Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711400 | XP_003610667.1 | 94.527 | 201 | 11 | 0 | 1 | 201 | 1 | 201 | 2.73e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711400 | sp|Q84MC0|UGPI4_ARATH | 58.791 | 182 | 72 | 2 | 20 | 201 | 20 | 198 | 5.29e-70 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711400 | B7FGN4 | 94.527 | 201 | 11 | 0 | 1 | 201 | 1 | 201 | 1.30e-137 | 392 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0711400 | 0.801194 | 1.010387e-48 | -8.615850e-47 |
| Msa0002420 | Msa0711400 | 0.808578 | 2.891655e-50 | -8.615850e-47 |
| Msa0019900 | Msa0711400 | 0.804591 | 2.006811e-49 | -8.615850e-47 |
| Msa0027820 | Msa0711400 | 0.823005 | 1.748029e-53 | -8.615850e-47 |
| Msa0034210 | Msa0711400 | 0.827553 | 1.468058e-54 | -8.615850e-47 |
| Msa0042640 | Msa0711400 | 0.807003 | 6.250415e-50 | -8.615850e-47 |
| Msa0048510 | Msa0711400 | 0.828154 | 1.052405e-54 | -8.615850e-47 |
| Msa0067330 | Msa0711400 | 0.803136 | 4.025407e-49 | -8.615850e-47 |
| Msa0077340 | Msa0711400 | 0.834958 | 2.218297e-56 | -8.615850e-47 |
| Msa0077560 | Msa0711400 | 0.820403 | 6.985438e-53 | -8.615850e-47 |
| Msa0081520 | Msa0711400 | 0.840417 | 8.803737e-58 | -8.615850e-47 |
| Msa0093850 | Msa0711400 | 0.801143 | 1.034782e-48 | -8.615850e-47 |
| Msa0094780 | Msa0711400 | 0.850371 | 1.773201e-60 | -8.615850e-47 |
| Msa0611210 | Msa0711400 | 0.815024 | 1.142519e-51 | -8.615850e-47 |
| Msa0623900 | Msa0711400 | 0.845428 | 4.087054e-59 | -8.615850e-47 |
| Msa0623910 | Msa0711400 | 0.866916 | 2.009043e-65 | -8.615850e-47 |
| Msa0624900 | Msa0711400 | 0.828282 | 9.802133e-55 | -8.615850e-47 |
| Msa0626450 | Msa0711400 | 0.874551 | 6.182614e-68 | -8.615850e-47 |
| Msa0626460 | Msa0711400 | 0.800821 | 1.203945e-48 | -8.615850e-47 |
| Msa0626490 | Msa0711400 | 0.872619 | 2.767259e-67 | -8.615850e-47 |
| Msa0644410 | Msa0711400 | 0.803560 | 3.288035e-49 | -8.615850e-47 |
| Msa0651550 | Msa0711400 | 0.830337 | 3.109199e-55 | -8.615850e-47 |
| Msa0652000 | Msa0711400 | 0.829683 | 4.486976e-55 | -8.615850e-47 |
| Msa0652770 | Msa0711400 | 0.843311 | 1.515317e-58 | -8.615850e-47 |
| Msa0658640 | Msa0711400 | 0.811476 | 6.869380e-51 | -8.615850e-47 |
| Msa0660370 | Msa0711400 | 0.837404 | 5.302475e-57 | -8.615850e-47 |
| Msa0664090 | Msa0711400 | 0.811341 | 7.347115e-51 | -8.615850e-47 |
| Msa0664600 | Msa0711400 | 0.871723 | 5.499752e-67 | -8.615850e-47 |
| Msa0666700 | Msa0711400 | 0.819342 | 1.221391e-52 | -8.615850e-47 |
| Msa0681260 | Msa0711400 | 0.833654 | 4.710165e-56 | -8.615850e-47 |
| Msa0681280 | Msa0711400 | 0.832820 | 7.601123e-56 | -8.615850e-47 |
| Msa0683490 | Msa0711400 | 0.828292 | 9.750738e-55 | -8.615850e-47 |
| Msa0694500 | Msa0711400 | 0.802946 | 4.406010e-49 | -8.615850e-47 |
| Msa0695270 | Msa0711400 | 0.802674 | 5.014341e-49 | -8.615850e-47 |
| Msa0703600 | Msa0711400 | 0.804847 | 1.774339e-49 | -8.615850e-47 |
| Msa0709200 | Msa0711400 | 0.805396 | 1.362354e-49 | -8.615850e-47 |
| Msa0709410 | Msa0711400 | 0.800427 | 1.448769e-48 | -8.615850e-47 |
| Msa0709440 | Msa0711400 | 0.812088 | 5.054858e-51 | -8.615850e-47 |
| Msa0709630 | Msa0711400 | 0.807649 | 4.560135e-50 | -8.615850e-47 |
| Msa0711400 | Msa0716890 | 0.839766 | 1.302201e-57 | -8.615850e-47 |
