AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0544660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544660 MtrunA17_Chr4g0042771 94.972 358 3 1 1 358 1 343 0.0 686
Msa0544660 MtrunA17_Chr4g0061091 28.082 292 198 9 49 331 6 294 5.80e-29 114
Msa0544660 MtrunA17_Chr3g0091531 27.703 296 186 8 49 330 6 287 5.03e-26 106
Msa0544660 MtrunA17_Chr4g0052301 26.073 303 197 7 41 336 7 289 1.55e-17 82.4
Msa0544660 MtrunA17_Chr7g0221731 26.316 304 199 7 39 336 5 289 6.40e-17 80.5
Msa0544660 MtrunA17_Chr3g0125731 24.756 307 211 6 39 336 5 300 1.67e-15 76.6
Msa0544660 MtrunA17_Chr1g0159471 23.127 307 225 6 35 336 1 301 7.88e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544660 AT1G26650.1 64.242 330 115 3 24 350 2 331 2.57e-154 437
Msa0544660 AT1G69430.1 66.462 325 102 2 17 335 8 331 4.97e-154 437
Msa0544660 AT4G19950.1 27.451 306 190 9 41 336 7 290 9.23e-15 74.7
Msa0544660 AT5G61340.2 25.150 334 213 12 6 329 12 318 1.03e-12 68.9
Msa0544660 AT5G61340.1 28.311 219 136 8 119 329 80 285 1.56e-12 68.2

Find 67 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGTTCTGGAGGATGTTTC+GGG 0.171105 4_1:+33546005 Msa0544660:CDS
CTCGGTTCTGGAGGATGTTT+CGG 0.203669 4_1:+33546004 Msa0544660:CDS
GAGAAACTATAAGAATTCTT+AGG 0.248875 4_1:+33545436 Msa0544660:CDS
TGTAGTGCATTGGCTGTTCT+TGG 0.255096 4_1:+33545879 Msa0544660:CDS
TTGTGAAGAATCTTACTATT+AGG 0.290531 4_1:+33545550 Msa0544660:CDS
GAGGTTGTTCTCCTAGGATT+AGG 0.293873 4_1:+33545298 Msa0544660:CDS
TGCGTTGGTGATCTCGGTTC+TGG 0.297916 4_1:+33545992 Msa0544660:CDS
TATTCGAGAAAGAAGTTTGA+TGG 0.334246 4_1:+33545738 Msa0544660:CDS
TTTACGTCAAGCTTTAGAAT+TGG 0.356836 4_1:+33545359 Msa0544660:CDS
GCCCATTGTTTCAGCAGAAA+TGG 0.362209 4_1:-33546327 None:intergenic
AATTCAATCAATGAATGCTT+TGG 0.379030 4_1:+33545404 Msa0544660:CDS
CACTCATCATAGAATCTATA+AGG 0.391918 4_1:-33546226 None:intergenic
ATATATCTTGGATCAACAAT+AGG 0.400163 4_1:+33546089 Msa0544660:CDS
TGTTGTGTATGCTGCATTGA+TGG 0.401523 4_1:+33545917 Msa0544660:CDS
AGGTTGTTCTCCTAGGATTA+GGG 0.404867 4_1:+33545299 Msa0544660:CDS
GTGTTATTGTGGCTAAGTTT+TGG 0.408921 4_1:+33545772 Msa0544660:CDS
CAGCGTTGCGTTGGTGATCT+CGG 0.412590 4_1:+33545986 Msa0544660:CDS
GTCGGTCTGCTAATATATCT+TGG 0.415716 4_1:+33546077 Msa0544660:CDS
GCAGCATACACAACAACATT+AGG 0.417117 4_1:-33545909 None:intergenic
GGTGATAATGTATTCGTTTG+TGG 0.423493 4_1:+33546202 Msa0544660:CDS
