Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541680 | XP_003630561.2 | 98.198 | 444 | 7 | 1 | 1 | 444 | 1 | 443 | 0.0 | 906 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541680 | sp|Q8RY00|SIA2_ARATH | 78.788 | 429 | 88 | 2 | 14 | 442 | 14 | 439 | 0.0 | 725 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541680 | G7LI40 | 98.198 | 444 | 7 | 1 | 1 | 444 | 1 | 443 | 0.0 | 906 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0541680 | Msa0570210 | 0.843171 | 1.651017e-58 | -8.615850e-47 |
| Msa0541680 | Msa0570280 | 0.835374 | 1.741579e-56 | -8.615850e-47 |
| Msa0541680 | Msa0570300 | 0.820825 | 5.590552e-53 | -8.615850e-47 |
| Msa0541680 | Msa0570370 | 0.831959 | 1.241490e-55 | -8.615850e-47 |
| Msa0541680 | Msa0570380 | 0.829595 | 4.713669e-55 | -8.615850e-47 |
| Msa0541680 | Msa0570410 | 0.828644 | 8.016652e-55 | -8.615850e-47 |
| Msa0541680 | Msa0570910 | 0.822002 | 2.990248e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541680 | MtrunA17_Chr8g0385931 | 98.198 | 444 | 7 | 1 | 1 | 444 | 1 | 443 | 0.0 | 906 |
| Msa0541680 | MtrunA17_Chr7g0252121 | 42.227 | 431 | 216 | 9 | 40 | 444 | 50 | 473 | 9.34e-111 | 334 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541680 | AT3G48820.1 | 78.788 | 429 | 88 | 2 | 14 | 442 | 14 | 439 | 0.0 | 725 |
| Msa0541680 | AT3G48820.2 | 78.089 | 429 | 82 | 3 | 14 | 442 | 14 | 430 | 0.0 | 711 |
| Msa0541680 | AT1G08660.1 | 42.489 | 466 | 233 | 9 | 2 | 439 | 8 | 466 | 9.65e-120 | 358 |
| Msa0541680 | AT1G08660.2 | 51.299 | 308 | 142 | 5 | 37 | 343 | 43 | 343 | 3.62e-110 | 329 |
| Msa0541680 | AT1G08660.3 | 52.650 | 283 | 128 | 4 | 62 | 343 | 15 | 292 | 1.47e-105 | 315 |
Find 155 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAAAACGTGTTTATATTA+TGG | 0.123511 | 4_1:-25705985 | None:intergenic |
| CTTCATAAATATAATATAAT+TGG | 0.138889 | 4_1:+25705946 | Msa0541680:three_prime_UTR |
| GGGAAGTATGGTGGTGTTTC+GGG | 0.164848 | 4_1:-25703425 | None:intergenic |
| GAAACCTTACCACACATTTC+TGG | 0.172341 | 4_1:-25702018 | None:intergenic |
| GCCAATTGAAGCTATGAATT+AGG | 0.176170 | 4_1:-25701748 | None:intergenic |
| AGCTTCAAGTTCACCGGTTT+TGG | 0.180620 | 4_1:-25702355 | None:intergenic |
| ATCCAAACCGTGTGGTAAAA+TGG | 0.189886 | 4_1:+25704726 | Msa0541680:CDS |
| TCCTAGCCGCCCTTATAATA+TGG | 0.210799 | 4_1:-25704760 | None:intergenic |
| CCAGTGACACCATTCCTAAA+TGG | 0.231814 | 4_1:+25702185 | Msa0541680:CDS |
| TTAGGAATATTTACCCATTT+AGG | 0.252210 | 4_1:-25702199 | None:intergenic |
| TTTAGCTTGCTTCTTAACTA+TGG | 0.260463 | 4_1:-25705473 | None:intergenic |
| AGGGAAGTATGGTGGTGTTT+CGG | 0.267578 | 4_1:-25703426 | None:intergenic |
| TTCCAAGTCCCCATATTATA+AGG | 0.285737 | 4_1:+25704750 | Msa0541680:CDS |
| CTGTGCTGTTATTGGTAATT+CGG | 0.288884 | 4_1:+25703463 | Msa0541680:CDS |
| ATGTCATCAGCTTGATAAAA+TGG | 0.290321 | 4_1:+25705729 | Msa0541680:three_prime_UTR |
| TAAAGAATCAATGAATTTCT+TGG | 0.291410 | 4_1:-25702643 | None:intergenic |
| CGAAATTTCGAGATTGAATC+TGG | 0.297274 | 4_1:-25701719 | None:intergenic |
| GCAAAACGTGTTTATATTAT+GGG | 0.302424 | 4_1:-25705984 | None:intergenic |
| CCAATTGAAGCTATGAATTA+GGG | 0.306026 | 4_1:-25701747 | None:intergenic |
| CGTTACAGCTCAACTTGTTA+TGG | 0.309926 | 4_1:-25705911 | None:intergenic |
| TTCAGTACGGTTCAATCATT+TGG | 0.313850 | 4_1:-25705623 | None:intergenic |
| TTCATCAGTGAGGTGATAAC+TGG | 0.315515 | 4_1:-25701960 | None:intergenic |
| GATCTCTTGAAAACAAGATT+TGG | 0.317148 | 4_1:+25703488 | Msa0541680:CDS |
| TTGTTGCTTGCTTTAGCATC+TGG | 0.335089 | 4_1:+25701803 | Msa0541680:CDS |
| GGTTCAGCTGCAAAAGGAAC+CGG | 0.344335 | 4_1:+25704052 | Msa0541680:CDS |
| CCATACTTCCCTAGACAGTA+TGG | 0.349266 | 4_1:+25703437 | Msa0541680:CDS |
| TTCATTGATTCTTTACCAAA+TGG | 0.351360 | 4_1:+25702651 | Msa0541680:CDS |
| TATGGGCGCTGTGCTGTTAT+TGG | 0.363705 | 4_1:+25703455 | Msa0541680:CDS |
| GATAAAGTTGTTGAATTAGA+TGG | 0.365529 | 4_1:+25703725 | Msa0541680:CDS |
| GGAGCTTCATACTTGGGGTT+TGG | 0.377812 | 4_1:+25705756 | Msa0541680:three_prime_UTR |
| AGATATACAGGGTTTCTTAT+AGG | 0.378205 | 4_1:-25704010 | None:intergenic |
| CCCTAATTCATAGCTTCAAT+TGG | 0.379844 | 4_1:+25701747 | Msa0541680:five_prime_UTR |
| CTCATGCTAGGTGCTTCCTT+TGG | 0.384537 | 4_1:+25704031 | Msa0541680:CDS |
| CCATACTGTCTAGGGAAGTA+TGG | 0.392953 | 4_1:-25703437 | None:intergenic |
| AAAGGCAGCATTTGATCATA+TGG | 0.396846 | 4_1:+25705525 | Msa0541680:CDS |
| TGTGCTGTTATTGGTAATTC+GGG | 0.400694 | 4_1:+25703464 | Msa0541680:CDS |
| CCTAGCCGCCCTTATAATAT+GGG | 0.402773 | 4_1:-25704759 | None:intergenic |
| AACAACTTTATCCAGGGCTT+TGG | 0.405394 | 4_1:-25703714 | None:intergenic |
| TTCTTCTGTCGGGAAGCATC+TGG | 0.414124 | 4_1:+25705662 | Msa0541680:three_prime_UTR |
| TTCAATGAGGATTCTTCGAT+TGG | 0.415527 | 4_1:+25701778 | Msa0541680:exon |
| GCACCTAGCATGAGATATAC+AGG | 0.415674 | 4_1:-25704022 | None:intergenic |
| TGCAAAAGGAACCGGGCTTA+AGG | 0.416314 | 4_1:+25704060 | Msa0541680:CDS |
| TCCTTTGGTTCAGCTGCAAA+AGG | 0.423855 | 4_1:+25704046 | Msa0541680:CDS |
| CAATTATATTATATTTATGA+AGG | 0.425167 | 4_1:-25705945 | None:intergenic |
| CTAATTCAACAACTTTATCC+AGG | 0.426379 | 4_1:-25703721 | None:intergenic |
| AGATTTGGAAAGGAGATAGA+TGG | 0.435574 | 4_1:+25703503 | Msa0541680:CDS |
| GCAGAAACCGCTGCGAGAAC+AGG | 0.438906 | 4_1:+25703369 | Msa0541680:intron |
| TGGCAATGGAGCTTCATACT+TGG | 0.439875 | 4_1:+25705749 | Msa0541680:three_prime_UTR |
| AGTGCAAAGCAACCCATGTC+CGG | 0.442191 | 4_1:-25705590 | None:intergenic |
