AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440960 MtrunA17_Chr4g0002361 99.045 419 4 0 1 419 1 419 0.0 857
Msa1440960 MtrunA17_Chr2g0298881 52.247 356 167 3 65 419 13 366 1.12e-137 398
Msa1440960 MtrunA17_Chr5g0399311 28.739 341 197 12 84 389 122 451 3.95e-27 113
Msa1440960 MtrunA17_Chr3g0143821 27.714 350 201 11 78 389 103 438 8.58e-27 112
Msa1440960 MtrunA17_Chr5g0424241 27.011 348 204 9 87 389 158 500 3.53e-26 110
Msa1440960 MtrunA17_Chr4g0042711 26.023 342 203 12 86 388 97 427 1.66e-24 105
Msa1440960 MtrunA17_Chr5g0417871 27.190 331 192 14 86 378 85 404 1.67e-24 105
Msa1440960 MtrunA17_Chr4g0056061 27.729 339 199 12 86 389 108 435 1.68e-24 105
Msa1440960 MtrunA17_Chr3g0129981 27.548 363 195 15 63 378 89 430 2.71e-24 105
Msa1440960 MtrunA17_Chr3g0132951 25.469 373 207 13 72 378 85 452 5.28e-24 103
Msa1440960 MtrunA17_Chr4g0061781 26.050 357 212 15 71 387 103 447 9.04e-24 103
Msa1440960 MtrunA17_Chr5g0426591 25.442 452 248 19 5 389 12 441 1.04e-23 103
Msa1440960 MtrunA17_Chr1g0160781 23.575 386 237 11 63 396 125 504 1.55e-23 102
Msa1440960 MtrunA17_Chr2g0307971 25.356 351 200 14 83 387 112 446 7.24e-22 97.8
Msa1440960 MtrunA17_Chr3g0123521 23.002 413 257 13 48 407 104 508 1.21e-21 97.1
Msa1440960 MtrunA17_Chr3g0087291 25.272 368 206 15 72 389 153 501 4.25e-21 95.5
Msa1440960 MtrunA17_Chr5g0412251 24.444 360 202 12 84 378 84 438 4.46e-21 95.1
Msa1440960 MtrunA17_Chr4g0003561 25.434 346 222 9 70 387 56 393 3.75e-20 92.0
Msa1440960 MtrunA17_Chr4g0043911 23.580 352 220 8 70 378 135 480 6.32e-20 92.0
Msa1440960 MtrunA17_Chr3g0077321 24.576 354 216 10 70 378 130 477 6.33e-20 92.0
Msa1440960 MtrunA17_Chr4g0010511 24.259 371 225 12 63 389 203 561 2.32e-19 90.5
Msa1440960 MtrunA17_Chr3g0132371 24.185 368 215 14 63 384 116 465 3.23e-19 89.7
Msa1440960 MtrunA17_Chr1g0204121 22.449 392 238 16 63 402 62 439 1.69e-17 84.3
Msa1440960 MtrunA17_Chr7g0220381 25.271 277 144 8 81 306 93 357 6.50e-16 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440960 AT3G21190.1 63.208 424 149 3 1 419 1 422 0.0 561
Msa1440960 AT1G51630.1 61.882 425 154 4 1 419 1 423 0.0 553
Msa1440960 AT1G38065.2 26.648 349 206 9 86 389 26 369 1.63e-27 114
Msa1440960 AT1G38065.1 26.648 349 206 9 86 389 36 379 1.88e-27 114
Msa1440960 AT1G38131.1 26.648 349 206 9 86 389 155 498 3.47e-27 114
Msa1440960 AT5G64600.1 27.586 406 231 14 26 389 60 444 7.49e-27 112
Msa1440960 AT1G20550.1 27.520 367 215 13 78 411 101 449 2.55e-25 108
Msa1440960 AT1G76270.1 28.529 340 200 12 83 389 103 432 7.38e-25 107
Msa1440960 AT4G38390.1 26.239 343 210 10 81 389 118 451 3.65e-23 102
Msa1440960 AT4G16650.2 28.446 341 198 11 84 389 120 449 5.33e-22 98.6
Msa1440960 AT4G16650.1 28.446 341 198 11 84 389 120 449 5.33e-22 98.6
Msa1440960 AT3G26370.1 23.430 414 256 12 48 408 112 517 8.42e-22 98.2
Msa1440960 AT3G02250.1 25.287 348 198 14 83 384 103 434 1.72e-20 94.0
Msa1440960 AT5G65470.1 23.177 384 223 13 63 378 60 439 3.04e-20 93.2
Msa1440960 AT1G35510.1 24.791 359 221 9 64 378 136 489 6.93e-20 92.4
Msa1440960 AT5G15740.1 24.629 337 206 13 87 384 107 434 8.31e-20 92.0
Msa1440960 AT2G03280.1 25.000 340 208 12 86 387 88 418 1.02e-19 91.7
Msa1440960 AT1G04910.1 24.074 378 229 14 75 413 81 439 1.53e-19 91.3
Msa1440960 AT5G63390.1 23.775 408 236 16 63 412 134 524 4.31e-19 90.1
Msa1440960 AT2G01480.2 21.564 422 274 10 8 378 69 484 5.62e-17 83.2
Msa1440960 AT2G01480.1 21.564 422 274 10 8 378 69 484 1.10e-16 82.4
Msa1440960 AT1G14970.1 22.198 464 296 14 8 412 70 527 3.41e-16 80.9
Msa1440960 AT1G14970.2 23.077 403 251 12 63 412 11 407 4.14e-16 80.5
Msa1440960 AT2G03280.2 23.433 367 207 13 86 387 88 445 7.25e-16 79.7
Msa1440960 AT2G37980.1 23.097 381 245 15 45 389 185 553 2.76e-14 75.1
Msa1440960 AT3G26370.2 24.138 232 157 6 48 263 112 340 5.75e-14 73.6
Msa1440960 AT5G01100.1 21.467 368 233 12 63 389 191 543 1.60e-13 72.8

Find 108 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAGGCTATTCACATATT+TGG 0.137783 tig0029168:-11640 Msa1440960:three_prime_UTR
GTTCCTCTAAAACAAGAAAA+TGG 0.179635 tig0029168:-15325 Msa1440960:exon
ATATTTGGCTTGTAAAATTA+TGG 0.193967 tig0029168:-11625 Msa1440960:three_prime_UTR
TTTCCCTTTGATCTATAAAT+TGG 0.210218 tig0029168:+12831 None:intergenic
CTCATTAAGAACAAGAATTA+TGG 0.238157 tig0029168:+11597 None:intergenic
