AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0540980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540980 MtrunA17_Chr1g0192101 89.583 144 15 0 1 144 325 468 1.67e-71 230
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540980 AT5G27680.5 43.624 149 69 5 1 142 199 339 7.22e-23 94.4
Msa0540980 AT5G27680.1 43.624 149 69 5 1 142 329 469 1.41e-22 93.6
Msa0540980 AT5G27680.4 43.624 149 69 5 1 142 329 469 1.41e-22 93.6
Msa0540980 AT5G27680.3 43.624 149 69 5 1 142 329 469 1.41e-22 93.6
Msa0540980 AT5G27680.2 43.624 149 69 5 1 142 329 469 1.41e-22 93.6
Msa0540980 AT5G27680.6 43.624 149 69 5 1 142 329 469 1.58e-22 93.6

Find 130 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGGATATGTTTGCAATT+TGG 0.193104 4_1:+24211969 Msa0540980:three_prime_UTR
TAATGGACAAACAACCATTT+TGG 0.222881 4_1:-24212036 None:intergenic
ACTAGGGTAAACAATTATTT+TGG 0.229770 4_1:+24211759 Msa0540980:three_prime_UTR
CAAGAATTGATTAAAGTATA+TGG 0.240282 4_1:+24211317 Msa0540980:CDS
GTCTCTTTAATTAGTCATTT+TGG 0.248835 4_1:-24211944 None:intergenic
TGTGCTGTTCATGGATCTTT+TGG 0.255216 4_1:+24212477 Msa0540980:three_prime_UTR
TTGGCCTGGTGGTGTTGGCT+TGG 0.265521 4_1:-24212159 None:intergenic
TGGCCTGGTGGTGTTGGCTT+GGG 0.269523 4_1:-24212158 None:intergenic
GGTCACACATACCATATATT+TGG 0.273969 4_1:-24212638 None:intergenic
CACATATTCAAAGGCCAAAA+TGG 0.289219 4_1:+24212022 Msa0540980:three_prime_UTR
TGGACCTAATTTATGCTTCA+TGG 0.293056 4_1:+24211161 Msa0540980:CDS
TGCATTCACGGATCTGAAAA+TGG 0.301745 4_1:-24210608 None:intergenic
TATCAAACTTGTGCTGTTCA+TGG 0.302031 4_1:+24212468 Msa0540980:three_prime_UTR
AAAATTGACAATTGAGTTCC+TGG 0.308786 4_1:+24211514 Msa0540980:CDS
TAAAATAAGTTATTTATTGT+TGG 0.319683 4_1:+24212741 Msa0540980:three_prime_UTR
TGACAGCACCTCACACATTT+GGG 0.334301 4_1:-24211784 None:intergenic
GTAGCTGTCAACGCCATTAC+AGG 0.343035 4_1:-24211057 None:intergenic
TTTGCAATTTGGATACATTC+AGG 0.343434 4_1:+24211980 Msa0540980:three_prime_UTR
AAAAGCCAACACATACAATT+AGG 0.347952 4_1:-24212311 None:intergenic
GTGGTGTTGGCTTGGGACCT+CGG 0.350952 4_1:-24212151 None:intergenic
TAATAGAACAAAACCCATTT+GGG 0.356288 4_1:-24212182 None:intergenic
CTCAGTTCAGTACAAATAAT+TGG 0.357073 4_1:+24211600 Msa0540980:CDS
ATGACAGCACCTCACACATT+TGG 0.362861 4_1:-24211785 None:intergenic
ATTATAACTTGTCCGTCTTT+AGG 0.363403 4_1:+24212698 Msa0540980:three_prime_UTR
CTCAGAAAACTCACATTGCT+TGG 0.366965 4_1:-24212372 None:intergenic
ACCTCGGGTTAGTCAGTCCT+TGG 0.367311 4_1:-24212135 None:intergenic
ATAATAGAACAAAACCCATT+TGG 0.369734 4_1:-24212183 None:intergenic
ATCAGAAGCACCAGAGCTAA+TGG 0.378965 4_1:-24211384 None:intergenic
ACCCTCGCCGCCGTCGATCT+TGG 0.386943 4_1:+24210660 Msa0540980:five_prime_UTR
TTGGGTTGGCCTGGTGGTGT+TGG 0.389980 4_1:-24212164 None:intergenic
GCTAGCTCTGTTTGCATTGA+GGG 0.392271 4_1:+24210990 Msa0540980:intron
CACCACCAGGCCAACCCAAA+TGG 0.402470 4_1:+24212168 Msa0540980:three_prime_UTR
GCCTCACTACATAAAATTCC+TGG 0.404443 4_1:+24212266 Msa0540980:three_prime_UTR
AGCCGGGACGGACCTACGTT+TGG 0.433562 4_1:+24211675 Msa0540980:three_prime_UTR
CTCACCATGAAGCATAAATT+AGG 0.436955 4_1:-24211165 None:intergenic
CCCCATCATCACAGTCATCT+TGG 0.437207 4_1:-24211442 None:intergenic
AGATAAACTAGCCAAATATA+TGG 0.437515 4_1:+24212627 Msa0540980:three_prime_UTR
TTGTGATGAATGGGAGAAAA+GGG 0.444955 4_1:-24210542 None:intergenic
TGAGTACATATATTAATACT+AGG 0.447214 4_1:+24211742 Msa0540980:three_prime_UTR
GGGTGCTACAATGGGTGAAA+GGG 0.449414 4_1:-24210689 None:intergenic
GCTTTCGACAATCGCAACTT+AGG 0.449847 4_1:-24212508 None:intergenic
TGGTGTTGGCTTGGGACCTC+GGG 0.455099 4_1:-24212150 None:intergenic
TACAGGTATATCGAATTTCA+AGG 0.455791 4_1:-24211040 None:intergenic
GAAATTCGATATACCTGTAA+TGG 0.458052 4_1:+24211044 Msa0540980:exon
TCCAAGATCGACGGCGGCGA+GGG 0.461831 4_1:-24210661 None:intergenic
GATGGCCTTTCCATTAGCTC+TGG 0.464996 4_1:+24211374 Msa0540980:CDS
AAAACCCATTTGGGTTGGCC+TGG 0.468580 4_1:-24212173 None:intergenic
TTAGATGCAGTGACGGATCC+AGG 0.469313 4_1:-24212284 None:intergenic
GAATGGGAGAAAAGGGAAAA+GGG 0.477675 4_1:-24210535 None:intergenic
CTTTCAAAGTGCGGATGACT+TGG 0.477834 4_1:+24211553 Msa0540980:CDS
TTGGCTAGTTTATCTTTACT+AGG 0.478728 4_1:-24212619 None:intergenic
GGTTTGAGCTTATGCATTCA+CGG 0.479515 4_1:-24210620 None:intergenic
TTGAGGGAAAATTTCACTAC+TGG 0.479678 4_1:+24211006 Msa0540980:five_prime_UTR
TCTCGTCAGCGTTTCAACTC+AGG 0.487577 4_1:+24210737 Msa0540980:five_prime_UTR
AACCAAGATGACTGTGATGA+TGG 0.492702 4_1:+24211440 Msa0540980:CDS
AGGGTGCTACAATGGGTGAA+AGG 0.493865 4_1:-24210690 None:intergenic
ACCACCAGGCCAACCCAAAT+GGG 0.497997 4_1:+24212169 Msa0540980:three_prime_UTR
AGATTCCTAATTGTATGTGT+TGG 0.498677 4_1:+24212306 Msa0540980:three_prime_UTR
TGAATGGGAGAAAAGGGAAA+AGG 0.499317 4_1:-24210536 None:intergenic
AACTCACATTGCTTGGGAGG+AGG 0.503935 4_1:-24212365 None:intergenic
AAAAGGGAAAAGGGATCTGC+TGG 0.507190 4_1:-24210526 None:intergenic
TGCTAGCTCTGTTTGCATTG+AGG 0.509852 4_1:+24210989 Msa0540980:intron
GGGTGCTACGATGTGTTGAC+TGG 0.511678 4_1:-24210641 None:intergenic