| TGTGATCAATTTCTTCTGTC+GGG | 0.444699 | 4_1:+25705652 | Msa0541680:three_prime_UTR |
| GATGTGGTCTTAAGAGAAAA+TGG | 0.446580 | 4_1:+25703530 | Msa0541680:CDS |
| GCATACTCCTCCCACCCATT+TGG | 0.447815 | 4_1:-25702666 | None:intergenic |
| CAGTGACACCATTCCTAAAT+GGG | 0.448835 | 4_1:+25702186 | Msa0541680:CDS |
| TCATTGATTCTTTACCAAAT+GGG | 0.450771 | 4_1:+25702652 | Msa0541680:CDS |
| CCATTTAGGAATGGTGTCAC+TGG | 0.455695 | 4_1:-25702185 | None:intergenic |
| CTCCCAAGCACTCCATCATC+TGG | 0.457469 | 4_1:-25704316 | None:intergenic |
| TTTGTTCATGATGTCATGAA+TGG | 0.459272 | 4_1:-25703868 | None:intergenic |
| GGCAATGGAGCTTCATACTT+GGG | 0.460306 | 4_1:+25705750 | Msa0541680:three_prime_UTR |
| GATCAGCTCTCATGGGAGAA+TGG | 0.461970 | 4_1:-25704706 | None:intergenic |
| TACAGAAGGTTCGGAGAGTC+CGG | 0.462429 | 4_1:-25701852 | None:intergenic |
| TAATACCATTCTTTATAGCC+AGG | 0.463008 | 4_1:-25704142 | None:intergenic |
| TCCAAACCGTGTGGTAAAAT+GGG | 0.465398 | 4_1:+25704727 | Msa0541680:CDS |
| TATGGCTTCACTGTGGATCC+TGG | 0.466550 | 4_1:+25704124 | Msa0541680:CDS |
| AGCTGTGGCCACATGGGAAC+AGG | 0.467280 | 4_1:+25702404 | Msa0541680:CDS |
| GCTTGGCGTAGGATCAATAA+AGG | 0.468052 | 4_1:+25702687 | Msa0541680:CDS |
| CGGTTCAATCATTTGGCACT+TGG | 0.469763 | 4_1:-25705616 | None:intergenic |
| TTACCAGATGATGGAGTGCT+TGG | 0.472129 | 4_1:+25704313 | Msa0541680:CDS |
| GCTTCATACTTGGGGTTTGG+AGG | 0.475121 | 4_1:+25705759 | Msa0541680:three_prime_UTR |
| CTCTACCATGCAACGGCGTA+TGG | 0.475443 | 4_1:-25704286 | None:intergenic |
| ACGGTTTGGATCAGCTCTCA+TGG | 0.476271 | 4_1:-25704714 | None:intergenic |
| TATGATCAAATGCTGCCTTT+CGG | 0.480865 | 4_1:-25705522 | None:intergenic |
| ATGTGATCAATTTCTTCTGT+CGG | 0.484468 | 4_1:+25705651 | Msa0541680:three_prime_UTR |
| GCCATTTGTATTTACATCAC+CGG | 0.493708 | 4_1:+25701833 | Msa0541680:CDS |
| GTGCAGAGTGCAAATGGACT+TGG | 0.495862 | 4_1:+25702109 | Msa0541680:intron |
| AGATAGAGCTTCAAGTTCAC+CGG | 0.499166 | 4_1:-25702361 | None:intergenic |
| TCCAAGTCCCCATATTATAA+GGG | 0.500019 | 4_1:+25704751 | Msa0541680:CDS |
| TCGAGGATCTGCCAAAGCCC+TGG | 0.500630 | 4_1:+25703703 | Msa0541680:CDS |
| ATACATACATACAGAAGGTT+CGG | 0.502516 | 4_1:-25701861 | None:intergenic |
| TCCGGTGATGTAAATACAAA+TGG | 0.502969 | 4_1:-25701834 | None:intergenic |
| TCAATGAGGATTCTTCGATT+GGG | 0.506002 | 4_1:+25701779 | Msa0541680:exon |
| AAGGCAGCATTTGATCATAT+GGG | 0.509915 | 4_1:+25705526 | Msa0541680:CDS |
| TAACAGAAAGATCCCAAAAC+CGG | 0.511961 | 4_1:+25702342 | Msa0541680:intron |
| GCCCTTATAATATGGGGACT+TGG | 0.513589 | 4_1:-25704752 | None:intergenic |
| GCACAGCGCCCATACTGTCT+AGG | 0.514239 | 4_1:-25703446 | None:intergenic |
| CTGGAGCATAGTCCCGGACA+TGG | 0.519320 | 4_1:+25705577 | Msa0541680:CDS |
| CATCATGAACAAAATGATCA+AGG | 0.519724 | 4_1:+25703878 | Msa0541680:CDS |
| TACCAGATGATGGAGTGCTT+GGG | 0.521083 | 4_1:+25704314 | Msa0541680:CDS |
| GAATTTCTTGGTGAGAATAG+TGG | 0.526136 | 4_1:-25702631 | None:intergenic |
| TATCCTCTGGAGCATAGTCC+CGG | 0.531152 | 4_1:+25705571 | Msa0541680:CDS |
| TGGATCCTGGCTATAAAGAA+TGG | 0.531996 | 4_1:+25704137 | Msa0541680:CDS |
| AATATTTACCCATTTAGGAA+TGG | 0.532039 | 4_1:-25702194 | None:intergenic |
| CTTGAAAACAAGATTTGGAA+AGG | 0.532426 | 4_1:+25703493 | Msa0541680:CDS |
| GAGCACAACCATGTATCCTC+TGG | 0.536009 | 4_1:+25705558 | Msa0541680:CDS |
| ACTATGCTCCAGAGGATACA+TGG | 0.536033 | 4_1:-25705566 | None:intergenic |
| TAATTCAACAACTTTATCCA+GGG | 0.541642 | 4_1:-25703720 | None:intergenic |
| TAGAGCTTATTACCAGATGA+TGG | 0.544103 | 4_1:+25704304 | Msa0541680:CDS |
| GTTCAGCTGCAAAAGGAACC+GGG | 0.544216 | 4_1:+25704053 | Msa0541680:CDS |
| GTGCAAAGCAACCCATGTCC+GGG | 0.552522 | 4_1:-25705589 | None:intergenic |
| TTGATTCTTTACCAAATGGG+TGG | 0.556317 | 4_1:+25702655 | Msa0541680:CDS |
| TGTGATTCAGTGGATATGTA+TGG | 0.556586 | 4_1:+25704106 | Msa0541680:CDS |
| TGATTCTTTACCAAATGGGT+GGG | 0.557082 | 4_1:+25702656 | Msa0541680:CDS |
| TGTGGTTTGACAGTAATCAC+TGG | 0.563628 | 4_1:-25702152 | None:intergenic |
| ACTATACTGAATACGTGGGT+AGG | 0.565449 | 4_1:+25703657 | Msa0541680:CDS |
| CGAGAACAGGACCTTGTGCA+TGG | 0.566447 | 4_1:+25703382 | Msa0541680:CDS |
| CACAGCGCCCATACTGTCTA+GGG | 0.566529 | 4_1:-25703445 | None:intergenic |
| CAAGGCCATACGCCGTTGCA+TGG | 0.568742 | 4_1:+25704281 | Msa0541680:CDS |
| AGAAAATGGTGCTCCAACAC+AGG | 0.573691 | 4_1:+25703544 | Msa0541680:CDS |
| TTCTTTACCAAATGGGTGGG+AGG | 0.576101 | 4_1:+25702659 | Msa0541680:CDS |
| CGGTTTGGATCAGCTCTCAT+GGG | 0.579412 | 4_1:-25704713 | None:intergenic |
| ATGGGTGGGAGGAGTATGCT+TGG | 0.582024 | 4_1:+25702670 | Msa0541680:CDS |
| CATTTAGGAATGGTGTCACT+GGG | 0.582041 | 4_1:-25702184 | None:intergenic |
| GCAATGGAGCTTCATACTTG+GGG | 0.583525 | 4_1:+25705751 | Msa0541680:three_prime_UTR |
| ACTATGGAACATGCACGCAA+TGG | 0.586223 | 4_1:-25705457 | None:intergenic |
| GGGAGGAGTATGCTTGGCGT+AGG | 0.591457 | 4_1:+25702676 | Msa0541680:CDS |
| TCAGCTTGATAAAATGGCAA+TGG | 0.593500 | 4_1:+25705735 | Msa0541680:three_prime_UTR |
| CACTGAATCACACATGGAGA+GGG | 0.594319 | 4_1:-25704095 | None:intergenic |
| TGGAGCATAGTCCCGGACAT+GGG | 0.595290 | 4_1:+25705578 | Msa0541680:CDS |
| CCTCTCCATGTGTGATTCAG+TGG | 0.595614 | 4_1:+25704096 | Msa0541680:CDS |
| TGCAGTTTCAAAACTCCGAA+AGG | 0.597777 | 4_1:+25705507 | Msa0541680:CDS |
| GGAAGTATGGTGGTGTTTCG+GGG | 0.603180 | 4_1:-25703424 | None:intergenic |
| AACCCTGTATATCTCATGCT+AGG | 0.603739 | 4_1:+25704019 | Msa0541680:CDS |