GAAAGTCCAGGTAGGATATT+AGG 0.263198 tig0029168:-15466 Msa1440960:five_prime_UTR
TTCTGGTAAAACACAAATAT+TGG 0.269941 tig0029168:-11915 Msa1440960:CDS
CTTAGCAATGTATGGAAGTT+TGG 0.306231 tig0029168:-12730 Msa1440960:CDS
ATTCAGAATCTTTAGAATCT+AGG 0.306927 tig0029168:+12038 None:intergenic
TACAAGGATAATAAATTTCC+AGG 0.315137 tig0029168:-14157 Msa1440960:intron
TAATCTTCGGTAACCCGGTT+AGG 0.354107 tig0029168:+12873 None:intergenic
GACTTTCTCATGTTTATTGA+AGG 0.356575 tig0029168:+12786 None:intergenic
TCGACAAGATCATGTATTTC+CGG 0.357773 tig0029168:+12699 None:intergenic
ACACATGTAAGAAAGAATAT+AGG 0.360475 tig0029168:-14091 Msa1440960:CDS
TTACTTGAACAGAATCAAAA+TGG 0.369726 tig0029168:+15223 None:intergenic
CTGCTGTGAAGGTCCCTAAC+CGG 0.377281 tig0029168:-12887 Msa1440960:CDS
ATGCGAACGTAGCTGGTAAA+AGG 0.377684 tig0029168:-11943 Msa1440960:CDS
TCAATAAACATGAGAAAGTC+AGG 0.380362 tig0029168:-12783 Msa1440960:CDS
CACATGTAAGAAAGAATATA+GGG 0.382191 tig0029168:-14090 Msa1440960:CDS
TGATAGCCTTGATTCTCTTA+AGG 0.386325 tig0029168:-12457 Msa1440960:CDS
CATCATTATCATCATTTCCT+TGG 0.387233 tig0029168:+12580 None:intergenic
GTTGAGATGTTGAACAAGAA+AGG 0.397949 tig0029168:-12606 Msa1440960:CDS
GAGAAAGATTGGTATTGATA+AGG 0.398684 tig0029168:-12514 Msa1440960:CDS
AGATTCTAAAGATTCTGAAT+TGG 0.399183 tig0029168:-12035 Msa1440960:CDS
GATACTGCATTCATTGACTT+TGG 0.403790 tig0029168:-11564 Msa1440960:three_prime_UTR
TAAGAAAGAATATAGGGCTT+TGG 0.414895 tig0029168:-14084 Msa1440960:CDS
ATTGCATGCTTAGCAATGTA+TGG 0.415033 tig0029168:-12738 Msa1440960:CDS
AGATAAACATTCATCCCAAT+GGG 0.424741 tig0029168:-11520 Msa1440960:three_prime_UTR
TTCCTCTAAAACAAGAAAAT+GGG 0.425792 tig0029168:-15324 Msa1440960:exon
AATCTCTTGTGCATTGAAAC+AGG 0.427632 tig0029168:+12548 None:intergenic
GATTTGAGACAAGTAGTTGC+TGG 0.437086 tig0029168:-15297 Msa1440960:CDS
GGTTGGCTTCCTCTAATGTC+AGG 0.452126 tig0029168:+13164 None:intergenic
TTGAATGGTTTACCTGAGAT+AGG 0.452979 tig0029168:+13840 None:intergenic
CTATTGTATGCGAACGTAGC+TGG 0.454060 tig0029168:-11950 Msa1440960:CDS
CCGTGTTGGGTTAAGCCGTC+TGG 0.456324 tig0029168:-14037 Msa1440960:CDS
GCTGGTAAAAGGATCGGTTC+TGG 0.458320 tig0029168:-11932 Msa1440960:CDS
TACACTAAGTCAACCCCATT+GGG 0.462494 tig0029168:+11506 None:intergenic
CTTGTGATCCCTGACATTAG+AGG 0.462574 tig0029168:-13173 Msa1440960:CDS
AGCCGATGAATCTGAAATTA+CGG 0.462609 tig0029168:+11886 None:intergenic
TGGACCATTGGTTAATGAAA+AGG 0.468674 tig0029168:+13871 None:intergenic
TACAATAGACCCGAAATTGC+TGG 0.469638 tig0029168:+11965 None:intergenic
CAATTTATTTGACACAATCA+AGG 0.470225 tig0029168:-12485 Msa1440960:CDS
AACTTTGTCTTCTTATCCGC+CGG 0.478466 tig0029168:+12061 None:intergenic
TGACGAGTTAAAACCGTGTT+GGG 0.478923 tig0029168:-14050 Msa1440960:CDS
CGAACCAATTTATAGATCAA+AGG 0.484845 tig0029168:-12835 Msa1440960:CDS
GAACCAATTTATAGATCAAA+GGG 0.484926 tig0029168:-12834 Msa1440960:CDS
GTTGCATCATCTGTTGATCC+TGG 0.495630 tig0029168:+14139 None:intergenic
CTATGTAATCTTCGGTAACC+CGG 0.496129 tig0029168:+12868 None:intergenic
ACATGATCTTGTCGACTCAA+TGG 0.503901 tig0029168:-12691 Msa1440960:CDS
AGCCGTAATTTCAGATTCAT+CGG 0.504226 tig0029168:-11888 Msa1440960:CDS
TAGATAAACATTCATCCCAA+TGG 0.504319 tig0029168:-11521 Msa1440960:three_prime_UTR
GACATTAGAGGAAGCCAACC+TGG 0.505026 tig0029168:-13161 Msa1440960:CDS
AATCTTCGGTAACCCGGTTA+GGG 0.507255 tig0029168:+12874 None:intergenic
AGACGGTCAATTTATTGCTG+TGG 0.514073 tig0029168:-12637 Msa1440960:CDS
TGGAAGTTTGGAGTTGCAGC+CGG 0.514488 tig0029168:-12718 Msa1440960:CDS
AAAAGAAAAGAAGAAAGTCC+AGG 0.521014 tig0029168:-15478 None:intergenic
TTGTCGACTCAATGGTTGAA+AGG 0.530466 tig0029168:-12683 Msa1440960:CDS
AACCTATGAAAATGTAAAGA+TGG 0.530585 tig0029168:-14119 Msa1440960:CDS
GTAATTGTGGCTAGATATCT+CGG 0.530926 tig0029168:-13203 Msa1440960:CDS
TTCATGTCTCAGGAACTTTG+AGG 0.534152 tig0029168:-13003 Msa1440960:intron
AAAGAATATAGGGCTTTGGA+AGG 0.536631 tig0029168:-14080 Msa1440960:CDS
TGCTGTGAAGGTCCCTAACC+GGG 0.540265 tig0029168:-12886 Msa1440960:CDS
GTGTCGAGCTATGTAATCTT+CGG 0.540315 tig0029168:+12860 None:intergenic
ATCTGCAAACAAAAGACCTT+AGG 0.545962 tig0029168:+11739 None:intergenic
GATGAATCTGAAATTACGGC+TGG 0.551992 tig0029168:+11890 None:intergenic
TCCAGAGTACCACCTATCTC+AGG 0.558813 tig0029168:-13852 Msa1440960:intron
ATACACTAAGTCAACCCCAT+TGG 0.560052 tig0029168:+11505 None:intergenic