| Msa0711400 | Msa0735780 | 0.800803 | 1.214470e-48 | -8.615850e-47 |
| Msa0711400 | Msa0738700 | 0.804667 | 1.935382e-49 | -8.615850e-47 |
| Msa0711400 | Msa0751870 | 0.901139 | 3.622286e-78 | -8.615850e-47 |
| Msa0711400 | Msa0754430 | 0.805099 | 1.572306e-49 | -8.615850e-47 |
| Msa0711400 | Msa0758030 | 0.834129 | 3.583432e-56 | -8.615850e-47 |
| Msa0711400 | Msa0783530 | 0.819120 | 1.372405e-52 | -8.615850e-47 |
| Msa0711400 | Msa0795870 | 0.848063 | 7.779551e-60 | -8.615850e-47 |
| Msa0711400 | Msa0819170 | 0.826521 | 2.591388e-54 | -8.615850e-47 |
| Msa0711400 | Msa0821780 | 0.811065 | 8.432818e-51 | -8.615850e-47 |
| Msa0711400 | Msa0824450 | 0.800876 | 1.173202e-48 | -8.615850e-47 |
| Msa0711400 | Msa0833530 | 0.820778 | 5.731213e-53 | -8.615850e-47 |
| Msa0711400 | Msa0833650 | 0.837324 | 5.559082e-57 | -8.615850e-47 |
| Msa0711400 | Msa0851850 | 0.817351 | 3.448862e-52 | -8.615850e-47 |
| Msa0711400 | Msa0859290 | 0.808520 | 2.974200e-50 | -8.615850e-47 |
| Msa0711400 | Msa0860620 | 0.807872 | 4.088644e-50 | -8.615850e-47 |
| Msa0711400 | Msa0878280 | 0.810147 | 1.332085e-50 | -8.615850e-47 |
| Msa0711400 | Msa0880270 | 0.837713 | 4.419310e-57 | -8.615850e-47 |
| Msa0711400 | Msa0894790 | 0.803797 | 2.936277e-49 | -8.615850e-47 |
| Msa0711400 | Msa0945190 | 0.845541 | 3.809528e-59 | -8.615850e-47 |
| Msa0711400 | Msa0981320 | 0.843835 | 1.097636e-58 | -8.615850e-47 |
| Msa0711400 | Msa0982650 | 0.824540 | 7.638401e-54 | -8.615850e-47 |
| Msa0711400 | Msa1035610 | 0.800936 | 1.140418e-48 | -8.615850e-47 |
| Msa0711400 | Msa1042160 | 0.815720 | 8.001705e-52 | -8.615850e-47 |
| Msa0711400 | Msa1042190 | 0.819734 | 9.942156e-53 | -8.615850e-47 |
| Msa0711400 | Msa1072940 | 0.854115 | 1.525529e-61 | -8.615850e-47 |
| Msa0711400 | Msa1084530 | 0.814119 | 1.812171e-51 | -8.615850e-47 |
| Msa0711400 | Msa1085330 | 0.802228 | 6.196614e-49 | -8.615850e-47 |
| Msa0711400 | Msa1101160 | 0.810086 | 1.372681e-50 | -8.615850e-47 |
| Msa0711400 | Msa1111380 | 0.809520 | 1.817245e-50 | -8.615850e-47 |
| Msa0711400 | Msa1113340 | 0.807395 | 5.161937e-50 | -8.615850e-47 |
| Msa0711400 | Msa1123210 | 0.830157 | 3.439437e-55 | -8.615850e-47 |
| Msa0711400 | Msa1124950 | 0.818626 | 1.777031e-52 | -8.615850e-47 |
| Msa0711400 | Msa1125820 | 0.812783 | 3.563892e-51 | -8.615850e-47 |
| Msa0711400 | Msa1125990 | 0.812744 | 3.634045e-51 | -8.615850e-47 |
| Msa0711400 | Msa1130950 | 0.811723 | 6.069568e-51 | -8.615850e-47 |
| Msa0711400 | Msa1132530 | 0.807830 | 4.173412e-50 | -8.615850e-47 |
| Msa0711400 | Msa1132840 | 0.836195 | 1.078647e-56 | -8.615850e-47 |
| Msa0711400 | Msa1160920 | 0.847460 | 1.140619e-59 | -8.615850e-47 |
| Msa0711400 | Msa1167330 | 0.813133 | 2.987030e-51 | -8.615850e-47 |
| Msa0711400 | Msa1167470 | 0.812783 | 3.563674e-51 | -8.615850e-47 |
| Msa0711400 | Msa1171290 | 0.815999 | 6.933194e-52 | -8.615850e-47 |
| Msa0711400 | Msa1174840 | 0.824874 | 6.370826e-54 | -8.615850e-47 |
| Msa0711400 | Msa1186020 | 0.801405 | 9.146955e-49 | -8.615850e-47 |
| Msa0711400 | Msa1192570 | 0.824539 | 7.640830e-54 | -8.615850e-47 |
| Msa0711400 | Msa1204310 | 0.818918 | 1.525261e-52 | -8.615850e-47 |
| Msa0711400 | Msa1206230 | 0.855855 | 4.766804e-62 | -8.615850e-47 |