GGCCATTTCTGCTGAAACAA+TGG 0.429412 4_1:+33546325 Msa0544660:CDS
AACAATAGGAATGGCCTTTG+TGG 0.433278 4_1:+33546103 Msa0544660:CDS
GACAAAAGCACAGCAGAAAC+AGG 0.438148 4_1:-33545504 None:intergenic
TGCGGATACGGTGATTGCTT+CGG 0.443552 4_1:+33545641 Msa0544660:CDS
TGGGCTTGTACAGTTATTGT+TGG 0.445242 4_1:+33545819 Msa0544660:CDS
ATTGTTGTTATTGTCGAAAA+CGG 0.446504 4_1:+33545689 Msa0544660:CDS
CAAGTGGAGGTTGTTCTCCT+AGG 0.449328 4_1:+33545292 Msa0544660:CDS
GTAGTGCATTGGCTGTTCTT+GGG 0.473904 4_1:+33545880 Msa0544660:CDS
GCCATTTCTGCTGAAACAAT+GGG 0.478130 4_1:+33546326 Msa0544660:CDS
AGATACTTGCGACGTATATG+TGG 0.480298 4_1:+33545799 Msa0544660:CDS
TTGTCAGAGATTTGCGGATA+CGG 0.482242 4_1:+33545629 Msa0544660:CDS
TGACAAGATTGCTTAATCAT+AGG 0.488189 4_1:-33545612 None:intergenic
GAATTCTTAGGTTTAATGCA+TGG 0.489371 4_1:+33545448 Msa0544660:CDS
AATCATTTGCAGCGTTGCGT+TGG 0.493610 4_1:+33545977 Msa0544660:CDS
AATTCTTAGGTTTAATGCAT+GGG 0.494246 4_1:+33545449 Msa0544660:CDS
TTTAGCATGGAGAACTCAAA+TGG 0.496862 4_1:+33546275 Msa0544660:CDS
TCTTACTATTAGGCTTATGT+TGG 0.501948 4_1:+33545560 Msa0544660:CDS
TTTAATTAAGGGTCAGACTC+AGG 0.510283 4_1:+33546055 Msa0544660:CDS
GCAATCTTGTCAGAGATTTG+CGG 0.510716 4_1:+33545623 Msa0544660:CDS
ATATGATCTACCCTAATCCT+AGG 0.527505 4_1:-33545309 None:intergenic
AATGTGGGAAGGGCCGCTCT+TGG 0.532814 4_1:+33546181 Msa0544660:CDS
ATAGGAATGGCCTTTGTGGA+GGG 0.546492 4_1:+33546107 Msa0544660:CDS
AGAGTAAAGACGCTGAGTTA+TGG 0.546663 4_1:+33546143 Msa0544660:CDS
TGCTTAATCATAGGTCTCAA+AGG 0.555452 4_1:-33545603 None:intergenic
GTTATTGTCGAAAACGGCTG+TGG 0.558964 4_1:+33545695 Msa0544660:CDS
GTGTATGCTGCATTGATGGT+CGG 0.566529 4_1:+33545921 Msa0544660:CDS
GTGATGGATCTTCGAGAATG+TGG 0.574992 4_1:+33546165 Msa0544660:CDS
AATAGGAATGGCCTTTGTGG+AGG 0.586579 4_1:+33546106 Msa0544660:CDS
TCTTGGATCAACAATAGGAA+TGG 0.587680 4_1:+33546094 Msa0544660:CDS
ATGGAGAACTCAAATGGTGA+TGG 0.588919 4_1:+33546281 Msa0544660:CDS
TAGGAATGGCCTTTGTGGAG+GGG 0.600285 4_1:+33546108 Msa0544660:CDS
CGGTTCTGGAGGATGTTTCG+GGG 0.610462 4_1:+33546006 Msa0544660:CDS
TATAGATTCTATGATGAGTG+CGG 0.611418 4_1:+33546229 Msa0544660:CDS
AAAATGGAGATTTCAAGTGG+AGG 0.612604 4_1:+33545279 None:intergenic
ATTAAGGGTCAGACTCAGGT+CGG 0.614434 4_1:+33546059 Msa0544660:CDS
ATGTTGGTTGCTGAAACTAG+TGG 0.620640 4_1:+33545576 Msa0544660:CDS
AAGACGCTGAGTTATGGTGA+TGG 0.624531 4_1:+33546149 Msa0544660:CDS
ATGCACTACAAAACGCAACA+AGG 0.631744 4_1:-33545866 None:intergenic
