AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0544740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544740 MtrunA17_Chr4g0025311 91.071 168 9 1 236 397 281 448 1.52e-101 310
Msa0544740 MtrunA17_Chr4g0025311 79.310 145 8 1 118 240 70 214 4.94e-70 228
Msa0544740 MtrunA17_Chr2g0322251 72.989 174 27 2 236 389 258 431 1.27e-79 253
Msa0544740 MtrunA17_Chr2g0322251 55.474 137 46 1 118 239 57 193 7.97e-43 155
Msa0544740 MtrunA17_Chr7g0267811 82.353 153 19 2 236 382 267 417 1.81e-79 252
Msa0544740 MtrunA17_Chr7g0267811 56.250 144 34 2 121 240 63 201 7.94e-42 153
Msa0544740 MtrunA17_Chr4g0040481 90.000 120 4 1 1 112 20 139 3.74e-64 211
Msa0544740 MtrunA17_Chr2g0324891 42.246 187 67 9 10 173 23 191 9.18e-22 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544740 AT2G35860.1 76.744 172 25 3 236 394 269 438 1.31e-82 260
Msa0544740 AT2G35860.1 55.782 147 35 2 118 240 62 202 9.17e-43 156
Msa0544740 AT3G52370.1 78.313 166 22 3 236 388 261 425 1.08e-81 258
Msa0544740 AT3G52370.1 57.664 137 44 2 118 240 58 194 1.88e-42 155
Msa0544740 AT3G52370.2 78.313 166 22 3 236 388 314 478 1.76e-81 259
Msa0544740 AT3G52370.2 57.664 137 44 2 118 240 111 247 3.04e-42 155
Msa0544740 AT5G06390.1 76.970 165 24 3 236 388 280 442 6.58e-79 251
Msa0544740 AT5G06390.1 54.667 150 35 2 118 240 70 213 6.26e-43 157
Msa0544740 AT3G11700.1 77.576 165 25 2 236 388 283 447 1.08e-76 246
Msa0544740 AT3G11700.1 50.888 169 46 2 118 255 67 229 2.41e-42 155
Msa0544740 AT5G05650.1 56.522 92 30 2 280 365 2 89 5.81e-28 107

Find 138 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTTGGTTTCCATCTT+TGG 0.144453 4_1:-33647052 None:intergenic
CGGGTTTACCCTTCCGTTCT+TGG 0.196546 4_1:-33648931 None:intergenic
TGCTGGATGCTTGGAACCTT+TGG 0.202242 4_1:+33650288 Msa0544740:CDS
TAACCAATTGAACCGTAAAT+TGG 0.221743 4_1:+33651712 Msa0544740:three_prime_UTR
TTATTAATATATATGTAATT+AGG 0.224366 4_1:+33651388 Msa0544740:three_prime_UTR
ATTCTTCTCTTCCGCTTTGC+TGG 0.231572 4_1:-33647301 None:intergenic
CCTTTCGGAAGGAAATTTAT+TGG 0.245412 4_1:+33647128 Msa0544740:CDS
CTATCTATAATTTAGTTCTT+TGG 0.246000 4_1:+33651737 Msa0544740:three_prime_UTR
TGGAGACATCTTGCCGGATT+TGG 0.249570 4_1:+33647194 Msa0544740:CDS
TAATAGCAGCTGCTATAATA+TGG 0.259605 4_1:+33651262 Msa0544740:three_prime_UTR
TCGCAACAATGGTTGGTTAA+TGG 0.287229 4_1:+33647893 Msa0544740:CDS
TAACGAGATGGCGGATATTC+TGG 0.301192 4_1:+33648496 Msa0544740:CDS
TTCTTCTCTTCCGCTTTGCT+GGG 0.303962 4_1:-33647300 None:intergenic
GTTTGACCCGGATATTTATA+CGG 0.315626 4_1:+33648826 Msa0544740:CDS
AATTGCTGGAAACGGCTTGC+TGG 0.350753 4_1:+33650271 Msa0544740:CDS
TTATAGATAGTACCAATTTA+CGG 0.352693 4_1:-33651724 None:intergenic
GCTGATGGGTCGGTTAAATT+CGG 0.358905 4_1:+33648779 Msa0544740:CDS
AACTTCGACGACTTCTTTGT+TGG 0.363264 4_1:+33647159 Msa0544740:CDS
TTAGCCATAGCTTCATCATT+TGG 0.365438 4_1:-33648590 None:intergenic
TGCTATTATAATTCAATAGA+AGG 0.376580 4_1:+33651426 Msa0544740:three_prime_UTR
GCGATAATCCGTTCCCGATT+CGG 0.378739 4_1:+33651483 Msa0544740:three_prime_UTR
CTCCCATCCGTATAAATATC+CGG 0.383323 4_1:-33648833 None:intergenic
AGTAAAATTACTTACCGAAT+CGG 0.384391 4_1:-33651497 None:intergenic
TGAGGATAAAACAAGTTGTT+CGG 0.385599 4_1:+33647338 Msa0544740:CDS
AAAAGAAGAGGTTGTTGATA+AGG 0.389174 4_1:+33648901 Msa0544740:CDS
GATGAATTCCTCGGCGTCAT+TGG 0.395120 4_1:+33647272 Msa0544740:CDS
GGGTTTACCCTTCCGTTCTT+GGG 0.397284 4_1:-33648930 None:intergenic
CAGCTGCTATAATATGGGTT+TGG 0.402644 4_1:+33651268 Msa0544740:three_prime_UTR
GAGGATAAAACAAGTTGTTC+GGG 0.407784 4_1:+33647339 Msa0544740:CDS
ATTTCTGTGCAAGGGATTGA+TGG 0.408807 4_1:+33648857 Msa0544740:CDS
TGATAGTACATAATTTGTTC+CGG 0.408846 4_1:-33648647 None:intergenic
GCCAGCTTTACTTGAATGAA+TGG 0.410328 4_1:+33651238 Msa0544740:three_prime_UTR
TACTTTGAGATTGCCTCATA+AGG 0.412712 4_1:+33648742 Msa0544740:CDS
GTGAACCCGGTTCACTCAAC+TGG 0.414386 4_1:-33648625 None:intergenic
AGACCTGATGGTGTTATTCA+TGG 0.414707 4_1:+33647947 Msa0544740:CDS
TAGAAGGTTGTGGGGTGAAA+AGG 0.415580 4_1:+33651442 Msa0544740:three_prime_UTR
TTAAAAGATGCAAGTGGAAA+AGG 0.416680 4_1:+33647420 Msa0544740:CDS
TCTTCAGCATCAACCTTATG+AGG 0.417041 4_1:-33648755 None:intergenic
GTACCAATTTACGGTTCAAT+TGG 0.420537 4_1:-33651715 None:intergenic
CGGCGACTTCGGTGACCTTT+CGG 0.423356 4_1:+33647113 Msa0544740:CDS
TTTACTCAAGAAATTGAAGA+TGG 0.423678 4_1:+33651514 Msa0544740:three_prime_UTR
ACAGATCCATTGATTCTAGT+TGG 0.427215 4_1:-33647794 None:intergenic
AACGGACCAGTTGAGTGAAC+CGG 0.429059 4_1:+33648619 Msa0544740:CDS
TGCTTGGCCACAACCTTAGC+GGG 0.430153 4_1:-33648950 None:intergenic
GAGAACTCAGCAAACATCTC+TGG 0.443524 4_1:-33647225 None:intergenic
CTCTCTTCAGTTTGATACTC+AGG 0.448810 4_1:-33648677 None:intergenic
TGAAATGACAGGAAAATTGC+TGG 0.451486 4_1:+33650257 Msa0544740:intron
CAAGATCTCGTTCTAGAGCT+TGG 0.454955 4_1:-33647694 None:intergenic
ACAATTACAACCGGCGACTT+CGG 0.457007 4_1:+33647102 Msa0544740:CDS
GAAACGGCTTGCTGGATGCT+TGG 0.459511 4_1:+33650279 Msa0544740:CDS
ATAATTCAATAGAAGGTTGT+GGG 0.462939 4_1:+33651433 Msa0544740:three_prime_UTR
GTTAAATTCGGGCATGGTGA+TGG 0.463040 4_1:+33648791 Msa0544740:CDS
ACCATTCATTCAAGTAAAGC+TGG 0.464865 4_1:-33651239 None:intergenic
TATAATTCAATAGAAGGTTG+TGG 0.466155 4_1:+33651432 Msa0544740:three_prime_UTR
