AlfalfaGEDB | Msa1357490

M. sativa cultivar zhongmu-4 / Msa1357490

KEGG: -
GO: -
PFAM: PF01190.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1357490	XP_003601984.1	99.375	160	1	0	1	160	1	160	3.35e-115	333

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1357490	sp\|Q9LX15\|DFC_ARATH	46.914	162	81	3	1	159	1	160	3.24e-44	146

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1357490	G7J4B2	99.375	160	1	0	1	160	1	160	1.60e-115	333

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004580	Msa1357490	0.837145	6.178067e-57	-8.615850e-47
Msa0004590	Msa1357490	0.844108	9.272460e-59	-8.615850e-47
Msa0012780	Msa1357490	0.816102	6.573616e-52	-8.615850e-47
Msa0012820	Msa1357490	0.858887	6.048870e-63	-8.615850e-47
Msa0024280	Msa1357490	0.821706	3.500483e-53	-8.615850e-47
Msa0025700	Msa1357490	0.812041	5.175053e-51	-8.615850e-47
Msa0032130	Msa1357490	0.800636	1.313286e-48	-8.615850e-47
Msa0032390	Msa1357490	0.800261	1.566066e-48	-8.615850e-47
Msa0036230	Msa1357490	0.810341	1.209295e-50	-8.615850e-47
Msa0036580	Msa1357490	0.850278	1.882450e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1357490	MtrunA17_Chr3g0124301	99.375	160	1	0	1	160	1	160	3.08e-119	333
Msa1357490	MtrunA17_Chr3g0115561	39.860	143	78	3	16	152	13	153	3.66e-31	110
Msa1357490	MtrunA17_Chr2g0283801	34.848	132	78	5	25	152	28	155	1.39e-22	88.2
Msa1357490	MtrunA17_Chr2g0316111	27.160	162	99	4	4	151	8	164	1.36e-13	65.1
Msa1357490	MtrunA17_Chr2g0316151	28.402	169	98	6	1	151	1	164	1.86e-13	64.7
Msa1357490	MtrunA17_Chr2g0316121	28.667	150	89	6	1	137	1	145	7.76e-11	57.4
Msa1357490	MtrunA17_Chr2g0316161	28.667	150	89	6	1	137	1	145	8.09e-11	57.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1357490	AT5G10130.1	46.914	162	81	3	1	159	1	160	3.29e-45	146
Msa1357490	AT4G08685.1	40.994	161	84	4	5	159	4	159	5.29e-36	122
Msa1357490	AT1G78040.1	36.095	169	92	5	1	159	1	163	5.96e-34	117
Msa1357490	AT1G78040.3	36.095	169	92	5	1	159	1	163	5.96e-34	117
Msa1357490	AT1G78040.2	36.095	169	92	5	1	159	1	163	5.96e-34	117
Msa1357490	AT1G29140.1	35.669	157	92	3	4	152	6	161	1.18e-26	99.0
Msa1357490	AT5G45880.1	39.024	123	70	3	25	143	35	156	4.04e-23	90.1
Msa1357490	AT4G18596.1	37.705	122	71	3	25	142	33	153	2.65e-22	87.8
Msa1357490	AT4G18596.2	37.705	122	71	3	25	142	79	199	6.63e-22	88.2