| ATTGGCAACTAAGTTCAATG+AGG | 0.604183 | 4_1:+25701765 | Msa0541680:exon |
| CATATCCACTGAATCACACA+TGG | 0.610997 | 4_1:-25704101 | None:intergenic |
| GTCACTGGGAAAACTTATTG+TGG | 0.611690 | 4_1:-25702170 | None:intergenic |
| TATGTGAAGCTGTGGCCACA+TGG | 0.615013 | 4_1:+25702397 | Msa0541680:CDS |
| TCATCAGTGAGGTGATAACT+GGG | 0.620328 | 4_1:-25701959 | None:intergenic |
| AAATTCAAGAGCCTTAAGCC+CGG | 0.624388 | 4_1:-25704071 | None:intergenic |
| GATCACATAAGATTTCAGTA+CGG | 0.625141 | 4_1:-25705636 | None:intergenic |
| GGAGATAGATGGTTATGATG+TGG | 0.625992 | 4_1:+25703514 | Msa0541680:CDS |
| ACATTTCGTCTTCTAAATCG+AGG | 0.628109 | 4_1:+25703686 | Msa0541680:CDS |
| CCCATATTATAAGGGCGGCT+AGG | 0.629308 | 4_1:+25704759 | Msa0541680:CDS |
| GTTGATCAACTAACCTGTGT+TGG | 0.631542 | 4_1:-25703557 | None:intergenic |
| CATACTTCCCTAGACAGTAT+GGG | 0.637488 | 4_1:+25703438 | Msa0541680:CDS |
| GCAGAACTATACTGAATACG+TGG | 0.637788 | 4_1:+25703652 | Msa0541680:intron |
| CTAGCCGCCCTTATAATATG+GGG | 0.640261 | 4_1:-25704758 | None:intergenic |
| CACCTAGCATGAGATATACA+GGG | 0.642472 | 4_1:-25704021 | None:intergenic |
| TAACTCTTTCCAGAAATGTG+TGG | 0.643147 | 4_1:+25702009 | Msa0541680:CDS |
| ACAAGGTCCTGTTCTCGCAG+CGG | 0.645836 | 4_1:-25703376 | None:intergenic |
| TAATAAGCTCTACCATGCAA+CGG | 0.648031 | 4_1:-25704293 | None:intergenic |
| AGGCAGCATTTGATCATATG+GGG | 0.651630 | 4_1:+25705527 | Msa0541680:CDS |
| CATACATACATACATACAGA+AGG | 0.654274 | 4_1:-25701866 | None:intergenic |
| CCACTGAATCACACATGGAG+AGG | 0.654918 | 4_1:-25704096 | None:intergenic |
| TGAAAGTTTCTCCATGCACA+AGG | 0.655622 | 4_1:-25703393 | None:intergenic |
| TGTCCGGGACTATGCTCCAG+AGG | 0.668323 | 4_1:-25705574 | None:intergenic |
| AAGTCCCCATATTATAAGGG+CGG | 0.671059 | 4_1:+25704754 | Msa0541680:CDS |
| TACTGTCTAGGGAAGTATGG+TGG | 0.686540 | 4_1:-25703434 | None:intergenic |
| ATGTGAAGCTGTGGCCACAT+GGG | 0.687320 | 4_1:+25702398 | Msa0541680:CDS |
| ATTCAGCTTCTTCATCAGTG+AGG | 0.694845 | 4_1:-25701970 | None:intergenic |
| TATTTCTCTGAATCTCGACA+AGG | 0.700218 | 4_1:+25704263 | Msa0541680:CDS |
| AAAGCTTACCTGTTCCCATG+TGG | 0.710847 | 4_1:-25702412 | None:intergenic |
| CAGAACTATACTGAATACGT+GGG | 0.713525 | 4_1:+25703653 | Msa0541680:intron |
| GACAAGATGATAGAACAACT+AGG | 0.724690 | 4_1:+25705859 | Msa0541680:three_prime_UTR |
| GAGAGCTGATCCAAACCGTG+TGG | 0.731846 | 4_1:+25704718 | Msa0541680:CDS |
| TTGCGTCAGAGAAATTACTG+AGG | 0.771834 | 4_1:+25704783 | Msa0541680:CDS |
| GGATATGTATGGCTTCACTG+TGG | 0.776130 | 4_1:+25704117 | Msa0541680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTATATTATATTTATGA+AGG | - | chr4_1:25705948-25705967 | None:intergenic | 10.0% |
| !! | CTTCATAAATATAATATAAT+TGG | + | chr4_1:25705946-25705965 | Msa0541680:three_prime_UTR | 10.0% |
| !! | TTACTTAATAGTTAGTATAA+GGG | - | chr4_1:25702235-25702254 | None:intergenic | 15.0% |
| !! | TTTACTTAATAGTTAGTATA+AGG | - | chr4_1:25702236-25702255 | None:intergenic | 15.0% |
| !!! | AACATATATTTAAAACACAA+AGG | - | chr4_1:25702469-25702488 | None:intergenic | 15.0% |
| !! | AATTAAAATGCAATTGAATT+TGG | - | chr4_1:25702797-25702816 | None:intergenic | 15.0% |
| !! | TAACTATAAGTAGTTATAAA+AGG | - | chr4_1:25703282-25703301 | None:intergenic | 15.0% |
| !! | AAAAAAAAATCTATAGAACA+CGG | - | chr4_1:25704856-25704875 | None:intergenic | 15.0% |
| !! | ATTATACATTTATTCTCATA+TGG | - | chr4_1:25704922-25704941 | None:intergenic | 15.0% |
| !! | AATTATAGTATCAAATTTCT+TGG | + | chr4_1:25705017-25705036 | Msa0541680:intron | 15.0% |
| !! | AAAAACAATGTGATAGAATA+TGG | - | chr4_1:25701905-25701924 | None:intergenic | 20.0% |
| !! | TAAAGAATCAATGAATTTCT+TGG | - | chr4_1:25702646-25702665 | None:intergenic | 20.0% |
| !! | TAGTTATAAAAGGATAAACA+TGG | - | chr4_1:25703272-25703291 | None:intergenic | 20.0% |
| !! | AACTACTTATAGTTAAATTC+AGG | + | chr4_1:25703287-25703306 | Msa0541680:intron | 20.0% |
| !! | TGTCCTGAAATAAATTTATA+AGG | - | chr4_1:25704240-25704259 | None:intergenic | 20.0% |
| !!! | GTGTTTATTTTGTATTGAAT+TGG | + | chr4_1:25704595-25704614 | Msa0541680:intron | 20.0% |
| !! | GAATAAATGTATAATTGTCA+TGG | + | chr4_1:25704927-25704946 | Msa0541680:intron | 20.0% |
| !! | AAAATTTCAGTTGTCTTAAT+AGG | - | chr4_1:25705051-25705070 | None:intergenic | 20.0% |
| !! | TAAAAATTAAAGATAGCAAG+TGG | + | chr4_1:25705255-25705274 | Msa0541680:intron | 20.0% |
| !!! | TCTCAATTTATGTTTTTTAC+AGG | + | chr4_1:25705410-25705429 | Msa0541680:intron | 20.0% |
| !!! | AATTAACAGAAGATTTTGAA+TGG | - | chr4_1:25705695-25705714 | None:intergenic | 20.0% |
| !!! | ACTACAAATATTCTGATTTT+TGG | + | chr4_1:25705831-25705850 | Msa0541680:three_prime_UTR | 20.0% |
| ! | AATATTTACCCATTTAGGAA+TGG | - | chr4_1:25702197-25702216 | None:intergenic | 25.0% |
| ! | TTAGGAATATTTACCCATTT+AGG | - | chr4_1:25702202-25702221 | None:intergenic | 25.0% |
| !! | TTTAACTAATTTTACACCAC+AGG | - | chr4_1:25702284-25702303 | None:intergenic | 25.0% |
| !!! | TTCATTGATTCTTTACCAAA+TGG | + | chr4_1:25702651-25702670 | Msa0541680:CDS | 25.0% |
| !!! | TCATTGATTCTTTACCAAAT+GGG | + | chr4_1:25702652-25702671 | Msa0541680:CDS | 25.0% |
| ! | TTGAATAGTTGTAGTCTATA+AGG | + | chr4_1:25702764-25702783 | Msa0541680:intron | 25.0% |
| !!! | CTGTGTTTTATTTCAACATT+TGG | + | chr4_1:25703074-25703093 | Msa0541680:intron | 25.0% |
| ! | TGTTATAAAGTCTCACAAAT+AGG | + | chr4_1:25703333-25703352 | Msa0541680:intron | 25.0% |