GAATTCAAAGAAAGATTATG+AGG 0.466750 4_1:+33647320 Msa0544740:CDS
TTGAAAGGCTTCTTATTCCT+AGG 0.467599 4_1:+33647972 Msa0544740:CDS
ATTATCCCAACTAGAATCAA+TGG 0.468002 4_1:+33647788 Msa0544740:CDS
GATGAGTAGGTTAGTATCAG+AGG 0.468619 4_1:+33648544 Msa0544740:CDS
CAGATCCATTGATTCTAGTT+GGG 0.469398 4_1:-33647793 None:intergenic
GTAAAATTACTTACCGAATC+GGG 0.472525 4_1:-33651496 None:intergenic
AATAGCAGCTGCTATAATAT+GGG 0.475828 4_1:+33651263 Msa0544740:three_prime_UTR
TCTGGATCCATCTCCAAATC+CGG 0.478975 4_1:-33647207 None:intergenic
CTGAGGAACACTACCAAAGA+TGG 0.481384 4_1:+33647039 Msa0544740:five_prime_UTR
CGTCGATGGAGACATCTTGC+CGG 0.485716 4_1:+33647188 Msa0544740:CDS
CTGATGGGTCGGTTAAATTC+GGG 0.490096 4_1:+33648780 Msa0544740:CDS
ATTCCATGAATAACACCATC+AGG 0.490128 4_1:-33647950 None:intergenic
TTAAACCATCCGATTCAATT+CGG 0.492178 4_1:-33651692 None:intergenic
ATTCCGTGGCTCTAAGAGAA+AGG 0.494098 4_1:-33647732 None:intergenic
TTTCTGTGCAAGGGATTGAT+GGG 0.500163 4_1:+33648858 Msa0544740:CDS
CATCTTGCCGGATTTGGAGA+TGG 0.503664 4_1:+33647200 Msa0544740:CDS
GACCCGGATATTTATACGGA+TGG 0.509583 4_1:+33648830 Msa0544740:CDS
GGGAGTACAACAATTACAAC+CGG 0.510212 4_1:+33647093 Msa0544740:CDS
GACAGGAAAATTGCTGGAAA+CGG 0.514359 4_1:+33650263 Msa0544740:intron
GTGTTATTCATGGAATTGAA+AGG 0.521049 4_1:+33647957 Msa0544740:CDS
TGTGAAAATAGAGAGACATA+AGG 0.522511 4_1:-33651584 None:intergenic
TTTGTTGGCATCAACGTCGA+TGG 0.522723 4_1:+33647174 Msa0544740:CDS
AGCACCAAATGATGAAGCTA+TGG 0.522967 4_1:+33648586 Msa0544740:CDS
AGATGGAAACCAAGAAGAGA+TGG 0.523180 4_1:+33647056 Msa0544740:exon
TTCCGCTTATTTGTTTGACC+CGG 0.525077 4_1:+33648814 Msa0544740:CDS
ATTACTTACCGAATCGGGAA+CGG 0.527231 4_1:-33651491 None:intergenic
ATAATTTGTTCCGGTGAACC+CGG 0.528069 4_1:-33648638 None:intergenic
TTGCTTGGCCACAACCTTAG+CGG 0.531460 4_1:-33648951 None:intergenic
CCAATAAATTTCCTTCCGAA+AGG 0.532064 4_1:-33647128 None:intergenic
ATGAGTAGGTTAGTATCAGA+GGG 0.533753 4_1:+33648545 Msa0544740:CDS
ACCCGGATATTTATACGGAT+GGG 0.536086 4_1:+33648831 Msa0544740:CDS
GTTGAGTGAACCGGGTTCAC+CGG 0.536161 4_1:+33648628 Msa0544740:CDS
GGCTGTGACCCAAGAACGGA+AGG 0.537283 4_1:+33648922 Msa0544740:CDS
TCCCATCCGTATAAATATCC+GGG 0.540655 4_1:-33648832 None:intergenic
AAAACAAGTTGTTCGGGTCA+AGG 0.542391 4_1:+33647345 Msa0544740:CDS
CGAAAGGTCACCGAAGTCGC+CGG 0.551097 4_1:-33647112 None:intergenic
TGAAACATCGCAACAATGGT+TGG 0.551947 4_1:+33647886 Msa0544740:CDS
AAACCTTTGTGCTCTCATCA+AGG 0.559881 4_1:-33651349 None:intergenic
AAGATGACTTTAACCGTAGG+AGG 0.563097 4_1:+33648002 Msa0544740:CDS
TTCTGTGCAAGGGATTGATG+GGG 0.568281 4_1:+33648859 Msa0544740:CDS
AAGTTGTTCGGGTCAAGGCT+CGG 0.571650 4_1:+33647350 Msa0544740:CDS
TCTTCTCTTCCGCTTTGCTG+GGG 0.576625 4_1:-33647299 None:intergenic
TCTGCATTGATCTTGACTTG+TGG 0.576933 4_1:+33651661 Msa0544740:three_prime_UTR
ACGGACCAGTTGAGTGAACC+GGG 0.578352 4_1:+33648620 Msa0544740:CDS
ATGGGAGGATTTCTGTGCAA+GGG 0.579676 4_1:+33648849 Msa0544740:CDS
ACGGAAGGGTAAACCCGCTA+AGG 0.584103 4_1:+33648937 Msa0544740:CDS
AAGTCATCTTGAACAGACCT+AGG 0.591283 4_1:-33647989 None:intergenic
GAACTTAACGTCGTTAGCGA+CGG 0.595166 4_1:+33648520 Msa0544740:CDS
AAACCTTTCTCTTAGAGCCA+CGG 0.597093 4_1:+33647729 Msa0544740:CDS
GACTTCGGTGACCTTTCGGA+AGG 0.597816 4_1:+33647117 Msa0544740:CDS
GAAATGAAACATCGCAACAA+TGG 0.598171 4_1:+33647882 Msa0544740:CDS
GGGTCGGTTAAATTCGGGCA+TGG 0.604050 4_1:+33648785 Msa0544740:CDS
ATTGCTGCAATTAAACCCGA+AGG 0.616715 4_1:+33648037 Msa0544740:CDS
TTATGGAGGTTATAACGAGA+TGG 0.617430 4_1:+33648484 Msa0544740:intron
CGTTAGCGACGGAGATGAGT+AGG 0.618054 4_1:+33648531 Msa0544740:CDS
GATGGGAGGATTTCTGTGCA+AGG 0.618422 4_1:+33648848 Msa0544740:CDS
TAGAAACAAGACTCCTCCTA+CGG 0.619567 4_1:-33648015 None:intergenic
TGAAGAGATTTAAGATTCCG+TGG 0.620500 4_1:-33647746 None:intergenic
GGAATCAGAGATGAATTCCT+CGG 0.620947 4_1:+33647263 Msa0544740:CDS
ATCCGGGTCAAACAAATAAG+CGG 0.621117 4_1:-33648816 None:intergenic
GAATCTAGAATGCTGTCCAA+AGG 0.621135 4_1:-33650304 None:intergenic
CGGATATTTATACGGATGGG+AGG 0.627609 4_1:+33648834 Msa0544740:CDS
ATAAGGCTGTGACCCAAGAA+CGG 0.632729 4_1:+33648918 Msa0544740:CDS
GTTGATGCTGAAGAAGCTGA+TGG 0.639771 4_1:+33648764 Msa0544740:CDS
TCAACAAAGAGAAAATCAAG+AGG 0.639788 4_1:-33651319 None:intergenic
TAATTCAATAGAAGGTTGTG+GGG 0.642432 4_1:+33651434 Msa0544740:three_prime_UTR
CAACAAAGAGAAAATCAAGA+GGG 0.643918 4_1:-33651318 None:intergenic
TCTTTGGTAGTGTTCCTCAG+TGG 0.652633 4_1:-33647036 None:intergenic
GAAAATAGAGAGACATAAGG+AGG 0.652961 4_1:-33651581 None:intergenic
AATGATGTTACAAGACCTGA+TGG 0.654239 4_1:+33647935 Msa0544740:CDS
TGCTGAAGAAGCTGATGGGT+CGG 0.664468 4_1:+33648769 Msa0544740:CDS
TTCAAGATGACTTTAACCGT+AGG 0.668564 4_1:+33647999 Msa0544740:CDS
TTGATGCTGAAGAAGCTGAT+GGG 0.675714 4_1:+33648765 Msa0544740:CDS
GGGGTTCTCCAATGACGCCG+AGG 0.684455 4_1:-33647280 None:intergenic
GGTCCTTGATGAGAGCACAA+AGG 0.686198 4_1:+33651346 Msa0544740:three_prime_UTR
GAGTAAAAGAGATGAATCTG+TGG 0.689938 4_1:+33647383 Msa0544740:CDS
CCATTGTTAAAAGATGCAAG+TGG 0.691122 4_1:+33647414 Msa0544740:CDS
GTTCTCCGTTAGTTACGGCG+AGG 0.691247 4_1:+33647242 Msa0544740:intron
TGGAGGTTATAACGAGATGG+CGG 0.695354 4_1:+33648487 Msa0544740:intron
CAAACACTAGAAGACACTGT+CGG 0.700543 4_1:+33647638 Msa0544740:intron
