540100 AT1G34180.1 43.333 150 81 2 10 156 18 166 1.11e-40 150
Msa0540100 AT5G22290.1 45.333 150 77 2 8 157 21 165 1.25e-40 146
Msa0540100 AT5G09330.5 47.368 152 72 3 10 156 8 156 1.30e-40 149
Msa0540100 AT5G09330.2 47.368 152 72 3 10 156 8 156 1.30e-40 149
Msa0540100 AT5G09330.4 47.368 152 72 3 10 156 8 156 1.30e-40 149
Msa0540100 AT5G09330.3 47.368 152 72 3 10 156 8 156 1.30e-40 149
Msa0540100 AT5G09330.1 47.368 152 72 3 10 156 8 156 1.30e-40 149
Msa0540100 AT1G34180.4 40.994 161 81 3 10 156 18 178 5.73e-40 147
Msa0540100 AT3G44290.2 41.566 166 85 4 10 175 16 169 9.77e-40 140
Msa0540100 AT1G34180.2 40.994 161 81 3 10 156 18 178 1.64e-39 147
Msa0540100 AT5G61430.2 40.708 226 101 9 64 269 6 218 1.90e-39 141
Msa0540100 AT3G44290.1 41.566 166 85 4 10 175 16 169 7.51e-39 141
Msa0540100 AT1G32870.2 46.626 163 75 4 1 156 3 160 2.82e-38 143
Msa0540100 AT1G32870.1 46.626 163 75 4 1 156 3 160 2.97e-38 143
Msa0540100 AT1G32870.3 46.626 163 75 4 1 156 39 196 5.17e-38 143
Msa0540100 AT5G04395.1 43.275 171 79 4 2 159 22 187 7.32e-38 134
Msa0540100 AT3G12910.1 43.713 167 70 5 10 156 23 185 3.11e-37 136
Msa0540100 AT1G56010.1 58.763 97 34 1 66 156 8 104 5.20e-35 129
Msa0540100 AT3G12977.2 54.630 108 42 3 53 156 10 114 1.60e-34 127
Msa0540100 AT2G18060.2 74.286 70 17 1 89 157 2 71 6.44e-30 116
Msa0540100 AT2G33480.3 50.000 102 48 1 59 157 3 104 4.34e-28 109
Msa0540100 AT1G02230.1 39.196 199 98 8 9 193 4 193 1.60e-26 108
Msa0540100 AT4G01550.1 36.158 177 104 5 11 183 7 178 5.13e-26 108
Msa0540100 AT4G01520.1 37.654 162 93 5 9 165 5 163 6.62e-26 105
Msa0540100 AT4G01540.4 38.125 160 91 5 11 165 7 163 1.16e-24 103
Msa0540100 AT4G01540.3 38.125 160 91 5 11 165 7 163 1.39e-24 103
Msa0540100 AT4G01540.2 38.125 160 91 5 11 165 7 163 1.84e-24 103
Msa0540100 AT4G28530.2 36.145 166 49 5 8 156 10 135 2.07e-24 102
Msa0540100 AT4G01540.1 38.125 160 91 5 11 165 7 163 2.29e-24 103
Msa0540100 AT5G64530.1 36.310 168 73 6 8 156 3 155 3.54e-24 98.2
Msa0540100 AT5G64530.2 42.105 133 60 5 8 138 3 120 1.13e-23 95.9
Msa0540100 AT1G02250.1 34.762 210 120 11 9 210 4 204 7.87e-23 98.2
Msa0540100 AT3G10490.4 53.750 80 33 1 84 159 2 81 2.35e-22 97.1
Msa0540100 AT3G10490.3 53.750 80 33 1 84 159 2 81 2.35e-22 97.1
Msa0540100 AT3G04420.2 36.025 161 88 5 9 162 4 156 5.68e-22 94.7
Msa0540100 AT3G04420.1 36.025 161 88 5 9 162 4 156 8.07e-22 95.1
Msa0540100 AT5G22380.1 35.897 156 91 4 8 154 5 160 8.62e-22 93.2
Msa0540100 AT3G44350.2 33.974 156 90 5 11 156 8 160 1.16e-21 92.8
Msa0540100 AT3G44350.1 38.931 131 71 5 11 135 8 135 9.08e-21 88.2
Msa0540100 AT1G01010.1 34.641 153 85 6 11 153 6 153 3.83e-19 88.6
Msa0540100 AT2G43000.2 44.318 88 45 2 73 156 2 89 1.84e-18 82.8
Msa0540100 AT1G02220.1 38.519 135 65 5 8 134 3 127 3.27e-18 85.5
Msa0540100 AT5G50820.1 36.552 145 67 6 1 136 10 138 5.33e-18 81.6
Msa0540100 AT3G56530.1 29.487 156 105 3 2 154 46 199 3.16e-16 79.0
Msa0540100 AT5G22290.2 47.059 68 33 1 90 157 2 66 3.94e-15 74.7
Msa0540100 AT3G55210.1 28.834 163 94 5 8 154 11 167 4.06e-15 75.1
Msa0540100 AT5G14000.1 30.573 157 100 3 5 157 10 161 5.70e-15 73.2
Msa0540100 AT5G14000.2 32.353 136 83 3 5 136 10 140 1.07e-13 68.6
Msa0540100 AT3G04430.1 35.075 134 70 6 14 134 6 135 3.20e-11 62.4

Find 90 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAATACTTACAAGAAAAT+TGG 0.239923 4_1:+21642480 Msa0540100:CDS