| ! | GAAAGAAAATTACACAAACA+TGG | - | chr4_1:25703582-25703601 | None:intergenic | 25.0% |
| ! | TAATTCAACAACTTTATCCA+GGG | - | chr4_1:25703723-25703742 | None:intergenic | 25.0% |
| ! | GATAAAGTTGTTGAATTAGA+TGG | + | chr4_1:25703725-25703744 | Msa0541680:CDS | 25.0% |
| !! | AATGGTATTAAATGATTTGC+TGG | + | chr4_1:25704155-25704174 | Msa0541680:intron | 25.0% |
| !!! | ATGGTATTAAATGATTTGCT+GGG | + | chr4_1:25704156-25704175 | Msa0541680:intron | 25.0% |
| !! | AGGCCTTATAAATTTATTTC+AGG | + | chr4_1:25704234-25704253 | Msa0541680:intron | 25.0% |
| ! | TACTTATTAGTTATTACTGC+TGG | + | chr4_1:25704350-25704369 | Msa0541680:intron | 25.0% |
| !!! | ATGAAGATGATTTTAAGTTC+CGG | + | chr4_1:25704407-25704426 | Msa0541680:intron | 25.0% |
| ! | TGATACTAATGACTTTCATT+TGG | + | chr4_1:25704446-25704465 | Msa0541680:intron | 25.0% |
| !! | ATAAAGATTTTCCTTGATGT+TGG | + | chr4_1:25704481-25704500 | Msa0541680:intron | 25.0% |
| !! | ATTATTGAAGTGTTCAACTA+AGG | + | chr4_1:25704550-25704569 | Msa0541680:intron | 25.0% |
| ! | TTGTATAAATCATAAGCAAG+TGG | + | chr4_1:25704573-25704592 | Msa0541680:intron | 25.0% |
| !!! | AGTGTTCTATAGATTTTAAC+AGG | + | chr4_1:25704894-25704913 | Msa0541680:intron | 25.0% |
| !!! | GTGTTCTATAGATTTTAACA+GGG | + | chr4_1:25704895-25704914 | Msa0541680:intron | 25.0% |
| !! | AGCTTAAACTTTTGAATAGT+TGG | - | chr4_1:25704954-25704973 | None:intergenic | 25.0% |
| ! | TATTCAAAAGTTTAAGCTGT+TGG | + | chr4_1:25704956-25704975 | Msa0541680:intron | 25.0% |
| !!! | TTCAAGTTTTTAAACATTGC+AGG | - | chr4_1:25705136-25705155 | None:intergenic | 25.0% |
| !!! | AATATTCTGATTTTTGGTTG+AGG | + | chr4_1:25705837-25705856 | Msa0541680:three_prime_UTR | 25.0% |
| ! | GCAAAACGTGTTTATATTAT+GGG | - | chr4_1:25705987-25706006 | None:intergenic | 25.0% |
| ! | AGCAAAACGTGTTTATATTA+TGG | - | chr4_1:25705988-25706007 | None:intergenic | 25.0% |
| !! | AAACACGTTTTGCTTATATT+TGG | + | chr4_1:25705994-25706013 | Msa0541680:three_prime_UTR | 25.0% |
| !! | GATTGATTTTGCAATCATAG+TGG | + | chr4_1:25701688-25701707 | Msa0541680:five_prime_UTR | 30.0% |
| CCAATTGAAGCTATGAATTA+GGG | - | chr4_1:25701750-25701769 | None:intergenic | 30.0% | |
| ATACATACATACAGAAGGTT+CGG | - | chr4_1:25701864-25701883 | None:intergenic | 30.0% | |
| CATACATACATACATACAGA+AGG | - | chr4_1:25701869-25701888 | None:intergenic | 30.0% | |
| ! | TTTTAATCTATGTGAAGCTG+TGG | + | chr4_1:25702389-25702408 | Msa0541680:CDS | 30.0% |
| ! | AAAGGAGAGTATAAACCTAT+GGG | - | chr4_1:25702451-25702470 | None:intergenic | 30.0% |
| AGGGTAATTTAACAGTATTG+TGG | - | chr4_1:25702564-25702583 | None:intergenic | 30.0% | |
| GATCTCTTGAAAACAAGATT+TGG | + | chr4_1:25703488-25703507 | Msa0541680:CDS | 30.0% | |
| CTTGAAAACAAGATTTGGAA+AGG | + | chr4_1:25703493-25703512 | Msa0541680:CDS | 30.0% | |
| CTAATTCAACAACTTTATCC+AGG | - | chr4_1:25703724-25703743 | None:intergenic | 30.0% | |
| ! | AAGGCTCTAGTAATTCATAA+TGG | - | chr4_1:25703793-25703812 | None:intergenic | 30.0% |
| CAGAAACAGCATTTATAGTA+AGG | - | chr4_1:25703812-25703831 | None:intergenic | 30.0% | |
| TTTGTTCATGATGTCATGAA+TGG | - | chr4_1:25703871-25703890 | None:intergenic | 30.0% | |
| CATCATGAACAAAATGATCA+AGG | + | chr4_1:25703878-25703897 | Msa0541680:CDS | 30.0% | |
| ! | AATTAAAGGATCTTTGAAGG+TGG | - | chr4_1:25703926-25703945 | None:intergenic | 30.0% |
| AGCAATTAAAGGATCTTTGA+AGG | - | chr4_1:25703929-25703948 | None:intergenic | 30.0% | |
| AAATGGGTATATAGAATGTG+TGG | - | chr4_1:25703955-25703974 | None:intergenic | 30.0% | |
| AGATATACAGGGTTTCTTAT+AGG | - | chr4_1:25704013-25704032 | None:intergenic | 30.0% | |
| TAATACCATTCTTTATAGCC+AGG | - | chr4_1:25704145-25704164 | None:intergenic | 30.0% | |
| !! | TTAAATGATTTGCTGGGAAT+TGG | + | chr4_1:25704162-25704181 | Msa0541680:intron | 30.0% |
| AATGTGATTACTTGATCAGT+AGG | + | chr4_1:25704214-25704233 | Msa0541680:intron | 30.0% | |
| TTATTAGTTATTACTGCTGG+TGG | + | chr4_1:25704353-25704372 | Msa0541680:intron | 30.0% | |
| ATAATTATCAGCCAACATCA+AGG | - | chr4_1:25704495-25704514 | None:intergenic | 30.0% | |
| ATGATTATACTCAAACTGCT+AGG | - | chr4_1:25704623-25704642 | None:intergenic | 30.0% | |
| GGAAATAAAGAACAAAATGG+GGG | - | chr4_1:25704825-25704844 | None:intergenic | 30.0% | |
| GGGAAATAAAGAACAAAATG+GGG | - | chr4_1:25704826-25704845 | None:intergenic | 30.0% | |
| GGGGAAATAAAGAACAAAAT+GGG | - | chr4_1:25704827-25704846 | None:intergenic | 30.0% | |
| AGGGGAAATAAAGAACAAAA+TGG | - | chr4_1:25704828-25704847 | None:intergenic | 30.0% | |
| TAAATCATGTTCATGAGTGA+AGG | + | chr4_1:25705096-25705115 | Msa0541680:intron | 30.0% | |
| !!! | TATGTTTTTTACAGGAGAGT+TGG | + | chr4_1:25705418-25705437 | Msa0541680:intron | 30.0% |
| !! | TTTAGCTTGCTTCTTAACTA+TGG | - | chr4_1:25705476-25705495 | None:intergenic | 30.0% |
| GATCACATAAGATTTCAGTA+CGG | - | chr4_1:25705639-25705658 | None:intergenic | 30.0% | |
| ATGTGATCAATTTCTTCTGT+CGG | + | chr4_1:25705651-25705670 | Msa0541680:three_prime_UTR | 30.0% | |
| ! | AACAGAAGATTTTGAATGGT+AGG | - | chr4_1:25705691-25705710 | None:intergenic | 30.0% |
| ATGTCATCAGCTTGATAAAA+TGG | + | chr4_1:25705729-25705748 | Msa0541680:three_prime_UTR | 30.0% | |
| !!! | CTCAGTTTTTTATGTCTCGT+TGG | - | chr4_1:25701664-25701683 | None:intergenic | 35.0% |
| CGAAATTTCGAGATTGAATC+TGG | - | chr4_1:25701722-25701741 | None:intergenic | 35.0% | |
| CCCTAATTCATAGCTTCAAT+TGG | + | chr4_1:25701747-25701766 | Msa0541680:five_prime_UTR | 35.0% | |