AGCTATGGCTAAGTTAACAA+CGG 0.711535 4_1:+33648601 Msa0544740:CDS
ATTGGAGAACCCCAGCAAAG+CGG 0.728169 4_1:+33647290 Msa0544740:CDS
GCTGTGACCCAAGAACGGAA+GGG 0.741038 4_1:+33648923 Msa0544740:CDS
TGCTTGCAGTGTCACCACTG+AGG 0.812976 4_1:+33647022 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATATTAAATATATAAAG+TGG + chr4_1:33649794-33649813 Msa0544740:intron 10.0%
!!! AACTACATAAATTTTTATCA+TGG - chr4_1:33649302-33649321 None:intergenic 15.0%
!! TAAGTTATACAATTGTAATA+TGG + chr4_1:33649599-33649618 Msa0544740:intron 15.0%
!! CAATTAGTAAATAAATTCAA+CGG - chr4_1:33650002-33650021 None:intergenic 15.0%
!! AGTTATAATTTAATCTGATT+TGG + chr4_1:33650624-33650643 Msa0544740:intron 15.0%
!!! TTATTTATGATTTGGTATTT+TGG - chr4_1:33651046-33651065 None:intergenic 15.0%
!! ATGCTTATTTATTTATGATT+TGG - chr4_1:33651054-33651073 None:intergenic 15.0%
!!! TTCTTTTTAATTCCATATTT+TGG + chr4_1:33651077-33651096 Msa0544740:intron 15.0%
!! TTGAATATAATCAGATGTAT+TGG - chr4_1:33648295-33648314 None:intergenic 20.0%
!!! ACTTTTTCCTTTATTTTGTT+TGG + chr4_1:33649012-33649031 Msa0544740:intron 20.0%
!!! CTTTTTCCTTTATTTTGTTT+GGG + chr4_1:33649013-33649032 Msa0544740:intron 20.0%
!!! TTTTAAGTCAAGAAGAAAAT+AGG + chr4_1:33649040-33649059 Msa0544740:intron 20.0%
!! TTTAAGTCAAGAAGAAAATA+GGG + chr4_1:33649041-33649060 Msa0544740:intron 20.0%
!! GATATAAAGTGATTTATGTT+TGG + chr4_1:33649347-33649366 Msa0544740:intron 20.0%
!! TCTCTATAATATAAACATGA+AGG - chr4_1:33649428-33649447 None:intergenic 20.0%
!! ATTTAGCAAAGAAAAATACT+TGG - chr4_1:33649645-33649664 None:intergenic 20.0%
!!! AATTGTTTTCTTCTGATATA+CGG + chr4_1:33649662-33649681 Msa0544740:intron 20.0%
!! TCTAAACCTTAAAAAAGAAA+AGG + chr4_1:33649758-33649777 Msa0544740:intron 20.0%
!!! TTAAGACCTTTTCTTTTTTA+AGG - chr4_1:33649767-33649786 None:intergenic 20.0%
!!! ATTTAAGTTGTTTATCCAAA+CGG + chr4_1:33650946-33650965 Msa0544740:intron 20.0%
!! TAAACTTAGAAACCAAAATA+TGG - chr4_1:33651092-33651111 None:intergenic 20.0%
!! AACTTAGAAAGCTAATTAAA+TGG - chr4_1:33651120-33651139 None:intergenic 20.0%
!! TGCTATTATAATTCAATAGA+AGG + chr4_1:33651426-33651445 Msa0544740:three_prime_UTR 20.0%
!!! TACTGTAATATGATCTTTTA+TGG + chr4_1:33651555-33651574 Msa0544740:three_prime_UTR 20.0%
!! TTATAGATAGTACCAATTTA+CGG - chr4_1:33651727-33651746 None:intergenic 20.0%
!!! CTATCTATAATTTAGTTCTT+TGG + chr4_1:33651737-33651756 Msa0544740:three_prime_UTR 20.0%
! GAATTCAAAGAAAGATTATG+AGG + chr4_1:33647320-33647339 Msa0544740:CDS 25.0%
!!! AGAGAAAGGTTTTGAAATTT+GGG - chr4_1:33647721-33647740 None:intergenic 25.0%
!!! AAGAGAAAGGTTTTGAAATT+TGG - chr4_1:33647722-33647741 None:intergenic 25.0%
!!! TTGTAACTAACTTGTTTTTC+AGG + chr4_1:33648392-33648411 Msa0544740:intron 25.0%
! ATTCAAACACTGATACATTA+TGG + chr4_1:33648467-33648486 Msa0544740:intron 25.0%
!!! TGATAGTACATAATTTGTTC+CGG - chr4_1:33648650-33648669 None:intergenic 25.0%
! TATAATGCTGTTAGAAGATT+TGG + chr4_1:33648704-33648723 Msa0544740:intron 25.0%
! ATAATGCTGTTAGAAGATTT+GGG + chr4_1:33648705-33648724 Msa0544740:intron 25.0%
!! AATAGGGAAAAAGTACAAAA+AGG + chr4_1:33649057-33649076 Msa0544740:intron 25.0%
! TGATTATGATGTGTTCAATT+TGG + chr4_1:33649080-33649099 Msa0544740:intron 25.0%
!!! GAAAGTATTTACTTTGACAT+TGG + chr4_1:33649213-33649232 Msa0544740:intron 25.0%
!!! TACTTTGACATTGGTTTATT+AGG + chr4_1:33649222-33649241 Msa0544740:intron 25.0%
!!! ACTTTGACATTGGTTTATTA+GGG + chr4_1:33649223-33649242 Msa0544740:intron 25.0%
! TGAATAGAACAATAAGTTAG+AGG + chr4_1:33649387-33649406 Msa0544740:intron 25.0%
!!! AGTTGATTTTGACATGTTTA+AGG - chr4_1:33649475-33649494 None:intergenic 25.0%
!!! AAAATCAACTTTTTCAGTTC+AGG + chr4_1:33649485-33649504 Msa0544740:intron 25.0%
! TGCACTAAGACTTATATTAT+AGG + chr4_1:33649541-33649560 Msa0544740:intron 25.0%
! TGTAGCAAATAGATTACTTA+AGG + chr4_1:33649722-33649741 Msa0544740:intron 25.0%
!!! AGTAATGAATCTTTTTCACT+TGG + chr4_1:33649925-33649944 Msa0544740:intron 25.0%
! GAATGGTTTACTAATTTGAT+GGG + chr4_1:33649947-33649966 Msa0544740:intron 25.0%
! GGAGATATAGATAATACAAA+TGG - chr4_1:33650025-33650044 None:intergenic 25.0%
!! GCTATAAAGTATCATTGAAA+AGG - chr4_1:33650182-33650201 None:intergenic 25.0%
! TGAGTCATCTAATATTTCAA+GGG - chr4_1:33650593-33650612 None:intergenic 25.0%
! ATGAGTCATCTAATATTTCA+AGG - chr4_1:33650594-33650613 None:intergenic 25.0%
! ATTAATCTCACAAGTGTTTA+AGG - chr4_1:33650755-33650774 None:intergenic 25.0%
! TAAACACTTGTGAGATTAAT+TGG + chr4_1:33650755-33650774 Msa0544740:intron 25.0%
!!! TTTAAGTTGTTTATCCAAAC+GGG + chr4_1:33650947-33650966 Msa0544740:intron 25.0%
!!! TTTTGGATTTGAAATCACAT+GGG - chr4_1:33651029-33651048 None:intergenic 25.0%
!!! ATTTTGGATTTGAAATCACA+TGG - chr4_1:33651030-33651049 None:intergenic 25.0%
! AGAAAGCTAATTAAATGGTT+AGG - chr4_1:33651115-33651134 None:intergenic 25.0%
! GAGAAGAAAAAACAAAAAGT+TGG - chr4_1:33651299-33651318 None:intergenic 25.0%
!!! TGATTTTCTCTTTGTTGATT+TGG + chr4_1:33651324-33651343 Msa0544740:three_prime_UTR 25.0%
!!! GATTTTCTCTTTGTTGATTT+GGG + chr4_1:33651325-33651344 Msa0544740:three_prime_UTR 25.0%
! TATAATTCAATAGAAGGTTG+TGG + chr4_1:33651432-33651451 Msa0544740:three_prime_UTR 25.0%
! ATAATTCAATAGAAGGTTGT+GGG + chr4_1:33651433-33651452 Msa0544740:three_prime_UTR 25.0%