CAGTGTTTCTTCTTATGATG+TGG 0.514916 4_1:+24211412 Msa0540980:CDS
TCAGAAAACTCACATTGCTT+GGG 0.517541 4_1:-24212371 None:intergenic
ATTTAAAACATGCATCAGAA+AGG 0.518480 4_1:-24212441 None:intergenic
GGTCCCAAGCCAACACCACC+AGG 0.520792 4_1:+24212155 Msa0540980:three_prime_UTR
GCTAGTAGTAACATCTAAGC+CGG 0.521033 4_1:+24211658 Msa0540980:three_prime_UTR
GTCGGCGAGGGTGCTACAAT+GGG 0.522641 4_1:-24210697 None:intergenic
GGGTTAGTCAGTCCTTGGGC+TGG 0.527506 4_1:-24212130 None:intergenic
AGAAAGCAAAGAGAGATTGT+CGG 0.528279 4_1:-24210715 None:intergenic
TGTCGGCGAGGGTGCTACAA+TGG 0.530085 4_1:-24210698 None:intergenic
CCTCGGGTTAGTCAGTCCTT+GGG 0.531967 4_1:-24212134 None:intergenic
GAGTTTATCACGCCTAAAGA+CGG 0.542068 4_1:-24212710 None:intergenic
ATTAATAAAAGTTGCCACAC+AGG 0.542900 4_1:-24210387 None:intergenic
ATAAAAGTTGCCACACAGGA+AGG 0.546114 4_1:-24210383 None:intergenic
ATCCAAACGTAGGTCCGTCC+CGG 0.548203 4_1:-24211677 None:intergenic
ACCAAGATGACTGTGATGAT+GGG 0.551092 4_1:+24211441 Msa0540980:CDS
AACATTCGGTATCCAGCCCA+AGG 0.551219 4_1:+24212118 Msa0540980:three_prime_UTR
GGTGCTGTCATTATAGTCCC+TGG 0.552601 4_1:+24211797 Msa0540980:three_prime_UTR
TTTGTGATGAATGGGAGAAA+AGG 0.554328 4_1:-24210543 None:intergenic
GAAAACTCACATTGCTTGGG+AGG 0.555401 4_1:-24212368 None:intergenic
AGAACAAAACCCATTTGGGT+TGG 0.556450 4_1:-24212178 None:intergenic
TAAATCATAGTAGAACATCA+TGG 0.559270 4_1:+24211273 Msa0540980:CDS
ACCCATTTGGGTTGGCCTGG+TGG 0.563045 4_1:-24212170 None:intergenic
CAAAGTGCGGATGACTTGGA+TGG 0.563076 4_1:+24211557 Msa0540980:CDS
CAAAGAGAGATTGTCGGCGA+GGG 0.569892 4_1:-24210709 None:intergenic
ACAGGTATATCGAATTTCAA+GGG 0.574386 4_1:-24211039 None:intergenic
GTTTCTTCTTATGATGTGGA+CGG 0.577423 4_1:+24211416 Msa0540980:CDS
GGTGCTACAATGGGTGAAAG+GGG 0.578575 4_1:-24210688 None:intergenic
AACAAAAGAGACACTTGGAA+TGG 0.583750 4_1:-24211844 None:intergenic
GAATTGATTAAAGTATATGG+TGG 0.585642 4_1:+24211320 Msa0540980:CDS
AAATCATAGTAGAACATCAT+GGG 0.589453 4_1:+24211274 Msa0540980:CDS
GATATAAATGTAATGCACTC+AGG 0.592782 4_1:+24211464 Msa0540980:CDS
TTTGTGCAGAGATTCGAAGC+TGG 0.595882 4_1:-24210567 None:intergenic
CTCACCTCAGATGATGCAGA+TGG 0.599725 4_1:+24211356 Msa0540980:CDS
GAGTACATATATTAATACTA+GGG 0.600525 4_1:+24211743 Msa0540980:three_prime_UTR
GTGCATGAGTGAGAGAGAGA+TGG 0.601411 4_1:-24210504 None:intergenic
CAAATTGTAAGAAACACAGT+GGG 0.603031 4_1:-24211718 None:intergenic
TAAAAGTTGCCACACAGGAA+GGG 0.603736 4_1:-24210382 None:intergenic
TGGGTCGAGTGAGAGAGAGA+TGG 0.610900 4_1:-24210484 None:intergenic
AATTGATTAAAGTATATGGT+GGG 0.613305 4_1:+24211321 Msa0540980:CDS
AGGAATCTTAGATGCAGTGA+CGG 0.616125 4_1:-24212291 None:intergenic
ACCTACGTTTGGATGAGTGT+AGG 0.619705 4_1:+24211686 Msa0540980:three_prime_UTR
CTAGTAGTAACATCTAAGCC+GGG 0.621300 4_1:+24211659 Msa0540980:three_prime_UTR
ACAAATTGTAAGAAACACAG+TGG 0.623402 4_1:-24211719 None:intergenic
GCAAAGAGAGATTGTCGGCG+AGG 0.623815 4_1:-24210710 None:intergenic
ACAGCACCTCACATATTCAA+AGG 0.625545 4_1:+24212013 Msa0540980:three_prime_UTR
ATCCAAGATCGACGGCGGCG+AGG 0.625940 4_1:-24210662 None:intergenic
TTACAAACAAAAGAGACACT+TGG 0.627940 4_1:-24211849 None:intergenic
AAGGCCATCTGCATCATCTG+AGG 0.634518 4_1:-24211360 None:intergenic
CACTCTACACCCTTCCTGTG+TGG 0.636581 4_1:+24210373 Msa0540980:five_prime_UTR
TTATAATTGTCTATGCATGT+TGG 0.638298 4_1:+24212244 Msa0540980:three_prime_UTR
AGGGGAGAATCCAAGATCGA+CGG 0.646975 4_1:-24210670 None:intergenic
AAGCACCAGAGCTAATGGAA+AGG 0.652085 4_1:-24211379 None:intergenic
TGCATGAGTGAGAGAGAGAT+GGG 0.656718 4_1:-24210503 None:intergenic
CACACAGGAAGGGTGTAGAG+TGG 0.662076 4_1:-24210372 None:intergenic
GGAGAATCCAAGATCGACGG+CGG 0.664665 4_1:-24210667 None:intergenic
GTAATGCACTCAGGAAACAC+CGG 0.665620 4_1:+24211473 Msa0540980:CDS
ACTAATTAAAGAGACACTTG+AGG 0.665834 4_1:+24211952 Msa0540980:three_prime_UTR
CCAAGATGACTGTGATGATG+GGG 0.667414 4_1:+24211442 Msa0540980:CDS
ATTGTAAGAAACACAGTGGG+GGG 0.670232 4_1:-24211715 None:intergenic
GACAGCACCTCACACATTTG+GGG 0.670331 4_1:-24211783 None:intergenic
AATTGTAAGAAACACAGTGG+GGG 0.681333 4_1:-24211716 None:intergenic
CCCAAGGACTGACTAACCCG+AGG 0.684150 4_1:+24212134 Msa0540980:three_prime_UTR
TAGTAACATCTAAGCCGGGA+CGG 0.696997 4_1:+24211663 Msa0540980:three_prime_UTR
AAAGCTAGTGTTACACATCG+AGG 0.698742 4_1:+24212526 Msa0540980:three_prime_UTR
TGTTGATGTCTTTCAAAGTG+CGG 0.708375 4_1:+24211544 Msa0540980:CDS
GCCTACACTCATCCAAACGT+AGG 0.737830 4_1:-24211687 None:intergenic
AAATTGTAAGAAACACAGTG+GGG 0.738291 4_1:-24211717 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CCAAAAAATAAAATAAATAA+TGG - chr4_1:24212056-24212075 None:intergenic 10.0%
!!! CCATTATTTATTTTATTTTT+TGG + chr4_1:24212053-24212072 Msa0540980:three_prime_UTR 10.0%
!! TAAAATAAGTTATTTATTGT+TGG + chr4_1:24212741-24212760 Msa0540980:three_prime_UTR 10.0%
!! CCAAAAAATAAAATAAATAA+TGG - chr4_1:24212056-24212075 None:intergenic 10.0%
!!! CCATTATTTATTTTATTTTT+TGG + chr4_1:24212053-24212072 Msa0540980:three_prime_UTR 10.0%