| GCCAATTGAAGCTATGAATT+AGG | - | chr4_1:25701751-25701770 | None:intergenic | 35.0% | |
| ATTGGCAACTAAGTTCAATG+AGG | + | chr4_1:25701765-25701784 | Msa0541680:exon | 35.0% | |
| TTCAATGAGGATTCTTCGAT+TGG | + | chr4_1:25701778-25701797 | Msa0541680:exon | 35.0% | |
| TCAATGAGGATTCTTCGATT+GGG | + | chr4_1:25701779-25701798 | Msa0541680:exon | 35.0% | |
| GCCATTTGTATTTACATCAC+CGG | + | chr4_1:25701833-25701852 | Msa0541680:CDS | 35.0% | |
| TCCGGTGATGTAAATACAAA+TGG | - | chr4_1:25701837-25701856 | None:intergenic | 35.0% | |
| TAACTCTTTCCAGAAATGTG+TGG | + | chr4_1:25702009-25702028 | Msa0541680:CDS | 35.0% | |
| ATTTGACTGAGTAGCTGATT+TGG | + | chr4_1:25702080-25702099 | Msa0541680:intron | 35.0% | |
| TATAAGGGCAGTGAATGATT+AGG | - | chr4_1:25702220-25702239 | None:intergenic | 35.0% | |
| TTCATATACTTAGTCACCTG+TGG | + | chr4_1:25702265-25702284 | Msa0541680:intron | 35.0% | |
| TAACAGAAAGATCCCAAAAC+CGG | + | chr4_1:25702342-25702361 | Msa0541680:intron | 35.0% | |
| TTGTGATTGTCAATACCCAT+AGG | + | chr4_1:25702433-25702452 | Msa0541680:intron | 35.0% | |
| ! | CAAAGGAGAGTATAAACCTA+TGG | - | chr4_1:25702452-25702471 | None:intergenic | 35.0% |
| GAATTTCTTGGTGAGAATAG+TGG | - | chr4_1:25702634-25702653 | None:intergenic | 35.0% | |
| TTGATTCTTTACCAAATGGG+TGG | + | chr4_1:25702655-25702674 | Msa0541680:CDS | 35.0% | |
| TGATTCTTTACCAAATGGGT+GGG | + | chr4_1:25702656-25702675 | Msa0541680:CDS | 35.0% | |
| TTGATTATAAACTGCCACAG+AGG | + | chr4_1:25702873-25702892 | Msa0541680:intron | 35.0% | |
| TGTGGTATATCATGTGAACT+AGG | + | chr4_1:25702978-25702997 | Msa0541680:intron | 35.0% | |
| AACACAGCTAATTCTAGTGA+TGG | - | chr4_1:25703061-25703080 | None:intergenic | 35.0% | |
| TTATGTCGCACAGTATTACA+AGG | + | chr4_1:25703109-25703128 | Msa0541680:intron | 35.0% | |
| GGAAAAGATGGCATAAGAAA+AGG | - | chr4_1:25703182-25703201 | None:intergenic | 35.0% | |
| TATGTTGCGTTTAGCAATCA+AGG | - | chr4_1:25703211-25703230 | None:intergenic | 35.0% | |
| AAAAGGATAAACATGGAACG+TGG | - | chr4_1:25703265-25703284 | None:intergenic | 35.0% | |
| ! | CTGTGCTGTTATTGGTAATT+CGG | + | chr4_1:25703463-25703482 | Msa0541680:CDS | 35.0% |
| ! | TGTGCTGTTATTGGTAATTC+GGG | + | chr4_1:25703464-25703483 | Msa0541680:CDS | 35.0% |
| AGATTTGGAAAGGAGATAGA+TGG | + | chr4_1:25703503-25703522 | Msa0541680:CDS | 35.0% | |
| ! | GATGTGGTCTTAAGAGAAAA+TGG | + | chr4_1:25703530-25703549 | Msa0541680:CDS | 35.0% |
| AGACGTGAATAGAACTTAGT+GGG | - | chr4_1:25703632-25703651 | None:intergenic | 35.0% | |
| CAGAACTATACTGAATACGT+GGG | + | chr4_1:25703653-25703672 | Msa0541680:intron | 35.0% | |
| ACATTTCGTCTTCTAAATCG+AGG | + | chr4_1:25703686-25703705 | Msa0541680:CDS | 35.0% | |
| CATAATGGCATTGTAACAAG+TGG | - | chr4_1:25703778-25703797 | None:intergenic | 35.0% | |
| AAGGTATGTTTCCTCATCAA+TGG | + | chr4_1:25703897-25703916 | Msa0541680:intron | 35.0% | |
| ATACCCATTTGCAAAGCAAT+CGG | + | chr4_1:25703965-25703984 | Msa0541680:intron | 35.0% | |
| TGTGATTCAGTGGATATGTA+TGG | + | chr4_1:25704106-25704125 | Msa0541680:CDS | 35.0% | |
| TATTTCTCTGAATCTCGACA+AGG | + | chr4_1:25704263-25704282 | Msa0541680:CDS | 35.0% | |
| TAATAAGCTCTACCATGCAA+CGG | - | chr4_1:25704296-25704315 | None:intergenic | 35.0% | |
| TAGAGCTTATTACCAGATGA+TGG | + | chr4_1:25704304-25704323 | Msa0541680:CDS | 35.0% | |
| !!! | AAGATGATTTTAAGTTCCGG+AGG | + | chr4_1:25704410-25704429 | Msa0541680:intron | 35.0% |
| !!! | AGATGATTTTAAGTTCCGGA+GGG | + | chr4_1:25704411-25704430 | Msa0541680:intron | 35.0% |
| AATGAAGAAGGTAGATGAGA+AGG | - | chr4_1:25704669-25704688 | None:intergenic | 35.0% | |
| GATCAGCTTAACAATGAAGA+AGG | - | chr4_1:25704681-25704700 | None:intergenic | 35.0% | |
| TTCCAAGTCCCCATATTATA+AGG | + | chr4_1:25704750-25704769 | Msa0541680:CDS | 35.0% | |
| TCCAAGTCCCCATATTATAA+GGG | + | chr4_1:25704751-25704770 | Msa0541680:CDS | 35.0% | |
| TCTATAGAACACGGTTTGAA+GGG | - | chr4_1:25704847-25704866 | None:intergenic | 35.0% | |
| ATCTATAGAACACGGTTTGA+AGG | - | chr4_1:25704848-25704867 | None:intergenic | 35.0% | |
| CCAAATGAAGCCATACAAAA+GGG | - | chr4_1:25705173-25705192 | None:intergenic | 35.0% | |
| CAGTTAGAGAGATAATCTGA+AGG | - | chr4_1:25705235-25705254 | None:intergenic | 35.0% | |
| ATTTGTGATCAGACAATTGC+AGG | - | chr4_1:25705319-25705338 | None:intergenic | 35.0% | |
| TATGATCAAATGCTGCCTTT+CGG | - | chr4_1:25705525-25705544 | None:intergenic | 35.0% | |
| AAAGGCAGCATTTGATCATA+TGG | + | chr4_1:25705525-25705544 | Msa0541680:CDS | 35.0% | |
| AAGGCAGCATTTGATCATAT+GGG | + | chr4_1:25705526-25705545 | Msa0541680:CDS | 35.0% | |
| TTCAGTACGGTTCAATCATT+TGG | - | chr4_1:25705626-25705645 | None:intergenic | 35.0% | |
| TGTGATCAATTTCTTCTGTC+GGG | + | chr4_1:25705652-25705671 | Msa0541680:three_prime_UTR | 35.0% | |
| ! | AGAAGATTTTGAATGGTAGG+CGG | - | chr4_1:25705688-25705707 | None:intergenic | 35.0% |
| TCAGCTTGATAAAATGGCAA+TGG | + | chr4_1:25705735-25705754 | Msa0541680:three_prime_UTR | 35.0% | |
| GACAAGATGATAGAACAACT+AGG | + | chr4_1:25705859-25705878 | Msa0541680:three_prime_UTR | 35.0% | |
| ! | TTGTTGCTTGCTTTAGCATC+TGG | + | chr4_1:25701803-25701822 | Msa0541680:CDS | 40.0% |
| TCATCAGTGAGGTGATAACT+GGG | - | chr4_1:25701962-25701981 | None:intergenic | 40.0% | |
| TTCATCAGTGAGGTGATAAC+TGG | - | chr4_1:25701963-25701982 | None:intergenic | 40.0% | |
| ATTCAGCTTCTTCATCAGTG+AGG | - | chr4_1:25701973-25701992 | None:intergenic | 40.0% | |
| CTTTCCAGAAATGTGTGGTA+AGG | + | chr4_1:25702014-25702033 | Msa0541680:intron | 40.0% | |