GATACTTGCGACGTATATGT+GGG 0.634555 4_1:+33545800 Msa0544660:CDS
AACAACAATGTAGCATACAA+AGG 0.636060 4_1:-33545675 None:intergenic
GTTGGTGATCTCGGTTCTGG+AGG 0.638193 4_1:+33545995 Msa0544660:CDS
GATCTTCGAGAATGTGGGAA+GGG 0.641099 4_1:+33546171 Msa0544660:CDS
GGATCTTCGAGAATGTGGGA+AGG 0.642671 4_1:+33546170 Msa0544660:CDS
CTCAAACAACCCCTCCACAA+AGG 0.646189 4_1:-33546117 None:intergenic
GAATACATTATCACCAAGAG+CGG 0.678841 4_1:-33546194 None:intergenic
GGTTCTGGAGGATGTTTCGG+GGG 0.680880 4_1:+33546007 Msa0544660:CDS
TGATGGATCTTCGAGAATGT+GGG 0.681312 4_1:+33546166 Msa0544660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACTCAATTTTAGAAACTA+TGG + chr4_1:33546304-33546323 Msa0544660:CDS 20.0%
!!! AAACTCAATTTTAGAAACTA+TGG + chr4_1:33546304-33546323 Msa0544660:CDS 20.0%
! GTAGATCATATGAAAAAAGA+GGG + chr4_1:33545321-33545340 Msa0544660:CDS 25.0%
! AATTCAATCAATGAATGCTT+TGG + chr4_1:33545404-33545423 Msa0544660:CDS 25.0%
! GAGAAACTATAAGAATTCTT+AGG + chr4_1:33545436-33545455 Msa0544660:CDS 25.0%
! AATTCTTAGGTTTAATGCAT+GGG + chr4_1:33545449-33545468 Msa0544660:CDS 25.0%
! TTGTGAAGAATCTTACTATT+AGG + chr4_1:33545550-33545569 Msa0544660:CDS 25.0%
!! ATTGTTGTTATTGTCGAAAA+CGG + chr4_1:33545689-33545708 Msa0544660:CDS 25.0%
!!! AAGGTCGAGTATTTTAATTA+AGG + chr4_1:33546043-33546062 Msa0544660:CDS 25.0%
!!! AGGTCGAGTATTTTAATTAA+GGG + chr4_1:33546044-33546063 Msa0544660:CDS 25.0%
! ATATATCTTGGATCAACAAT+AGG + chr4_1:33546089-33546108 Msa0544660:CDS 25.0%
! GTAGATCATATGAAAAAAGA+GGG + chr4_1:33545321-33545340 Msa0544660:CDS 25.0%
! AATTCAATCAATGAATGCTT+TGG + chr4_1:33545404-33545423 Msa0544660:CDS 25.0%
! GAGAAACTATAAGAATTCTT+AGG + chr4_1:33545436-33545455 Msa0544660:CDS 25.0%
! AATTCTTAGGTTTAATGCAT+GGG + chr4_1:33545449-33545468 Msa0544660:CDS 25.0%
! TTGTGAAGAATCTTACTATT+AGG + chr4_1:33545550-33545569 Msa0544660:CDS 25.0%
!! ATTGTTGTTATTGTCGAAAA+CGG + chr4_1:33545689-33545708 Msa0544660:CDS 25.0%
!!! AAGGTCGAGTATTTTAATTA+AGG + chr4_1:33546043-33546062 Msa0544660:CDS 25.0%
!!! AGGTCGAGTATTTTAATTAA+GGG + chr4_1:33546044-33546063 Msa0544660:CDS 25.0%
! ATATATCTTGGATCAACAAT+AGG + chr4_1:33546089-33546108 Msa0544660:CDS 25.0%
GGTAGATCATATGAAAAAAG+AGG + chr4_1:33545320-33545339 Msa0544660:CDS 30.0%
!! TTTACGTCAAGCTTTAGAAT+TGG + chr4_1:33545359-33545378 Msa0544660:CDS 30.0%
GAATTCTTAGGTTTAATGCA+TGG + chr4_1:33545448-33545467 Msa0544660:CDS 30.0%