!! TAAAATAAGTTATTTATTGT+TGG + chr4_1:24212741-24212760 Msa0540980:three_prime_UTR 10.0%
!!! TAATGATTTTTTAAATGACA+TGG - chr4_1:24210432-24210451 None:intergenic 15.0%
!!! CATCATTTTTTTTTAACATT+CGG + chr4_1:24212104-24212123 Msa0540980:three_prime_UTR 15.0%
!! TATAATTTCAGAAAAAATAG+TGG - chr4_1:24212684-24212703 None:intergenic 15.0%
!!! TAATGATTTTTTAAATGACA+TGG - chr4_1:24210432-24210451 None:intergenic 15.0%
!!! CATCATTTTTTTTTAACATT+CGG + chr4_1:24212104-24212123 Msa0540980:three_prime_UTR 15.0%
!! TATAATTTCAGAAAAAATAG+TGG - chr4_1:24212684-24212703 None:intergenic 15.0%
!!! TTTTTAAATGACATGGTTTT+TGG - chr4_1:24210425-24210444 None:intergenic 20.0%
!!! TCTTTGTACATTTTGTTTTT+TGG + chr4_1:24210931-24210950 Msa0540980:intron 20.0%
!! CAAGAATTGATTAAAGTATA+TGG + chr4_1:24211317-24211336 Msa0540980:CDS 20.0%
!! AATTGATTAAAGTATATGGT+GGG + chr4_1:24211321-24211340 Msa0540980:CDS 20.0%
!! TGAGTACATATATTAATACT+AGG + chr4_1:24211742-24211761 Msa0540980:three_prime_UTR 20.0%
!! GAGTACATATATTAATACTA+GGG + chr4_1:24211743-24211762 Msa0540980:three_prime_UTR 20.0%
!!! TGTGTTTTTTGATAATCTTT+TGG - chr4_1:24211916-24211935 None:intergenic 20.0%
!! ATTATCAAAAAACACATTTG+AGG + chr4_1:24211920-24211939 Msa0540980:three_prime_UTR 20.0%
!!! TTTTTAAATGACATGGTTTT+TGG - chr4_1:24210425-24210444 None:intergenic 20.0%
!!! TCTTTGTACATTTTGTTTTT+TGG + chr4_1:24210931-24210950 Msa0540980:intron 20.0%
!! CAAGAATTGATTAAAGTATA+TGG + chr4_1:24211317-24211336 Msa0540980:CDS 20.0%
!! AATTGATTAAAGTATATGGT+GGG + chr4_1:24211321-24211340 Msa0540980:CDS 20.0%
!! TGAGTACATATATTAATACT+AGG + chr4_1:24211742-24211761 Msa0540980:three_prime_UTR 20.0%
!! GAGTACATATATTAATACTA+GGG + chr4_1:24211743-24211762 Msa0540980:three_prime_UTR 20.0%
!!! TGTGTTTTTTGATAATCTTT+TGG - chr4_1:24211916-24211935 None:intergenic 20.0%
!! ATTATCAAAAAACACATTTG+AGG + chr4_1:24211920-24211939 Msa0540980:three_prime_UTR 20.0%
! TTGAACAACCAAATCTATTT+AGG - chr4_1:24210829-24210848 None:intergenic 25.0%
! TTCAACTAGAATAGTAAATC+TGG + chr4_1:24210844-24210863 Msa0540980:intron 25.0%
!! GTGATTTTATAATGTCTTCT+CGG - chr4_1:24211098-24211117 None:intergenic 25.0%
! TAAATCATAGTAGAACATCA+TGG + chr4_1:24211273-24211292 Msa0540980:CDS 25.0%
! AAATCATAGTAGAACATCAT+GGG + chr4_1:24211274-24211293 Msa0540980:CDS 25.0%
! GAATTGATTAAAGTATATGG+TGG + chr4_1:24211320-24211339 Msa0540980:CDS 25.0%
!!! TCTTCTTTTTTTATGATTGC+CGG - chr4_1:24211495-24211514 None:intergenic 25.0%
!! ACTAGGGTAAACAATTATTT+TGG + chr4_1:24211759-24211778 Msa0540980:three_prime_UTR 25.0%
!! GTCTCTTTAATTAGTCATTT+TGG - chr4_1:24211947-24211966 None:intergenic 25.0%
! TAATAGAACAAAACCCATTT+GGG - chr4_1:24212185-24212204 None:intergenic 25.0%
! ATAATAGAACAAAACCCATT+TGG - chr4_1:24212186-24212205 None:intergenic 25.0%
! TTATAATTGTCTATGCATGT+TGG + chr4_1:24212244-24212263 Msa0540980:three_prime_UTR 25.0%
!! ATTTAAAACATGCATCAGAA+AGG - chr4_1:24212444-24212463 None:intergenic 25.0%
! GAAGATTAAAAATAGTGTAG+TGG + chr4_1:24212548-24212567 Msa0540980:three_prime_UTR 25.0%
! AGATAAACTAGCCAAATATA+TGG + chr4_1:24212627-24212646 Msa0540980:three_prime_UTR 25.0%
! GTCACACATATTAAAAAATG+TGG - chr4_1:24212662-24212681 None:intergenic 25.0%
! TTGAACAACCAAATCTATTT+AGG - chr4_1:24210829-24210848 None:intergenic 25.0%
! TTCAACTAGAATAGTAAATC+TGG + chr4_1:24210844-24210863 Msa0540980:intron 25.0%
!! GTGATTTTATAATGTCTTCT+CGG - chr4_1:24211098-24211117 None:intergenic 25.0%
! TAAATCATAGTAGAACATCA+TGG + chr4_1:24211273-24211292 Msa0540980:CDS 25.0%
! AAATCATAGTAGAACATCAT+GGG + chr4_1:24211274-24211293 Msa0540980:CDS 25.0%
! GAATTGATTAAAGTATATGG+TGG + chr4_1:24211320-24211339 Msa0540980:CDS 25.0%
!!! TCTTCTTTTTTTATGATTGC+CGG - chr4_1:24211495-24211514 None:intergenic 25.0%
!! ACTAGGGTAAACAATTATTT+TGG + chr4_1:24211759-24211778 Msa0540980:three_prime_UTR 25.0%
!! GTCTCTTTAATTAGTCATTT+TGG - chr4_1:24211947-24211966 None:intergenic 25.0%
! TAATAGAACAAAACCCATTT+GGG - chr4_1:24212185-24212204 None:intergenic 25.0%
! ATAATAGAACAAAACCCATT+TGG - chr4_1:24212186-24212205 None:intergenic 25.0%
! TTATAATTGTCTATGCATGT+TGG + chr4_1:24212244-24212263 Msa0540980:three_prime_UTR 25.0%
!! ATTTAAAACATGCATCAGAA+AGG - chr4_1:24212444-24212463 None:intergenic 25.0%
! GAAGATTAAAAATAGTGTAG+TGG + chr4_1:24212548-24212567 Msa0540980:three_prime_UTR 25.0%
! AGATAAACTAGCCAAATATA+TGG + chr4_1:24212627-24212646 Msa0540980:three_prime_UTR 25.0%
! GTCACACATATTAAAAAATG+TGG - chr4_1:24212662-24212681 None:intergenic 25.0%
ATTAATAAAAGTTGCCACAC+AGG - chr4_1:24210390-24210409 None:intergenic 30.0%
!! CATCTCACTTTTGTTTGATT+TGG + chr4_1:24210770-24210789 Msa0540980:intron 30.0%
!! TTTGATTTGGTTGTTCAATC+TGG + chr4_1:24210783-24210802 Msa0540980:intron 30.0%
! GTAAATCTGGAACTGATATT+CGG + chr4_1:24210857-24210876 Msa0540980:intron 30.0%
ACAGGTATATCGAATTTCAA+GGG - chr4_1:24211042-24211061 None:intergenic 30.0%
TACAGGTATATCGAATTTCA+AGG - chr4_1:24211043-24211062 None:intergenic 30.0%