!!! AAAGGTTTTGTGTAATAAGA+AGG + chr4_1:33651460-33651479 Msa0544740:three_prime_UTR 25.0%
!!! AAGGTTTTGTGTAATAAGAA+GGG + chr4_1:33651461-33651480 Msa0544740:three_prime_UTR 25.0%
! AGTAAAATTACTTACCGAAT+CGG - chr4_1:33651500-33651519 None:intergenic 25.0%
! TTTACTCAAGAAATTGAAGA+TGG + chr4_1:33651514-33651533 Msa0544740:three_prime_UTR 25.0%
TGAGGATAAAACAAGTTGTT+CGG + chr4_1:33647338-33647357 Msa0544740:CDS 30.0%
TTAAAAGATGCAAGTGGAAA+AGG + chr4_1:33647420-33647439 Msa0544740:CDS 30.0%
AGTAAATCTAAGAATCCTCA+AGG + chr4_1:33647456-33647475 Msa0544740:intron 30.0%
GTAAATCTAAGAATCCTCAA+GGG + chr4_1:33647457-33647476 Msa0544740:intron 30.0%
ATTATCCCAACTAGAATCAA+TGG + chr4_1:33647788-33647807 Msa0544740:CDS 30.0%
! GTGTTATTCATGGAATTGAA+AGG + chr4_1:33647957-33647976 Msa0544740:CDS 30.0%
!!! TCTTCCTATTTTTGATGCAT+TGG + chr4_1:33648135-33648154 Msa0544740:intron 30.0%
AAAAGAAGAGGTTGTTGATA+AGG + chr4_1:33648901-33648920 Msa0544740:CDS 30.0%
AACACACCCAAACAAAATAA+AGG - chr4_1:33649022-33649041 None:intergenic 30.0%
TATGATGTGTTCAATTTGGT+TGG + chr4_1:33649084-33649103 Msa0544740:intron 30.0%
! AACTTTATGTGCTATGCTTT+TGG + chr4_1:33649128-33649147 Msa0544740:intron 30.0%
TATAAGTCTTAGTGCATGTT+TGG - chr4_1:33649537-33649556 None:intergenic 30.0%
ACTTAAATCACATATTCCAC+AGG - chr4_1:33649584-33649603 None:intergenic 30.0%
!! GGATGTTAGGTTTGATTTTT+AGG + chr4_1:33649683-33649702 Msa0544740:intron 30.0%
! CAATTTTCAGTGACATGTAT+AGG - chr4_1:33649824-33649843 None:intergenic 30.0%
!! TGAATCTTTTTCACTTGGAA+TGG + chr4_1:33649930-33649949 Msa0544740:intron 30.0%
GGAATGGTTTACTAATTTGA+TGG + chr4_1:33649946-33649965 Msa0544740:intron 30.0%
TCTTCATATCTAACTTTGCA+TGG + chr4_1:33650154-33650173 Msa0544740:intron 30.0%
TAAAGTTTGACTGAAATGAC+AGG + chr4_1:33650246-33650265 Msa0544740:intron 30.0%
TCTGCAACTATGTGAATATA+GGG - chr4_1:33650564-33650583 None:intergenic 30.0%
ATCTGCAACTATGTGAATAT+AGG - chr4_1:33650565-33650584 None:intergenic 30.0%
!! CTTATTTTCATAAGCTCTGT+AGG + chr4_1:33650822-33650841 Msa0544740:intron 30.0%
! TTTGGATTTGAAATCACATG+GGG - chr4_1:33651028-33651047 None:intergenic 30.0%
CCAAAGATGTAAAAAGTCAA+CGG + chr4_1:33651206-33651225 Msa0544740:exon 30.0%
AAAAAGTCAACGGAATATGA+AGG + chr4_1:33651216-33651235 Msa0544740:exon 30.0%
TAATAGCAGCTGCTATAATA+TGG + chr4_1:33651262-33651281 Msa0544740:three_prime_UTR 30.0%
AATAGCAGCTGCTATAATAT+GGG + chr4_1:33651263-33651282 Msa0544740:three_prime_UTR 30.0%
CAACAAAGAGAAAATCAAGA+GGG - chr4_1:33651321-33651340 None:intergenic 30.0%
TCAACAAAGAGAAAATCAAG+AGG - chr4_1:33651322-33651341 None:intergenic 30.0%
TAATTCAATAGAAGGTTGTG+GGG + chr4_1:33651434-33651453 Msa0544740:three_prime_UTR 30.0%
GTAAAATTACTTACCGAATC+GGG - chr4_1:33651499-33651518 None:intergenic 30.0%
TGTGAAAATAGAGAGACATA+AGG - chr4_1:33651587-33651606 None:intergenic 30.0%
!!! GTCTTTGTTTTGTTATCTTC+TGG + chr4_1:33651608-33651627 Msa0544740:three_prime_UTR 30.0%
ATCAATGCAGATTCAAAAAC+AGG - chr4_1:33651652-33651671 None:intergenic 30.0%
GTGTAAAAACCGAATTGAAT+CGG + chr4_1:33651683-33651702 Msa0544740:three_prime_UTR 30.0%
TTAAACCATCCGATTCAATT+CGG - chr4_1:33651695-33651714 None:intergenic 30.0%
TAACCAATTGAACCGTAAAT+TGG + chr4_1:33651712-33651731 Msa0544740:three_prime_UTR 30.0%
AAAAACTCTCCATCTCTTCT+TGG - chr4_1:33647068-33647087 None:intergenic 35.0%
CCAATAAATTTCCTTCCGAA+AGG - chr4_1:33647131-33647150 None:intergenic 35.0%
CCTTTCGGAAGGAAATTTAT+TGG + chr4_1:33647128-33647147 Msa0544740:CDS 35.0%
GAGGATAAAACAAGTTGTTC+GGG + chr4_1:33647339-33647358 Msa0544740:CDS 35.0%
GAGTAAAAGAGATGAATCTG+TGG + chr4_1:33647383-33647402 Msa0544740:CDS 35.0%
! CCACTTGCATCTTTTAACAA+TGG - chr4_1:33647417-33647436 None:intergenic 35.0%
CCATTGTTAAAAGATGCAAG+TGG + chr4_1:33647414-33647433 Msa0544740:CDS 35.0%
! TGAAGAGATTTAAGATTCCG+TGG - chr4_1:33647749-33647768 None:intergenic 35.0%
!! CAGATCCATTGATTCTAGTT+GGG - chr4_1:33647796-33647815 None:intergenic 35.0%
!! ACAGATCCATTGATTCTAGT+TGG - chr4_1:33647797-33647816 None:intergenic 35.0%
AATGGATCTGTATCCAACAA+AGG + chr4_1:33647806-33647825 Msa0544740:intron 35.0%
AAACGACAATGTTCTATGTC+GGG - chr4_1:33647840-33647859 None:intergenic 35.0%
CAAACGACAATGTTCTATGT+CGG - chr4_1:33647841-33647860 None:intergenic 35.0%
TGAGCATCAGTTATTGATAC+AGG + chr4_1:33647859-33647878 Msa0544740:intron 35.0%
GAGCATCAGTTATTGATACA+GGG + chr4_1:33647860-33647879 Msa0544740:intron 35.0%
GAAATGAAACATCGCAACAA+TGG + chr4_1:33647882-33647901 Msa0544740:CDS 35.0%
AATGATGTTACAAGACCTGA+TGG + chr4_1:33647935-33647954 Msa0544740:CDS 35.0%
ATTCCATGAATAACACCATC+AGG - chr4_1:33647953-33647972 None:intergenic 35.0%
TTGAAAGGCTTCTTATTCCT+AGG + chr4_1:33647972-33647991 Msa0544740:CDS 35.0%
TTCAAGATGACTTTAACCGT+AGG + chr4_1:33647999-33648018 Msa0544740:CDS 35.0%
GTTAAAAAGCTTCCATTACC+TGG - chr4_1:33648193-33648212 None:intergenic 35.0%
! TAATCAGATGTATTGGTGTC+TGG - chr4_1:33648288-33648307 None:intergenic 35.0%
CAAACACTGATACATTATGG+AGG + chr4_1:33648470-33648489 Msa0544740:intron 35.0%
TTATGGAGGTTATAACGAGA+TGG + chr4_1:33648484-33648503 Msa0544740:intron 35.0%
ATGAGTAGGTTAGTATCAGA+GGG + chr4_1:33648545-33648564 Msa0544740:CDS 35.0%
TTAGCCATAGCTTCATCATT+TGG - chr4_1:33648593-33648612 None:intergenic 35.0%