ATAAGTTGTTTCACTATAAT+AGG 0.269347 4_1:-21643533 None:intergenic
GAGCAACAAATGCAGGGTTT+TGG 0.295401 4_1:+21642430 Msa0540100:CDS
AGGTATCAAGTTTCAGAATC+TGG 0.305736 4_1:+21643596 Msa0540100:CDS
TTCTAATGGCGGTGTGCCAC+CGG 0.345325 4_1:+21640749 Msa0540100:CDS
AAGATGGATGGGTGGTATGC+AGG 0.347766 4_1:+21643195 Msa0540100:CDS
CTTCACTCCCAATCTTGAAT+AGG 0.355765 4_1:-21643235 None:intergenic
TTGTGAACCACCTCAAGAAA+TGG 0.360627 4_1:+21643634 Msa0540100:CDS
TGAAAGCTGATTGATTTGAT+TGG 0.364349 4_1:-21643759 None:intergenic
CAGGAAGAGACAAGTGCATT+AGG 0.383725 4_1:+21642460 Msa0540100:CDS
TATTAGTCCTTGACCCTGTT+GGG 0.386089 4_1:-21642407 None:intergenic
GTTGAGGCTGGGGTTGGGAG+TGG 0.389288 4_1:-21643457 None:intergenic
TAGAGGTTGAGGCTGGGGTT+GGG 0.397901 4_1:-21643462 None:intergenic
GTAGAGGTTGAGGCTGGGGT+TGG 0.413911 4_1:-21643463 None:intergenic
CTATTAGTCCTTGACCCTGT+TGG 0.415287 4_1:-21642408 None:intergenic
CTCATGGACAAAAGACTGAT+TGG 0.417162 4_1:+21642541 Msa0540100:CDS
GCCTGTAGAGGTTGAGGCTG+GGG 0.418162 4_1:-21643467 None:intergenic
TCTAATGGCGGTGTGCCACC+GGG 0.432129 4_1:+21640750 Msa0540100:CDS
GAAAGCTGATTGATTTGATT+GGG 0.434532 4_1:-21643758 None:intergenic
ACTAATAGAGCAACAAATGC+AGG 0.444998 4_1:+21642423 Msa0540100:CDS
AAGGACAGAAAGTACCCAAC+AGG 0.454734 4_1:+21642393 Msa0540100:CDS
GAGGAAATATTGTTCATTTG+TGG 0.454849 4_1:-21643281 None:intergenic
TAGAGTATGAGTTCTTCTAA+TGG 0.457341 4_1:+21640735 None:intergenic
TCAGAATCTGGCATTGAAGT+TGG 0.458946 4_1:+21643608 Msa0540100:CDS
ATGAATGGGGAATGCTTGAT+AGG 0.460214 4_1:+21643684 Msa0540100:CDS
CTTGAACAAGATGGAACCTT+GGG 0.472651 4_1:+21640872 Msa0540100:CDS
ACCCCAGCCTCAACCTCTAC+AGG 0.478031 4_1:+21643466 Msa0540100:CDS
AGATGGATGGGTGGTATGCA+GGG 0.480498 4_1:+21643196 Msa0540100:CDS
TAGCCTGTAGAGGTTGAGGC+TGG 0.482716 4_1:-21643469 None:intergenic
GTGGTGAAGGAATGAATGAA+TGG 0.483190 4_1:+21643669 Msa0540100:CDS
AGCCTGTAGAGGTTGAGGCT+GGG 0.491178 4_1:-21643468 None:intergenic
TGTGAACCACCTCAAGAAAT+GGG 0.493376 4_1:+21643635 Msa0540100:CDS
AATCAATCAGCTTTCATTGA+GGG 0.497186 4_1:+21643766 Msa0540100:CDS
TGGTGAAGGAATGAATGAAT+GGG 0.502961 4_1:+21643670 Msa0540100:CDS
CATGAATACCGTCTTGAAGA+TGG 0.503674 4_1:+21642570 Msa0540100:CDS
GAAATGTATTTGTAGGAAGA+TGG 0.506020 4_1:+21643179 Msa0540100:intron
GCTTTCATTGAGGGGAGAGA+TGG 0.506539 4_1:+21643775 Msa0540100:CDS
TTTCGAGCTCGAAACCGGAT+AGG 0.515112 4_1:-21643379 None:intergenic
CCTACACCCATTTCTTGAGG+TGG 0.516209 4_1:-21643641 None:intergenic
CTTCCTACACCCATTTCTTG+AGG 0.516910 4_1:-21643644 None:intergenic
AAAAGAGGCTACAAGGTTTG+AGG 0.524109 4_1:+21643727 Msa0540100:CDS
TTGTGGATCTTGATTGTGTG+TGG 0.525676 4_1:-21643264 None:intergenic
CGAAACCGGATAGGTTCCTA+TGG 0.529928 4_1:-21643370 None:intergenic
AAGTTAGCCTGTAGAGGTTG+AGG 0.533705 4_1:-21643473 None:intergenic
GAAGGACCGTTGATTTGTTG+AGG 0.537902 4_1:-21643300 None:intergenic
AAATCAATCAGCTTTCATTG+AGG 0.543711 4_1:+21643765 Msa0540100:CDS
CTACCACTCTCACAATCTCT+AGG 0.544505 4_1:-21643563 None:intergenic
AAAGAGATGCATACATTGGT+AGG 0.547128 4_1:-21642600 None:intergenic
ATAGGTTGTTCTGTCTGTAA+AGG 0.547458 4_1:-21643515 None:intergenic
GAATGATGACTCCACAAAAG+AGG 0.551407 4_1:+21643712 Msa0540100:CDS
TTCAAGATTGGGAGTGAAGG+TGG 0.552771 4_1:+21643239 Msa0540100:CDS
TTGATAATGGAGACTAAGCT+CGG 0.553649 4_1:-21643405 None:intergenic
TGTATTTGTAGGAAGATGGA+TGG 0.554275 4_1:+21643183 Msa0540100:intron