! TGTGCTTTTGTCTAATGTAT+TGG + chr4_1:33545515-33545534 Msa0544660:CDS 30.0%
TCTTACTATTAGGCTTATGT+TGG + chr4_1:33545560-33545579 Msa0544660:CDS 30.0%
TGACAAGATTGCTTAATCAT+AGG - chr4_1:33545615-33545634 None:intergenic 30.0%
AACAACAATGTAGCATACAA+AGG - chr4_1:33545678-33545697 None:intergenic 30.0%
TATTCGAGAAAGAAGTTTGA+TGG + chr4_1:33545738-33545757 Msa0544660:CDS 30.0%
!! TTCGAAGTTTTGTGTTATTG+TGG + chr4_1:33545761-33545780 Msa0544660:CDS 30.0%
CACTCATCATAGAATCTATA+AGG - chr4_1:33546229-33546248 None:intergenic 30.0%
TATAGATTCTATGATGAGTG+CGG + chr4_1:33546229-33546248 Msa0544660:CDS 30.0%
GGTAGATCATATGAAAAAAG+AGG + chr4_1:33545320-33545339 Msa0544660:CDS 30.0%
!! TTTACGTCAAGCTTTAGAAT+TGG + chr4_1:33545359-33545378 Msa0544660:CDS 30.0%
GAATTCTTAGGTTTAATGCA+TGG + chr4_1:33545448-33545467 Msa0544660:CDS 30.0%
! TGTGCTTTTGTCTAATGTAT+TGG + chr4_1:33545515-33545534 Msa0544660:CDS 30.0%
TCTTACTATTAGGCTTATGT+TGG + chr4_1:33545560-33545579 Msa0544660:CDS 30.0%
TGACAAGATTGCTTAATCAT+AGG - chr4_1:33545615-33545634 None:intergenic 30.0%
AACAACAATGTAGCATACAA+AGG - chr4_1:33545678-33545697 None:intergenic 30.0%
TATTCGAGAAAGAAGTTTGA+TGG + chr4_1:33545738-33545757 Msa0544660:CDS 30.0%
!! TTCGAAGTTTTGTGTTATTG+TGG + chr4_1:33545761-33545780 Msa0544660:CDS 30.0%
CACTCATCATAGAATCTATA+AGG - chr4_1:33546229-33546248 None:intergenic 30.0%
TATAGATTCTATGATGAGTG+CGG + chr4_1:33546229-33546248 Msa0544660:CDS 30.0%
ATATGATCTACCCTAATCCT+AGG - chr4_1:33545312-33545331 None:intergenic 35.0%
TGCTTAATCATAGGTCTCAA+AGG - chr4_1:33545606-33545625 None:intergenic 35.0%
!! GTGTTATTGTGGCTAAGTTT+TGG + chr4_1:33545772-33545791 Msa0544660:CDS 35.0%
!! TTATTGTGGCTAAGTTTTGG+AGG + chr4_1:33545775-33545794 Msa0544660:CDS 35.0%
TTTAATTAAGGGTCAGACTC+AGG + chr4_1:33546055-33546074 Msa0544660:CDS 35.0%
TCTTGGATCAACAATAGGAA+TGG + chr4_1:33546094-33546113 Msa0544660:CDS 35.0%
GAATACATTATCACCAAGAG+CGG - chr4_1:33546197-33546216 None:intergenic 35.0%
! GGTGATAATGTATTCGTTTG+TGG + chr4_1:33546202-33546221 Msa0544660:CDS 35.0%
! CAGTTGTAGATCTTTTAGCA+TGG + chr4_1:33546262-33546281 Msa0544660:CDS 35.0%
TTTAGCATGGAGAACTCAAA+TGG + chr4_1:33546275-33546294 Msa0544660:CDS 35.0%
ATATGATCTACCCTAATCCT+AGG - chr4_1:33545312-33545331 None:intergenic 35.0%
TGCTTAATCATAGGTCTCAA+AGG - chr4_1:33545606-33545625 None:intergenic 35.0%
!! GTGTTATTGTGGCTAAGTTT+TGG + chr4_1:33545772-33545791 Msa0544660:CDS 35.0%