ACCTGAGATAGGTGGTACTC+TGG 0.562659 tig0029168:+13851 None:intergenic
CAAGGAAATGATGATAATGA+TGG 0.567082 tig0029168:-12579 Msa1440960:CDS
TAGGTGGTACTCTGGACCAT+TGG 0.568629 tig0029168:+13859 None:intergenic
ACAGGTCCTTAAGAGAATCA+AGG 0.568795 tig0029168:+12451 None:intergenic
GATAGCAGATGCAGTAATTG+TGG 0.569998 tig0029168:-13216 Msa1440960:CDS
CTGACGAGTTAAAACCGTGT+TGG 0.574512 tig0029168:-14051 Msa1440960:CDS
TTATTTGACACAATCAAGGT+GGG 0.575583 tig0029168:-12481 Msa1440960:CDS
GACGAAGTGGAGCAGACAGA+CGG 0.578720 tig0029168:-13902 Msa1440960:CDS
GTTGGCTTCCTCTAATGTCA+GGG 0.580467 tig0029168:+13165 None:intergenic
ACGAAGTGGAGCAGACAGAC+GGG 0.590735 tig0029168:-13901 Msa1440960:CDS
AACGTAGCTGGTAAAAGGAT+CGG 0.594479 tig0029168:-11938 Msa1440960:CDS
CATGAAAAGCATGGAAGGAG+TGG 0.595034 tig0029168:-12958 Msa1440960:CDS
TCGATGGTTGGCAGACGAAG+TGG 0.598053 tig0029168:-13915 Msa1440960:intron
GTGTTCATGAAAAGCATGGA+AGG 0.599368 tig0029168:-12963 Msa1440960:CDS
GTTCTTCCTAATATCCTACC+TGG 0.600567 tig0029168:+15460 None:intergenic
ATACATTGCTAAGCATGCAA+TGG 0.603322 tig0029168:+12740 None:intergenic
AGAACTAACCTCTTGTCACC+AGG 0.607111 tig0029168:+13143 None:intergenic
TTGAACAAGAAAGGTTGCCA+AGG 0.610391 tig0029168:-12597 Msa1440960:CDS
CTAACCTCTTGTCACCAGGT+TGG 0.610952 tig0029168:+13147 None:intergenic
AATTTAATATTACCTCCAGA+CGG 0.612585 tig0029168:+14022 None:intergenic
ATAGATCAAAGGGAAACGTA+AGG 0.616496 tig0029168:-12824 Msa1440960:CDS
TTTATTTGACACAATCAAGG+TGG 0.619794 tig0029168:-12482 Msa1440960:CDS
ATTTAACATGTATGTACACA+AGG 0.622676 tig0029168:-11656 Msa1440960:three_prime_UTR
GTTGCAGGAGTCAATCATGC+CGG 0.628375 tig0029168:-12080 Msa1440960:intron
AAGAATATAGGGCTTTGGAA+GGG 0.632512 tig0029168:-14079 Msa1440960:CDS
TAACAAACATAGTGAGAGTG+AGG 0.633154 tig0029168:+15271 None:intergenic
GAAAAGAAGAAAGTCCAGGT+AGG 0.640973 tig0029168:-15474 Msa1440960:five_prime_UTR
AATAACAAGAATATGCAAAG+TGG 0.644534 tig0029168:+11822 None:intergenic
ATCATTGTCAGTGAAAGTGT+CGG 0.644659 tig0029168:-15437 Msa1440960:five_prime_UTR
GAAGCCAACCTGGTGACAAG+AGG 0.647434 tig0029168:-13151 Msa1440960:intron
CAATAAACATGAGAAAGTCA+GGG 0.649727 tig0029168:-12782 Msa1440960:CDS
TGTTGGGTTAAGCCGTCTGG+AGG 0.656915 tig0029168:-14034 Msa1440960:intron
CATGGAAGGAGTGGTCAAAG+TGG 0.657662 tig0029168:-12949 Msa1440960:CDS
GTTTCCTAAAACTTACACGA+AGG 0.660480 tig0029168:-12430 Msa1440960:intron
TGACGTGTTCATGAAAAGCA+TGG 0.665989 tig0029168:-12967 Msa1440960:CDS
ACTTTAAGCCGAAAATCAGA+CGG 0.668948 tig0029168:-12654 Msa1440960:CDS
AATGGTTTACCTGAGATAGG+TGG 0.671281 tig0029168:+13843 None:intergenic
GCAGGAGTCAATCATGCCGG+CGG 0.677301 tig0029168:-12077 Msa1440960:intron
TGATTGTGTCAAATAAATTG+TGG 0.680581 tig0029168:+12488 None:intergenic
CCAGACGGCTTAACCCAACA+CGG 0.681147 tig0029168:+14037 None:intergenic
GATAAACATTCATCCCAATG+GGG 0.743943 tig0029168:-11519 Msa1440960:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTGACTTTTTATATAT+AGG - tig0029168:12139-12158 Msa1440960:intron 10.0%
!! TTTGGATAAAAATGAAAAAT+GGG + tig0029168:11709-11728 None:intergenic 15.0%
!! TTTGTTCATAACAAAAAAAA+TGG + tig0029168:11826-11845 None:intergenic 15.0%
!!! AACAAAGTTAGTTAATTTTA+GGG - tig0029168:11840-11859 Msa1440960:CDS 15.0%
!!! AAATGAATTTTAACTTTCAA+AGG - tig0029168:11897-11916 Msa1440960:CDS 15.0%
!!! GTCAATTATTTGTTTTATAT+AGG + tig0029168:12093-12112 None:intergenic 15.0%
!! CTTAGATTGATTAATATATT+CGG + tig0029168:12529-12548 None:intergenic 15.0%
!! AAGATAGATATTAGATAAAT+AGG - tig0029168:12546-12565 Msa1440960:CDS 15.0%
!! CTTTGGATAAAAATGAAAAA+TGG + tig0029168:11710-11729 None:intergenic 20.0%
!! AAAGTGAAAAATTGAAACTT+TGG + tig0029168:11727-11746 None:intergenic 20.0%
!! TTTCTATATGAATCTCTTAA+AGG - tig0029168:11757-11776 Msa1440960:three_prime_UTR 20.0%
!! TTCTATATGAATCTCTTAAA+GGG - tig0029168:11758-11777 Msa1440960:three_prime_UTR 20.0%
!!! GAACAAAGTTAGTTAATTTT+AGG - tig0029168:11839-11858 Msa1440960:CDS 20.0%
!!! ACAAAGTTAGTTAATTTTAG+GGG - tig0029168:11841-11860 Msa1440960:CDS 20.0%
!!! TTATTTGTTTTATATAGGAC+TGG + tig0029168:12088-12107 None:intergenic 20.0%
!!! AACAACAATCTATTTTTATC+GGG + tig0029168:12459-12478 None:intergenic 20.0%
!!! GAACAACAATCTATTTTTAT+CGG + tig0029168:12460-12479 None:intergenic 20.0%
!! AAGACTAATAAAAACAAATC+CGG + tig0029168:12665-12684 None:intergenic 20.0%