ACTCCACAAAAGAGGCTACA+AGG 0.557185 4_1:+21643720 Msa0540100:CDS
ATCAATCAGCTTTCATTGAG+GGG 0.560562 4_1:+21643767 Msa0540100:CDS
GGTGTAGGAAGGAGTGGTGA+AGG 0.561219 4_1:+21643656 Msa0540100:CDS
AACCACCATAGGAACCTATC+CGG 0.566236 4_1:+21643365 Msa0540100:CDS
TGATATGGATGTTATAAGAG+AGG 0.567950 4_1:+21640845 Msa0540100:CDS
CTCAAGAAATGGGTGTAGGA+AGG 0.571055 4_1:+21643645 Msa0540100:CDS
GAAATGGGTGTAGGAAGGAG+TGG 0.573489 4_1:+21643650 Msa0540100:CDS
TGAAGTAACTCTTCATCAGT+CGG 0.581155 4_1:-21640786 None:intergenic
AGAGGTGGACTTGAACAAGA+TGG 0.584582 4_1:+21640863 Msa0540100:CDS
AATCCTAGAGATTGTGAGAG+TGG 0.585606 4_1:+21643560 Msa0540100:CDS
GATTGTGAGAGTGGTAGTGA+TGG 0.586886 4_1:+21643569 Msa0540100:CDS
TACAAAGGCAGAGCTCCTCA+TGG 0.591624 4_1:+21642525 Msa0540100:CDS
ACTTGAACAAGATGGAACCT+TGG 0.595484 4_1:+21640871 Msa0540100:CDS
CTATTCAAGATTGGGAGTGA+AGG 0.598153 4_1:+21643236 Msa0540100:CDS
AACAACATCAAAACCACCAT+AGG 0.601748 4_1:+21643354 Msa0540100:CDS
TAATCAAAGTTAGCCTGTAG+AGG 0.606992 4_1:-21643479 None:intergenic
AAGACTCTTGTGTTCTACAA+AGG 0.611421 4_1:+21642510 Msa0540100:CDS
ATGGAACCTTGGGACTTGCA+AGG 0.612104 4_1:+21640882 Msa0540100:CDS
GAAAGTACCCAACAGGGTCA+AGG 0.612193 4_1:+21642400 Msa0540100:CDS
TGATAATGGAGACTAAGCTC+GGG 0.612739 4_1:-21643404 None:intergenic
CCACCTCAAGAAATGGGTGT+AGG 0.613141 4_1:+21643641 Msa0540100:CDS
TATGGATGTTATAAGAGAGG+TGG 0.621522 4_1:+21640848 Msa0540100:CDS
CTAATAGAGCAACAAATGCA+GGG 0.623645 4_1:+21642424 Msa0540100:CDS
AGAGTGGTAGTGATGGTTTG+AGG 0.624748 4_1:+21643576 Msa0540100:CDS
AACCGGATAGGTTCCTATGG+TGG 0.626386 4_1:-21643367 None:intergenic
GTCGGATGAAATCGAAACCC+CGG 0.631890 4_1:-21640768 None:intergenic
GTATTTGTAGGAAGATGGAT+GGG 0.647842 4_1:+21643184 Msa0540100:intron
GATCATTGCCATCTTCAAGA+CGG 0.649154 4_1:-21642578 None:intergenic
ATATTTCCTCAACAAATCAA+CGG 0.660597 4_1:+21643294 Msa0540100:CDS
GTGGTATTTCTTCAGTCACA+AGG 0.667084 4_1:+21642374 Msa0540100:CDS
AGTATGAGTTCTTCTAATGG+CGG 0.674587 4_1:+21640738 None:intergenic
CTAATGGCGGTGTGCCACCG+GGG 0.679366 4_1:+21640751 Msa0540100:CDS
TTTGTAGGAAGATGGATGGG+TGG 0.681897 4_1:+21643187 Msa0540100:intron
GGTGAAGGAATGAATGAATG+GGG 0.696621 4_1:+21643671 Msa0540100:CDS
GATCGACACCACAAAACGAG+TGG 0.701290 4_1:+21642355 Msa0540100:CDS
AGGACAGAAAGTACCCAACA+GGG 0.718761 4_1:+21642394 Msa0540100:CDS
GGATGAAATCGAAACCCCGG+TGG 0.755662 4_1:-21640765 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCTTTATTTTGAAT+GGG - chr4_1:21642167-21642186 None:intergenic 10.0%
!! CTAAAAAAAAAAAACATGAA+AGG - chr4_1:21641201-21641220 None:intergenic 15.0%
!!! TTCATGTTTTTTTTTTTTAG+TGG + chr4_1:21641201-21641220 Msa0540100:intron 15.0%
!!! GTTTTTTTCTTTATTTTGAA+TGG - chr4_1:21642168-21642187 None:intergenic 15.0%
!!! CTAATTTTTGCTTATATTTT+TGG - chr4_1:21642654-21642673 None:intergenic 15.0%
!!! ACTCATTTTTGTTTATATTT+TGG + chr4_1:21642732-21642751 Msa0540100:intron 15.0%
!!! CTCATTTTTGTTTATATTTT+GGG + chr4_1:21642733-21642752 Msa0540100:intron 15.0%
!! TCATTACTATTTGAAAAAGA+AGG + chr4_1:21640806-21640825 Msa0540100:CDS 20.0%
!!! ATCCATATCAAATTTTTGAA+AGG - chr4_1:21640835-21640854 None:intergenic 20.0%
!!! TCTTATTTAACTTTAGTGTT+TGG + chr4_1:21640919-21640938 Msa0540100:intron 20.0%
!! AGTTACACATGTATATAAAA+TGG + chr4_1:21641018-21641037 Msa0540100:intron 20.0%
!! CAGATAAACACAATAATATA+TGG - chr4_1:21641090-21641109 None:intergenic 20.0%