!! TTATTGTGGCTAAGTTTTGG+AGG + chr4_1:33545775-33545794 Msa0544660:CDS 35.0%
TTTAATTAAGGGTCAGACTC+AGG + chr4_1:33546055-33546074 Msa0544660:CDS 35.0%
TCTTGGATCAACAATAGGAA+TGG + chr4_1:33546094-33546113 Msa0544660:CDS 35.0%
GAATACATTATCACCAAGAG+CGG - chr4_1:33546197-33546216 None:intergenic 35.0%
! GGTGATAATGTATTCGTTTG+TGG + chr4_1:33546202-33546221 Msa0544660:CDS 35.0%
! CAGTTGTAGATCTTTTAGCA+TGG + chr4_1:33546262-33546281 Msa0544660:CDS 35.0%
TTTAGCATGGAGAACTCAAA+TGG + chr4_1:33546275-33546294 Msa0544660:CDS 35.0%
AGGTTGTTCTCCTAGGATTA+GGG + chr4_1:33545299-33545318 Msa0544660:CDS 40.0%
! ATGTTGGTTGCTGAAACTAG+TGG + chr4_1:33545576-33545595 Msa0544660:CDS 40.0%
GCAATCTTGTCAGAGATTTG+CGG + chr4_1:33545623-33545642 Msa0544660:CDS 40.0%
TTGTCAGAGATTTGCGGATA+CGG + chr4_1:33545629-33545648 Msa0544660:CDS 40.0%
AGATACTTGCGACGTATATG+TGG + chr4_1:33545799-33545818 Msa0544660:CDS 40.0%
GATACTTGCGACGTATATGT+GGG + chr4_1:33545800-33545819 Msa0544660:CDS 40.0%
TGGGCTTGTACAGTTATTGT+TGG + chr4_1:33545819-33545838 Msa0544660:CDS 40.0%
ATGCACTACAAAACGCAACA+AGG - chr4_1:33545869-33545888 None:intergenic 40.0%
! TGTTGCGTTTTGTAGTGCAT+TGG + chr4_1:33545869-33545888 Msa0544660:CDS 40.0%
GCAGCATACACAACAACATT+AGG - chr4_1:33545912-33545931 None:intergenic 40.0%
TGTTGTGTATGCTGCATTGA+TGG + chr4_1:33545917-33545936 Msa0544660:CDS 40.0%
GTCGGTCTGCTAATATATCT+TGG + chr4_1:33546077-33546096 Msa0544660:CDS 40.0%
AACAATAGGAATGGCCTTTG+TGG + chr4_1:33546103-33546122 Msa0544660:CDS 40.0%
AGAGTAAAGACGCTGAGTTA+TGG + chr4_1:33546143-33546162 Msa0544660:CDS 40.0%
! TGATGGATCTTCGAGAATGT+GGG + chr4_1:33546166-33546185 Msa0544660:CDS 40.0%
ATGGAGAACTCAAATGGTGA+TGG + chr4_1:33546281-33546300 Msa0544660:CDS 40.0%
GCCATTTCTGCTGAAACAAT+GGG + chr4_1:33546326-33546345 Msa0544660:CDS 40.0%
AGGTTGTTCTCCTAGGATTA+GGG + chr4_1:33545299-33545318 Msa0544660:CDS 40.0%
! ATGTTGGTTGCTGAAACTAG+TGG + chr4_1:33545576-33545595 Msa0544660:CDS 40.0%
GCAATCTTGTCAGAGATTTG+CGG + chr4_1:33545623-33545642 Msa0544660:CDS 40.0%
TTGTCAGAGATTTGCGGATA+CGG + chr4_1:33545629-33545648 Msa0544660:CDS 40.0%
AGATACTTGCGACGTATATG+TGG + chr4_1:33545799-33545818 Msa0544660:CDS 40.0%
GATACTTGCGACGTATATGT+GGG + chr4_1:33545800-33545819 Msa0544660:CDS 40.0%
TGGGCTTGTACAGTTATTGT+TGG + chr4_1:33545819-33545838 Msa0544660:CDS 40.0%
ATGCACTACAAAACGCAACA+AGG - chr4_1:33545869-33545888 None:intergenic 40.0%