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Find 45 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCTATGGGTTACTTCA+AGG	0.456909	tig0016091:+4973	Msa1357490:CDS
AACATAGCTGTGGCAAGTAA+AGG	0.486675	tig0016091:-4401	None:intergenic
AAGGATTGTGTTGCTGTTAA+TGG	0.278593	tig0016091:+4355	Msa1357490:CDS
AATAAACACAACCTTTGATA+TGG	0.316996	tig0016091:-4424	None:intergenic
AATATCATCGTGTAATACAC+CGG	0.667061	tig0016091:+4877	Msa1357490:CDS
AATCAGACAAGTAATATTTG+AGG	0.510401	tig0016091:-5027	None:intergenic
ACAAGTAATATTTGAGGAGT+TGG	0.437901	tig0016091:-5021	None:intergenic
ACAGCTATGTTCCATATCAA+AGG	0.587960	tig0016091:+4413	Msa1357490:CDS
ACATAGCTGTGGCAAGTAAA+GGG	0.489307	tig0016091:-4400	None:intergenic
AGGAGTTGGTGGCAATATTG+AGG	0.508425	tig0016091:-5007	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTACCTTGGATGTAAAATG+TGG	-	tig0016091:4483-4502	None:intergenic	30.0%
TGTAAAATGTACACATGATC+AGG	-	tig0016091:4583-4602	None:intergenic	30.0%
TATTGTGACGATTCTTGATT+AGG	+	tig0016091:4704-4723	Msa1357490:intron	30.0%
GTGTATTACACGATGATATT+GGG	-	tig0016091:4877-4896	None:intergenic	30.0%
AATATCATCGTGTAATACAC+CGG	+	tig0016091:4877-4896	Msa1357490:CDS	30.0%
ACAAGTAATATTTGAGGAGT+TGG	-	tig0016091:5024-5043	None:intergenic	30.0%
TTTGATATGGAACATAGCTG+TGG	-	tig0016091:4414-4433	None:intergenic	35.0%
ACAGCTATGTTCCATATCAA+AGG	+	tig0016091:4413-4432	Msa1357490:CDS	35.0%
GTTAAGGTGTGTATTTACCT+TGG	-	tig0016091:4496-4515	None:intergenic	35.0%
CATTATGTTGTATGTTCCAG+TGG	-	tig0016091:4804-4823	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0016091	gene	4350	5060	4350	ID=Msa1357490;Name=Msa1357490
tig0016091	mRNA	4350	5060	4350	ID=Msa1357490-mRNA-1;Parent=Msa1357490;Name=Msa1357490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|2\|0\|160
tig0016091	exon	4350	4497	4350	ID=Msa1357490-mRNA-1:exon:10408;Parent=Msa1357490-mRNA-1
tig0016091	exon	4726	5060	4726	ID=Msa1357490-mRNA-1:exon:10409;Parent=Msa1357490-mRNA-1
tig0016091	CDS	4350	4497	4350	ID=Msa1357490-mRNA-1:cds;Parent=Msa1357490-mRNA-1
tig0016091	CDS	4726	5060	4726	ID=Msa1357490-mRNA-1:cds;Parent=Msa1357490-mRNA-1

Gene Sequence

>Msa1357490

ATGGCAAGGATTGTGTTGCTGTTAATGGCCCTTTCCCTCAGCTCTATCCTCCCTTTACTTGCCACAGCTATGTTCCATATCAAAGGTTGTGTTTATTGTGATACTTGCCGTGCTGGATTCGAAACCAACGCCACATTTTACATCCAAGGTGCAAAGGTGGGAATTCGGTGCCAAGACAGGAAGACTATGGACGAAGTTTTCTACACGGAAGGAGTGACAGATTCCACTGGAACATACAACATAATGGTTGAGAATGATCACCATGACAATATTTGCAAAACTGTGCTTGTTAGCAGCCCAATATCATCGTGTAATACACCGGACCCTGGGCGTAACAGATCCAGCATTGTGCTCACTCACTACAAAAATGGTGTCCTCAACCATCTTCACTATGCAAATGCTATGGGTTACTTCAAGGATGATCCTTTGCCTCAATATTGCCACCAACTCCTCAAATATTACTTGTCTGATTCAGATGTTTGA

Protein sequence

>Msa1357490

MARIVLLLMALSLSSILPLLATAMFHIKGCVYCDTCRAGFETNATFYIQGAKVGIRCQDRKTMDEVFYTEGVTDSTGTYNIMVENDHHDNICKTVLVSSPISSCNTPDPGRNRSSIVLTHYKNGVLNHLHYANAMGYFKDDPLPQYCHQLLKYYLSDSDV*