!! TATCTGAATCCAAATTTAAT+TGG + chr4_1:21641104-21641123 Msa0540100:intron 20.0%
!!! TTTTCTTTTTTGACAAAGTT+TGG - chr4_1:21641501-21641520 None:intergenic 20.0%
!! TTAAACTAATGTAATCGATT+TGG - chr4_1:21641619-21641638 None:intergenic 20.0%
!! TCACATTAGATAAAACATTT+AGG - chr4_1:21641808-21641827 None:intergenic 20.0%
!!! TTTTATCTAATGTGAACAAA+AGG + chr4_1:21641813-21641832 Msa0540100:intron 20.0%
!! TTTATCTAATGTGAACAAAA+GGG + chr4_1:21641814-21641833 Msa0540100:intron 20.0%
!! TAAAAAAGGAAATAGATGTA+AGG - chr4_1:21641883-21641902 None:intergenic 20.0%
!! AATTGTGGATGAATTTAATA+TGG - chr4_1:21641969-21641988 None:intergenic 20.0%
!! TCATGATAATATTTCAATTG+TGG - chr4_1:21641984-21642003 None:intergenic 20.0%
!!! ATACATTATGTTTAAGTTTC+TGG + chr4_1:21642269-21642288 Msa0540100:intron 20.0%
!! TTAGTAAACACTACAAATTA+TGG - chr4_1:21642295-21642314 None:intergenic 20.0%
!!! TTTTTGCTTATATTTTTGGA+CGG - chr4_1:21642650-21642669 None:intergenic 20.0%
!!! TTTTTGTTTATATTTTGGGA+CGG + chr4_1:21642737-21642756 Msa0540100:intron 20.0%
!!! TTTAAAATTTGTTACAACGT+GGG - chr4_1:21642833-21642852 None:intergenic 20.0%
!!! ATTTAAAATTTGTTACAACG+TGG - chr4_1:21642834-21642853 None:intergenic 20.0%
!! TGACAAAAGTTACAATTTAT+GGG - chr4_1:21642926-21642945 None:intergenic 20.0%
!! TTGACAAAAGTTACAATTTA+TGG - chr4_1:21642927-21642946 None:intergenic 20.0%
!! AATGAATGAAATGTATTTGT+AGG + chr4_1:21643172-21643191 Msa0540100:intron 20.0%
!!! ATAAGTTGTTTCACTATAAT+AGG - chr4_1:21643536-21643555 None:intergenic 20.0%
! GTCCTTTCAAAAATTTGATA+TGG + chr4_1:21640830-21640849 Msa0540100:CDS 25.0%
! GAATCCAAATTTAATTGGTT+AGG + chr4_1:21641109-21641128 Msa0540100:intron 25.0%
! TCATCCTAACCAATTAAATT+TGG - chr4_1:21641116-21641135 None:intergenic 25.0%
!!! TGTTTTTTTTTTTTAGTGGC+CGG + chr4_1:21641205-21641224 Msa0540100:intron 25.0%
! TGCATAAAATATGTATGTCT+GGG - chr4_1:21641240-21641259 None:intergenic 25.0%
! ATGCATAAAATATGTATGTC+TGG - chr4_1:21641241-21641260 None:intergenic 25.0%
!!! TTTTAATTGTAAGAGACCTA+AGG - chr4_1:21641349-21641368 None:intergenic 25.0%
!! ATTTTTGTATCTCAAAACGT+TGG + chr4_1:21641559-21641578 Msa0540100:intron 25.0%
! AGGAATACTTACAAGAAAAT+TGG + chr4_1:21642480-21642499 Msa0540100:CDS 25.0%
!! GGTGAAGTATTTAACATATA+CGG - chr4_1:21642628-21642647 None:intergenic 25.0%
!!! TTTTGCTTATATTTTTGGAC+GGG - chr4_1:21642649-21642668 None:intergenic 25.0%
! ACAAAAGTTACAATTTATGG+GGG - chr4_1:21642924-21642943 None:intergenic 25.0%
! GACAAAAGTTACAATTTATG+GGG - chr4_1:21642925-21642944 None:intergenic 25.0%
!! GATAGATGTTTGACAATTTT+GGG - chr4_1:21642986-21643005 None:intergenic 25.0%
!! TGATAGATGTTTGACAATTT+TGG - chr4_1:21642987-21643006 None:intergenic 25.0%
! AAGAAAAACCTATTCAAGAT+TGG + chr4_1:21643227-21643246 Msa0540100:CDS 25.0%
! AGAAAAACCTATTCAAGATT+GGG + chr4_1:21643228-21643247 Msa0540100:CDS 25.0%
! ATATTTCCTCAACAAATCAA+CGG + chr4_1:21643294-21643313 Msa0540100:CDS 25.0%
TGATATGGATGTTATAAGAG+AGG + chr4_1:21640845-21640864 Msa0540100:CDS 30.0%
TTGTTATGACAGTGCATAAA+AGG - chr4_1:21641171-21641190 None:intergenic 30.0%
!!! GTTTTTTTTTTTTAGTGGCC+GGG + chr4_1:21641206-21641225 Msa0540100:intron 30.0%
!!! TTTTTTTTTTTTAGTGGCCG+GGG + chr4_1:21641207-21641226 Msa0540100:intron 30.0%
GCATAAAATATGTATGTCTG+GGG - chr4_1:21641239-21641258 None:intergenic 30.0%
CAGTTATTACAAAGCATGAA+AGG - chr4_1:21641299-21641318 None:intergenic 30.0%