| Msa0711400 | Msa1208950 | 0.845769 | 3.302845e-59 | -8.615850e-47 |
| Msa0711400 | Msa1215870 | 0.817150 | 3.828930e-52 | -8.615850e-47 |
| Msa0711400 | Msa1226520 | 0.805594 | 1.238186e-49 | -8.615850e-47 |
| Msa0711400 | Msa1240260 | 0.803302 | 3.718941e-49 | -8.615850e-47 |
| Msa0711400 | Msa1257440 | 0.814820 | 1.268226e-51 | -8.615850e-47 |
| Msa0711400 | Msa1279150 | 0.821726 | 3.463661e-53 | -8.615850e-47 |
| Msa0711400 | Msa1297970 | 0.843338 | 1.489784e-58 | -8.615850e-47 |
| Msa0711400 | Msa1303560 | 0.808547 | 2.936144e-50 | -8.615850e-47 |
| Msa0711400 | Msa1303650 | 0.808252 | 3.392483e-50 | -8.615850e-47 |
| Msa0711400 | Msa1305250 | 0.803139 | 4.021007e-49 | -8.615850e-47 |
| Msa0711400 | Msa1306640 | 0.830764 | 2.444373e-55 | -8.615850e-47 |
| Msa0711400 | Msa1307630 | 0.844549 | 7.058607e-59 | -8.615850e-47 |
| Msa0711400 | Msa1314980 | 0.812606 | 3.895527e-51 | -8.615850e-47 |
| Msa0711400 | Msa1315130 | 0.800489 | 1.407427e-48 | -8.615850e-47 |
| Msa0711400 | Msa1316330 | 0.801124 | 1.043918e-48 | -8.615850e-47 |
| Msa0711400 | Msa1320670 | 0.807020 | 6.198161e-50 | -8.615850e-47 |
| Msa0711400 | Msa1338540 | 0.801746 | 7.785126e-49 | -8.615850e-47 |
| Msa0711400 | Msa1348090 | 0.807787 | 4.262394e-50 | -8.615850e-47 |
| Msa0711400 | Msa1356830 | 0.838203 | 3.306716e-57 | -8.615850e-47 |
| Msa0711400 | Msa1359490 | 0.805160 | 1.526418e-49 | -8.615850e-47 |
| Msa0711400 | Msa1371910 | 0.947672 | 4.259826e-106 | -8.615850e-47 |
| Msa0711400 | Msa1375280 | 0.834885 | 2.313430e-56 | -8.615850e-47 |
| Msa0711400 | Msa1392580 | 0.805705 | 1.173184e-49 | -8.615850e-47 |
| Msa0711400 | Msa1403710 | 0.813643 | 2.306812e-51 | -8.615850e-47 |
| Msa0711400 | Msa1405460 | 0.836327 | 9.983408e-57 | -8.615850e-47 |
| Msa0711400 | Msa1412000 | 0.840240 | 9.795720e-58 | -8.615850e-47 |
| Msa0711400 | Msa1415540 | 0.835664 | 1.470831e-56 | -8.615850e-47 |
| Msa0711400 | Msa1427110 | 0.873463 | 1.441688e-67 | -8.615850e-47 |
| Msa0711400 | Msa1432500 | 0.809199 | 2.129669e-50 | -8.615850e-47 |
| Msa0711400 | Msa1437940 | 0.836052 | 1.173198e-56 | -8.615850e-47 |
| Msa0711400 | Msa1440960 | 0.878368 | 2.972152e-69 | -8.615850e-47 |
| Msa0711400 | Msa1452140 | 0.825949 | 3.545825e-54 | -8.615850e-47 |
| Msa0711400 | Msa1459460 | 0.802042 | 6.769788e-49 | -8.615850e-47 |
| Msa0711400 | Msa1460720 | 0.893032 | 9.164729e-75 | -8.615850e-47 |
| Msa0123340 | Msa0711400 | 0.811779 | 5.903359e-51 | -8.615850e-47 |
| Msa0125360 | Msa0711400 | 0.809650 | 1.704141e-50 | -8.615850e-47 |
| Msa0128310 | Msa0711400 | 0.838267 | 3.182999e-57 | -8.615850e-47 |
| Msa0136650 | Msa0711400 | 0.864173 | 1.471226e-64 | -8.615850e-47 |
| Msa0140280 | Msa0711400 | 0.809089 | 2.247587e-50 | -8.615850e-47 |
| Msa0158860 | Msa0711400 | 0.831134 | 1.982975e-55 | -8.615850e-47 |
| Msa0173890 | Msa0711400 | 0.818263 | 2.146952e-52 | -8.615850e-47 |
| Msa0174440 | Msa0711400 | 0.830130 | 3.492178e-55 | -8.615850e-47 |
| Msa0174450 | Msa0711400 | 0.866847 | 2.113787e-65 | -8.615850e-47 |
| Msa0189900 | Msa0711400 | 0.804242 | 2.372934e-49 | -8.615850e-47 |
| Msa0200050 | Msa0711400 | 0.800603 | 1.333880e-48 | -8.615850e-47 |
| Msa0221000 | Msa0711400 | 0.805503 | 1.293340e-49 | -8.615850e-47 |