GAAATTCGATATACCTGTAA+TGG + chr4_1:24211044-24211063 Msa0540980:exon 30.0%
!!! CTTGTTCTCACATCATTTTT+TGG + chr4_1:24211141-24211160 Msa0540980:CDS 30.0%
GATATAAATGTAATGCACTC+AGG + chr4_1:24211464-24211483 Msa0540980:CDS 30.0%
AAAATTGACAATTGAGTTCC+TGG + chr4_1:24211514-24211533 Msa0540980:CDS 30.0%
CTCAGTTCAGTACAAATAAT+TGG + chr4_1:24211600-24211619 Msa0540980:CDS 30.0%
AAATTGTAAGAAACACAGTG+GGG - chr4_1:24211720-24211739 None:intergenic 30.0%
CAAATTGTAAGAAACACAGT+GGG - chr4_1:24211721-24211740 None:intergenic 30.0%
ACAAATTGTAAGAAACACAG+TGG - chr4_1:24211722-24211741 None:intergenic 30.0%
TTACAAACAAAAGAGACACT+TGG - chr4_1:24211852-24211871 None:intergenic 30.0%
AATAGCGAAAAACACATTTG+AGG + chr4_1:24211889-24211908 Msa0540980:three_prime_UTR 30.0%
ACTAATTAAAGAGACACTTG+AGG + chr4_1:24211952-24211971 Msa0540980:three_prime_UTR 30.0%
TTGAGGATATGTTTGCAATT+TGG + chr4_1:24211969-24211988 Msa0540980:three_prime_UTR 30.0%
TTTGCAATTTGGATACATTC+AGG + chr4_1:24211980-24211999 Msa0540980:three_prime_UTR 30.0%
!! TAATGGACAAACAACCATTT+TGG - chr4_1:24212039-24212058 None:intergenic 30.0%
AGATTCCTAATTGTATGTGT+TGG + chr4_1:24212306-24212325 Msa0540980:three_prime_UTR 30.0%
AAAAGCCAACACATACAATT+AGG - chr4_1:24212314-24212333 None:intergenic 30.0%
!!! TGGCTTTTTTTAGTTACATG+TGG + chr4_1:24212326-24212345 Msa0540980:three_prime_UTR 30.0%
! TTTTAAGCAGCTCATTTCAT+TGG + chr4_1:24212401-24212420 Msa0540980:three_prime_UTR 30.0%
!! TTGGCTAGTTTATCTTTACT+AGG - chr4_1:24212622-24212641 None:intergenic 30.0%
! ATTATAACTTGTCCGTCTTT+AGG + chr4_1:24212698-24212717 Msa0540980:three_prime_UTR 30.0%
ATTAATAAAAGTTGCCACAC+AGG - chr4_1:24210390-24210409 None:intergenic 30.0%
!! CATCTCACTTTTGTTTGATT+TGG + chr4_1:24210770-24210789 Msa0540980:intron 30.0%
!! TTTGATTTGGTTGTTCAATC+TGG + chr4_1:24210783-24210802 Msa0540980:intron 30.0%
! GTAAATCTGGAACTGATATT+CGG + chr4_1:24210857-24210876 Msa0540980:intron 30.0%
ACAGGTATATCGAATTTCAA+GGG - chr4_1:24211042-24211061 None:intergenic 30.0%
TACAGGTATATCGAATTTCA+AGG - chr4_1:24211043-24211062 None:intergenic 30.0%
GAAATTCGATATACCTGTAA+TGG + chr4_1:24211044-24211063 Msa0540980:exon 30.0%
!!! CTTGTTCTCACATCATTTTT+TGG + chr4_1:24211141-24211160 Msa0540980:CDS 30.0%
GATATAAATGTAATGCACTC+AGG + chr4_1:24211464-24211483 Msa0540980:CDS 30.0%
AAAATTGACAATTGAGTTCC+TGG + chr4_1:24211514-24211533 Msa0540980:CDS 30.0%
CTCAGTTCAGTACAAATAAT+TGG + chr4_1:24211600-24211619 Msa0540980:CDS 30.0%
AAATTGTAAGAAACACAGTG+GGG - chr4_1:24211720-24211739 None:intergenic 30.0%
CAAATTGTAAGAAACACAGT+GGG - chr4_1:24211721-24211740 None:intergenic 30.0%
ACAAATTGTAAGAAACACAG+TGG - chr4_1:24211722-24211741 None:intergenic 30.0%
TTACAAACAAAAGAGACACT+TGG - chr4_1:24211852-24211871 None:intergenic 30.0%
AATAGCGAAAAACACATTTG+AGG + chr4_1:24211889-24211908 Msa0540980:three_prime_UTR 30.0%
ACTAATTAAAGAGACACTTG+AGG + chr4_1:24211952-24211971 Msa0540980:three_prime_UTR 30.0%
TTGAGGATATGTTTGCAATT+TGG + chr4_1:24211969-24211988 Msa0540980:three_prime_UTR 30.0%
TTTGCAATTTGGATACATTC+AGG + chr4_1:24211980-24211999 Msa0540980:three_prime_UTR 30.0%
!! TAATGGACAAACAACCATTT+TGG - chr4_1:24212039-24212058 None:intergenic 30.0%
AGATTCCTAATTGTATGTGT+TGG + chr4_1:24212306-24212325 Msa0540980:three_prime_UTR 30.0%
AAAAGCCAACACATACAATT+AGG - chr4_1:24212314-24212333 None:intergenic 30.0%
!!! TGGCTTTTTTTAGTTACATG+TGG + chr4_1:24212326-24212345 Msa0540980:three_prime_UTR 30.0%
! TTTTAAGCAGCTCATTTCAT+TGG + chr4_1:24212401-24212420 Msa0540980:three_prime_UTR 30.0%
!! TTGGCTAGTTTATCTTTACT+AGG - chr4_1:24212622-24212641 None:intergenic 30.0%
! ATTATAACTTGTCCGTCTTT+AGG + chr4_1:24212698-24212717 Msa0540980:three_prime_UTR 30.0%
TTGTGATGAATGGGAGAAAA+GGG - chr4_1:24210545-24210564 None:intergenic 35.0%
TTTGTGATGAATGGGAGAAA+AGG - chr4_1:24210546-24210565 None:intergenic 35.0%
!!! AAGCTGGTTTTGTGATGAAT+GGG - chr4_1:24210554-24210573 None:intergenic 35.0%
AGAAAGCAAAGAGAGATTGT+CGG - chr4_1:24210718-24210737 None:intergenic 35.0%
ATCTATTTAGGCACTCTCTA+GGG - chr4_1:24210817-24210836 None:intergenic 35.0%
AATCTATTTAGGCACTCTCT+AGG - chr4_1:24210818-24210837 None:intergenic 35.0%
!! AGAGAGTGCCTAAATAGATT+TGG + chr4_1:24210818-24210837 Msa0540980:intron 35.0%
TTGAGGGAAAATTTCACTAC+TGG + chr4_1:24211006-24211025 Msa0540980:five_prime_UTR 35.0%
TGGACCTAATTTATGCTTCA+TGG + chr4_1:24211161-24211180 Msa0540980:CDS 35.0%
CTCACCATGAAGCATAAATT+AGG - chr4_1:24211168-24211187 None:intergenic 35.0%
CAGTGTTTCTTCTTATGATG+TGG + chr4_1:24211412-24211431 Msa0540980:CDS 35.0%
GTTTCTTCTTATGATGTGGA+CGG + chr4_1:24211416-24211435 Msa0540980:CDS 35.0%
! AGACATCAACATCATTTTCC+AGG - chr4_1:24211535-24211554 None:intergenic 35.0%
TGTTGATGTCTTTCAAAGTG+CGG + chr4_1:24211544-24211563 Msa0540980:CDS 35.0%
AATTGTAAGAAACACAGTGG+GGG - chr4_1:24211719-24211738 None:intergenic 35.0%
!! TTGCAGTTTTGATACATCCA+GGG - chr4_1:24211817-24211836 None:intergenic 35.0%
!! TTTGCAGTTTTGATACATCC+AGG - chr4_1:24211818-24211837 None:intergenic 35.0%