| GAAACCTTACCACACATTTC+TGG | - | chr4_1:25702021-25702040 | None:intergenic | 40.0% | |
| ! | TGTTTTGTGCAGAGTGCAAA+TGG | + | chr4_1:25702103-25702122 | Msa0541680:intron | 40.0% |
| TGTGGTTTGACAGTAATCAC+TGG | - | chr4_1:25702155-25702174 | None:intergenic | 40.0% | |
| GTCACTGGGAAAACTTATTG+TGG | - | chr4_1:25702173-25702192 | None:intergenic | 40.0% | |
| !! | CATTTAGGAATGGTGTCACT+GGG | - | chr4_1:25702187-25702206 | None:intergenic | 40.0% |
| CAGTGACACCATTCCTAAAT+GGG | + | chr4_1:25702186-25702205 | Msa0541680:CDS | 40.0% | |
| ! | AGATAGAGCTTCAAGTTCAC+CGG | - | chr4_1:25702364-25702383 | None:intergenic | 40.0% |
| TGAAATTCGCATAACCTCTG+TGG | - | chr4_1:25702890-25702909 | None:intergenic | 40.0% | |
| ATATACCACACACCTTCTTC+GGG | - | chr4_1:25702968-25702987 | None:intergenic | 40.0% | |
| GATATACCACACACCTTCTT+CGG | - | chr4_1:25702969-25702988 | None:intergenic | 40.0% | |
| GCAAACAAATGCTAGACTGT+AGG | - | chr4_1:25703140-25703159 | None:intergenic | 40.0% | |
| TGAAAGTTTCTCCATGCACA+AGG | - | chr4_1:25703396-25703415 | None:intergenic | 40.0% | |
| CATACTTCCCTAGACAGTAT+GGG | + | chr4_1:25703438-25703457 | Msa0541680:CDS | 40.0% | |
| GGAGATAGATGGTTATGATG+TGG | + | chr4_1:25703514-25703533 | Msa0541680:CDS | 40.0% | |
| GTTGATCAACTAACCTGTGT+TGG | - | chr4_1:25703560-25703579 | None:intergenic | 40.0% | |
| ! | TGAATAGAACTTAGTGGGCA+AGG | - | chr4_1:25703627-25703646 | None:intergenic | 40.0% |
| CAGACGTGAATAGAACTTAG+TGG | - | chr4_1:25703633-25703652 | None:intergenic | 40.0% | |
| GCAGAACTATACTGAATACG+TGG | + | chr4_1:25703652-25703671 | Msa0541680:intron | 40.0% | |
| ACTATACTGAATACGTGGGT+AGG | + | chr4_1:25703657-25703676 | Msa0541680:CDS | 40.0% | |
| AACAACTTTATCCAGGGCTT+TGG | - | chr4_1:25703717-25703736 | None:intergenic | 40.0% | |
| ATGTGTGGCACAGCAATTAA+AGG | - | chr4_1:25703940-25703959 | None:intergenic | 40.0% | |
| AAGCCGATTGCTTTGCAAAT+GGG | - | chr4_1:25703971-25703990 | None:intergenic | 40.0% | |
| AAAGCCGATTGCTTTGCAAA+TGG | - | chr4_1:25703972-25703991 | None:intergenic | 40.0% | |
| AACCCTGTATATCTCATGCT+AGG | + | chr4_1:25704019-25704038 | Msa0541680:CDS | 40.0% | |
| CACCTAGCATGAGATATACA+GGG | - | chr4_1:25704024-25704043 | None:intergenic | 40.0% | |
| AAATTCAAGAGCCTTAAGCC+CGG | - | chr4_1:25704074-25704093 | None:intergenic | 40.0% | |
| CATATCCACTGAATCACACA+TGG | - | chr4_1:25704104-25704123 | None:intergenic | 40.0% | |
| TGGATCCTGGCTATAAAGAA+TGG | + | chr4_1:25704137-25704156 | Msa0541680:CDS | 40.0% | |
| TTGCTGGGAATTGGTATTTC+TGG | + | chr4_1:25704171-25704190 | Msa0541680:intron | 40.0% | |
| ATCCAAACCGTGTGGTAAAA+TGG | + | chr4_1:25704726-25704745 | Msa0541680:CDS | 40.0% | |
| TCCAAACCGTGTGGTAAAAT+GGG | + | chr4_1:25704727-25704746 | Msa0541680:CDS | 40.0% | |
| ! | TTGGAACCCATTTTACCACA+CGG | - | chr4_1:25704736-25704755 | None:intergenic | 40.0% |
| AAGTCCCCATATTATAAGGG+CGG | + | chr4_1:25704754-25704773 | Msa0541680:CDS | 40.0% | |
| TTGCGTCAGAGAAATTACTG+AGG | + | chr4_1:25704783-25704802 | Msa0541680:CDS | 40.0% | |
| AAAGAACAAAATGGGGGATG+CGG | - | chr4_1:25704819-25704838 | None:intergenic | 40.0% | |
| CTATAGAACACGGTTTGAAG+GGG | - | chr4_1:25704846-25704865 | None:intergenic | 40.0% | |
| GTTGGATGAAAGCTCATGAA+TGG | + | chr4_1:25704974-25704993 | Msa0541680:intron | 40.0% | |
| ! | CCCTTTTGTATGGCTTCATT+TGG | + | chr4_1:25705170-25705189 | Msa0541680:intron | 40.0% |
| GCCAAATGAAGCCATACAAA+AGG | - | chr4_1:25705174-25705193 | None:intergenic | 40.0% | |
| ! | TTCATTTGGCCTCAGACTTT+TGG | + | chr4_1:25705184-25705203 | Msa0541680:intron | 40.0% |
| CGTATAACAGTAAACTGGCA+TGG | - | chr4_1:25705210-25705229 | None:intergenic | 40.0% | |
| AGGCACGTATAACAGTAAAC+TGG | - | chr4_1:25705215-25705234 | None:intergenic | 40.0% | |
| TGCAGTTTCAAAACTCCGAA+AGG | + | chr4_1:25705507-25705526 | Msa0541680:CDS | 40.0% | |
| AGGCAGCATTTGATCATATG+GGG | + | chr4_1:25705527-25705546 | Msa0541680:CDS | 40.0% | |
| !! | CGTTACAGCTCAACTTGTTA+TGG | - | chr4_1:25705914-25705933 | None:intergenic | 40.0% |
| !! | CCATTTAGGAATGGTGTCAC+TGG | - | chr4_1:25702188-25702207 | None:intergenic | 45.0% |
| CCAGTGACACCATTCCTAAA+TGG | + | chr4_1:25702185-25702204 | Msa0541680:CDS | 45.0% | |
| ! | TTGTTGCGATCGTTGACTGA+TGG | + | chr4_1:25702307-25702326 | Msa0541680:intron | 45.0% |
| !!! | GCTTCAAGTTCACCGGTTTT+GGG | - | chr4_1:25702357-25702376 | None:intergenic | 45.0% |
| !!! | AGCTTCAAGTTCACCGGTTT+TGG | - | chr4_1:25702358-25702377 | None:intergenic | 45.0% |
| AAAGCTTACCTGTTCCCATG+TGG | - | chr4_1:25702415-25702434 | None:intergenic | 45.0% | |
| CATTACACACGGCAATAAGC+TGG | - | chr4_1:25702589-25702608 | None:intergenic | 45.0% | |
| ACCTGAGCAGTCATTACACA+CGG | - | chr4_1:25702600-25702619 | None:intergenic | 45.0% | |
| TTCTTTACCAAATGGGTGGG+AGG | + | chr4_1:25702659-25702678 | Msa0541680:CDS | 45.0% | |
| GCTTGGCGTAGGATCAATAA+AGG | + | chr4_1:25702687-25702706 | Msa0541680:CDS | 45.0% | |
| ACCTCAAATGATCTGCAGCT+AGG | + | chr4_1:25702912-25702931 | Msa0541680:intron | 45.0% | |
| CAGCTAGGCAGAGTATATGT+TGG | + | chr4_1:25702927-25702946 | Msa0541680:intron | 45.0% | |
| TCAAGGCAGAGTGGAAAAGA+TGG | - | chr4_1:25703194-25703213 | None:intergenic | 45.0% | |
| GTTTAGCAATCAAGGCAGAG+TGG | - | chr4_1:25703203-25703222 | None:intergenic | 45.0% | |
| ! | AGGGAAGTATGGTGGTGTTT+CGG | - | chr4_1:25703429-25703448 | None:intergenic | 45.0% |