| Msa0222560 | Msa0711400 | 0.841116 | 5.775242e-58 | -8.615850e-47 |
| Msa0225480 | Msa0711400 | 0.806091 | 9.731854e-50 | -8.615850e-47 |
| Msa0225860 | Msa0711400 | 0.811273 | 7.601238e-51 | -8.615850e-47 |
| Msa0369790 | Msa0711400 | 0.856269 | 3.605146e-62 | -8.615850e-47 |
| Msa0375640 | Msa0711400 | 0.820411 | 6.956517e-53 | -8.615850e-47 |
| Msa0378720 | Msa0711400 | 0.820359 | 7.151594e-53 | -8.615850e-47 |
| Msa0380620 | Msa0711400 | 0.851642 | 7.769411e-61 | -8.615850e-47 |
| Msa0390970 | Msa0711400 | 0.837788 | 4.226217e-57 | -8.615850e-47 |
| Msa0424160 | Msa0711400 | 0.826722 | 2.320496e-54 | -8.615850e-47 |
| Msa0428370 | Msa0711400 | 0.824183 | 9.264927e-54 | -8.615850e-47 |
| Msa0430260 | Msa0711400 | 0.873311 | 1.622275e-67 | -8.615850e-47 |
| Msa0464000 | Msa0711400 | 0.854830 | 9.478288e-62 | -8.615850e-47 |
| Msa0472950 | Msa0711400 | 0.823955 | 1.048276e-53 | -8.615850e-47 |
| Msa0474730 | Msa0711400 | 0.841958 | 3.464180e-58 | -8.615850e-47 |
| Msa0481890 | Msa0711400 | 0.810678 | 1.022838e-50 | -8.615850e-47 |
| Msa0242590 | Msa0711400 | 0.808967 | 2.387139e-50 | -8.615850e-47 |
| Msa0244640 | Msa0711400 | 0.800633 | 1.315056e-48 | -8.615850e-47 |
| Msa0249540 | Msa0711400 | 0.808444 | 3.088200e-50 | -8.615850e-47 |
| Msa0281470 | Msa0711400 | 0.819557 | 1.091256e-52 | -8.615850e-47 |
| Msa0298470 | Msa0711400 | 0.826277 | 2.963727e-54 | -8.615850e-47 |
| Msa0298500 | Msa0711400 | 0.823461 | 1.368129e-53 | -8.615850e-47 |
| Msa0301820 | Msa0711400 | 0.821132 | 4.749424e-53 | -8.615850e-47 |
| Msa0307270 | Msa0711400 | 0.859794 | 3.231406e-63 | -8.615850e-47 |
| Msa0330520 | Msa0711400 | 0.804241 | 2.374009e-49 | -8.615850e-47 |
| Msa0340500 | Msa0711400 | 0.812983 | 3.221072e-51 | -8.615850e-47 |
| Msa0483100 | Msa0711400 | 0.809948 | 1.469714e-50 | -8.615850e-47 |
| Msa0500380 | Msa0711400 | 0.858979 | 5.679736e-63 | -8.615850e-47 |
| Msa0509550 | Msa0711400 | 0.856766 | 2.577145e-62 | -8.615850e-47 |
| Msa0515800 | Msa0711400 | 0.813479 | 2.507062e-51 | -8.615850e-47 |
| Msa0519760 | Msa0711400 | 0.875666 | 2.574812e-68 | -8.615850e-47 |
| Msa0519810 | Msa0711400 | 0.869034 | 4.189257e-66 | -8.615850e-47 |
| Msa0519840 | Msa0711400 | 0.877763 | 4.841710e-69 | -8.615850e-47 |
| Msa0528570 | Msa0711400 | 0.839869 | 1.224006e-57 | -8.615850e-47 |
| Msa0529030 | Msa0711400 | 0.837341 | 5.504097e-57 | -8.615850e-47 |
| Msa0534720 | Msa0711400 | 0.807035 | 6.151564e-50 | -8.615850e-47 |
| Msa0544740 | Msa0711400 | 0.809180 | 2.148948e-50 | -8.615850e-47 |
| Msa0555860 | Msa0711400 | -0.804836 | 1.784421e-49 | -8.615850e-47 |
| Msa0567170 | Msa0711400 | 0.817227 | 3.678477e-52 | -8.615850e-47 |
| Msa0571290 | Msa0711400 | 0.807148 | 5.822563e-50 | -8.615850e-47 |
| Msa0573380 | Msa0711400 | 0.815041 | 1.132942e-51 | -8.615850e-47 |
| Msa0580370 | Msa0711400 | 0.834445 | 2.984929e-56 | -8.615850e-47 |
| Msa0597270 | Msa0711400 | 0.801126 | 1.043101e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711400 | MtrunA17_Chr5g0394151 | 94.527 | 201 | 11 | 0 | 1 | 201 | 1 | 201 | 2.51e-141 | 392 |
| Msa0711400 | MtrunA17_Chr1g0205951 | 65.366 | 205 | 61 | 3 | 1 | 201 | 1 | 199 | 1.67e-94 | 273 |
| Msa0711400 | MtrunA17_Chr7g0272941 | 40.000 | 160 | 92 | 3 | 14 | 170 | 16 | 174 | 1.15e-35 | 124 |