AGCTATGGCTAAGTTAACAA+CGG + chr4_1:33648601-33648620 Msa0544740:CDS 35.0%
!! TACTTTGAGATTGCCTCATA+AGG + chr4_1:33648742-33648761 Msa0544740:CDS 35.0%
GTTTGACCCGGATATTTATA+CGG + chr4_1:33648826-33648845 Msa0544740:CDS 35.0%
TCCACATGAAGAAAAAGAAG+AGG + chr4_1:33648889-33648908 Msa0544740:CDS 35.0%
! ACCTCTTCTTTTTCTTCATG+TGG - chr4_1:33648893-33648912 None:intergenic 35.0%
TTATAGGTGATCTCTTGAAG+TGG + chr4_1:33649557-33649576 Msa0544740:intron 35.0%
TATAGGTGATCTCTTGAAGT+GGG + chr4_1:33649558-33649577 Msa0544740:intron 35.0%
TCTTCTGATATACGGATGTT+AGG + chr4_1:33649670-33649689 Msa0544740:intron 35.0%
ACATGTCACTGAAAATTGCA+AGG + chr4_1:33649826-33649845 Msa0544740:intron 35.0%
TTTGTGCCTGTTATACTTGA+AGG - chr4_1:33649974-33649993 None:intergenic 35.0%
CAGCATGTCAAAGATACAAA+AGG - chr4_1:33650122-33650141 None:intergenic 35.0%
TGAAATGACAGGAAAATTGC+TGG + chr4_1:33650257-33650276 Msa0544740:intron 35.0%
CATTAATGAGCTAGCTATCA+TGG - chr4_1:33650382-33650401 None:intergenic 35.0%
TACTGAAAATGCTCCTTAGT+TGG + chr4_1:33650484-33650503 Msa0544740:intron 35.0%
TCATCTACTTTCACCAACTA+AGG - chr4_1:33650500-33650519 None:intergenic 35.0%
TGAAAGTAGATGATCAATGC+AGG + chr4_1:33650507-33650526 Msa0544740:intron 35.0%
!! TAACCTTTGGTCTTAGGAAT+TGG + chr4_1:33650535-33650554 Msa0544740:intron 35.0%
AATCCAATTCCTAAGACCAA+AGG - chr4_1:33650541-33650560 None:intergenic 35.0%
ATTCACATAGTTGCAGATCT+CGG + chr4_1:33650567-33650586 Msa0544740:intron 35.0%
! TTGGATTTGAAATCACATGG+GGG - chr4_1:33651027-33651046 None:intergenic 35.0%
!!! CCGTTGACTTTTTACATCTT+TGG - chr4_1:33651209-33651228 None:intergenic 35.0%
ACCATTCATTCAAGTAAAGC+TGG - chr4_1:33651242-33651261 None:intergenic 35.0%
GAAAATAGAGAGACATAAGG+AGG - chr4_1:33651584-33651603 None:intergenic 35.0%
AAAAACCGAATTGAATCGGA+TGG + chr4_1:33651687-33651706 Msa0544740:three_prime_UTR 35.0%
GTACCAATTTACGGTTCAAT+TGG - chr4_1:33651718-33651737 None:intergenic 35.0%
CTCTTCTTGGTTTCCATCTT+TGG - chr4_1:33647055-33647074 None:intergenic 40.0%
AGATGGAAACCAAGAAGAGA+TGG + chr4_1:33647056-33647075 Msa0544740:exon 40.0%
!! AGAGATGGAGAGTTTTTCGA+TGG + chr4_1:33647071-33647090 Msa0544740:exon 40.0%
!! GAGATGGAGAGTTTTTCGAT+GGG + chr4_1:33647072-33647091 Msa0544740:exon 40.0%
!! AGATGGAGAGTTTTTCGATG+GGG + chr4_1:33647073-33647092 Msa0544740:exon 40.0%
! GGGAGTACAACAATTACAAC+CGG + chr4_1:33647093-33647112 Msa0544740:CDS 40.0%
AACTTCGACGACTTCTTTGT+TGG + chr4_1:33647159-33647178 Msa0544740:CDS 40.0%
GGAATCAGAGATGAATTCCT+CGG + chr4_1:33647263-33647282 Msa0544740:CDS 40.0%
AAAACAAGTTGTTCGGGTCA+AGG + chr4_1:33647345-33647364 Msa0544740:CDS 40.0%
! TTGACTTTTCTCTTCCCTTG+AGG - chr4_1:33647474-33647493 None:intergenic 40.0%
TCAAGGGAAGAGAAAAGTCA+AGG + chr4_1:33647473-33647492 Msa0544740:intron 40.0%
CAAACACTAGAAGACACTGT+CGG + chr4_1:33647638-33647657 Msa0544740:intron 40.0%
!!! CGTTCTAGAGCTTGGTTTTT+TGG - chr4_1:33647689-33647708 None:intergenic 40.0%
AAACCTTTCTCTTAGAGCCA+CGG + chr4_1:33647729-33647748 Msa0544740:CDS 40.0%
TGAAACATCGCAACAATGGT+TGG + chr4_1:33647886-33647905 Msa0544740:CDS 40.0%
! TCGCAACAATGGTTGGTTAA+TGG + chr4_1:33647893-33647912 Msa0544740:CDS 40.0%
!! AGACCTGATGGTGTTATTCA+TGG + chr4_1:33647947-33647966 Msa0544740:CDS 40.0%
AAGTCATCTTGAACAGACCT+AGG - chr4_1:33647992-33648011 None:intergenic 40.0%
AAGATGACTTTAACCGTAGG+AGG + chr4_1:33648002-33648021 Msa0544740:CDS 40.0%
TAGAAACAAGACTCCTCCTA+CGG - chr4_1:33648018-33648037 None:intergenic 40.0%
ATTGCTGCAATTAAACCCGA+AGG + chr4_1:33648037-33648056 Msa0544740:CDS 40.0%
!! TTTTTCAACCGATGAGTCCT+CGG - chr4_1:33648079-33648098 None:intergenic 40.0%
TCAAAAATAGGAAGAGCAGG+CGG - chr4_1:33648130-33648149 None:intergenic 40.0%
GCATCAAAAATAGGAAGAGC+AGG - chr4_1:33648133-33648152 None:intergenic 40.0%
GGAGCCAATGCATCAAAAAT+AGG - chr4_1:33648142-33648161 None:intergenic 40.0%
!!! ATTTTTGATGCATTGGCTCC+TGG + chr4_1:33648142-33648161 Msa0544740:intron 40.0%
CATGTCAATTGTGTAGTGTC+TGG + chr4_1:33648347-33648366 Msa0544740:intron 40.0%
! ACAAATTAGTTTCGAGCACC+CGG - chr4_1:33648376-33648395 None:intergenic 40.0%
!!! CTAACTTGTTTTTCAGGACC+TGG + chr4_1:33648398-33648417 Msa0544740:intron 40.0%
GATGAGTAGGTTAGTATCAG+AGG + chr4_1:33648544-33648563 Msa0544740:CDS 40.0%
AGCACCAAATGATGAAGCTA+TGG + chr4_1:33648586-33648605 Msa0544740:CDS 40.0%
!! ATAATTTGTTCCGGTGAACC+CGG - chr4_1:33648641-33648660 None:intergenic 40.0%
CTCTCTTCAGTTTGATACTC+AGG - chr4_1:33648680-33648699 None:intergenic 40.0%
TGCTGTTAGAAGATTTGGGA+AGG + chr4_1:33648709-33648728 Msa0544740:intron 40.0%
TTAGAAGATTTGGGAAGGTG+AGG + chr4_1:33648714-33648733 Msa0544740:intron 40.0%
TCTTCAGCATCAACCTTATG+AGG - chr4_1:33648758-33648777 None:intergenic 40.0%
TTGATGCTGAAGAAGCTGAT+GGG + chr4_1:33648765-33648784 Msa0544740:CDS 40.0%
TTCCGCTTATTTGTTTGACC+CGG + chr4_1:33648814-33648833 Msa0544740:CDS 40.0%
ATCCGGGTCAAACAAATAAG+CGG - chr4_1:33648819-33648838 None:intergenic 40.0%
ACCCGGATATTTATACGGAT+GGG + chr4_1:33648831-33648850 Msa0544740:CDS 40.0%
TCCCATCCGTATAAATATCC+GGG - chr4_1:33648835-33648854 None:intergenic 40.0%
CTCCCATCCGTATAAATATC+CGG - chr4_1:33648836-33648855 None:intergenic 40.0%
ATTTCTGTGCAAGGGATTGA+TGG + chr4_1:33648857-33648876 Msa0544740:CDS 40.0%