| ! | TACTGTCTAGGGAAGTATGG+TGG | - | chr4_1:25703437-25703456 | None:intergenic | 45.0% |
| CCATACTGTCTAGGGAAGTA+TGG | - | chr4_1:25703440-25703459 | None:intergenic | 45.0% | |
| CCATACTTCCCTAGACAGTA+TGG | + | chr4_1:25703437-25703456 | Msa0541680:CDS | 45.0% | |
| AGAAAATGGTGCTCCAACAC+AGG | + | chr4_1:25703544-25703563 | Msa0541680:CDS | 45.0% | |
| ! | TGGGCAAGGTCTTAGGTTTT+GGG | - | chr4_1:25703613-25703632 | None:intergenic | 45.0% |
| ! | AACTTAGTGGGCAAGGTCTT+AGG | - | chr4_1:25703620-25703639 | None:intergenic | 45.0% |
| ! | GAAGGTGGATTCCATTGATG+AGG | - | chr4_1:25703911-25703930 | None:intergenic | 45.0% |
| !! | AATCGGCTTTTGTCTTCTGC+AGG | + | chr4_1:25703982-25704001 | Msa0541680:intron | 45.0% |
| GCACCTAGCATGAGATATAC+AGG | - | chr4_1:25704025-25704044 | None:intergenic | 45.0% | |
| ! | TCCTTTGGTTCAGCTGCAAA+AGG | + | chr4_1:25704046-25704065 | Msa0541680:CDS | 45.0% |
| ! | TCCTTTTGCAGCTGAACCAA+AGG | - | chr4_1:25704050-25704069 | None:intergenic | 45.0% |
| CACTGAATCACACATGGAGA+GGG | - | chr4_1:25704098-25704117 | None:intergenic | 45.0% | |
| GGATATGTATGGCTTCACTG+TGG | + | chr4_1:25704117-25704136 | Msa0541680:CDS | 45.0% | |
| !! | TTACCAGATGATGGAGTGCT+TGG | + | chr4_1:25704313-25704332 | Msa0541680:CDS | 45.0% |
| !! | TACCAGATGATGGAGTGCTT+GGG | + | chr4_1:25704314-25704333 | Msa0541680:CDS | 45.0% |
| ! | TCACTTTAACTTACGCCCTC+CGG | - | chr4_1:25704429-25704448 | None:intergenic | 45.0% |
| TGACTTTCATTTGGCGCGTA+AGG | + | chr4_1:25704455-25704474 | Msa0541680:intron | 45.0% | |
| ! | ACCCATTTTACCACACGGTT+TGG | - | chr4_1:25704731-25704750 | None:intergenic | 45.0% |
| GCCCTTATAATATGGGGACT+TGG | - | chr4_1:25704755-25704774 | None:intergenic | 45.0% | |
| CTAGCCGCCCTTATAATATG+GGG | - | chr4_1:25704761-25704780 | None:intergenic | 45.0% | |
| CCTAGCCGCCCTTATAATAT+GGG | - | chr4_1:25704762-25704781 | None:intergenic | 45.0% | |
| TCCTAGCCGCCCTTATAATA+TGG | - | chr4_1:25704763-25704782 | None:intergenic | 45.0% | |
| AAGAACAAAATGGGGGATGC+GGG | - | chr4_1:25704818-25704837 | None:intergenic | 45.0% | |
| TGTTCATGAGTGAAGGCTGT+TGG | + | chr4_1:25705103-25705122 | Msa0541680:intron | 45.0% | |
| ! | CTGATCACAGCCCTTTTGTA+TGG | + | chr4_1:25705160-25705179 | Msa0541680:intron | 45.0% |
| GACAATTGCAGGATAGCATG+AGG | - | chr4_1:25705308-25705327 | None:intergenic | 45.0% | |
| ! | TTTTACAGGAGAGTTGGAGC+AGG | + | chr4_1:25705424-25705443 | Msa0541680:intron | 45.0% |
| ACTATGGAACATGCACGCAA+TGG | - | chr4_1:25705460-25705479 | None:intergenic | 45.0% | |
| ACTATGCTCCAGAGGATACA+TGG | - | chr4_1:25705569-25705588 | None:intergenic | 45.0% | |
| CGGTTCAATCATTTGGCACT+TGG | - | chr4_1:25705619-25705638 | None:intergenic | 45.0% | |
| TGGCAATGGAGCTTCATACT+TGG | + | chr4_1:25705749-25705768 | Msa0541680:three_prime_UTR | 45.0% | |
| GGCAATGGAGCTTCATACTT+GGG | + | chr4_1:25705750-25705769 | Msa0541680:three_prime_UTR | 45.0% | |
| GCAATGGAGCTTCATACTTG+GGG | + | chr4_1:25705751-25705770 | Msa0541680:three_prime_UTR | 45.0% | |
| TACAGAAGGTTCGGAGAGTC+CGG | - | chr4_1:25701855-25701874 | None:intergenic | 50.0% | |
| ! | GTGCAGAGTGCAAATGGACT+TGG | + | chr4_1:25702109-25702128 | Msa0541680:intron | 50.0% |
| ! | TTGCGATCGTTGACTGATGG+AGG | + | chr4_1:25702310-25702329 | Msa0541680:intron | 50.0% |
| TATGTGAAGCTGTGGCCACA+TGG | + | chr4_1:25702397-25702416 | Msa0541680:CDS | 50.0% | |
| ATGTGAAGCTGTGGCCACAT+GGG | + | chr4_1:25702398-25702417 | Msa0541680:CDS | 50.0% | |
| ACACGGCAATAAGCTGGCAA+GGG | - | chr4_1:25702583-25702602 | None:intergenic | 50.0% | |
| GTGTAATGACTGCTCAGGTG+CGG | + | chr4_1:25702601-25702620 | Msa0541680:intron | 50.0% | |
| GCCTAGCTGCAGATCATTTG+AGG | - | chr4_1:25702916-25702935 | None:intergenic | 50.0% | |
| TGAGCTCTTCATCCCGAAGA+AGG | + | chr4_1:25702953-25702972 | Msa0541680:intron | 50.0% | |
| ! | TTCATCCCGAAGAAGGTGTG+TGG | + | chr4_1:25702960-25702979 | Msa0541680:intron | 50.0% |
| ! | GGAAGTATGGTGGTGTTTCG+GGG | - | chr4_1:25703427-25703446 | None:intergenic | 50.0% |
| ! | GGGAAGTATGGTGGTGTTTC+GGG | - | chr4_1:25703428-25703447 | None:intergenic | 50.0% |
| ! | TATGGGCGCTGTGCTGTTAT+TGG | + | chr4_1:25703455-25703474 | Msa0541680:CDS | 50.0% |
| ! | GTGGGCAAGGTCTTAGGTTT+TGG | - | chr4_1:25703614-25703633 | None:intergenic | 50.0% |
| CTCATGCTAGGTGCTTCCTT+TGG | + | chr4_1:25704031-25704050 | Msa0541680:CDS | 50.0% | |
| GGTTCAGCTGCAAAAGGAAC+CGG | + | chr4_1:25704052-25704071 | Msa0541680:CDS | 50.0% | |
| GTTCAGCTGCAAAAGGAACC+GGG | + | chr4_1:25704053-25704072 | Msa0541680:CDS | 50.0% | |
| TGCAAAAGGAACCGGGCTTA+AGG | + | chr4_1:25704060-25704079 | Msa0541680:CDS | 50.0% | |
| CCACTGAATCACACATGGAG+AGG | - | chr4_1:25704099-25704118 | None:intergenic | 50.0% | |
| CCTCTCCATGTGTGATTCAG+TGG | + | chr4_1:25704096-25704115 | Msa0541680:CDS | 50.0% | |
| TATGGCTTCACTGTGGATCC+TGG | + | chr4_1:25704124-25704143 | Msa0541680:CDS | 50.0% | |
| GATCAGCTCTCATGGGAGAA+TGG | - | chr4_1:25704709-25704728 | None:intergenic | 50.0% | |
| ! | CGGTTTGGATCAGCTCTCAT+GGG | - | chr4_1:25704716-25704735 | None:intergenic | 50.0% |
| ! | ACGGTTTGGATCAGCTCTCA+TGG | - | chr4_1:25704717-25704736 | None:intergenic | 50.0% |
| CCCATATTATAAGGGCGGCT+AGG | + | chr4_1:25704759-25704778 | Msa0541680:CDS | 50.0% | |
| AGGATAGCATGAGGCATGCA+AGG | - | chr4_1:25705299-25705318 | None:intergenic | 50.0% | |
| GAGCACAACCATGTATCCTC+TGG | + | chr4_1:25705558-25705577 | Msa0541680:CDS | 50.0% | |
| !! | TATCCTCTGGAGCATAGTCC+CGG | + | chr4_1:25705571-25705590 | Msa0541680:CDS | 50.0% |