| Msa0711400 | MtrunA17_Chr1g0191761 | 40.645 | 155 | 90 | 2 | 12 | 164 | 23 | 177 | 3.64e-35 | 123 |
| Msa0711400 | MtrunA17_Chr1g0191781 | 33.702 | 181 | 118 | 2 | 3 | 181 | 6 | 186 | 8.87e-32 | 114 |
| Msa0711400 | MtrunA17_Chr1g0191771 | 36.296 | 135 | 85 | 1 | 27 | 160 | 46 | 180 | 2.26e-27 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711400 | AT3G06035.1 | 58.791 | 182 | 72 | 2 | 20 | 201 | 20 | 198 | 5.38e-71 | 214 |
| Msa0711400 | AT5G19250.1 | 65.972 | 144 | 49 | 0 | 27 | 170 | 28 | 171 | 1.48e-66 | 203 |
| Msa0711400 | AT1G54860.1 | 41.237 | 194 | 109 | 4 | 5 | 193 | 6 | 199 | 6.42e-51 | 163 |
| Msa0711400 | AT5G19240.1 | 46.784 | 171 | 77 | 4 | 27 | 194 | 28 | 187 | 7.08e-43 | 143 |
| Msa0711400 | AT5G19230.2 | 48.485 | 165 | 75 | 3 | 1 | 164 | 1 | 156 | 7.22e-42 | 140 |
| Msa0711400 | AT5G19230.1 | 48.485 | 165 | 75 | 3 | 1 | 164 | 1 | 156 | 7.22e-42 | 140 |
Find 66 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGCTTTATCACCAAAAT+TGG | 0.148873 | 5_1:+3279407 | Msa0711400:CDS |
| TAAACTAAACTAAACTTATT+TGG | 0.179548 | 5_1:+3277942 | Msa0711400:five_prime_UTR |
| GACTCAAAGTTTACTGGAAT+TGG | 0.202771 | 5_1:+3279281 | Msa0711400:CDS |
| GTAATGCCTGCTTGTGTTCC+TGG | 0.222223 | 5_1:+3279197 | Msa0711400:CDS |
| GGATTGGTTCCGAAGATAAT+TGG | 0.229248 | 5_1:+3279303 | Msa0711400:CDS |
| CTTAATGACTCAAAGTTTAC+TGG | 0.244932 | 5_1:+3279275 | Msa0711400:CDS |
| TTAAGTGACATTTAGTTAAA+AGG | 0.252789 | 5_1:-3279148 | None:intergenic |
| GTGTTTCAGGATATTATATT+TGG | 0.261669 | 5_1:-3277879 | None:intergenic |
| GCAGTAAACCAATCCAATTT+TGG | 0.309912 | 5_1:-3279420 | None:intergenic |
| TGAGGAAGATGATCTTTATC+AGG | 0.311325 | 5_1:+3278956 | Msa0711400:CDS |
| AGTTTAGTTTAGTTTAGTTT+AGG | 0.330278 | 5_1:-3277935 | None:intergenic |
| ACAATAAATTGTTCTATTGA+TGG | 0.334563 | 5_1:+3279798 | Msa0711400:three_prime_UTR |
| TTCCTTCTATTCTTCTTCTC+TGG | 0.339502 | 5_1:-3279675 | None:intergenic |
| TTGTGTTCCTGGCCTTGTTC+CGG | 0.361906 | 5_1:+3279208 | Msa0711400:CDS |
| ACTATCACTGTCTGGGAAAC+GGG | 0.372098 | 5_1:+3279560 | Msa0711400:three_prime_UTR |
| AGTTAAAAGGTCTTCATAGT+TGG | 0.372121 | 5_1:-3279135 | None:intergenic |
| GAAGAAGATACTTGATTTGA+AGG | 0.375473 | 5_1:-3278006 | None:intergenic |
| AGTGATAGTATAAGCCTATA+TGG | 0.384109 | 5_1:-3279546 | None:intergenic |
| TGCCAGAGAAGAAGAATAGA+AGG | 0.388717 | 5_1:+3279673 | Msa0711400:three_prime_UTR |
| ACTCAAAGTTTACTGGAATT+GGG | 0.389579 | 5_1:+3279282 | Msa0711400:CDS |
| TACAAGGTTGATTCTTGAAC+TGG | 0.391876 | 5_1:-3279064 | None:intergenic |
| AGGCTTATACTATCACTGTC+TGG | 0.401288 | 5_1:+3279552 | Msa0711400:three_prime_UTR |
| GTTAAAAGGTCTTCATAGTT+GGG | 0.403819 | 5_1:-3279134 | None:intergenic |
| CACGTGCACCGACAGTGTTT+TGG | 0.406240 | 5_1:-3277904 | None:intergenic |
| TACTATCACTGTCTGGGAAA+CGG | 0.423338 | 5_1:+3279559 | Msa0711400:three_prime_UTR |
| TGCTCATTGCTCTTGTTAGT+TGG | 0.425769 | 5_1:+3279440 | Msa0711400:CDS |
| AGCATCCTCACGCTCAAAAC+AGG | 0.435655 | 5_1:-3279472 | None:intergenic |
| CTTTATCACCAAAATTGGAT+TGG | 0.444400 | 5_1:+3279412 | Msa0711400:CDS |
| TCAAACTTTGAAGTAACAAA+TGG | 0.445254 | 5_1:+3278027 | Msa0711400:exon |
| AACAACAATCCAATTATCTT+CGG | 0.461927 | 5_1:-3279312 | None:intergenic |