!!! ATTAATTCATATTTTGTCGA+TGG - tig0029168:12973-12992 Msa1440960:CDS 20.0%
!!! CTTCAAGTTTATATCAATTT+TGG + tig0029168:13279-13298 None:intergenic 20.0%
!! TAATAGATTCATATTGAAGT+GGG + tig0029168:13363-13382 None:intergenic 20.0%
!! TTAATAGATTCATATTGAAG+TGG + tig0029168:13364-13383 None:intergenic 20.0%
!! AAATTGTGTTAAATGTAAAG+TGG + tig0029168:13387-13406 None:intergenic 20.0%
!! CTTTACATTTAACACAATTT+AGG - tig0029168:13387-13406 Msa1440960:intron 20.0%
!! AAAGTAGAGAAAATAAAGAA+TGG + tig0029168:13614-13633 None:intergenic 20.0%
!!! ATATTTGGCTTGTAAAATTA+TGG - tig0029168:15279-15298 Msa1440960:CDS 20.0%
!!! TTCCTCTAAAACAAGAAAAT+GGG - tig0029168:11580-11599 Msa1440960:three_prime_UTR 25.0%
!! AATGGTCTCTTTTAATCATA+TGG + tig0029168:11666-11685 None:intergenic 25.0%
! TTACTTGAACAGAATCAAAA+TGG + tig0029168:11684-11703 None:intergenic 25.0%
!! GAGATATTAATTGTTTGTTG+TGG - tig0029168:11995-12014 Msa1440960:CDS 25.0%
! TCATTGAAATGATGATTTGA+AGG - tig0029168:12029-12048 Msa1440960:CDS 25.0%
!! TGACTTTTTATATATAGGAC+CGG - tig0029168:12144-12163 Msa1440960:intron 25.0%
!! ACAAGAAAATGTTTCTGATT+TGG - tig0029168:12298-12317 Msa1440960:intron 25.0%
!!! ACAACAATCTATTTTTATCG+GGG + tig0029168:12458-12477 None:intergenic 25.0%
! TACAAGGATAATAAATTTCC+AGG - tig0029168:12747-12766 Msa1440960:CDS 25.0%
! AACCTATGAAAATGTAAAGA+TGG - tig0029168:12785-12804 Msa1440960:CDS 25.0%
!! ATCCATCTTTACATTTTCAT+AGG + tig0029168:12790-12809 None:intergenic 25.0%
! ACACATGTAAGAAAGAATAT+AGG - tig0029168:12813-12832 Msa1440960:CDS 25.0%
! CACATGTAAGAAAGAATATA+GGG - tig0029168:12814-12833 Msa1440960:CDS 25.0%
! AATTTAATATTACCTCCAGA+CGG + tig0029168:12885-12904 None:intergenic 25.0%
!! ATCAAAATGAGGATTTTTGT+TGG - tig0029168:13103-13122 Msa1440960:intron 25.0%
! ATTAGTGATGTAAGATATTG+CGG - tig0029168:13127-13146 Msa1440960:intron 25.0%
!!! GGTGTCATTATTGTATATTT+AGG - tig0029168:13214-13233 Msa1440960:CDS 25.0%
! GTCATTATTGTATATTTAGG+TGG - tig0029168:13217-13236 Msa1440960:CDS 25.0%
!! CAAGTTTATATCAATTTTGG+AGG + tig0029168:13276-13295 None:intergenic 25.0%
! GCAAAAAAAGCTTCAAAATA+TGG + tig0029168:13302-13321 None:intergenic 25.0%
! TACATTTAACACAATTTAGG+TGG - tig0029168:13390-13409 Msa1440960:intron 25.0%
!!! TGAATGAATTGATTTTGTAG+AGG + tig0029168:13421-13440 None:intergenic 25.0%
!! AGTCTTTTCATAACTATCAT+TGG + tig0029168:13506-13525 None:intergenic 25.0%
!! CAAATTTTACAATACTGCAT+TGG + tig0029168:13582-13601 None:intergenic 25.0%
!! TTTATACACCGAATCTTTTA+TGG + tig0029168:13789-13808 None:intergenic 25.0%
!! TTTTGCTTATATTTCGTTCT+GGG - tig0029168:13844-13863 Msa1440960:intron 25.0%
!!! TTTTTAGTTGTTACATGAGA+AGG + tig0029168:13992-14011 None:intergenic 25.0%
! GAACCAATTTATAGATCAAA+GGG - tig0029168:14070-14089 Msa1440960:CDS 25.0%
! TTTCCCTTTGATCTATAAAT+TGG + tig0029168:14076-14095 None:intergenic 25.0%
! TGATTGTGTCAAATAAATTG+TGG + tig0029168:14419-14438 None:intergenic 25.0%
! CAATTTATTTGACACAATCA+AGG - tig0029168:14419-14438 Msa1440960:intron 25.0%
!! TAGTAAATTTGCTTACTTTC+TGG - tig0029168:14655-14674 Msa1440960:intron 25.0%
!!! ATTCAGAATCTTTAGAATCT+AGG + tig0029168:14869-14888 None:intergenic 25.0%
!! AGATTCTAAAGATTCTGAAT+TGG - tig0029168:14869-14888 Msa1440960:intron 25.0%
! TTCTGGTAAAACACAAATAT+TGG - tig0029168:14989-15008 Msa1440960:intron 25.0%
! AATAACAAGAATATGCAAAG+TGG + tig0029168:15085-15104 None:intergenic 25.0%
!!! TCAAGAGTTACAGTTTTTTT+AGG - tig0029168:15141-15160 Msa1440960:intron 25.0%
!!! CAAGAGTTACAGTTTTTTTA+GGG - tig0029168:15142-15161 Msa1440960:intron 25.0%
! ATTTAACATGTATGTACACA+AGG - tig0029168:15248-15267 Msa1440960:CDS 25.0%
! CTCATTAAGAACAAGAATTA+TGG + tig0029168:15310-15329 None:intergenic 25.0%
AGAAGAAGAAAAAGAAGAGA+AGG + tig0029168:11551-11570 None:intergenic 30.0%
!! GTTCCTCTAAAACAAGAAAA+TGG - tig0029168:11579-11598 Msa1440960:three_prime_UTR 30.0%
!!! AACCCATTTTCTTGTTTTAG+AGG + tig0029168:11585-11604 None:intergenic 30.0%
!! AGATCCTTAGTTTTTAGACT+AGG - tig0029168:11973-11992 Msa1440960:CDS 30.0%
ATCTCCTAGTCTAAAAACTA+AGG + tig0029168:11980-11999 None:intergenic 30.0%
!! TTGTTTTATATAGGACTGGA+GGG + tig0029168:12084-12103 None:intergenic 30.0%
!!! TTTGTTTTATATAGGACTGG+AGG + tig0029168:12085-12104 None:intergenic 30.0%
! TTTTTATATATAGGACCGGA+GGG - tig0029168:12148-12167 Msa1440960:intron 30.0%