TATCTTGTCATCTTAACCTT+GGG - chr4_1:21641322-21641341 None:intergenic 30.0%
TTATCTTGTCATCTTAACCT+TGG - chr4_1:21641323-21641342 None:intergenic 30.0%
! ACTTTTGTATCTCAAAACGT+TGG - chr4_1:21641593-21641612 None:intergenic 30.0%
TTGAAAGTTTGGTAGGAAAA+GGG - chr4_1:21641779-21641798 None:intergenic 30.0%
TTTGAAAGTTTGGTAGGAAA+AGG - chr4_1:21641780-21641799 None:intergenic 30.0%
!!! ACCTTTTGAAACTTTTTCAG+AGG + chr4_1:21641942-21641961 Msa0540100:intron 30.0%
! ACCTCTGAAAAAGTTTCAAA+AGG - chr4_1:21641946-21641965 None:intergenic 30.0%
CTACGAACTCCTTTATAATT+TGG + chr4_1:21642187-21642206 Msa0540100:intron 30.0%
GATGTAGGACCAAATTATAA+AGG - chr4_1:21642199-21642218 None:intergenic 30.0%
TTATTTATGCTAGTCGATGT+AGG - chr4_1:21642214-21642233 None:intergenic 30.0%
TGCACAGAAAAATGTAAGAT+TGG + chr4_1:21642333-21642352 Msa0540100:intron 30.0%
! TAAGTTTTGCGAAATTCAAC+AGG - chr4_1:21642954-21642973 None:intergenic 30.0%
ATGGAGGAAATTAACGAATA+GGG - chr4_1:21643014-21643033 None:intergenic 30.0%
AGTGTCAAATAGGCAATTAA+CGG - chr4_1:21643053-21643072 None:intergenic 30.0%
GAAATGTATTTGTAGGAAGA+TGG + chr4_1:21643179-21643198 Msa0540100:intron 30.0%
GAGGAAATATTGTTCATTTG+TGG - chr4_1:21643284-21643303 None:intergenic 30.0%
! TTGATTTTCTCTTTGCATGA+AGG - chr4_1:21643321-21643340 None:intergenic 30.0%
!!! AGTTTTGCAAGTGTTGATAA+TGG - chr4_1:21643421-21643440 None:intergenic 30.0%
!! GAAAGCTGATTGATTTGATT+GGG - chr4_1:21643761-21643780 None:intergenic 30.0%
!! TGAAAGCTGATTGATTTGAT+TGG - chr4_1:21643762-21643781 None:intergenic 30.0%
AAATCAATCAGCTTTCATTG+AGG + chr4_1:21643765-21643784 Msa0540100:CDS 30.0%
AATCAATCAGCTTTCATTGA+GGG + chr4_1:21643766-21643785 Msa0540100:CDS 30.0%
TGAAGTAACTCTTCATCAGT+CGG - chr4_1:21640789-21640808 None:intergenic 35.0%
TATGGATGTTATAAGAGAGG+TGG + chr4_1:21640848-21640867 Msa0540100:CDS 35.0%
TTATGACAGTGCATAAAAGG+AGG - chr4_1:21641168-21641187 None:intergenic 35.0%
GATGACAAGATAATTGCCTT+AGG + chr4_1:21641330-21641349 Msa0540100:intron 35.0%
TTAGGCTCTGTTTGAAAGTT+TGG - chr4_1:21641790-21641809 None:intergenic 35.0%
!! TATCATGAAGAGTTTGCTGT+TGG + chr4_1:21641996-21642015 Msa0540100:intron 35.0%
TGTCTTGAGCTTTCATAGTT+AGG + chr4_1:21642041-21642060 Msa0540100:intron 35.0%
GTCTTGAGCTTTCATAGTTA+GGG + chr4_1:21642042-21642061 Msa0540100:intron 35.0%
! AAGAAATACCACTCGTTTTG+TGG - chr4_1:21642366-21642385 None:intergenic 35.0%
ACTAATAGAGCAACAAATGC+AGG + chr4_1:21642423-21642442 Msa0540100:CDS 35.0%
CTAATAGAGCAACAAATGCA+GGG + chr4_1:21642424-21642443 Msa0540100:CDS 35.0%
AAGACTCTTGTGTTCTACAA+AGG + chr4_1:21642510-21642529 Msa0540100:CDS 35.0%
AAAGAGATGCATACATTGGT+AGG - chr4_1:21642603-21642622 None:intergenic 35.0%
GGGGTAATTGACTATTTACT+CGG - chr4_1:21642905-21642924 None:intergenic 35.0%
GATGGAGGAAATTAACGAAT+AGG - chr4_1:21643015-21643034 None:intergenic 35.0%
AAAAGTCATGCCACATCATA+GGG + chr4_1:21643086-21643105 Msa0540100:intron 35.0%
TGTATTTGTAGGAAGATGGA+TGG + chr4_1:21643183-21643202 Msa0540100:intron 35.0%
GTATTTGTAGGAAGATGGAT+GGG + chr4_1:21643184-21643203 Msa0540100:intron 35.0%
AACAACATCAAAACCACCAT+AGG + chr4_1:21643354-21643373 Msa0540100:CDS 35.0%
!! TTGATAATGGAGACTAAGCT+CGG - chr4_1:21643408-21643427 None:intergenic 35.0%
! TAATCAAAGTTAGCCTGTAG+AGG - chr4_1:21643482-21643501 None:intergenic 35.0%
ATAGGTTGTTCTGTCTGTAA+AGG - chr4_1:21643518-21643537 None:intergenic 35.0%