| AGTGCAAAGCAACCCATGTC+CGG | - | chr4_1:25705593-25705612 | None:intergenic | 50.0% | |
| !! | TTCTTCTGTCGGGAAGCATC+TGG | + | chr4_1:25705662-25705681 | Msa0541680:three_prime_UTR | 50.0% |
| GGAGCTTCATACTTGGGGTT+TGG | + | chr4_1:25705756-25705775 | Msa0541680:three_prime_UTR | 50.0% | |
| GCTTCATACTTGGGGTTTGG+AGG | + | chr4_1:25705759-25705778 | Msa0541680:three_prime_UTR | 50.0% | |
| CACACGGCAATAAGCTGGCA+AGG | - | chr4_1:25702584-25702603 | None:intergenic | 55.0% | |
| GCCGTGTGTAATGACTGCTC+AGG | + | chr4_1:25702596-25702615 | Msa0541680:intron | 55.0% | |
| GCATACTCCTCCCACCCATT+TGG | - | chr4_1:25702669-25702688 | None:intergenic | 55.0% | |
| ! | ATGGGTGGGAGGAGTATGCT+TGG | + | chr4_1:25702670-25702689 | Msa0541680:CDS | 55.0% |
| ACAAGGTCCTGTTCTCGCAG+CGG | - | chr4_1:25703379-25703398 | None:intergenic | 55.0% | |
| CGAGAACAGGACCTTGTGCA+TGG | + | chr4_1:25703382-25703401 | Msa0541680:CDS | 55.0% | |
| CACAGCGCCCATACTGTCTA+GGG | - | chr4_1:25703448-25703467 | None:intergenic | 55.0% | |
| CTCTACCATGCAACGGCGTA+TGG | - | chr4_1:25704289-25704308 | None:intergenic | 55.0% | |
| CTCCCAAGCACTCCATCATC+TGG | - | chr4_1:25704319-25704338 | None:intergenic | 55.0% | |
| GAGAGCTGATCCAAACCGTG+TGG | + | chr4_1:25704718-25704737 | Msa0541680:CDS | 55.0% | |
| CTGGCATGGCCAAAAGTCTG+AGG | - | chr4_1:25705196-25705215 | None:intergenic | 55.0% | |
| TGGAGCATAGTCCCGGACAT+GGG | + | chr4_1:25705578-25705597 | Msa0541680:CDS | 55.0% | |
| GTGCAAAGCAACCCATGTCC+GGG | - | chr4_1:25705592-25705611 | None:intergenic | 55.0% | |
| AGCTGTGGCCACATGGGAAC+AGG | + | chr4_1:25702404-25702423 | Msa0541680:CDS | 60.0% | |
| ! | GGGAGGAGTATGCTTGGCGT+AGG | + | chr4_1:25702676-25702695 | Msa0541680:CDS | 60.0% |
| GCAGAAACCGCTGCGAGAAC+AGG | + | chr4_1:25703369-25703388 | Msa0541680:intron | 60.0% | |
| GCACAGCGCCCATACTGTCT+AGG | - | chr4_1:25703449-25703468 | None:intergenic | 60.0% | |
| TCGAGGATCTGCCAAAGCCC+TGG | + | chr4_1:25703703-25703722 | Msa0541680:CDS | 60.0% | |
| CAAGGCCATACGCCGTTGCA+TGG | + | chr4_1:25704281-25704300 | Msa0541680:CDS | 60.0% | |
| TGTCCGGGACTATGCTCCAG+AGG | - | chr4_1:25705577-25705596 | None:intergenic | 60.0% | |
| CTGGAGCATAGTCCCGGACA+TGG | + | chr4_1:25705577-25705596 | Msa0541680:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 25701578 | 25706017 | 25701578 | ID=Msa0541680;Name=Msa0541680 |
| chr4_1 | mRNA | 25701578 | 25706017 | 25701578 | ID=Msa0541680-mRNA-1;Parent=Msa0541680;Name=Msa0541680-mRNA-1;_AED=0.15;_eAED=0.15;_QI=204|1|1|1|1|1|12|387|444 |
| chr4_1 | exon | 25701578 | 25701875 | 25701578 | ID=Msa0541680-mRNA-1:exon:6943;Parent=Msa0541680-mRNA-1 |
| chr4_1 | exon | 25701957 | 25702030 | 25701957 | ID=Msa0541680-mRNA-1:exon:6944;Parent=Msa0541680-mRNA-1 |
| chr4_1 | exon | 25702115 | 25702207 | 25702115 | ID=Msa0541680-mRNA-1:exon:6945;Parent=Msa0541680-mRNA-1 |
| chr4_1 | exon | 25702348 | 25702425 | 25702348 | ID=Msa0541680-mRNA-1:exon:6946;Parent=Msa0541680-mRNA-1 |
| chr4_1 | exon | 25702618 | 25702718 | 25702618 | ID=Msa0541680-mRNA-1:exon:6947;Parent=Msa0541680-mRNA-1 |
| chr4_1 | exon | 25703373 | 25703565 | 25703373 | ID=Msa0541680-mRNA-1:exon:6948;Parent=Msa0541680-mRNA-1 |
| chr4_1 | exon | 25703656 | 25703746 | 25703656 | ID=Msa0541680-mRNA-1:exon:6949;Parent=Msa0541680-mRNA-1 |
| chr4_1 | exon | 25703835 | 25703899 | 25703835 | ID=Msa0541680-mRNA-1:exon:6950;Parent=Msa0541680-mRNA-1 |
| chr4_1 | exon | 25704004 | 25704158 | 25704004 | ID=Msa0541680-mRNA-1:exon:6951;Parent=Msa0541680-mRNA-1 |
| chr4_1 | exon | 25704256 | 25704337 | 25704256 | ID=Msa0541680-mRNA-1:exon:6952;Parent=Msa0541680-mRNA-1 |
| chr4_1 | exon | 25704695 | 25704804 | 25704695 | ID=Msa0541680-mRNA-1:exon:6953;Parent=Msa0541680-mRNA-1 |
| chr4_1 | exon | 25705432 | 25706017 | 25705432 | ID=Msa0541680-mRNA-1:exon:6954;Parent=Msa0541680-mRNA-1 |
| chr4_1 | five_prime_UTR | 25701578 | 25701781 | 25701578 | ID=Msa0541680-mRNA-1:five_prime_utr;Parent=Msa0541680-mRNA-1 |
| chr4_1 | CDS | 25701782 | 25701875 | 25701782 | ID=Msa0541680-mRNA-1:cds;Parent=Msa0541680-mRNA-1 |
| chr4_1 | CDS | 25701957 | 25702030 | 25701957 | ID=Msa0541680-mRNA-1:cds;Parent=Msa0541680-mRNA-1 |
| chr4_1 | CDS | 25702115 | 25702207 | 25702115 | ID=Msa0541680-mRNA-1:cds;Parent=Msa0541680-mRNA-1 |
| chr4_1 | CDS | 25702348 | 25702425 | 25702348 | ID=Msa0541680-mRNA-1:cds;Parent=Msa0541680-mRNA-1 |
| chr4_1 | CDS | 25702618 | 25702718 | 25702618 | ID=Msa0541680-mRNA-1:cds;Parent=Msa0541680-mRNA-1 |
| chr4_1 | CDS | 25703373 | 25703565 | 25703373 | ID=Msa0541680-mRNA-1:cds;Parent=Msa0541680-mRNA-1 |
| chr4_1 | CDS | 25703656 | 25703746 | 25703656 | ID=Msa0541680-mRNA-1:cds;Parent=Msa0541680-mRNA-1 |
| chr4_1 | CDS | 25703835 | 25703899 | 25703835 | ID=Msa0541680-mRNA-1:cds;Parent=Msa0541680-mRNA-1 |
| chr4_1 | CDS | 25704004 | 25704158 | 25704004 | ID=Msa0541680-mRNA-1:cds;Parent=Msa0541680-mRNA-1 |
| chr4_1 | CDS | 25704256 | 25704337 | 25704256 | ID=Msa0541680-mRNA-1:cds;Parent=Msa0541680-mRNA-1 |
| chr4_1 | CDS | 25704695 | 25704804 | 25704695 | ID=Msa0541680-mRNA-1:cds;Parent=Msa0541680-mRNA-1 |
| chr4_1 | CDS | 25705432 | 25705630 | 25705432 | ID=Msa0541680-mRNA-1:cds;Parent=Msa0541680-mRNA-1 |
| chr4_1 | three_prime_UTR | 25705631 | 25706017 | 25705631 | ID=Msa0541680-mRNA-1:three_prime_utr;Parent=Msa0541680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