AACAAAAGAGACACTTGGAA+TGG - chr4_1:24211847-24211866 None:intergenic 35.0%
!! TTTTGGCCTTTGAATATGTG+AGG - chr4_1:24212022-24212041 None:intergenic 35.0%
CACATATTCAAAGGCCAAAA+TGG + chr4_1:24212022-24212041 Msa0540980:three_prime_UTR 35.0%
! TCCAGGAATTTTATGTAGTG+AGG - chr4_1:24212270-24212289 None:intergenic 35.0%
TCAGAAAACTCACATTGCTT+GGG - chr4_1:24212374-24212393 None:intergenic 35.0%
! TATCAAACTTGTGCTGTTCA+TGG + chr4_1:24212468-24212487 Msa0540980:three_prime_UTR 35.0%
GGTCACACATACCATATATT+TGG - chr4_1:24212641-24212660 None:intergenic 35.0%
TTGTGATGAATGGGAGAAAA+GGG - chr4_1:24210545-24210564 None:intergenic 35.0%
TTTGTGATGAATGGGAGAAA+AGG - chr4_1:24210546-24210565 None:intergenic 35.0%
!!! AAGCTGGTTTTGTGATGAAT+GGG - chr4_1:24210554-24210573 None:intergenic 35.0%
AGAAAGCAAAGAGAGATTGT+CGG - chr4_1:24210718-24210737 None:intergenic 35.0%
ATCTATTTAGGCACTCTCTA+GGG - chr4_1:24210817-24210836 None:intergenic 35.0%
AATCTATTTAGGCACTCTCT+AGG - chr4_1:24210818-24210837 None:intergenic 35.0%
!! AGAGAGTGCCTAAATAGATT+TGG + chr4_1:24210818-24210837 Msa0540980:intron 35.0%
TTGAGGGAAAATTTCACTAC+TGG + chr4_1:24211006-24211025 Msa0540980:five_prime_UTR 35.0%
TGGACCTAATTTATGCTTCA+TGG + chr4_1:24211161-24211180 Msa0540980:CDS 35.0%
CTCACCATGAAGCATAAATT+AGG - chr4_1:24211168-24211187 None:intergenic 35.0%
CAGTGTTTCTTCTTATGATG+TGG + chr4_1:24211412-24211431 Msa0540980:CDS 35.0%
GTTTCTTCTTATGATGTGGA+CGG + chr4_1:24211416-24211435 Msa0540980:CDS 35.0%
! AGACATCAACATCATTTTCC+AGG - chr4_1:24211535-24211554 None:intergenic 35.0%
TGTTGATGTCTTTCAAAGTG+CGG + chr4_1:24211544-24211563 Msa0540980:CDS 35.0%
AATTGTAAGAAACACAGTGG+GGG - chr4_1:24211719-24211738 None:intergenic 35.0%
!! TTGCAGTTTTGATACATCCA+GGG - chr4_1:24211817-24211836 None:intergenic 35.0%
!! TTTGCAGTTTTGATACATCC+AGG - chr4_1:24211818-24211837 None:intergenic 35.0%
AACAAAAGAGACACTTGGAA+TGG - chr4_1:24211847-24211866 None:intergenic 35.0%
!! TTTTGGCCTTTGAATATGTG+AGG - chr4_1:24212022-24212041 None:intergenic 35.0%
CACATATTCAAAGGCCAAAA+TGG + chr4_1:24212022-24212041 Msa0540980:three_prime_UTR 35.0%
! TCCAGGAATTTTATGTAGTG+AGG - chr4_1:24212270-24212289 None:intergenic 35.0%
TCAGAAAACTCACATTGCTT+GGG - chr4_1:24212374-24212393 None:intergenic 35.0%
! TATCAAACTTGTGCTGTTCA+TGG + chr4_1:24212468-24212487 Msa0540980:three_prime_UTR 35.0%
GGTCACACATACCATATATT+TGG - chr4_1:24212641-24212660 None:intergenic 35.0%
TAAAAGTTGCCACACAGGAA+GGG - chr4_1:24210385-24210404 None:intergenic 40.0%
ATAAAAGTTGCCACACAGGA+AGG - chr4_1:24210386-24210405 None:intergenic 40.0%
GAATGGGAGAAAAGGGAAAA+GGG - chr4_1:24210538-24210557 None:intergenic 40.0%
TGAATGGGAGAAAAGGGAAA+AGG - chr4_1:24210539-24210558 None:intergenic 40.0%
!!! GAAGCTGGTTTTGTGATGAA+TGG - chr4_1:24210555-24210574 None:intergenic 40.0%
TGCATTCACGGATCTGAAAA+TGG - chr4_1:24210611-24210630 None:intergenic 40.0%
GGTTTGAGCTTATGCATTCA+CGG - chr4_1:24210623-24210642 None:intergenic 40.0%
!!! GTTTTGCTTGGTTAGCTTGT+AGG + chr4_1:24210903-24210922 Msa0540980:intron 40.0%
! TGGAAGTGTAATGGAGGTTA+TGG - chr4_1:24211232-24211251 None:intergenic 40.0%
! GTGAATTGGAAGTGTAATGG+AGG - chr4_1:24211238-24211257 None:intergenic 40.0%
! GCAGTGAATTGGAAGTGTAA+TGG - chr4_1:24211241-24211260 None:intergenic 40.0%
AACCAAGATGACTGTGATGA+TGG + chr4_1:24211440-24211459 Msa0540980:CDS 40.0%
ACCAAGATGACTGTGATGAT+GGG + chr4_1:24211441-24211460 Msa0540980:CDS 40.0%
GCTAGTAGTAACATCTAAGC+CGG + chr4_1:24211658-24211677 Msa0540980:three_prime_UTR 40.0%
CTAGTAGTAACATCTAAGCC+GGG + chr4_1:24211659-24211678 Msa0540980:three_prime_UTR 40.0%
ATTGTAAGAAACACAGTGGG+GGG - chr4_1:24211718-24211737 None:intergenic 40.0%
ACAGCACCTCACATATTCAA+AGG + chr4_1:24212013-24212032 Msa0540980:three_prime_UTR 40.0%
AGAACAAAACCCATTTGGGT+TGG - chr4_1:24212181-24212200 None:intergenic 40.0%
GCCTCACTACATAAAATTCC+TGG + chr4_1:24212266-24212285 Msa0540980:three_prime_UTR 40.0%
AGGAATCTTAGATGCAGTGA+CGG - chr4_1:24212294-24212313 None:intergenic 40.0%
CTCAGAAAACTCACATTGCT+TGG - chr4_1:24212375-24212394 None:intergenic 40.0%
!! TGTGCTGTTCATGGATCTTT+TGG + chr4_1:24212477-24212496 Msa0540980:three_prime_UTR 40.0%
AAAGCTAGTGTTACACATCG+AGG + chr4_1:24212526-24212545 Msa0540980:three_prime_UTR 40.0%
GAGTTTATCACGCCTAAAGA+CGG - chr4_1:24212713-24212732 None:intergenic 40.0%
TAAAAGTTGCCACACAGGAA+GGG - chr4_1:24210385-24210404 None:intergenic 40.0%
ATAAAAGTTGCCACACAGGA+AGG - chr4_1:24210386-24210405 None:intergenic 40.0%
GAATGGGAGAAAAGGGAAAA+GGG - chr4_1:24210538-24210557 None:intergenic 40.0%
TGAATGGGAGAAAAGGGAAA+AGG - chr4_1:24210539-24210558 None:intergenic 40.0%
!!! GAAGCTGGTTTTGTGATGAA+TGG - chr4_1:24210555-24210574 None:intergenic 40.0%
TGCATTCACGGATCTGAAAA+TGG - chr4_1:24210611-24210630 None:intergenic 40.0%
GGTTTGAGCTTATGCATTCA+CGG - chr4_1:24210623-24210642 None:intergenic 40.0%
!!! GTTTTGCTTGGTTAGCTTGT+AGG + chr4_1:24210903-24210922 Msa0540980:intron 40.0%
! TGGAAGTGTAATGGAGGTTA+TGG - chr4_1:24211232-24211251 None:intergenic 40.0%