| AGTTTAGTTTAGTTTAGGAC+AGG | 0.462035 | 5_1:-3277930 | None:intergenic |
| CTCGTCATCACTAGAACTCT+CGG | 0.472274 | 5_1:-3279372 | None:intergenic |
| AGTGATGACGAGACTTCTAA+TGG | 0.482206 | 5_1:+3279383 | Msa0711400:CDS |
| AAGTTTACTGGAATTGGGAT+TGG | 0.486609 | 5_1:+3279287 | Msa0711400:CDS |
| ACAATGTCCGGAACAAGGCC+AGG | 0.505794 | 5_1:-3279215 | None:intergenic |
| TCTTCATAGTTGGGTAATTG+AGG | 0.505804 | 5_1:-3279125 | None:intergenic |
| TACAGATCCATCCCTTGTGT+TGG | 0.505945 | 5_1:-3279177 | None:intergenic |
| TTGCAGCATAGTCGGTAAGC+AGG | 0.507546 | 5_1:+3279515 | Msa0711400:three_prime_UTR |
| GCACCTGTGGTATTTGTACA+AGG | 0.509795 | 5_1:-3279080 | None:intergenic |
| AATATTTCCAACACAAGGGA+TGG | 0.513314 | 5_1:+3279170 | Msa0711400:CDS |
| TTCTCGACACATCTTATGCA+TGG | 0.516308 | 5_1:+3277811 | Msa0711400:five_prime_UTR |
| ACAAGGCCAGGAACACAAGC+AGG | 0.520245 | 5_1:-3279203 | None:intergenic |
| GGCTTATACTATCACTGTCT+GGG | 0.523682 | 5_1:+3279553 | Msa0711400:three_prime_UTR |
| TATAAGCCTATATGGTAGCT+TGG | 0.531909 | 5_1:-3279538 | None:intergenic |
| GAAGATACTTGATTTGAAGG+TGG | 0.540708 | 5_1:-3278003 | None:intergenic |
| AAATTAGAGAGGACAATGTC+CGG | 0.542734 | 5_1:-3279227 | None:intergenic |
| GGTAATTGAGGCTCAGTACC+TGG | 0.547704 | 5_1:-3279113 | None:intergenic |
| AGCAGGCCAAGCTACCATAT+AGG | 0.557003 | 5_1:+3279532 | Msa0711400:three_prime_UTR |
| TGAGTGACTGAATAAGAGAA+TGG | 0.560522 | 5_1:-3278086 | None:intergenic |
| ATCATCAAATAATTAAGCAA+TGG | 0.567763 | 5_1:-3279856 | None:intergenic |
| ACTTAAATATTTCCAACACA+AGG | 0.568858 | 5_1:+3279165 | Msa0711400:CDS |
| TGGTATTGTGTTAGCACCTG+TGG | 0.587893 | 5_1:-3279093 | None:intergenic |
| AAACTTATTTGGTACTTCTG+CGG | 0.593037 | 5_1:+3277953 | Msa0711400:five_prime_UTR |
| TCGTCATCACTAGAACTCTC+GGG | 0.593940 | 5_1:-3279371 | None:intergenic |
| GAGGAAGATGATCTTTATCA+GGG | 0.594123 | 5_1:+3278957 | Msa0711400:CDS |
| GAGATTTCGTGAAATTAGAG+AGG | 0.595369 | 5_1:-3279238 | None:intergenic |
| CACTCAGTTCATTGTGACCA+TGG | 0.595566 | 5_1:+3278103 | Msa0711400:CDS |
| CGGGAAACTGCAAATAGTGA+TGG | 0.598265 | 5_1:+3279579 | Msa0711400:three_prime_UTR |
| CAACCTTGTACAAATACCAC+AGG | 0.614385 | 5_1:+3279077 | Msa0711400:CDS |
| AGAGGACAATGTCCGGAACA+AGG | 0.617052 | 5_1:-3279220 | None:intergenic |
| ACAGGTGCTAACACAATACC+AGG | 0.623473 | 5_1:+3279095 | Msa0711400:CDS |
| CTTAAATATTTCCAACACAA+GGG | 0.640170 | 5_1:+3279166 | Msa0711400:CDS |
| GCTTCCGTCAGAAGTGCTTG+TGG | 0.642715 | 5_1:-3279342 | None:intergenic |
| TTGACCACAAGCACTTCTGA+CGG | 0.644420 | 5_1:+3279338 | Msa0711400:CDS |
| AAACACAGCCAAAACACTGT+CGG | 0.653969 | 5_1:+3277896 | Msa0711400:five_prime_UTR |
| ATGTCAAGTTCAATGATGTG+CGG | 0.702075 | 5_1:-3278992 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACTAAACTAAACTTATT+TGG | + | chr5_1:3277942-3277961 | Msa0711400:five_prime_UTR | 15.0% |
| !! | ATATGATAACCAAAATATAT+AGG | + | chr5_1:3278251-3278270 | Msa0711400:intron | 15.0% |
| !!! | TAATTAAAGCCTATATATTT+TGG | - | chr5_1:3278263-3278282 | None:intergenic | 15.0% |
| !!! | CTTGTATTTTAATTTCAAAA+TGG | + | chr5_1:3279828-3279847 | Msa0711400:three_prime_UTR | 15.0% |
| !! | TAAACTAAACTAAACTTATT+TGG | + | chr5_1:3277942-3277961 | Msa0711400:five_prime_UTR | 15.0% |
| !! | ATATGATAACCAAAATATAT+AGG | + | chr5_1:3278251-3278270 | Msa0711400:intron | 15.0% |