TTTCTGTGCAAGGGATTGAT+GGG + chr4_1:33648858-33648877 Msa0544740:CDS 40.0%
! GCTTTTGGATGTGATTCTTG+TGG + chr4_1:33649143-33649162 Msa0544740:intron 40.0%
!! TGTGGTGTTTTGTTGAAGCT+TGG + chr4_1:33649161-33649180 Msa0544740:intron 40.0%
GTCTAGACTAAGTGTGTGTT+TGG + chr4_1:33649271-33649290 Msa0544740:intron 40.0%
TTCTATTCACTTTCTCGCGA+AGG - chr4_1:33649376-33649395 None:intergenic 40.0%
ATGGGACCTTCAAGTATAAC+AGG + chr4_1:33649965-33649984 Msa0544740:intron 40.0%
!! GCTTGCACAAAGATTTTGGT+GGG - chr4_1:33650046-33650065 None:intergenic 40.0%
! CAAGGCTTGCACAAAGATTT+TGG - chr4_1:33650050-33650069 None:intergenic 40.0%
CAGAGAATAGGGCAACTAAA+CGG + chr4_1:33650072-33650091 Msa0544740:intron 40.0%
GACAGGAAAATTGCTGGAAA+CGG + chr4_1:33650263-33650282 Msa0544740:intron 40.0%
! GAATCTAGAATGCTGTCCAA+AGG - chr4_1:33650307-33650326 None:intergenic 40.0%
TAATGAGCTAGCTATCATGG+AGG - chr4_1:33650379-33650398 None:intergenic 40.0%
AATGCAGGTTCTCTAACCTT+TGG + chr4_1:33650522-33650541 Msa0544740:intron 40.0%
! GTTCTCTAACCTTTGGTCTT+AGG + chr4_1:33650529-33650548 Msa0544740:intron 40.0%
GCTCTGTAGGATAGCTTATA+CGG + chr4_1:33650835-33650854 Msa0544740:intron 40.0%
! ATTTGAAATCACATGGGGGA+AGG - chr4_1:33651023-33651042 None:intergenic 40.0%
GCCAGCTTTACTTGAATGAA+TGG + chr4_1:33651238-33651257 Msa0544740:three_prime_UTR 40.0%
CAGCTGCTATAATATGGGTT+TGG + chr4_1:33651268-33651287 Msa0544740:three_prime_UTR 40.0%
AAACCTTTGTGCTCTCATCA+AGG - chr4_1:33651352-33651371 None:intergenic 40.0%
ATTACTTACCGAATCGGGAA+CGG - chr4_1:33651494-33651513 None:intergenic 40.0%
! TCTGCATTGATCTTGACTTG+TGG + chr4_1:33651661-33651680 Msa0544740:three_prime_UTR 40.0%
!! TCTTTGGTAGTGTTCCTCAG+TGG - chr4_1:33647039-33647058 None:intergenic 45.0%
CTGAGGAACACTACCAAAGA+TGG + chr4_1:33647039-33647058 Msa0544740:five_prime_UTR 45.0%
ACAATTACAACCGGCGACTT+CGG + chr4_1:33647102-33647121 Msa0544740:CDS 45.0%
TTTGTTGGCATCAACGTCGA+TGG + chr4_1:33647174-33647193 Msa0544740:CDS 45.0%
TCTGGATCCATCTCCAAATC+CGG - chr4_1:33647210-33647229 None:intergenic 45.0%
GAGAACTCAGCAAACATCTC+TGG - chr4_1:33647228-33647247 None:intergenic 45.0%
GCTGAGTTCTCCGTTAGTTA+CGG + chr4_1:33647237-33647256 Msa0544740:intron 45.0%
TGATTCCTCGCCGTAACTAA+CGG - chr4_1:33647250-33647269 None:intergenic 45.0%
TTCTTCTCTTCCGCTTTGCT+GGG - chr4_1:33647303-33647322 None:intergenic 45.0%
ATTCTTCTCTTCCGCTTTGC+TGG - chr4_1:33647304-33647323 None:intergenic 45.0%
!! CAAGATCTCGTTCTAGAGCT+TGG - chr4_1:33647697-33647716 None:intergenic 45.0%
!! ATTCCGTGGCTCTAAGAGAA+AGG - chr4_1:33647735-33647754 None:intergenic 45.0%
GATCTGTATCCAACAAAGGC+CGG + chr4_1:33647810-33647829 Msa0544740:intron 45.0%
! AATTAAACCCGAAGGTGCAC+CGG + chr4_1:33648045-33648064 Msa0544740:intron 45.0%
! ACGTCTTCCATCAGAAGTGT+CGG - chr4_1:33648221-33648240 None:intergenic 45.0%
! ATGTATTGGTGTCTGGTGTC+AGG - chr4_1:33648281-33648300 None:intergenic 45.0%
ATTGTGTAGTGTCTGGTGTC+CGG + chr4_1:33648354-33648373 Msa0544740:intron 45.0%
!!! ACTTGTTTTTCAGGACCTGG+TGG + chr4_1:33648401-33648420 Msa0544740:intron 45.0%
TGGAGGTTATAACGAGATGG+CGG + chr4_1:33648487-33648506 Msa0544740:intron 45.0%
!! TAACGAGATGGCGGATATTC+TGG + chr4_1:33648496-33648515 Msa0544740:CDS 45.0%
GAACTTAACGTCGTTAGCGA+CGG + chr4_1:33648520-33648539 Msa0544740:CDS 45.0%
GTTGATGCTGAAGAAGCTGA+TGG + chr4_1:33648764-33648783 Msa0544740:CDS 45.0%
! GCTGATGGGTCGGTTAAATT+CGG + chr4_1:33648779-33648798 Msa0544740:CDS 45.0%
! CTGATGGGTCGGTTAAATTC+GGG + chr4_1:33648780-33648799 Msa0544740:CDS 45.0%
GTTAAATTCGGGCATGGTGA+TGG + chr4_1:33648791-33648810 Msa0544740:CDS 45.0%
GACCCGGATATTTATACGGA+TGG + chr4_1:33648830-33648849 Msa0544740:CDS 45.0%
CGGATATTTATACGGATGGG+AGG + chr4_1:33648834-33648853 Msa0544740:CDS 45.0%
ATGGGAGGATTTCTGTGCAA+GGG + chr4_1:33648849-33648868 Msa0544740:CDS 45.0%
TTCTGTGCAAGGGATTGATG+GGG + chr4_1:33648859-33648878 Msa0544740:CDS 45.0%
ATAAGGCTGTGACCCAAGAA+CGG + chr4_1:33648918-33648937 Msa0544740:CDS 45.0%
!! GGTGTTTTGTTGAAGCTTGG+AGG + chr4_1:33649164-33649183 Msa0544740:intron 45.0%
! GGCTTGCACAAAGATTTTGG+TGG - chr4_1:33650047-33650066 None:intergenic 45.0%
CAAGCCTTGCACAGAGAATA+GGG + chr4_1:33650061-33650080 Msa0544740:intron 45.0%
GAATAGGGCAACTAAACGGT+TGG + chr4_1:33650076-33650095 Msa0544740:intron 45.0%
! TGCGTGTTTTCCATGGTTGT+AGG + chr4_1:33650689-33650708 Msa0544740:intron 45.0%
! GCGTGTTTTCCATGGTTGTA+GGG + chr4_1:33650690-33650709 Msa0544740:intron 45.0%
CATGGTTGTAGGGAATCTGA+GGG + chr4_1:33650700-33650719 Msa0544740:intron 45.0%
TAGAAGGTTGTGGGGTGAAA+AGG + chr4_1:33651442-33651461 Msa0544740:three_prime_UTR 45.0%
!! TTATTAATATATATGTAATT+AGG + chr4_1:33651388-33651407 Msa0544740:three_prime_UTR 5.0%
TGGAGACATCTTGCCGGATT+TGG + chr4_1:33647194-33647213 Msa0544740:CDS 50.0%
CATCTTGCCGGATTTGGAGA+TGG + chr4_1:33647200-33647219 Msa0544740:CDS 50.0%
GATGAATTCCTCGGCGTCAT+TGG + chr4_1:33647272-33647291 Msa0544740:CDS 50.0%
ATTGGAGAACCCCAGCAAAG+CGG + chr4_1:33647290-33647309 Msa0544740:CDS 50.0%
TCTTCTCTTCCGCTTTGCTG+GGG - chr4_1:33647302-33647321 None:intergenic 50.0%
AAGTTGTTCGGGTCAAGGCT+CGG + chr4_1:33647350-33647369 Msa0544740:CDS 50.0%
ATGTTCTATGTCGGGTCGAC+CGG - chr4_1:33647832-33647851 None:intergenic 50.0%