! GTGAATTGGAAGTGTAATGG+AGG - chr4_1:24211238-24211257 None:intergenic 40.0%
! GCAGTGAATTGGAAGTGTAA+TGG - chr4_1:24211241-24211260 None:intergenic 40.0%
AACCAAGATGACTGTGATGA+TGG + chr4_1:24211440-24211459 Msa0540980:CDS 40.0%
ACCAAGATGACTGTGATGAT+GGG + chr4_1:24211441-24211460 Msa0540980:CDS 40.0%
GCTAGTAGTAACATCTAAGC+CGG + chr4_1:24211658-24211677 Msa0540980:three_prime_UTR 40.0%
CTAGTAGTAACATCTAAGCC+GGG + chr4_1:24211659-24211678 Msa0540980:three_prime_UTR 40.0%
ATTGTAAGAAACACAGTGGG+GGG - chr4_1:24211718-24211737 None:intergenic 40.0%
ACAGCACCTCACATATTCAA+AGG + chr4_1:24212013-24212032 Msa0540980:three_prime_UTR 40.0%
AGAACAAAACCCATTTGGGT+TGG - chr4_1:24212181-24212200 None:intergenic 40.0%
GCCTCACTACATAAAATTCC+TGG + chr4_1:24212266-24212285 Msa0540980:three_prime_UTR 40.0%
AGGAATCTTAGATGCAGTGA+CGG - chr4_1:24212294-24212313 None:intergenic 40.0%
CTCAGAAAACTCACATTGCT+TGG - chr4_1:24212375-24212394 None:intergenic 40.0%
!! TGTGCTGTTCATGGATCTTT+TGG + chr4_1:24212477-24212496 Msa0540980:three_prime_UTR 40.0%
AAAGCTAGTGTTACACATCG+AGG + chr4_1:24212526-24212545 Msa0540980:three_prime_UTR 40.0%
GAGTTTATCACGCCTAAAGA+CGG - chr4_1:24212713-24212732 None:intergenic 40.0%
TGCATGAGTGAGAGAGAGAT+GGG - chr4_1:24210506-24210525 None:intergenic 45.0%
AAAAGGGAAAAGGGATCTGC+TGG - chr4_1:24210529-24210548 None:intergenic 45.0%
TTTGTGCAGAGATTCGAAGC+TGG - chr4_1:24210570-24210589 None:intergenic 45.0%
ACACCTGCACTAACTAACAC+AGG - chr4_1:24210885-24210904 None:intergenic 45.0%
! GTTAGTGCAGGTGTTTTGCT+TGG + chr4_1:24210891-24210910 Msa0540980:intron 45.0%
!! GCTTGGTTAGCTTGTAGGAT+TGG + chr4_1:24210908-24210927 Msa0540980:intron 45.0%
!! GGCTTTTAAGTCCTTTCCTG+CGG + chr4_1:24210952-24210971 Msa0540980:intron 45.0%
AACCAAAATAGCCGCAGGAA+AGG - chr4_1:24210966-24210985 None:intergenic 45.0%
!! TGCTAGCTCTGTTTGCATTG+AGG + chr4_1:24210989-24211008 Msa0540980:intron 45.0%
!! GCTAGCTCTGTTTGCATTGA+GGG + chr4_1:24210990-24211009 Msa0540980:intron 45.0%
! CTGTTTGAAGCGCAGTGAAT+TGG - chr4_1:24211252-24211271 None:intergenic 45.0%
CAATTCACTGCGCTTCAAAC+AGG + chr4_1:24211250-24211269 Msa0540980:intron 45.0%
AAGCACCAGAGCTAATGGAA+AGG - chr4_1:24211382-24211401 None:intergenic 45.0%
!! ATCAGAAGCACCAGAGCTAA+TGG - chr4_1:24211387-24211406 None:intergenic 45.0%
! CCAAGATGACTGTGATGATG+GGG + chr4_1:24211442-24211461 Msa0540980:CDS 45.0%
GTAATGCACTCAGGAAACAC+CGG + chr4_1:24211473-24211492 Msa0540980:CDS 45.0%
CTTTCAAAGTGCGGATGACT+TGG + chr4_1:24211553-24211572 Msa0540980:CDS 45.0%
TAGTAACATCTAAGCCGGGA+CGG + chr4_1:24211663-24211682 Msa0540980:three_prime_UTR 45.0%
ACCTACGTTTGGATGAGTGT+AGG + chr4_1:24211686-24211705 Msa0540980:three_prime_UTR 45.0%
! TTTTGGTCCCCAAATGTGTG+AGG + chr4_1:24211776-24211795 Msa0540980:three_prime_UTR 45.0%
TGACAGCACCTCACACATTT+GGG - chr4_1:24211787-24211806 None:intergenic 45.0%
ATGACAGCACCTCACACATT+TGG - chr4_1:24211788-24211807 None:intergenic 45.0%
GAAAACTCACATTGCTTGGG+AGG - chr4_1:24212371-24212390 None:intergenic 45.0%
GCTTTCGACAATCGCAACTT+AGG - chr4_1:24212511-24212530 None:intergenic 45.0%
TGCATGAGTGAGAGAGAGAT+GGG - chr4_1:24210506-24210525 None:intergenic 45.0%
AAAAGGGAAAAGGGATCTGC+TGG - chr4_1:24210529-24210548 None:intergenic 45.0%
TTTGTGCAGAGATTCGAAGC+TGG - chr4_1:24210570-24210589 None:intergenic 45.0%
ACACCTGCACTAACTAACAC+AGG - chr4_1:24210885-24210904 None:intergenic 45.0%
! GTTAGTGCAGGTGTTTTGCT+TGG + chr4_1:24210891-24210910 Msa0540980:intron 45.0%
!! GCTTGGTTAGCTTGTAGGAT+TGG + chr4_1:24210908-24210927 Msa0540980:intron 45.0%
!! GGCTTTTAAGTCCTTTCCTG+CGG + chr4_1:24210952-24210971 Msa0540980:intron 45.0%
AACCAAAATAGCCGCAGGAA+AGG - chr4_1:24210966-24210985 None:intergenic 45.0%
!! TGCTAGCTCTGTTTGCATTG+AGG + chr4_1:24210989-24211008 Msa0540980:intron 45.0%
!! GCTAGCTCTGTTTGCATTGA+GGG + chr4_1:24210990-24211009 Msa0540980:intron 45.0%
! CTGTTTGAAGCGCAGTGAAT+TGG - chr4_1:24211252-24211271 None:intergenic 45.0%
CAATTCACTGCGCTTCAAAC+AGG + chr4_1:24211250-24211269 Msa0540980:intron 45.0%
AAGCACCAGAGCTAATGGAA+AGG - chr4_1:24211382-24211401 None:intergenic 45.0%
!! ATCAGAAGCACCAGAGCTAA+TGG - chr4_1:24211387-24211406 None:intergenic 45.0%
! CCAAGATGACTGTGATGATG+GGG + chr4_1:24211442-24211461 Msa0540980:CDS 45.0%
GTAATGCACTCAGGAAACAC+CGG + chr4_1:24211473-24211492 Msa0540980:CDS 45.0%
CTTTCAAAGTGCGGATGACT+TGG + chr4_1:24211553-24211572 Msa0540980:CDS 45.0%
TAGTAACATCTAAGCCGGGA+CGG + chr4_1:24211663-24211682 Msa0540980:three_prime_UTR 45.0%
ACCTACGTTTGGATGAGTGT+AGG + chr4_1:24211686-24211705 Msa0540980:three_prime_UTR 45.0%
! TTTTGGTCCCCAAATGTGTG+AGG + chr4_1:24211776-24211795 Msa0540980:three_prime_UTR 45.0%
TGACAGCACCTCACACATTT+GGG - chr4_1:24211787-24211806 None:intergenic 45.0%
ATGACAGCACCTCACACATT+TGG - chr4_1:24211788-24211807 None:intergenic 45.0%
GAAAACTCACATTGCTTGGG+AGG - chr4_1:24212371-24212390 None:intergenic 45.0%
GCTTTCGACAATCGCAACTT+AGG - chr4_1:24212511-24212530 None:intergenic 45.0%