! TGTTGCGTTTTGTAGTGCAT+TGG + chr4_1:33545869-33545888 Msa0544660:CDS 40.0%
GCAGCATACACAACAACATT+AGG - chr4_1:33545912-33545931 None:intergenic 40.0%
TGTTGTGTATGCTGCATTGA+TGG + chr4_1:33545917-33545936 Msa0544660:CDS 40.0%
GTCGGTCTGCTAATATATCT+TGG + chr4_1:33546077-33546096 Msa0544660:CDS 40.0%
AACAATAGGAATGGCCTTTG+TGG + chr4_1:33546103-33546122 Msa0544660:CDS 40.0%
AGAGTAAAGACGCTGAGTTA+TGG + chr4_1:33546143-33546162 Msa0544660:CDS 40.0%
! TGATGGATCTTCGAGAATGT+GGG + chr4_1:33546166-33546185 Msa0544660:CDS 40.0%
ATGGAGAACTCAAATGGTGA+TGG + chr4_1:33546281-33546300 Msa0544660:CDS 40.0%
GCCATTTCTGCTGAAACAAT+GGG + chr4_1:33546326-33546345 Msa0544660:CDS 40.0%
GAGGTTGTTCTCCTAGGATT+AGG + chr4_1:33545298-33545317 Msa0544660:CDS 45.0%
! GACAAAAGCACAGCAGAAAC+AGG - chr4_1:33545507-33545526 None:intergenic 45.0%
GTTATTGTCGAAAACGGCTG+TGG + chr4_1:33545695-33545714 Msa0544660:CDS 45.0%
!! TGTAGTGCATTGGCTGTTCT+TGG + chr4_1:33545879-33545898 Msa0544660:CDS 45.0%
!! GTAGTGCATTGGCTGTTCTT+GGG + chr4_1:33545880-33545899 Msa0544660:CDS 45.0%
! GTGTATGCTGCATTGATGGT+CGG + chr4_1:33545921-33545940 Msa0544660:CDS 45.0%
AATCATTTGCAGCGTTGCGT+TGG + chr4_1:33545977-33545996 Msa0544660:CDS 45.0%
ATTAAGGGTCAGACTCAGGT+CGG + chr4_1:33546059-33546078 Msa0544660:CDS 45.0%
AATAGGAATGGCCTTTGTGG+AGG + chr4_1:33546106-33546125 Msa0544660:CDS 45.0%
ATAGGAATGGCCTTTGTGGA+GGG + chr4_1:33546107-33546126 Msa0544660:CDS 45.0%
AAGACGCTGAGTTATGGTGA+TGG + chr4_1:33546149-33546168 Msa0544660:CDS 45.0%
!! GTGATGGATCTTCGAGAATG+TGG + chr4_1:33546165-33546184 Msa0544660:CDS 45.0%
GATCTTCGAGAATGTGGGAA+GGG + chr4_1:33546171-33546190 Msa0544660:CDS 45.0%
GGCCATTTCTGCTGAAACAA+TGG + chr4_1:33546325-33546344 Msa0544660:CDS 45.0%
GCCCATTGTTTCAGCAGAAA+TGG - chr4_1:33546330-33546349 None:intergenic 45.0%
GAGGTTGTTCTCCTAGGATT+AGG + chr4_1:33545298-33545317 Msa0544660:CDS 45.0%
! GACAAAAGCACAGCAGAAAC+AGG - chr4_1:33545507-33545526 None:intergenic 45.0%
GTTATTGTCGAAAACGGCTG+TGG + chr4_1:33545695-33545714 Msa0544660:CDS 45.0%
!! TGTAGTGCATTGGCTGTTCT+TGG + chr4_1:33545879-33545898 Msa0544660:CDS 45.0%
!! GTAGTGCATTGGCTGTTCTT+GGG + chr4_1:33545880-33545899 Msa0544660:CDS 45.0%
! GTGTATGCTGCATTGATGGT+CGG + chr4_1:33545921-33545940 Msa0544660:CDS 45.0%
AATCATTTGCAGCGTTGCGT+TGG + chr4_1:33545977-33545996 Msa0544660:CDS 45.0%
ATTAAGGGTCAGACTCAGGT+CGG + chr4_1:33546059-33546078 Msa0544660:CDS 45.0%