| !!! | TAATTAAAGCCTATATATTT+TGG | - | chr5_1:3278263-3278282 | None:intergenic | 15.0% |
| !!! | CTTGTATTTTAATTTCAAAA+TGG | + | chr5_1:3279828-3279847 | Msa0711400:three_prime_UTR | 15.0% |
| !!! | TATATTTGGTTTTGTTTTGA+TGG | - | chr5_1:3277868-3277887 | None:intergenic | 20.0% |
| !!! | AGTTTAGTTTAGTTTAGTTT+AGG | - | chr5_1:3277938-3277957 | None:intergenic | 20.0% |
| !!! | TAAAGACTTTTACTATAAGT+TGG | + | chr5_1:3278416-3278435 | Msa0711400:intron | 20.0% |
| !!! | AAAGACTTTTACTATAAGTT+GGG | + | chr5_1:3278417-3278436 | Msa0711400:intron | 20.0% |
| !! | TTAAGTGACATTTAGTTAAA+AGG | - | chr5_1:3279151-3279170 | None:intergenic | 20.0% |
| !!! | TAATTTTGCTTCAATATTGT+CGG | + | chr5_1:3279639-3279658 | Msa0711400:three_prime_UTR | 20.0% |
| !!! | AAAAAGCTGTTTTTTTATGT+AGG | + | chr5_1:3279698-3279717 | Msa0711400:three_prime_UTR | 20.0% |
| !!! | AAAAGCTGTTTTTTTATGTA+GGG | + | chr5_1:3279699-3279718 | Msa0711400:three_prime_UTR | 20.0% |
| !! | ACAATAAATTGTTCTATTGA+TGG | + | chr5_1:3279798-3279817 | Msa0711400:three_prime_UTR | 20.0% |
| !!! | TATATTTGGTTTTGTTTTGA+TGG | - | chr5_1:3277868-3277887 | None:intergenic | 20.0% |
| !!! | AGTTTAGTTTAGTTTAGTTT+AGG | - | chr5_1:3277938-3277957 | None:intergenic | 20.0% |
| !!! | TAAAGACTTTTACTATAAGT+TGG | + | chr5_1:3278416-3278435 | Msa0711400:intron | 20.0% |
| !!! | AAAGACTTTTACTATAAGTT+GGG | + | chr5_1:3278417-3278436 | Msa0711400:intron | 20.0% |
| !! | TTAAGTGACATTTAGTTAAA+AGG | - | chr5_1:3279151-3279170 | None:intergenic | 20.0% |
| !!! | TAATTTTGCTTCAATATTGT+CGG | + | chr5_1:3279639-3279658 | Msa0711400:three_prime_UTR | 20.0% |
| !!! | AAAAAGCTGTTTTTTTATGT+AGG | + | chr5_1:3279698-3279717 | Msa0711400:three_prime_UTR | 20.0% |
| !!! | AAAAGCTGTTTTTTTATGTA+GGG | + | chr5_1:3279699-3279718 | Msa0711400:three_prime_UTR | 20.0% |
| !! | ACAATAAATTGTTCTATTGA+TGG | + | chr5_1:3279798-3279817 | Msa0711400:three_prime_UTR | 20.0% |
| !!! | TTTCTTCTTCGATTTTGTTT+TGG | + | chr5_1:3277766-3277785 | Msa0711400:five_prime_UTR | 25.0% |
| ! | GTGTTTCAGGATATTATATT+TGG | - | chr5_1:3277882-3277901 | None:intergenic | 25.0% |
| !!! | TCAAACTTTGAAGTAACAAA+TGG | + | chr5_1:3278027-3278046 | Msa0711400:exon | 25.0% |
| ! | AATAGAAAGAATAGTTACCA+TGG | - | chr5_1:3278123-3278142 | None:intergenic | 25.0% |
| ! | TTTAAATGCATTATCCACAA+TGG | - | chr5_1:3278400-3278419 | None:intergenic | 25.0% |
| ! | ACTTAAATATTTCCAACACA+AGG | + | chr5_1:3279165-3279184 | Msa0711400:CDS | 25.0% |
| ! | CTTAAATATTTCCAACACAA+GGG | + | chr5_1:3279166-3279185 | Msa0711400:CDS | 25.0% |
| ! | AACAACAATCCAATTATCTT+CGG | - | chr5_1:3279315-3279334 | None:intergenic | 25.0% |
| !!! | TTTCTTCTTCGATTTTGTTT+TGG | + | chr5_1:3277766-3277785 | Msa0711400:five_prime_UTR | 25.0% |
| ! | GTGTTTCAGGATATTATATT+TGG | - | chr5_1:3277882-3277901 | None:intergenic | 25.0% |
| !!! | TCAAACTTTGAAGTAACAAA+TGG | + | chr5_1:3278027-3278046 | Msa0711400:exon | 25.0% |
| ! | AATAGAAAGAATAGTTACCA+TGG | - | chr5_1:3278123-3278142 | None:intergenic | 25.0% |
| ! | TTTAAATGCATTATCCACAA+TGG | - | chr5_1:3278400-3278419 | None:intergenic | 25.0% |
| ! | ACTTAAATATTTCCAACACA+AGG | + | chr5_1:3279165-3279184 | Msa0711400:CDS | 25.0% |
| ! | CTTAAATATTTCCAACACAA+GGG | + | chr5_1:3279166-3279185 | Msa0711400:CDS | 25.0% |