!!! CTTTTATTAATAAAAAAATT+TGG + chr4_1:24210399-24210418 Msa0540980:five_prime_UTR 5.0%
!!! CATTATTTATTTTATTTTTT+GGG + chr4_1:24212054-24212073 Msa0540980:three_prime_UTR 5.0%
!!! CTTTTATTAATAAAAAAATT+TGG + chr4_1:24210399-24210418 Msa0540980:five_prime_UTR 5.0%
!!! CATTATTTATTTTATTTTTT+GGG + chr4_1:24212054-24212073 Msa0540980:three_prime_UTR 5.0%
GTGCATGAGTGAGAGAGAGA+TGG - chr4_1:24210507-24210526 None:intergenic 50.0%
AGGGGAGAATCCAAGATCGA+CGG - chr4_1:24210673-24210692 None:intergenic 50.0%
! GGTGCTACAATGGGTGAAAG+GGG - chr4_1:24210691-24210710 None:intergenic 50.0%
! GGGTGCTACAATGGGTGAAA+GGG - chr4_1:24210692-24210711 None:intergenic 50.0%
! AGGGTGCTACAATGGGTGAA+AGG - chr4_1:24210693-24210712 None:intergenic 50.0%
CAAAGAGAGATTGTCGGCGA+GGG - chr4_1:24210712-24210731 None:intergenic 50.0%
TCTCGTCAGCGTTTCAACTC+AGG + chr4_1:24210737-24210756 Msa0540980:five_prime_UTR 50.0%
GCTCCTGTGTTAGTTAGTGC+AGG + chr4_1:24210879-24210898 Msa0540980:intron 50.0%
! GTCCTTTCCTGCGGCTATTT+TGG + chr4_1:24210961-24210980 Msa0540980:intron 50.0%
CACAGAACCAAAATAGCCGC+AGG - chr4_1:24210971-24210990 None:intergenic 50.0%
GTAGCTGTCAACGCCATTAC+AGG - chr4_1:24211060-24211079 None:intergenic 50.0%
CTCACCTCAGATGATGCAGA+TGG + chr4_1:24211356-24211375 Msa0540980:CDS 50.0%
AAGGCCATCTGCATCATCTG+AGG - chr4_1:24211363-24211382 None:intergenic 50.0%
GATGGCCTTTCCATTAGCTC+TGG + chr4_1:24211374-24211393 Msa0540980:CDS 50.0%
CCCCATCATCACAGTCATCT+TGG - chr4_1:24211445-24211464 None:intergenic 50.0%
! CAAAGTGCGGATGACTTGGA+TGG + chr4_1:24211557-24211576 Msa0540980:CDS 50.0%
GCCTACACTCATCCAAACGT+AGG - chr4_1:24211690-24211709 None:intergenic 50.0%
GACAGCACCTCACACATTTG+GGG - chr4_1:24211786-24211805 None:intergenic 50.0%
! GGTGCTGTCATTATAGTCCC+TGG + chr4_1:24211797-24211816 Msa0540980:three_prime_UTR 50.0%
AACATTCGGTATCCAGCCCA+AGG + chr4_1:24212118-24212137 Msa0540980:three_prime_UTR 50.0%
!! AAAACCCATTTGGGTTGGCC+TGG - chr4_1:24212176-24212195 None:intergenic 50.0%
!! TTAGATGCAGTGACGGATCC+AGG - chr4_1:24212287-24212306 None:intergenic 50.0%
AACTCACATTGCTTGGGAGG+AGG - chr4_1:24212368-24212387 None:intergenic 50.0%
GTGCATGAGTGAGAGAGAGA+TGG - chr4_1:24210507-24210526 None:intergenic 50.0%
AGGGGAGAATCCAAGATCGA+CGG - chr4_1:24210673-24210692 None:intergenic 50.0%
! GGTGCTACAATGGGTGAAAG+GGG - chr4_1:24210691-24210710 None:intergenic 50.0%
! GGGTGCTACAATGGGTGAAA+GGG - chr4_1:24210692-24210711 None:intergenic 50.0%
! AGGGTGCTACAATGGGTGAA+AGG - chr4_1:24210693-24210712 None:intergenic 50.0%
CAAAGAGAGATTGTCGGCGA+GGG - chr4_1:24210712-24210731 None:intergenic 50.0%
TCTCGTCAGCGTTTCAACTC+AGG + chr4_1:24210737-24210756 Msa0540980:five_prime_UTR 50.0%
GCTCCTGTGTTAGTTAGTGC+AGG + chr4_1:24210879-24210898 Msa0540980:intron 50.0%
! GTCCTTTCCTGCGGCTATTT+TGG + chr4_1:24210961-24210980 Msa0540980:intron 50.0%
CACAGAACCAAAATAGCCGC+AGG - chr4_1:24210971-24210990 None:intergenic 50.0%
GTAGCTGTCAACGCCATTAC+AGG - chr4_1:24211060-24211079 None:intergenic 50.0%
CTCACCTCAGATGATGCAGA+TGG + chr4_1:24211356-24211375 Msa0540980:CDS 50.0%
AAGGCCATCTGCATCATCTG+AGG - chr4_1:24211363-24211382 None:intergenic 50.0%
GATGGCCTTTCCATTAGCTC+TGG + chr4_1:24211374-24211393 Msa0540980:CDS 50.0%
CCCCATCATCACAGTCATCT+TGG - chr4_1:24211445-24211464 None:intergenic 50.0%
! CAAAGTGCGGATGACTTGGA+TGG + chr4_1:24211557-24211576 Msa0540980:CDS 50.0%
GCCTACACTCATCCAAACGT+AGG - chr4_1:24211690-24211709 None:intergenic 50.0%
GACAGCACCTCACACATTTG+GGG - chr4_1:24211786-24211805 None:intergenic 50.0%
! GGTGCTGTCATTATAGTCCC+TGG + chr4_1:24211797-24211816 Msa0540980:three_prime_UTR 50.0%
AACATTCGGTATCCAGCCCA+AGG + chr4_1:24212118-24212137 Msa0540980:three_prime_UTR 50.0%
!! AAAACCCATTTGGGTTGGCC+TGG - chr4_1:24212176-24212195 None:intergenic 50.0%
!! TTAGATGCAGTGACGGATCC+AGG - chr4_1:24212287-24212306 None:intergenic 50.0%
AACTCACATTGCTTGGGAGG+AGG - chr4_1:24212368-24212387 None:intergenic 50.0%
! CACACAGGAAGGGTGTAGAG+TGG - chr4_1:24210375-24210394 None:intergenic 55.0%
CACTCTACACCCTTCCTGTG+TGG + chr4_1:24210373-24210392 Msa0540980:five_prime_UTR 55.0%
TGGGTCGAGTGAGAGAGAGA+TGG - chr4_1:24210487-24210506 None:intergenic 55.0%
! GGGTGCTACGATGTGTTGAC+TGG - chr4_1:24210644-24210663 None:intergenic 55.0%
GGAGAATCCAAGATCGACGG+CGG - chr4_1:24210670-24210689 None:intergenic 55.0%
GCAAAGAGAGATTGTCGGCG+AGG - chr4_1:24210713-24210732 None:intergenic 55.0%
ATCCAAACGTAGGTCCGTCC+CGG - chr4_1:24211680-24211699 None:intergenic 55.0%
!! CCTCGGGTTAGTCAGTCCTT+GGG - chr4_1:24212137-24212156 None:intergenic 55.0%
!! ACCTCGGGTTAGTCAGTCCT+TGG - chr4_1:24212138-24212157 None:intergenic 55.0%
ACCACCAGGCCAACCCAAAT+GGG + chr4_1:24212169-24212188 Msa0540980:three_prime_UTR 55.0%
! CACACAGGAAGGGTGTAGAG+TGG - chr4_1:24210375-24210394 None:intergenic 55.0%
CACTCTACACCCTTCCTGTG+TGG + chr4_1:24210373-24210392 Msa0540980:five_prime_UTR 55.0%
TGGGTCGAGTGAGAGAGAGA+TGG - chr4_1:24210487-24210506 None:intergenic 55.0%
! GGGTGCTACGATGTGTTGAC+TGG - chr4_1:24210644-24210663 None:intergenic 55.0%