!!! GCTCTATGTCTGAATTTTTT+TGG - tig0029168:12275-12294 Msa1440960:intron 30.0%
! TTTCTCATCGTATTTTCTCT+CGG - tig0029168:12604-12623 Msa1440960:CDS 30.0%
!!! CTCTTTGTTTTTGCTTTACA+AGG - tig0029168:12731-12750 Msa1440960:CDS 30.0%
TAAGAAAGAATATAGGGCTT+TGG - tig0029168:12820-12839 Msa1440960:CDS 30.0%
! TTAAGTTTTGCAACTTTTCG+AGG - tig0029168:12905-12924 Msa1440960:CDS 30.0%
AAATACAATCCAAACGCATA+TGG + tig0029168:12934-12953 None:intergenic 30.0%
! ATTCATATTTTGTCGATGGT+TGG - tig0029168:12977-12996 Msa1440960:CDS 30.0%
! GTTACCTTTTCATTAACCAA+TGG - tig0029168:13029-13048 Msa1440960:intron 30.0%
! GTGATTGACTTATCAAAATG+AGG - tig0029168:13092-13111 Msa1440960:intron 30.0%
CATCTAAGGGAAAATATCTT+TGG + tig0029168:13167-13186 None:intergenic 30.0%
AGAAGAAGGAAATCATCTAA+GGG + tig0029168:13180-13199 None:intergenic 30.0%
! AATAATGACACCGTTTCTTT+TGG + tig0029168:13206-13225 None:intergenic 30.0%
TGTATATTTAGGTGGATGTT+TGG - tig0029168:13225-13244 Msa1440960:intron 30.0%
! TGGGTTGAACAATTAATTTG+AGG + tig0029168:13344-13363 None:intergenic 30.0%
!!! TAAGTTTGTGTTTGGTTTTG+CGG + tig0029168:13460-13479 None:intergenic 30.0%
ACTACTACTAAGTTTGTGTT+TGG + tig0029168:13468-13487 None:intergenic 30.0%
! AGTTCTGACCATAAAAGATT+CGG - tig0029168:13778-13797 Msa1440960:intron 30.0%
CACATTCACGATCAATAATT+TGG - tig0029168:13816-13835 Msa1440960:intron 30.0%
! GTTTTGCTTATATTTCGTTC+TGG - tig0029168:13843-13862 Msa1440960:intron 30.0%
TTTGCTTATATTTCGTTCTG+GGG - tig0029168:13845-13864 Msa1440960:intron 30.0%
CCTGAGACATGAATTATATT+AGG + tig0029168:13894-13913 None:intergenic 30.0%
CCTAATATAATTCATGTCTC+AGG - tig0029168:13891-13910 Msa1440960:CDS 30.0%
TAAAAAAATTGCTGCTGTGA+AGG - tig0029168:14006-14025 Msa1440960:intron 30.0%
CGAACCAATTTATAGATCAA+AGG - tig0029168:14069-14088 Msa1440960:CDS 30.0%
GACTTTCTCATGTTTATTGA+AGG + tig0029168:14121-14140 None:intergenic 30.0%
TCAATAAACATGAGAAAGTC+AGG - tig0029168:14121-14140 Msa1440960:CDS 30.0%
CAATAAACATGAGAAAGTCA+GGG - tig0029168:14122-14141 Msa1440960:CDS 30.0%
! TAAATTGACCGTCTGATTTT+CGG + tig0029168:14261-14280 None:intergenic 30.0%
CATCATTATCATCATTTCCT+TGG + tig0029168:14327-14346 None:intergenic 30.0%
! CAAGGAAATGATGATAATGA+TGG - tig0029168:14325-14344 Msa1440960:intron 30.0%
!! GAGAAAGATTGGTATTGATA+AGG - tig0029168:14390-14409 Msa1440960:intron 30.0%
TTTATTTGACACAATCAAGG+TGG - tig0029168:14422-14441 Msa1440960:intron 30.0%
TTATTTGACACAATCAAGGT+GGG - tig0029168:14423-14442 Msa1440960:intron 30.0%
TTTCCTCTTAAAAATGTTGC+AGG - tig0029168:14809-14828 Msa1440960:intron 30.0%
!! TGTTTTTGTACCAGCAATTT+CGG - tig0029168:14929-14948 Msa1440960:intron 30.0%
! GTTTTTCTTGGAGATATAAG+GGG + tig0029168:15063-15082 None:intergenic 30.0%
! GGTTTTTCTTGGAGATATAA+GGG + tig0029168:15064-15083 None:intergenic 30.0%
! TGGTTTTTCTTGGAGATATA+AGG + tig0029168:15065-15084 None:intergenic 30.0%
! ATATGCAAAGTGGTTTTTCT+TGG + tig0029168:15075-15094 None:intergenic 30.0%
TAGATAAACATTCATCCCAA+TGG - tig0029168:15383-15402 Msa1440960:five_prime_UTR 30.0%
AGATAAACATTCATCCCAAT+GGG - tig0029168:15384-15403 Msa1440960:five_prime_UTR 30.0%
! ATCATTGTCAGTGAAAGTGT+CGG - tig0029168:11467-11486 Msa1440960:three_prime_UTR 35.0%
TAACAAACATAGTGAGAGTG+AGG + tig0029168:11636-11655 None:intergenic 35.0%
! CTTTTTATATATAGGACCGG+AGG - tig0029168:12147-12166 Msa1440960:intron 35.0%
ATTTGGACAGTGATACTGAT+AGG - tig0029168:12177-12196 Msa1440960:intron 35.0%
CAACAACTATACTAGAGTCT+AGG + tig0029168:12211-12230 None:intergenic 35.0%
!!! AATCTATTTTTATCGGGGAG+GGG + tig0029168:12453-12472 None:intergenic 35.0%
!!! CAATCTATTTTTATCGGGGA+GGG + tig0029168:12454-12473 None:intergenic 35.0%
!!! ACAATCTATTTTTATCGGGG+AGG + tig0029168:12455-12474 None:intergenic 35.0%
! AAACGGTGTTTTTCGTTCAA+AGG + tig0029168:12487-12506 None:intergenic 35.0%
!!! ACACCGTTTTAATTGAACCA+TGG - tig0029168:12498-12517 Msa1440960:CDS 35.0%
GCTCCATGGTTCAATTAAAA+CGG + tig0029168:12504-12523 None:intergenic 35.0%
!! AAAGAATATAGGGCTTTGGA+AGG - tig0029168:12824-12843 Msa1440960:CDS 35.0%
!! AAGAATATAGGGCTTTGGAA+GGG - tig0029168:12825-12844 Msa1440960:CDS 35.0%
! TGGACCATTGGTTAATGAAA+AGG + tig0029168:13036-13055 None:intergenic 35.0%
TTGAATGGTTTACCTGAGAT+AGG + tig0029168:13067-13086 None:intergenic 35.0%
AGTCAATCACAACGATTGAA+TGG + tig0029168:13082-13101 None:intergenic 35.0%