AGGTATCAAGTTTCAGAATC+TGG + chr4_1:21643596-21643615 Msa0540100:CDS 35.0%
TGGTGAAGGAATGAATGAAT+GGG + chr4_1:21643670-21643689 Msa0540100:CDS 35.0%
ATCAATCAGCTTTCATTGAG+GGG + chr4_1:21643767-21643786 Msa0540100:CDS 35.0%
ACTTGAACAAGATGGAACCT+TGG + chr4_1:21640871-21640890 Msa0540100:CDS 40.0%
CTTGAACAAGATGGAACCTT+GGG + chr4_1:21640872-21640891 Msa0540100:CDS 40.0%
! ATTTTACCTTGCAAGTCCCA+AGG - chr4_1:21640891-21640910 None:intergenic 40.0%
! TGAGCATAACTCAGTTGGTA+AGG - chr4_1:21641267-21641286 None:intergenic 40.0%
TGCTTTGTAATAACTGCCCA+AGG + chr4_1:21641303-21641322 Msa0540100:intron 40.0%
TTTAGGAGGGATGAGATTAG+AGG - chr4_1:21641747-21641766 None:intergenic 40.0%
AAGTTTGGTAGGAAAAGGGA+GGG - chr4_1:21641775-21641794 None:intergenic 40.0%
AAAGTTTGGTAGGAAAAGGG+AGG - chr4_1:21641776-21641795 None:intergenic 40.0%
GCTCTGTTTGAAAGTTTGGT+AGG - chr4_1:21641786-21641805 None:intergenic 40.0%
GCAACTCTACAAAATTACGC+AGG - chr4_1:21642073-21642092 None:intergenic 40.0%
GCAAGTTCAAGATGTACGAA+AGG - chr4_1:21642121-21642140 None:intergenic 40.0%
! TCGTACATCTTGAACTTGCT+TGG + chr4_1:21642122-21642141 Msa0540100:intron 40.0%
GTGGTATTTCTTCAGTCACA+AGG + chr4_1:21642374-21642393 Msa0540100:CDS 40.0%
TATTAGTCCTTGACCCTGTT+GGG - chr4_1:21642410-21642429 None:intergenic 40.0%
! CAATCAGTCTTTTGTCCATG+AGG - chr4_1:21642543-21642562 None:intergenic 40.0%
CTCATGGACAAAAGACTGAT+TGG + chr4_1:21642541-21642560 Msa0540100:CDS 40.0%
CATGAATACCGTCTTGAAGA+TGG + chr4_1:21642570-21642589 Msa0540100:CDS 40.0%
GATCATTGCCATCTTCAAGA+CGG - chr4_1:21642581-21642600 None:intergenic 40.0%
GGAGAAAGAGATGCATACAT+TGG - chr4_1:21642607-21642626 None:intergenic 40.0%
GAAAAGTCATGCCACATCAT+AGG + chr4_1:21643085-21643104 Msa0540100:intron 40.0%
AAAGTCATGCCACATCATAG+GGG + chr4_1:21643087-21643106 Msa0540100:intron 40.0%
AGTCAATAACCCCTATGATG+TGG - chr4_1:21643099-21643118 None:intergenic 40.0%
CTTCACTCCCAATCTTGAAT+AGG - chr4_1:21643238-21643257 None:intergenic 40.0%
CTATTCAAGATTGGGAGTGA+AGG + chr4_1:21643236-21643255 Msa0540100:CDS 40.0%
TTGTGGATCTTGATTGTGTG+TGG - chr4_1:21643267-21643286 None:intergenic 40.0%
!! TGATAATGGAGACTAAGCTC+GGG - chr4_1:21643407-21643426 None:intergenic 40.0%
AATCCTAGAGATTGTGAGAG+TGG + chr4_1:21643560-21643579 Msa0540100:CDS 40.0%
! TCAGAATCTGGCATTGAAGT+TGG + chr4_1:21643608-21643627 Msa0540100:CDS 40.0%
TTGTGAACCACCTCAAGAAA+TGG + chr4_1:21643634-21643653 Msa0540100:CDS 40.0%
TGTGAACCACCTCAAGAAAT+GGG + chr4_1:21643635-21643654 Msa0540100:CDS 40.0%
GTGGTGAAGGAATGAATGAA+TGG + chr4_1:21643669-21643688 Msa0540100:CDS 40.0%
GGTGAAGGAATGAATGAATG+GGG + chr4_1:21643671-21643690 Msa0540100:CDS 40.0%
ATGAATGGGGAATGCTTGAT+AGG + chr4_1:21643684-21643703 Msa0540100:CDS 40.0%
GAATGATGACTCCACAAAAG+AGG + chr4_1:21643712-21643731 Msa0540100:CDS 40.0%
! AAACCTTGTAGCCTCTTTTG+TGG - chr4_1:21643726-21643745 None:intergenic 40.0%
AAAAGAGGCTACAAGGTTTG+AGG + chr4_1:21643727-21643746 Msa0540100:CDS 40.0%
!!! AGATGGATTTTTGGGGCTAT+GGG + chr4_1:21643792-21643811 Msa0540100:CDS 40.0%
! AGAGGTGGACTTGAACAAGA+TGG + chr4_1:21640863-21640882 Msa0540100:CDS 45.0%
TCTCGTGAGCATAACTCAGT+TGG - chr4_1:21641272-21641291 None:intergenic 45.0%
AGTTTGGTAGGAAAAGGGAG+GGG - chr4_1:21641774-21641793 None:intergenic 45.0%
!! AAGGACAGAAAGTACCCAAC+AGG + chr4_1:21642393-21642412 Msa0540100:CDS 45.0%
!! AGGACAGAAAGTACCCAACA+GGG + chr4_1:21642394-21642413 Msa0540100:CDS 45.0%