! AGGTTGATCCGAGGACTCAT+CGG + chr4_1:33648068-33648087 Msa0544740:intron 50.0%
AAGCTTCCATTACCTGGTGC+TGG - chr4_1:33648187-33648206 None:intergenic 50.0%
ACACTGACCGACACTTCTGA+TGG + chr4_1:33648211-33648230 Msa0544740:intron 50.0%
CTTCTGATGGAAGACGTGTC+TGG + chr4_1:33648224-33648243 Msa0544740:intron 50.0%
TTGTGTAGTGTCTGGTGTCC+GGG + chr4_1:33648355-33648374 Msa0544740:intron 50.0%
GGACCCCACCATCATTTCAA+CGG + chr4_1:33648422-33648441 Msa0544740:intron 50.0%
GACCCCACCATCATTTCAAC+GGG + chr4_1:33648423-33648442 Msa0544740:intron 50.0%
ACCCCACCATCATTTCAACG+GGG + chr4_1:33648424-33648443 Msa0544740:intron 50.0%
! TCCCCGTTGAAATGATGGTG+GGG - chr4_1:33648428-33648447 None:intergenic 50.0%
CTCCCCGTTGAAATGATGGT+GGG - chr4_1:33648429-33648448 None:intergenic 50.0%
AACGGACCAGTTGAGTGAAC+CGG + chr4_1:33648619-33648638 Msa0544740:CDS 50.0%
! TGCTGAAGAAGCTGATGGGT+CGG + chr4_1:33648769-33648788 Msa0544740:CDS 50.0%
GATGGGAGGATTTCTGTGCA+AGG + chr4_1:33648848-33648867 Msa0544740:CDS 50.0%
GGGTTTACCCTTCCGTTCTT+GGG - chr4_1:33648933-33648952 None:intergenic 50.0%
TTGCTTGGCCACAACCTTAG+CGG - chr4_1:33648954-33648973 None:intergenic 50.0%
GTTGTGGCCAAGCAAAGAAG+AGG + chr4_1:33648959-33648978 Msa0544740:intron 50.0%
CAACGCACCTCTTCTTTGCT+TGG - chr4_1:33648969-33648988 None:intergenic 50.0%
GCAAGCCTTGCACAGAGAAT+AGG + chr4_1:33650060-33650079 Msa0544740:intron 50.0%
GTTGCCCTATTCTCTGTGCA+AGG - chr4_1:33650068-33650087 None:intergenic 50.0%
AATTGCTGGAAACGGCTTGC+TGG + chr4_1:33650271-33650290 Msa0544740:CDS 50.0%
TGCTGGATGCTTGGAACCTT+TGG + chr4_1:33650288-33650307 Msa0544740:CDS 50.0%
GATCTTCATCCGAGATCCCT+TGG + chr4_1:33650665-33650684 Msa0544740:intron 50.0%
CATGGAAAACACGCAGCCAA+GGG - chr4_1:33650684-33650703 None:intergenic 50.0%
CCTCAGATTCCCTACAACCA+TGG - chr4_1:33650702-33650721 None:intergenic 50.0%
CCATGGTTGTAGGGAATCTG+AGG + chr4_1:33650699-33650718 Msa0544740:intron 50.0%
TGCTAATCACCACAACCACC+AGG - chr4_1:33650988-33651007 None:intergenic 50.0%
AATCACATGGGGGAAGGAGA+GGG - chr4_1:33651017-33651036 None:intergenic 50.0%
AAATCACATGGGGGAAGGAG+AGG - chr4_1:33651018-33651037 None:intergenic 50.0%
! GGTCCTTGATGAGAGCACAA+AGG + chr4_1:33651346-33651365 Msa0544740:three_prime_UTR 50.0%
GCGATAATCCGTTCCCGATT+CGG + chr4_1:33651483-33651502 Msa0544740:three_prime_UTR 50.0%
GACTTCGGTGACCTTTCGGA+AGG + chr4_1:33647117-33647136 Msa0544740:CDS 55.0%
CGTCGATGGAGACATCTTGC+CGG + chr4_1:33647188-33647207 Msa0544740:CDS 55.0%
GTTCTCCGTTAGTTACGGCG+AGG + chr4_1:33647242-33647261 Msa0544740:intron 55.0%
ATCAACCTCCGGTGCACCTT+CGG - chr4_1:33648056-33648075 None:intergenic 55.0%
TGAGTCCTCGGATCAACCTC+CGG - chr4_1:33648067-33648086 None:intergenic 55.0%
! ATTGGCTCCTGGACCTTCTC+TGG + chr4_1:33648153-33648172 Msa0544740:intron 55.0%
TGGAAGACGTGTCTGGTGTC+TGG + chr4_1:33648231-33648250 Msa0544740:intron 55.0%
!! AAATGATGGTGGGGTCCACC+AGG - chr4_1:33648419-33648438 None:intergenic 55.0%
CCTCCCCGTTGAAATGATGG+TGG - chr4_1:33648430-33648449 None:intergenic 55.0%
CCACCATCATTTCAACGGGG+AGG + chr4_1:33648427-33648446 Msa0544740:intron 55.0%
GTGCCTCCCCGTTGAAATGA+TGG - chr4_1:33648433-33648452 None:intergenic 55.0%
! TCATTTCAACGGGGAGGCAC+AGG + chr4_1:33648433-33648452 Msa0544740:intron 55.0%
CGTTAGCGACGGAGATGAGT+AGG + chr4_1:33648531-33648550 Msa0544740:CDS 55.0%
ACGGACCAGTTGAGTGAACC+GGG + chr4_1:33648620-33648639 Msa0544740:CDS 55.0%
GTGAACCCGGTTCACTCAAC+TGG - chr4_1:33648628-33648647 None:intergenic 55.0%
GTTGAGTGAACCGGGTTCAC+CGG + chr4_1:33648628-33648647 Msa0544740:CDS 55.0%
GGGTCGGTTAAATTCGGGCA+TGG + chr4_1:33648785-33648804 Msa0544740:CDS 55.0%
GCTGTGACCCAAGAACGGAA+GGG + chr4_1:33648923-33648942 Msa0544740:CDS 55.0%
CGGGTTTACCCTTCCGTTCT+TGG - chr4_1:33648934-33648953 None:intergenic 55.0%
ACGGAAGGGTAAACCCGCTA+AGG + chr4_1:33648937-33648956 Msa0544740:CDS 55.0%
GGGTAAACCCGCTAAGGTTG+TGG + chr4_1:33648943-33648962 Msa0544740:intron 55.0%
TGCTTGGCCACAACCTTAGC+GGG - chr4_1:33648953-33648972 None:intergenic 55.0%
GATCTCTTGAAGTGGGCCTG+TGG + chr4_1:33649565-33649584 Msa0544740:intron 55.0%
!! GAAACGGCTTGCTGGATGCT+TGG + chr4_1:33650279-33650298 Msa0544740:CDS 55.0%
AACACGCAGCCAAGGGATCT+CGG - chr4_1:33650677-33650696 None:intergenic 55.0%
CCATGGAAAACACGCAGCCA+AGG - chr4_1:33650685-33650704 None:intergenic 55.0%
! CCTTGGCTGCGTGTTTTCCA+TGG + chr4_1:33650682-33650701 Msa0544740:intron 55.0%
GGTTGTAGGGAATCTGAGGG+TGG + chr4_1:33650703-33650722 Msa0544740:intron 55.0%
CGAAAGGTCACCGAAGTCGC+CGG - chr4_1:33647115-33647134 None:intergenic 60.0%
CGGCGACTTCGGTGACCTTT+CGG + chr4_1:33647113-33647132 Msa0544740:CDS 60.0%
! TAAACCCGAAGGTGCACCGG+AGG + chr4_1:33648048-33648067 Msa0544740:intron 60.0%
TCAACCTCCGGTGCACCTTC+GGG - chr4_1:33648055-33648074 None:intergenic 60.0%
TCCTGGACCTTCTCTGGCAC+CGG + chr4_1:33648159-33648178 Msa0544740:intron 60.0%
GGCTGTGACCCAAGAACGGA+AGG + chr4_1:33648922-33648941 Msa0544740:CDS 60.0%
CCACCAGGTCCAAGGACTCT+GGG - chr4_1:33650973-33650992 None:intergenic 60.0%
ACCACCAGGTCCAAGGACTC+TGG - chr4_1:33650974-33650993 None:intergenic 60.0%
GTCCTTGGACCTGGTGGTTG+TGG + chr4_1:33650976-33650995 Msa0544740:intron 60.0%
CACCACAACCACCAGGTCCA+AGG - chr4_1:33650981-33651000 None:intergenic 60.0%