GAGAAGAAGGAAATCATCTA+AGG + tig0029168:13181-13200 None:intergenic 35.0%
TTCTTCTCCACCAAAAGAAA+CGG - tig0029168:13193-13212 Msa1440960:CDS 35.0%
!! TACAATACTGCATTGGCTTA+AGG + tig0029168:13575-13594 None:intergenic 35.0%
AACAGGGAAATGGAAAATGA+AGG + tig0029168:13637-13656 None:intergenic 35.0%
TATCTGGACATGAAGCATAT+TGG + tig0029168:13672-13691 None:intergenic 35.0%
GTAATTGTGGCTAGATATCT+CGG - tig0029168:13701-13720 Msa1440960:intron 35.0%
TTGCTTATATTTCGTTCTGG+GGG - tig0029168:13846-13865 Msa1440960:intron 35.0%
ATAGATCAAAGGGAAACGTA+AGG - tig0029168:14080-14099 Msa1440960:CDS 35.0%
ATGAGAAAGTCAGGGAAAAA+AGG - tig0029168:14130-14149 Msa1440960:CDS 35.0%
ATACATTGCTAAGCATGCAA+TGG + tig0029168:14167-14186 None:intergenic 35.0%
ATTGCATGCTTAGCAATGTA+TGG - tig0029168:14166-14185 Msa1440960:intron 35.0%
CTTAGCAATGTATGGAAGTT+TGG - tig0029168:14174-14193 Msa1440960:intron 35.0%
TCGACAAGATCATGTATTTC+CGG + tig0029168:14208-14227 None:intergenic 35.0%
ACTTTAAGCCGAAAATCAGA+CGG - tig0029168:14250-14269 Msa1440960:intron 35.0%
GTTGAGATGTTGAACAAGAA+AGG - tig0029168:14298-14317 Msa1440960:intron 35.0%
AATCTCTTGTGCATTGAAAC+AGG + tig0029168:14359-14378 None:intergenic 35.0%
!! GCAGTGTTTTTGAGAAAGAT+TGG - tig0029168:14379-14398 Msa1440960:intron 35.0%
! TGATAGCCTTGATTCTCTTA+AGG - tig0029168:14447-14466 Msa1440960:intron 35.0%
!!! TCGTGTAAGTTTTAGGAAAC+AGG + tig0029168:14474-14493 None:intergenic 35.0%
GTTTCCTAAAACTTACACGA+AGG - tig0029168:14474-14493 Msa1440960:intron 35.0%
!! GATTTGCTAACTGTGTGAAT+GGG + tig0029168:14593-14612 None:intergenic 35.0%
GACTATTCAAATGTGTGTGT+GGG + tig0029168:14752-14771 None:intergenic 35.0%
AGACTATTCAAATGTGTGTG+TGG + tig0029168:14753-14772 None:intergenic 35.0%
!! ACTCCTGCAACATTTTTAAG+AGG + tig0029168:14815-14834 None:intergenic 35.0%
TGGTACAAAAACATCACTCT+CGG + tig0029168:14922-14941 None:intergenic 35.0%
! GTTTTTGTACCAGCAATTTC+GGG - tig0029168:14930-14949 Msa1440960:intron 35.0%
AGCCGTAATTTCAGATTCAT+CGG - tig0029168:15016-15035 Msa1440960:intron 35.0%
! AGCCGATGAATCTGAAATTA+CGG + tig0029168:15021-15040 None:intergenic 35.0%
!!! TACAGTTTTTTTAGGGCCTA+AGG - tig0029168:15149-15168 Msa1440960:intron 35.0%
ATCTGCAAACAAAAGACCTT+AGG + tig0029168:15168-15187 None:intergenic 35.0%
CACAAGGCTATTCACATATT+TGG - tig0029168:15264-15283 Msa1440960:CDS 35.0%
!! GATACTGCATTCATTGACTT+TGG - tig0029168:15340-15359 Msa1440960:five_prime_UTR 35.0%
GATAAACATTCATCCCAATG+GGG - tig0029168:15385-15404 Msa1440960:five_prime_UTR 35.0%
GAAAGTCCAGGTAGGATATT+AGG - tig0029168:11438-11457 Msa1440960:three_prime_UTR 40.0%
GTTCTTCCTAATATCCTACC+TGG + tig0029168:11447-11466 None:intergenic 40.0%
! GATTTGAGACAAGTAGTTGC+TGG - tig0029168:11607-11626 Msa1440960:three_prime_UTR 40.0%
TGTCCAAATTATACTCCCTC+CGG + tig0029168:12166-12185 None:intergenic 40.0%
!! GGGGAAATTTGTTAGTAGCA+GGG + tig0029168:12434-12453 None:intergenic 40.0%
!! AGGGGAAATTTGTTAGTAGC+AGG + tig0029168:12435-12454 None:intergenic 40.0%
TAATATATTCGGCAGCTCCA+TGG + tig0029168:12518-12537 None:intergenic 40.0%
! ATGCAAGTGCTTTTCTGATC+CGG - tig0029168:12643-12662 Msa1440960:CDS 40.0%
TGACGAGTTAAAACCGTGTT+GGG - tig0029168:12854-12873 Msa1440960:CDS 40.0%
AATGGTTTACCTGAGATAGG+TGG + tig0029168:13064-13083 None:intergenic 40.0%
! GTTTCTTTTGGTGGAGAAGA+AGG + tig0029168:13194-13213 None:intergenic 40.0%
! AATGACACCGTTTCTTTTGG+TGG + tig0029168:13203-13222 None:intergenic 40.0%
ACGAAAGAAGAACAGGGAAA+TGG + tig0029168:13647-13666 None:intergenic 40.0%
!! TTGGTGACGAAAGAAGAACA+GGG + tig0029168:13653-13672 None:intergenic 40.0%
!! ATTGGTGACGAAAGAAGAAC+AGG + tig0029168:13654-13673 None:intergenic 40.0%
CAATTACTGCATCTGCTATC+TGG + tig0029168:13688-13707 None:intergenic 40.0%
GATAGCAGATGCAGTAATTG+TGG - tig0029168:13688-13707 Msa1440960:intron 40.0%
! TGCTTATATTTCGTTCTGGG+GGG - tig0029168:13847-13866 Msa1440960:intron 40.0%
TTCATGTCTCAGGAACTTTG+AGG - tig0029168:13901-13920 Msa1440960:CDS 40.0%
TGACGTGTTCATGAAAAGCA+TGG - tig0029168:13937-13956 Msa1440960:intron 40.0%
! GTGTTCATGAAAAGCATGGA+AGG - tig0029168:13941-13960 Msa1440960:intron 40.0%
CTATGTAATCTTCGGTAACC+CGG + tig0029168:14039-14058 None:intergenic 40.0%
GTGTCGAGCTATGTAATCTT+CGG + tig0029168:14047-14066 None:intergenic 40.0%
!! ACATGATCTTGTCGACTCAA+TGG - tig0029168:14213-14232 Msa1440960:intron 40.0%