CTATTAGTCCTTGACCCTGT+TGG - chr4_1:21642411-21642430 None:intergenic 45.0%
! GAGCAACAAATGCAGGGTTT+TGG + chr4_1:21642430-21642449 Msa0540100:CDS 45.0%
CAGGAAGAGACAAGTGCATT+AGG + chr4_1:21642460-21642479 Msa0540100:CDS 45.0%
ACCATGTGGCAGTGTCAAAT+AGG - chr4_1:21643063-21643082 None:intergenic 45.0%
! GCATGACTTTTCTGACCATG+TGG - chr4_1:21643077-21643096 None:intergenic 45.0%
TTTGTAGGAAGATGGATGGG+TGG + chr4_1:21643187-21643206 Msa0540100:intron 45.0%
TTCAAGATTGGGAGTGAAGG+TGG + chr4_1:21643239-21643258 Msa0540100:CDS 45.0%
!! GAAGGACCGTTGATTTGTTG+AGG - chr4_1:21643303-21643322 None:intergenic 45.0%
AACCACCATAGGAACCTATC+CGG + chr4_1:21643365-21643384 Msa0540100:CDS 45.0%
! AAGTTAGCCTGTAGAGGTTG+AGG - chr4_1:21643476-21643495 None:intergenic 45.0%
CTACCACTCTCACAATCTCT+AGG - chr4_1:21643566-21643585 None:intergenic 45.0%
! GATTGTGAGAGTGGTAGTGA+TGG + chr4_1:21643569-21643588 Msa0540100:CDS 45.0%
! AGAGTGGTAGTGATGGTTTG+AGG + chr4_1:21643576-21643595 Msa0540100:CDS 45.0%
CTTCCTACACCCATTTCTTG+AGG - chr4_1:21643647-21643666 None:intergenic 45.0%
CTCAAGAAATGGGTGTAGGA+AGG + chr4_1:21643645-21643664 Msa0540100:CDS 45.0%
ACTCCACAAAAGAGGCTACA+AGG + chr4_1:21643720-21643739 Msa0540100:CDS 45.0%
!! TGAGGGGAGAGATGGATTTT+TGG + chr4_1:21643783-21643802 Msa0540100:CDS 45.0%
!! GAGGGGAGAGATGGATTTTT+GGG + chr4_1:21643784-21643803 Msa0540100:CDS 45.0%
!! AGGGGAGAGATGGATTTTTG+GGG + chr4_1:21643785-21643804 Msa0540100:CDS 45.0%
!!! GAGATGGATTTTTGGGGCTA+TGG + chr4_1:21643791-21643810 Msa0540100:CDS 45.0%
!! TGAATTTATAATAATAAAAA+AGG - chr4_1:21641897-21641916 None:intergenic 5.0%
!!! ATTAAAATATTTATTTTCAT+TGG - chr4_1:21642239-21642258 None:intergenic 5.0%
GTCGGATGAAATCGAAACCC+CGG - chr4_1:21640771-21640790 None:intergenic 50.0%
ATGGAACCTTGGGACTTGCA+AGG + chr4_1:21640882-21640901 Msa0540100:CDS 50.0%
! TATGTCTGGGGTTCAAACCC+CGG - chr4_1:21641227-21641246 None:intergenic 50.0%
GAAAAGGGAGGGGAGAGTTT+AGG - chr4_1:21641764-21641783 None:intergenic 50.0%
GATCGACACCACAAAACGAG+TGG + chr4_1:21642355-21642374 Msa0540100:CDS 50.0%
!! GAAAGTACCCAACAGGGTCA+AGG + chr4_1:21642400-21642419 Msa0540100:CDS 50.0%
!!! GCAGGGTTTTGGAAAGCTAC+AGG + chr4_1:21642441-21642460 Msa0540100:CDS 50.0%
TACAAAGGCAGAGCTCCTCA+TGG + chr4_1:21642525-21642544 Msa0540100:CDS 50.0%
! CCACATCAGCATGTTGATGG+AGG - chr4_1:21643030-21643049 None:intergenic 50.0%
CCTCCATCAACATGCTGATG+TGG + chr4_1:21643027-21643046 Msa0540100:intron 50.0%
GCCTATTTGACACTGCCACA+TGG + chr4_1:21643059-21643078 Msa0540100:intron 50.0%
AAGATGGATGGGTGGTATGC+AGG + chr4_1:21643195-21643214 Msa0540100:CDS 50.0%
AGATGGATGGGTGGTATGCA+GGG + chr4_1:21643196-21643215 Msa0540100:CDS 50.0%
AACCGGATAGGTTCCTATGG+TGG - chr4_1:21643370-21643389 None:intergenic 50.0%
CGAAACCGGATAGGTTCCTA+TGG - chr4_1:21643373-21643392 None:intergenic 50.0%
TTTCGAGCTCGAAACCGGAT+AGG - chr4_1:21643382-21643401 None:intergenic 50.0%
CCTACACCCATTTCTTGAGG+TGG - chr4_1:21643644-21643663 None:intergenic 50.0%
CCACCTCAAGAAATGGGTGT+AGG + chr4_1:21643641-21643660 Msa0540100:CDS 50.0%
GAAATGGGTGTAGGAAGGAG+TGG + chr4_1:21643650-21643669 Msa0540100:CDS 50.0%
GCTTTCATTGAGGGGAGAGA+TGG + chr4_1:21643775-21643794 Msa0540100:CDS 50.0%
TTCTAATGGCGGTGTGCCAC+CGG + chr4_1:21640749-21640768 Msa0540100:CDS 55.0%
GGATGAAATCGAAACCCCGG+TGG - chr4_1:21640768-21640787 None:intergenic 55.0%