AATAGGAATGGCCTTTGTGG+AGG + chr4_1:33546106-33546125 Msa0544660:CDS 45.0%
ATAGGAATGGCCTTTGTGGA+GGG + chr4_1:33546107-33546126 Msa0544660:CDS 45.0%
AAGACGCTGAGTTATGGTGA+TGG + chr4_1:33546149-33546168 Msa0544660:CDS 45.0%
!! GTGATGGATCTTCGAGAATG+TGG + chr4_1:33546165-33546184 Msa0544660:CDS 45.0%
GATCTTCGAGAATGTGGGAA+GGG + chr4_1:33546171-33546190 Msa0544660:CDS 45.0%
GGCCATTTCTGCTGAAACAA+TGG + chr4_1:33546325-33546344 Msa0544660:CDS 45.0%
GCCCATTGTTTCAGCAGAAA+TGG - chr4_1:33546330-33546349 None:intergenic 45.0%
CAAGTGGAGGTTGTTCTCCT+AGG + chr4_1:33545292-33545311 Msa0544660:CDS 50.0%
TGCGGATACGGTGATTGCTT+CGG + chr4_1:33545641-33545660 Msa0544660:CDS 50.0%
!! CTCGGTTCTGGAGGATGTTT+CGG + chr4_1:33546004-33546023 Msa0544660:CDS 50.0%
!! TCGGTTCTGGAGGATGTTTC+GGG + chr4_1:33546005-33546024 Msa0544660:CDS 50.0%
TAGGAATGGCCTTTGTGGAG+GGG + chr4_1:33546108-33546127 Msa0544660:CDS 50.0%
CTCAAACAACCCCTCCACAA+AGG - chr4_1:33546120-33546139 None:intergenic 50.0%
GGATCTTCGAGAATGTGGGA+AGG + chr4_1:33546170-33546189 Msa0544660:CDS 50.0%
CAAGTGGAGGTTGTTCTCCT+AGG + chr4_1:33545292-33545311 Msa0544660:CDS 50.0%
TGCGGATACGGTGATTGCTT+CGG + chr4_1:33545641-33545660 Msa0544660:CDS 50.0%
!! CTCGGTTCTGGAGGATGTTT+CGG + chr4_1:33546004-33546023 Msa0544660:CDS 50.0%
!! TCGGTTCTGGAGGATGTTTC+GGG + chr4_1:33546005-33546024 Msa0544660:CDS 50.0%
TAGGAATGGCCTTTGTGGAG+GGG + chr4_1:33546108-33546127 Msa0544660:CDS 50.0%
CTCAAACAACCCCTCCACAA+AGG - chr4_1:33546120-33546139 None:intergenic 50.0%
GGATCTTCGAGAATGTGGGA+AGG + chr4_1:33546170-33546189 Msa0544660:CDS 50.0%
!! CAGCGTTGCGTTGGTGATCT+CGG + chr4_1:33545986-33546005 Msa0544660:CDS 55.0%
!! TGCGTTGGTGATCTCGGTTC+TGG + chr4_1:33545992-33546011 Msa0544660:CDS 55.0%
!! GTTGGTGATCTCGGTTCTGG+AGG + chr4_1:33545995-33546014 Msa0544660:CDS 55.0%
!! CGGTTCTGGAGGATGTTTCG+GGG + chr4_1:33546006-33546025 Msa0544660:CDS 55.0%
!! GGTTCTGGAGGATGTTTCGG+GGG + chr4_1:33546007-33546026 Msa0544660:CDS 55.0%
!! CAGCGTTGCGTTGGTGATCT+CGG + chr4_1:33545986-33546005 Msa0544660:CDS 55.0%
!! TGCGTTGGTGATCTCGGTTC+TGG + chr4_1:33545992-33546011 Msa0544660:CDS 55.0%
!! GTTGGTGATCTCGGTTCTGG+AGG + chr4_1:33545995-33546014 Msa0544660:CDS 55.0%
!! CGGTTCTGGAGGATGTTTCG+GGG + chr4_1:33546006-33546025 Msa0544660:CDS 55.0%
!! GGTTCTGGAGGATGTTTCGG+GGG + chr4_1:33546007-33546026 Msa0544660:CDS 55.0%