!! TTGTCGACTCAATGGTTGAA+AGG - tig0029168:14221-14240 Msa1440960:intron 40.0%
AGACGGTCAATTTATTGCTG+TGG - tig0029168:14267-14286 Msa1440960:intron 40.0%
TTGAACAAGAAAGGTTGCCA+AGG - tig0029168:14307-14326 Msa1440960:intron 40.0%
ACAGGTCCTTAAGAGAATCA+AGG + tig0029168:14456-14475 None:intergenic 40.0%
! CTCACCTTCGTGTAAGTTTT+AGG + tig0029168:14481-14500 None:intergenic 40.0%
!! CGATTTGCTAACTGTGTGAA+TGG + tig0029168:14594-14613 None:intergenic 40.0%
TCACACAGTTAGCAAATCGA+TGG - tig0029168:14595-14614 Msa1440960:intron 40.0%
GTCGTAGGATTGAGATAAGA+CGG - tig0029168:14617-14636 Msa1440960:intron 40.0%
AACTTTGTCTTCTTATCCGC+CGG + tig0029168:14846-14865 None:intergenic 40.0%
TACAATAGACCCGAAATTGC+TGG + tig0029168:14942-14961 None:intergenic 40.0%
AACGTAGCTGGTAAAAGGAT+CGG - tig0029168:14966-14985 Msa1440960:intron 40.0%
! GATGAATCTGAAATTACGGC+TGG + tig0029168:15017-15036 None:intergenic 40.0%
TACACTAAGTCAACCCCATT+GGG + tig0029168:15401-15420 None:intergenic 40.0%
ATACACTAAGTCAACCCCAT+TGG + tig0029168:15402-15421 None:intergenic 40.0%
ATACCACTGAGCTACACCTT+CGG + tig0029168:12378-12397 None:intergenic 45.0%
GTAGCTCAGTGGTATCAGTT+TGG - tig0029168:12383-12402 Msa1440960:intron 45.0%
GTTGCATCATCTGTTGATCC+TGG + tig0029168:12768-12787 None:intergenic 45.0%
CTGACGAGTTAAAACCGTGT+TGG - tig0029168:12853-12872 Msa1440960:CDS 45.0%
CTTGTGATCCCTGACATTAG+AGG - tig0029168:13731-13750 Msa1440960:intron 45.0%
! GTTGGCTTCCTCTAATGTCA+GGG + tig0029168:13742-13761 None:intergenic 45.0%
AGAACTAACCTCTTGTCACC+AGG + tig0029168:13764-13783 None:intergenic 45.0%
!! GCTTATATTTCGTTCTGGGG+GGG - tig0029168:13848-13867 Msa1440960:intron 45.0%
CTGGGGGGGAATATAATTCA+TGG - tig0029168:13862-13881 Msa1440960:CDS 45.0%
! CATGAAAAGCATGGAAGGAG+TGG - tig0029168:13946-13965 Msa1440960:intron 45.0%
AATCTTCGGTAACCCGGTTA+GGG + tig0029168:14033-14052 None:intergenic 45.0%
TAATCTTCGGTAACCCGGTT+AGG + tig0029168:14034-14053 None:intergenic 45.0%
ATGAGCACACACACACACAT+GGG - tig0029168:14540-14559 Msa1440960:intron 45.0%
TGCTAACTGTGTGAATGGGT+GGG + tig0029168:14589-14608 None:intergenic 45.0%
TTGCTAACTGTGTGAATGGG+TGG + tig0029168:14590-14609 None:intergenic 45.0%
GTTAGCAAATCGATGGTCGT+AGG - tig0029168:14602-14621 Msa1440960:intron 45.0%
GATCGTTGGATGAGATCAGA+CGG + tig0029168:14682-14701 None:intergenic 45.0%
GTCAGCAGATTAGTGATCGT+TGG + tig0029168:14696-14715 None:intergenic 45.0%
ACGATCACTAATCTGCTGAC+TGG - tig0029168:14696-14715 Msa1440960:intron 45.0%
TGGTGTGAGTTTGTGATTGC+AGG - tig0029168:14716-14735 Msa1440960:intron 45.0%
CTATTGTATGCGAACGTAGC+TGG - tig0029168:14954-14973 Msa1440960:intron 45.0%
ATGCGAACGTAGCTGGTAAA+AGG - tig0029168:14961-14980 Msa1440960:intron 45.0%
!! AAAAAAAAAAAAAAACTTAT+AGG + tig0029168:15452-15471 None:intergenic 5.0%
! GGACCGGAGGGAGTATAATT+TGG - tig0029168:12160-12179 Msa1440960:intron 50.0%
TACCACTGAGCTACACCTTC+GGG + tig0029168:12377-12396 None:intergenic 50.0%
! TTTGGACACCGATTGAGTCC+AGG - tig0029168:12401-12420 Msa1440960:intron 50.0%
! TTGGACACCGATTGAGTCCA+GGG - tig0029168:12402-12421 Msa1440960:intron 50.0%
GATCGAACCCTGGACTCAAT+CGG + tig0029168:12412-12431 None:intergenic 50.0%
TCGAGGAAGCCATATGCGTT+TGG - tig0029168:12922-12941 Msa1440960:CDS 50.0%
TAGGTGGTACTCTGGACCAT+TGG + tig0029168:13048-13067 None:intergenic 50.0%
! TCCAGAGTACCACCTATCTC+AGG - tig0029168:13052-13071 Msa1440960:intron 50.0%
ACCTGAGATAGGTGGTACTC+TGG + tig0029168:13056-13075 None:intergenic 50.0%
!! GGTTGGCTTCCTCTAATGTC+AGG + tig0029168:13743-13762 None:intergenic 50.0%
GACATTAGAGGAAGCCAACC+TGG - tig0029168:13743-13762 Msa1440960:intron 50.0%
CTAACCTCTTGTCACCAGGT+TGG + tig0029168:13760-13779 None:intergenic 50.0%
CATGGAAGGAGTGGTCAAAG+TGG - tig0029168:13955-13974 Msa1440960:intron 50.0%
! TGGAAGTTTGGAGTTGCAGC+CGG - tig0029168:14186-14205 Msa1440960:intron 50.0%
CATGAGCACACACACACACA+TGG - tig0029168:14539-14558 Msa1440960:intron 50.0%
CACACACACACACATGGGTT+TGG - tig0029168:14545-14564 Msa1440960:intron 50.0%
ATGGGTGGGATTGTAACTGC+AGG + tig0029168:14575-14594 None:intergenic 50.0%
GTTGCAGGAGTCAATCATGC+CGG - tig0029168:14824-14843 Msa1440960:intron 50.0%
! GCTGGTAAAAGGATCGGTTC+TGG - tig0029168:14972-14991 Msa1440960:intron 50.0%
GTTTGTCCTTGTGTCCCCGA+AGG - tig0029168:12359-12378 Msa1440960:intron 55.0%