GGAGAATCCAAGATCGACGG+CGG - chr4_1:24210670-24210689 None:intergenic 55.0%
GCAAAGAGAGATTGTCGGCG+AGG - chr4_1:24210713-24210732 None:intergenic 55.0%
ATCCAAACGTAGGTCCGTCC+CGG - chr4_1:24211680-24211699 None:intergenic 55.0%
!! CCTCGGGTTAGTCAGTCCTT+GGG - chr4_1:24212137-24212156 None:intergenic 55.0%
!! ACCTCGGGTTAGTCAGTCCT+TGG - chr4_1:24212138-24212157 None:intergenic 55.0%
ACCACCAGGCCAACCCAAAT+GGG + chr4_1:24212169-24212188 Msa0540980:three_prime_UTR 55.0%
!! GTCGGCGAGGGTGCTACAAT+GGG - chr4_1:24210700-24210719 None:intergenic 60.0%
!! TGTCGGCGAGGGTGCTACAA+TGG - chr4_1:24210701-24210720 None:intergenic 60.0%
!! GGGTTAGTCAGTCCTTGGGC+TGG - chr4_1:24212133-24212152 None:intergenic 60.0%
CCCAAGGACTGACTAACCCG+AGG + chr4_1:24212134-24212153 Msa0540980:three_prime_UTR 60.0%
!! TGGTGTTGGCTTGGGACCTC+GGG - chr4_1:24212153-24212172 None:intergenic 60.0%
!! GTGGTGTTGGCTTGGGACCT+CGG - chr4_1:24212154-24212173 None:intergenic 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG - chr4_1:24212161-24212180 None:intergenic 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG - chr4_1:24212162-24212181 None:intergenic 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG - chr4_1:24212167-24212186 None:intergenic 60.0%
CACCACCAGGCCAACCCAAA+TGG + chr4_1:24212168-24212187 Msa0540980:three_prime_UTR 60.0%
!! ACCCATTTGGGTTGGCCTGG+TGG - chr4_1:24212173-24212192 None:intergenic 60.0%
!! GTCGGCGAGGGTGCTACAAT+GGG - chr4_1:24210700-24210719 None:intergenic 60.0%
!! TGTCGGCGAGGGTGCTACAA+TGG - chr4_1:24210701-24210720 None:intergenic 60.0%
!! GGGTTAGTCAGTCCTTGGGC+TGG - chr4_1:24212133-24212152 None:intergenic 60.0%
CCCAAGGACTGACTAACCCG+AGG + chr4_1:24212134-24212153 Msa0540980:three_prime_UTR 60.0%
!! TGGTGTTGGCTTGGGACCTC+GGG - chr4_1:24212153-24212172 None:intergenic 60.0%
!! GTGGTGTTGGCTTGGGACCT+CGG - chr4_1:24212154-24212173 None:intergenic 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG - chr4_1:24212161-24212180 None:intergenic 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG - chr4_1:24212162-24212181 None:intergenic 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG - chr4_1:24212167-24212186 None:intergenic 60.0%
CACCACCAGGCCAACCCAAA+TGG + chr4_1:24212168-24212187 Msa0540980:three_prime_UTR 60.0%
!! ACCCATTTGGGTTGGCCTGG+TGG - chr4_1:24212173-24212192 None:intergenic 60.0%
TCCAAGATCGACGGCGGCGA+GGG - chr4_1:24210664-24210683 None:intergenic 65.0%
ATCCAAGATCGACGGCGGCG+AGG - chr4_1:24210665-24210684 None:intergenic 65.0%
AGCCGGGACGGACCTACGTT+TGG + chr4_1:24211675-24211694 Msa0540980:three_prime_UTR 65.0%
GGTCCCAAGCCAACACCACC+AGG + chr4_1:24212155-24212174 Msa0540980:three_prime_UTR 65.0%
TCCAAGATCGACGGCGGCGA+GGG - chr4_1:24210664-24210683 None:intergenic 65.0%
ATCCAAGATCGACGGCGGCG+AGG - chr4_1:24210665-24210684 None:intergenic 65.0%
AGCCGGGACGGACCTACGTT+TGG + chr4_1:24211675-24211694 Msa0540980:three_prime_UTR 65.0%
GGTCCCAAGCCAACACCACC+AGG + chr4_1:24212155-24212174 Msa0540980:three_prime_UTR 65.0%
ACCCTCGCCGCCGTCGATCT+TGG + chr4_1:24210660-24210679 Msa0540980:five_prime_UTR 70.0%
ACCCTCGCCGCCGTCGATCT+TGG + chr4_1:24210660-24210679 Msa0540980:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 24210367 24212793 24210367 ID=Msa0540980;Name=Msa0540980
chr4_1 mRNA 24210367 24212793 24210367 ID=Msa0540980-mRNA-1;Parent=Msa0540980;Name=Msa0540980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=460|1|1|1|0.5|0.33|3|1156|161
chr4_1 exon 24210367 24210758 24210367 ID=Msa0540980-mRNA-1:exon:6631;Parent=Msa0540980-mRNA-1
chr4_1 exon 24210995 24211182 24210995 ID=Msa0540980-mRNA-1:exon:6632;Parent=Msa0540980-mRNA-1
chr4_1 exon 24211272 24212793 24211272 ID=Msa0540980-mRNA-1:exon:6633;Parent=Msa0540980-mRNA-1
chr4_1 five_prime_UTR 24210367 24210758 24210367 ID=Msa0540980-mRNA-1:five_prime_utr;Parent=Msa0540980-mRNA-1
chr4_1 five_prime_UTR 24210995 24211062 24210995 ID=Msa0540980-mRNA-1:five_prime_utr;Parent=Msa0540980-mRNA-1
chr4_1 CDS 24211063 24211182 24211063 ID=Msa0540980-mRNA-1:cds;Parent=Msa0540980-mRNA-1
chr4_1 CDS 24211272 24211637 24211272 ID=Msa0540980-mRNA-1:cds;Parent=Msa0540980-mRNA-1
chr4_1 three_prime_UTR 24211638 24212793 24211638 ID=Msa0540980-mRNA-1:three_prime_utr;Parent=Msa0540980-mRNA-1
Gene Sequence

>Msa0540980

ATGGCGTTGACAGCTACAGCTACAAAGAGAGTCCGAGAAGACATTATAAAATCACTGCTTTTGTCAAAAGATACAAGTCTTGTTCTCACATCATTTTTTGGACCTAATTTATGCTTCATGGTAAATCATAGTAGAACATCATGGGCTTCTTATGAGAAAGATTTTCAAGAATTGATTAAAGTATATGGTGGGAATAAAAAAGCTCTCACCTCAGATGATGCAGATGGCCTTTCCATTAGCTCTGGTGCTTCTGATACAGACAGTGTTTCTTCTTATGATGTGGACGGCAACCAAGATGACTGTGATGATGGGGATATAAATGTAATGCACTCAGGAAACACCGGCAATCATAAAAAAAGAAGAAAATTGACAATTGAGTTCCTGGAAAATGATGTTGATGTCTTTCAAAGTGCGGATGACTTGGATGGTACTGATCTTTCTGCTATCTCTCAGTTCAGTACAAATAATTGGTCATGTTTAGTTTAG
Protein sequence

>Msa0540980

MALTATATKRVREDIIKSLLLSKDTSLVLTSFFGPNLCFMVNHSRTSWASYEKDFQELIKVYGGNKKALTSDDADGLSISSGASDTDSVSSYDVDGNQDDCDDGDINVMHSGNTGNHKKRRKLTIEFLENDVDVFQSADDLDGTDLSAISQFSTNNWSCLV*