AGGGAGGGGAGAGTTTAGGA+GGG - chr4_1:21641760-21641779 None:intergenic 55.0%
AAGGGAGGGGAGAGTTTAGG+AGG - chr4_1:21641761-21641780 None:intergenic 55.0%
CGGCCACATCAGCATGTTGA+TGG - chr4_1:21643033-21643052 None:intergenic 55.0%
!! GGGCTTTTCGAGCTCGAAAC+CGG - chr4_1:21643387-21643406 None:intergenic 55.0%
TAGAGGTTGAGGCTGGGGTT+GGG - chr4_1:21643465-21643484 None:intergenic 55.0%
AGCCTGTAGAGGTTGAGGCT+GGG - chr4_1:21643471-21643490 None:intergenic 55.0%
TAGCCTGTAGAGGTTGAGGC+TGG - chr4_1:21643472-21643491 None:intergenic 55.0%
GGTGTAGGAAGGAGTGGTGA+AGG + chr4_1:21643656-21643675 Msa0540100:CDS 55.0%
TCTAATGGCGGTGTGCCACC+GGG + chr4_1:21640750-21640769 Msa0540100:CDS 60.0%
GTAGAGGTTGAGGCTGGGGT+TGG - chr4_1:21643466-21643485 None:intergenic 60.0%
ACCCCAGCCTCAACCTCTAC+AGG + chr4_1:21643466-21643485 Msa0540100:CDS 60.0%
GCCTGTAGAGGTTGAGGCTG+GGG - chr4_1:21643470-21643489 None:intergenic 60.0%
CTAATGGCGGTGTGCCACCG+GGG + chr4_1:21640751-21640770 Msa0540100:CDS 65.0%
GTTGAGGCTGGGGTTGGGAG+TGG - chr4_1:21643460-21643479 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 21640741 21643823 21640741 ID=Msa0540100;Name=Msa0540100
chr4_1 mRNA 21640741 21643823 21640741 ID=Msa0540100-mRNA-1;Parent=Msa0540100;Name=Msa0540100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|353
chr4_1 exon 21640741 21640903 21640741 ID=Msa0540100-mRNA-1:exon:6143;Parent=Msa0540100-mRNA-1
chr4_1 exon 21642340 21642608 21642340 ID=Msa0540100-mRNA-1:exon:6144;Parent=Msa0540100-mRNA-1
chr4_1 exon 21643194 21643823 21643194 ID=Msa0540100-mRNA-1:exon:6145;Parent=Msa0540100-mRNA-1
chr4_1 CDS 21640741 21640903 21640741 ID=Msa0540100-mRNA-1:cds;Parent=Msa0540100-mRNA-1
chr4_1 CDS 21642340 21642608 21642340 ID=Msa0540100-mRNA-1:cds;Parent=Msa0540100-mRNA-1
chr4_1 CDS 21643194 21643823 21643194 ID=Msa0540100-mRNA-1:cds;Parent=Msa0540100-mRNA-1
Gene Sequence

>Msa0540100

ATGAGTTCTTCTAATGGCGGTGTGCCACCGGGGTTTCGATTTCATCCGACTGATGAAGAGTTACTTCATTACTATTTGAAAAAGAAGGTGTCCTTTCAAAAATTTGATATGGATGTTATAAGAGAGGTGGACTTGAACAAGATGGAACCTTGGGACTTGCAAGAAAAATGTAAGATTGGATCGACACCACAAAACGAGTGGTATTTCTTCAGTCACAAGGACAGAAAGTACCCAACAGGGTCAAGGACTAATAGAGCAACAAATGCAGGGTTTTGGAAAGCTACAGGAAGAGACAAGTGCATTAGGAATACTTACAAGAAAATTGGAATGAGAAAGACTCTTGTGTTCTACAAAGGCAGAGCTCCTCATGGACAAAAGACTGATTGGATTATGCATGAATACCGTCTTGAAGATGGCAATGATCCTACCAATGAAGATGGATGGGTGGTATGCAGGGTGTTCAAGAAGAAAAACCTATTCAAGATTGGGAGTGAAGGTGGATCCACACACAATCAAGATCCACAAATGAACAATATTTCCTCAACAAATCAACGGTCCTTCATGCAAAGAGAAAATCAATACTTACTACATCAACAACATCAAAACCACCATAGGAACCTATCCGGTTTCGAGCTCGAAAAGCCCGAGCTTAGTCTCCATTATCAACACTTGCAAAACTCTCAATACTCAATCTTCCACTCCCAACCCCAGCCTCAACCTCTACAGGCTAACTTTGATTACTCATATGCATCACCTTTACAGACAGAACAACCTATTATAGTGAAACAACTTATGACAAATCCTAGAGATTGTGAGAGTGGTAGTGATGGTTTGAGGTATCAAGTTTCAGAATCTGGCATTGAAGTTGGCTCTTGTGAACCACCTCAAGAAATGGGTGTAGGAAGGAGTGGTGAAGGAATGAATGAATGGGGAATGCTTGATAGGCTTGTGAATGATGACTCCACAAAAGAGGCTACAAGGTTTGAGGATGCAAATCCCAATCAAATCAATCAGCTTTCATTGAGGGGAGAGATGGATTTTTGGGGCTATGGGAAACAATGA
Protein sequence

>Msa0540100

MSSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQEKCKIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNTYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPTNEDGWVVCRVFKKKNLFKIGSEGGSTHNQDPQMNNISSTNQRSFMQRENQYLLHQQHQNHHRNLSGFELEKPELSLHYQHLQNSQYSIFHSQPQPQPLQANFDYSYASPLQTEQPIIVKQLMTNPRDCESGSDGLRYQVSESGIEVGSCEPPQEMGVGRSGEGMNEWGMLDRLVNDDSTKEATRFEDANPNQINQLSLRGEMDFWGYGKQ*