AATGTGGGAAGGGCCGCTCT+TGG + chr4_1:33546181-33546200 Msa0544660:CDS 60.0%
AATGTGGGAAGGGCCGCTCT+TGG + chr4_1:33546181-33546200 Msa0544660:CDS 60.0%
! GGAGGATGTTTCGGGGGCGC+AGG + chr4_1:33546013-33546032 Msa0544660:CDS 70.0%
! CGGGGGCGCAGGCAATGCTA+AGG + chr4_1:33546024-33546043 Msa0544660:CDS 70.0%
! GGAGGATGTTTCGGGGGCGC+AGG + chr4_1:33546013-33546032 Msa0544660:CDS 70.0%
! CGGGGGCGCAGGCAATGCTA+AGG + chr4_1:33546024-33546043 Msa0544660:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 33545282 33546358 33545282 ID=Msa0544660;Name=Msa0544660
chr4_1 mRNA 33545282 33546358 33545282 ID=Msa0544660-mRNA-1;Parent=Msa0544660;Name=Msa0544660-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|1|1|0|358
chr4_1 exon 33545282 33546358 33545282 ID=Msa0544660-mRNA-1:exon:8561;Parent=Msa0544660-mRNA-1
chr4_1 CDS 33545282 33546358 33545282 ID=Msa0544660-mRNA-1:cds;Parent=Msa0544660-mRNA-1
Gene Sequence

>Msa0544660

ATGGAGATTTCAAGTGGAGGTTGTTCTCCTAGGATTAGGGTAGATCATATGAAAAAAGAGGGATCAGATGAAACACGTTTACGTCAAGCTTTAGAATTGGAACTTTCTGATCATAATCATGAAATTCAATCAATGAATGCTTTGGATATTCTTAGAGAAACTATAAGAATTCTTAGGTTTAATGCATGGGCTTTTATGATAATCGCTTTTTTGCTTATTTGTCCTGTTTCTGCTGTGCTTTTGTCTAATGTATTGGTTGATGAATCTATTGTGAAGAATCTTACTATTAGGCTTATGTTGGTTGCTGAAACTAGTGGTCTTCCTTTGAGACCTATGATTAAGCAATCTTGTCAGAGATTTGCGGATACGGTGATTGCTTCGGCGATGTGTTTTCCTTTGTATGCTACATTGTTGTTATTGTCGAAAACGGCTGTGGTTTATTCTGTTGATTGTACTTATTCGAGAAAGAAGTTTGATGGTTCGAAGTTTTGTGTTATTGTGGCTAAGTTTTGGAGGAAGATACTTGCGACGTATATGTGGGCTTGTACAGTTATTGTTGGTTGCATCACTATGTTTTGTGTTTTCCTTGTTGCGTTTTGTAGTGCATTGGCTGTTCTTGGGTTTTCTCCTAATGTTGTTGTGTATGCTGCATTGATGGTCGGATTAGTTTTCTCTGTTGTATTTGCGAATGCGATAATCATTTGCAGCGTTGCGTTGGTGATCTCGGTTCTGGAGGATGTTTCGGGGGCGCAGGCAATGCTAAGGTCGAGTATTTTAATTAAGGGTCAGACTCAGGTCGGTCTGCTAATATATCTTGGATCAACAATAGGAATGGCCTTTGTGGAGGGGTTGTTTGAGCACAGAGTAAAGACGCTGAGTTATGGTGATGGATCTTCGAGAATGTGGGAAGGGCCGCTCTTGGTGATAATGTATTCGTTTGTGGTCCTTATAGATTCTATGATGAGTGCGGTTTTCTATTTCAGTTGTAGATCTTTTAGCATGGAGAACTCAAATGGTGATGGAAACTCAATTTTAGAAACTATGGCCATTTCTGCTGAAACAATGGGCATTCAATGA

Protein sequence

>Msa0544660

MEISSGGCSPRIRVDHMKKEGSDETRLRQALELELSDHNHEIQSMNALDILRETIRILRFNAWAFMIIAFLLICPVSAVLLSNVLVDESIVKNLTIRLMLVAETSGLPLRPMIKQSCQRFADTVIASAMCFPLYATLLLLSKTAVVYSVDCTYSRKKFDGSKFCVIVAKFWRKILATYMWACTVIVGCITMFCVFLVAFCSALAVLGFSPNVVVYAALMVGLVFSVVFANAIIICSVALVISVLEDVSGAQAMLRSSILIKGQTQVGLLIYLGSTIGMAFVEGLFEHRVKTLSYGDGSSRMWEGPLLVIMYSFVVLIDSMMSAVFYFSCRSFSMENSNGDGNSILETMAISAETMGIQ*