GGGGTTCTCCAATGACGCCG+AGG - chr4_1:33647283-33647302 None:intergenic 65.0%
TCGGGTCGACCGGCCTTTGT+TGG - chr4_1:33647822-33647841 None:intergenic 65.0%
! GTGCACCGGAGGTTGATCCG+AGG + chr4_1:33648059-33648078 Msa0544740:intron 65.0%
!! CCATTACCTGGTGCTGGCGC+CGG - chr4_1:33648181-33648200 None:intergenic 65.0%
! CAACGGGGAGGCACAGGTGA+AGG + chr4_1:33648439-33648458 Msa0544740:intron 65.0%
CCAAGGACTCTGGGCCCGTT+TGG - chr4_1:33650964-33650983 None:intergenic 65.0%
CCAAACGGGCCCAGAGTCCT+TGG + chr4_1:33650961-33650980 Msa0544740:intron 65.0%
CCCAGAGTCCTTGGACCTGG+TGG + chr4_1:33650970-33650989 Msa0544740:intron 65.0%
! CCAGGCTTCTGCGGTGGTGG+CGG - chr4_1:33648103-33648122 None:intergenic 70.0%
GAGCCAGGCTTCTGCGGTGG+TGG - chr4_1:33648106-33648125 None:intergenic 70.0%
GGAGAGCCAGGCTTCTGCGG+TGG - chr4_1:33648109-33648128 None:intergenic 70.0%
GGCGGAGAGCCAGGCTTCTG+CGG - chr4_1:33648112-33648131 None:intergenic 70.0%
GGAAGAGCAGGCGGAGAGCC+AGG - chr4_1:33648121-33648140 None:intergenic 70.0%
! GCCGGTGCCAGAGAAGGTCC+AGG - chr4_1:33648163-33648182 None:intergenic 70.0%
CCGGCGCCAGCACCAGGTAA+TGG + chr4_1:33648178-33648197 Msa0544740:intron 70.0%
GGGCCCAGAGTCCTTGGACC+TGG + chr4_1:33650967-33650986 Msa0544740:intron 70.0%
CCGCCACCACCGCAGAAGCC+TGG + chr4_1:33648100-33648119 Msa0544740:intron 75.0%
!! GCTGGCGCCGGTGCCAGAGA+AGG - chr4_1:33648169-33648188 None:intergenic 75.0%
!!! CTGGCACCGGCGCCAGCACC+AGG + chr4_1:33648172-33648191 Msa0544740:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 33647031 33651790 33647031 ID=Msa0544740;Name=Msa0544740
chr4_1 mRNA 33647031 33651790 33647031 ID=Msa0544740-mRNA-1;Parent=Msa0544740;Name=Msa0544740-mRNA-1;_AED=0.22;_eAED=0.22;_QI=44|0.14|0.25|0.75|0|0|8|573|419
chr4_1 exon 33647031 33647232 33647031 ID=Msa0544740-mRNA-1:exon:8596;Parent=Msa0544740-mRNA-1
chr4_1 exon 33647254 33647456 33647254 ID=Msa0544740-mRNA-1:exon:8597;Parent=Msa0544740-mRNA-1
chr4_1 exon 33647648 33647814 33647648 ID=Msa0544740-mRNA-1:exon:8598;Parent=Msa0544740-mRNA-1
chr4_1 exon 33647881 33648058 33647881 ID=Msa0544740-mRNA-1:exon:8599;Parent=Msa0544740-mRNA-1
chr4_1 exon 33648492 33648712 33648492 ID=Msa0544740-mRNA-1:exon:8600;Parent=Msa0544740-mRNA-1
chr4_1 exon 33648731 33648958 33648731 ID=Msa0544740-mRNA-1:exon:8601;Parent=Msa0544740-mRNA-1
chr4_1 exon 33650268 33650346 33650268 ID=Msa0544740-mRNA-1:exon:8602;Parent=Msa0544740-mRNA-1
chr4_1 exon 33651192 33651790 33651192 ID=Msa0544740-mRNA-1:exon:8603;Parent=Msa0544740-mRNA-1
chr4_1 five_prime_UTR 33647031 33647074 33647031 ID=Msa0544740-mRNA-1:five_prime_utr;Parent=Msa0544740-mRNA-1
chr4_1 CDS 33647075 33647232 33647075 ID=Msa0544740-mRNA-1:cds;Parent=Msa0544740-mRNA-1
chr4_1 CDS 33647254 33647456 33647254 ID=Msa0544740-mRNA-1:cds;Parent=Msa0544740-mRNA-1
chr4_1 CDS 33647648 33647814 33647648 ID=Msa0544740-mRNA-1:cds;Parent=Msa0544740-mRNA-1
chr4_1 CDS 33647881 33648058 33647881 ID=Msa0544740-mRNA-1:cds;Parent=Msa0544740-mRNA-1
chr4_1 CDS 33648492 33648712 33648492 ID=Msa0544740-mRNA-1:cds;Parent=Msa0544740-mRNA-1
chr4_1 CDS 33648731 33648958 33648731 ID=Msa0544740-mRNA-1:cds;Parent=Msa0544740-mRNA-1
chr4_1 CDS 33650268 33650346 33650268 ID=Msa0544740-mRNA-1:cds;Parent=Msa0544740-mRNA-1
chr4_1 CDS 33651192 33651217 33651192 ID=Msa0544740-mRNA-1:cds;Parent=Msa0544740-mRNA-1
chr4_1 three_prime_UTR 33651218 33651790 33651218 ID=Msa0544740-mRNA-1:three_prime_utr;Parent=Msa0544740-mRNA-1
Gene Sequence

>Msa0544740

ATGGAGAGTTTTTCGATGGGGAGTACAACAATTACAACCGGCGACTTCGGTGACCTTTCGGAAGGAAATTTATTGGAAAGCATCAACTTCGACGACTTCTTTGTTGGCATCAACGTCGATGGAGACATCTTGCCGGATTTGGAGATGGATCCAGAGATTTACGGCGAGGAATCAGAGATGAATTCCTCGGCGTCATTGGAGAACCCCAGCAAAGCGGAAGAGAAGAATTCAAAGAAAGATTATGAGGATAAAACAAGTTGTTCGGGTCAAGGCTCGGAAGAGATAGCGAGTAAAAGAGATGAATCTGTGGTTGTGAATCCATTGTTAAAAGATGCAAGTGGAAAAGGAAGAAAATCATCGAAAGACACTGTCGGTAAAAACAACATCACAATCTTCGCACCAAAAAACCAAGCTCTAGAACGAGATCTTGACCCAAATTTCAAAACCTTTCTCTTAGAGCCACGGAATCTTAAATCTCTTCAGACTTTGTTAATGTCACATATTATCCCAACTAGAATCAATGGATCTGGAAATGAAACATCGCAACAATGGTTGGTTAATGGAGCTAAGATTGTTCATCTGAATGATGTTACAAGACCTGATGGTGTTATTCATGGAATTGAAAGGCTTCTTATTCCTAGGTCTGTTCAAGATGACTTTAACCGTAGGAGGAGTCTTGTTTCTATTGCTGCAATTAAACCCGAAGGTTATAACGAGATGGCGGATATTCTGGTGAACTTAACGTCGTTAGCGACGGAGATGAGTAGGTTAGTATCAGAGGGTTATGTTTTAACAGTTCTAGCACCAAATGATGAAGCTATGGCTAAGTTAACAACGGACCAGTTGAGTGAACCGGGTTCACCGGAACAAATTATGTACTATCATTTGATTCCTGAGTATCAAACTGAAGAGAGTATGTATAATGCTGTGAGGTATGATACTTTGAGATTGCCTCATAAGGTTGATGCTGAAGAAGCTGATGGGTCGGTTAAATTCGGGCATGGTGATGGTTCCGCTTATTTGTTTGACCCGGATATTTATACGGATGGGAGGATTTCTGTGCAAGGGATTGATGGGGTTTTGTTTCCACATGAAGAAAAAGAAGAGGTTGTTGATAAGGCTGTGACCCAAGAACGGAAGGGTAAACCCGCTAAGGAAAATTGCTGGAAACGGCTTGCTGGATGCTTGGAACCTTTGGACAGCATTCTAGATTCAATTGTCAATAAACAAAAAAATGCACAGAAAATTCCAAAGATGTAA
Protein sequence

>Msa0544740

MESFSMGSTTITTGDFGDLSEGNLLESINFDDFFVGINVDGDILPDLEMDPEIYGEESEMNSSASLENPSKAEEKNSKKDYEDKTSCSGQGSEEIASKRDESVVVNPLLKDASGKGRKSSKDTVGKNNITIFAPKNQALERDLDPNFKTFLLEPRNLKSLQTLLMSHIIPTRINGSGNETSQQWLVNGAKIVHLNDVTRPDGVIHGIERLLIPRSVQDDFNRRRSLVSIAAIKPEGYNEMADILVNLTSLATEMSRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRYDTLRLPHKVDAEEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPHEEKEEVVDKAVTQERKGKPAKENCWKRLAGCLEPLDSILDSIVNKQKNAQKIPKM*