ACCACTGAGCTACACCTTCG+GGG + tig0029168:12376-12395 None:intergenic 55.0%
TAGTAGCAGGGATCGAACCC+TGG + tig0029168:12422-12441 None:intergenic 55.0%
CCAGACGGCTTAACCCAACA+CGG + tig0029168:12870-12889 None:intergenic 55.0%
TGTTGGGTTAAGCCGTCTGG+AGG - tig0029168:12870-12889 Msa1440960:CDS 55.0%
TCGATGGTTGGCAGACGAAG+TGG - tig0029168:12989-13008 Msa1440960:CDS 55.0%
GACGAAGTGGAGCAGACAGA+CGG - tig0029168:13002-13021 Msa1440960:intron 55.0%
ACGAAGTGGAGCAGACAGAC+GGG - tig0029168:13003-13022 Msa1440960:intron 55.0%
GAAGCCAACCTGGTGACAAG+AGG - tig0029168:13753-13772 Msa1440960:intron 55.0%
CTGCTGTGAAGGTCCCTAAC+CGG - tig0029168:14017-14036 Msa1440960:intron 55.0%
TGCTGTGAAGGTCCCTAACC+GGG - tig0029168:14018-14037 Msa1440960:intron 55.0%
GCTACACCTTCGGGGACACA+AGG + tig0029168:12368-12387 None:intergenic 60.0%
! TCCCCGAAGGTGTAGCTCAG+TGG - tig0029168:12372-12391 Msa1440960:intron 60.0%
CCGTGTTGGGTTAAGCCGTC+TGG - tig0029168:12867-12886 Msa1440960:CDS 60.0%
GCAGGAGTCAATCATGCCGG+CGG - tig0029168:14827-14846 Msa1440960:intron 60.0%
Chromosome Type Strat End Strand Name
tig0029168 gene 11431 15495 11431 ID=Msa1440960;Name=Msa1440960
tig0029168 mRNA 11431 15495 11431 ID=Msa1440960-mRNA-1;Parent=Msa1440960;Name=Msa1440960-mRNA-1;_AED=0.07;_eAED=0.07;_QI=167|1|1|1|1|1|6|386|419
tig0029168 exon 11431 12095 11431 ID=Msa1440960-mRNA-1:exon:12558;Parent=Msa1440960-mRNA-1
tig0029168 exon 12431 13013 12431 ID=Msa1440960-mRNA-1:exon:12557;Parent=Msa1440960-mRNA-1
tig0029168 exon 13152 13237 13152 ID=Msa1440960-mRNA-1:exon:12556;Parent=Msa1440960-mRNA-1
tig0029168 exon 13853 13923 13853 ID=Msa1440960-mRNA-1:exon:12555;Parent=Msa1440960-mRNA-1
tig0029168 exon 14035 14173 14035 ID=Msa1440960-mRNA-1:exon:12554;Parent=Msa1440960-mRNA-1
tig0029168 exon 15227 15495 15227 ID=Msa1440960-mRNA-1:exon:12553;Parent=Msa1440960-mRNA-1
tig0029168 five_prime_UTR 15329 15495 15329 ID=Msa1440960-mRNA-1:five_prime_utr;Parent=Msa1440960-mRNA-1
tig0029168 CDS 15227 15328 15227 ID=Msa1440960-mRNA-1:cds;Parent=Msa1440960-mRNA-1
tig0029168 CDS 14035 14173 14035 ID=Msa1440960-mRNA-1:cds;Parent=Msa1440960-mRNA-1
tig0029168 CDS 13853 13923 13853 ID=Msa1440960-mRNA-1:cds;Parent=Msa1440960-mRNA-1
tig0029168 CDS 13152 13237 13152 ID=Msa1440960-mRNA-1:cds;Parent=Msa1440960-mRNA-1
tig0029168 CDS 12431 13013 12431 ID=Msa1440960-mRNA-1:cds;Parent=Msa1440960-mRNA-1
tig0029168 CDS 11817 12095 11817 ID=Msa1440960-mRNA-1:cds;Parent=Msa1440960-mRNA-1
tig0029168 three_prime_UTR 11431 11816 11431 ID=Msa1440960-mRNA-1:three_prime_utr;Parent=Msa1440960-mRNA-1
Gene Sequence

>Msa1440960

ATGGGTTTTGATTTGAGACAAGTAGTTGCTGGTATCCTCACTCTCACTATGTTTGTTATGCTTATCCATATGATTAAAAGAGACCATTTTGATTCTGTTCAAGATAATAAATTTCCAGGATCAACAGATGATGCAACCTATGAAAATGTAAAGATGGATACTACACATGTAAGAAAGAATATAGGGCTTTGGAAGGGAGATACTGACGAGTTAAAACCGTGTTGGGTTAAGCCGTCTGGAGACGAAGTGGAGCAGACAGACGGGTTTGTTACCTTTTCATTAACCAATGGTCCAGAGTACCACCTATCTCAGATAGCAGATGCAGTAATTGTGGCTAGATATCTCGGAGCATCACTTGTGATCCCTGACATTAGAGGAAGCCAACCTGGTGACAAGAGGAACTTTGAGGATATTTATGATGTTGACGTGTTCATGAAAAGCATGGAAGGAGTGGTCAAAGTGGTAAAAGATCTTCCTTCTCATGTAACAACTAAAAAAATTGCTGCTGTGAAGGTCCCTAACCGGGTTACCGAAGATTACATAGCTCGACACGTCGAACCAATTTATAGATCAAAGGGAAACGTAAGGCTAGCGACTTACTTTCCTTCAATAAACATGAGAAAGTCAGGGAAAAAAGGTGACACTGATTCCATTGCATGCTTAGCAATGTATGGAAGTTTGGAGTTGCAGCCGGAAATACATGATCTTGTCGACTCAATGGTTGAAAGGCTTAGAACTTTAAGCCGAAAATCAGACGGTCAATTTATTGCTGTGGATTTGAGAGTTGAGATGTTGAACAAGAAAGGTTGCCAAGGAAATGATGATAATGATGGAGAGAAGACCTGTTTCAATGCACAAGAGATTGCAGTGTTTTTGAGAAAGATTGGTATTGATAAGGATACCACAATTTATTTGACACAATCAAGGTGGGATGATAGCCTTGATTCTCTTAAGGACCTGTTTCCTAAAACTTACACGAAGGAGTCAATCATGCCGGCGGATAAGAAGACAAAGTTCCTAGATTCTAAAGATTCTGAATTGGAGAATGTGATTGACTTTTACATTAGTACCGAGAGTGATGTTTTTGTACCAGCAATTTCGGGTCTATTGTATGCGAACGTAGCTGGTAAAAGGATCGGTTCTGGTAAAACACAAATATTGGTTCCAGCCGTAATTTCAGATTCATCGGCTTCAGCAACAAGTTTCTTGTCCCCTTATATCTCCAAGAAAAACCACTTTGCATATTCTTGTTATTGTTAG

Protein sequence

>Msa1440960

MGFDLRQVVAGILTLTMFVMLIHMIKRDHFDSVQDNKFPGSTDDATYENVKMDTTHVRKNIGLWKGDTDELKPCWVKPSGDEVEQTDGFVTFSLTNGPEYHLSQIADAVIVARYLGASLVIPDIRGSQPGDKRNFEDIYDVDVFMKSMEGVVKVVKDLPSHVTTKKIAAVKVPNRVTEDYIARHVEPIYRSKGNVRLATYFPSINMRKSGKKGDTDSIACLAMYGSLELQPEIHDLVDSMVERLRTLSRKSDGQFIAVDLRVEMLNKKGCQGNDDNDGEKTCFNAQEIAVFLRKIGIDKDTTIYLTQSRWDDSLDSLKDLFPKTYTKESIMPADKKTKFLDSKDSELENVIDFYISTESDVFVPAISGLLYANVAGKRIGSGKTQILVPAVISDSSASATSFLSPYISKKNHFAYSCYC*