| ! | AACAACAATCCAATTATCTT+CGG | - | chr5_1:3279315-3279334 | None:intergenic | 25.0% |
| ! | AGTTTAGTTTAGTTTAGGAC+AGG | - | chr5_1:3277933-3277952 | None:intergenic | 30.0% |
| AAACTTATTTGGTACTTCTG+CGG | + | chr5_1:3277953-3277972 | Msa0711400:five_prime_UTR | 30.0% | |
| ! | GAAGAAGATACTTGATTTGA+AGG | - | chr5_1:3278009-3278028 | None:intergenic | 30.0% |
| ATAGTTAGATAGATCCATTG+TGG | + | chr5_1:3278383-3278402 | Msa0711400:intron | 30.0% | |
| CTGTATTGAATCAACAAAAC+AGG | - | chr5_1:3278447-3278466 | None:intergenic | 30.0% | |
| ! | AGATACATACAAAGCTTGTT+TGG | + | chr5_1:3278511-3278530 | Msa0711400:intron | 30.0% |
| ! | TAAGTTTTCTTTAGTTACCC+AGG | - | chr5_1:3278654-3278673 | None:intergenic | 30.0% |
| GTAAGTGTTTATGCTATAAG+CGG | + | chr5_1:3278734-3278753 | Msa0711400:intron | 30.0% | |
| GTTAAAAGGTCTTCATAGTT+GGG | - | chr5_1:3279137-3279156 | None:intergenic | 30.0% | |
| AGTTAAAAGGTCTTCATAGT+TGG | - | chr5_1:3279138-3279157 | None:intergenic | 30.0% | |
| CTTAATGACTCAAAGTTTAC+TGG | + | chr5_1:3279275-3279294 | Msa0711400:CDS | 30.0% | |
| ACTCAAAGTTTACTGGAATT+GGG | + | chr5_1:3279282-3279301 | Msa0711400:CDS | 30.0% | |
| ! | GAAAGCTTTATCACCAAAAT+TGG | + | chr5_1:3279407-3279426 | Msa0711400:CDS | 30.0% |
| CTTTATCACCAAAATTGGAT+TGG | + | chr5_1:3279412-3279431 | Msa0711400:CDS | 30.0% | |
| ! | CATTTTTATTGCAGCATAGT+CGG | + | chr5_1:3279507-3279526 | Msa0711400:three_prime_UTR | 30.0% |
| AGTGATAGTATAAGCCTATA+TGG | - | chr5_1:3279549-3279568 | None:intergenic | 30.0% | |
| ! | AGTTTAGTTTAGTTTAGGAC+AGG | - | chr5_1:3277933-3277952 | None:intergenic | 30.0% |
| AAACTTATTTGGTACTTCTG+CGG | + | chr5_1:3277953-3277972 | Msa0711400:five_prime_UTR | 30.0% | |
| ! | GAAGAAGATACTTGATTTGA+AGG | - | chr5_1:3278009-3278028 | None:intergenic | 30.0% |
| ATAGTTAGATAGATCCATTG+TGG | + | chr5_1:3278383-3278402 | Msa0711400:intron | 30.0% | |
| CTGTATTGAATCAACAAAAC+AGG | - | chr5_1:3278447-3278466 | None:intergenic | 30.0% | |
| ! | AGATACATACAAAGCTTGTT+TGG | + | chr5_1:3278511-3278530 | Msa0711400:intron | 30.0% |
| ! | TAAGTTTTCTTTAGTTACCC+AGG | - | chr5_1:3278654-3278673 | None:intergenic | 30.0% |
| GTAAGTGTTTATGCTATAAG+CGG | + | chr5_1:3278734-3278753 | Msa0711400:intron | 30.0% | |
| GTTAAAAGGTCTTCATAGTT+GGG | - | chr5_1:3279137-3279156 | None:intergenic | 30.0% | |
| AGTTAAAAGGTCTTCATAGT+TGG | - | chr5_1:3279138-3279157 | None:intergenic | 30.0% | |
| CTTAATGACTCAAAGTTTAC+TGG | + | chr5_1:3279275-3279294 | Msa0711400:CDS | 30.0% | |
| ACTCAAAGTTTACTGGAATT+GGG | + | chr5_1:3279282-3279301 | Msa0711400:CDS | 30.0% | |
| ! | GAAAGCTTTATCACCAAAAT+TGG | + | chr5_1:3279407-3279426 | Msa0711400:CDS | 30.0% |
| CTTTATCACCAAAATTGGAT+TGG | + | chr5_1:3279412-3279431 | Msa0711400:CDS | 30.0% | |
| ! | CATTTTTATTGCAGCATAGT+CGG | + | chr5_1:3279507-3279526 | Msa0711400:three_prime_UTR | 30.0% |
| AGTGATAGTATAAGCCTATA+TGG | - | chr5_1:3279549-3279568 | None:intergenic | 30.0% | |
| !!! | GGTTTTGTTTTGATGGTAGT+AGG | - | chr5_1:3277861-3277880 | None:intergenic | 35.0% |
| ! | GAAGATACTTGATTTGAAGG+TGG | - | chr5_1:3278006-3278025 | None:intergenic | 35.0% |
| TGAGTGACTGAATAAGAGAA+TGG | - | chr5_1:3278089-3278108 | None:intergenic | 35.0% | |
| !! | AGATCTAGCTAGTTCTACAT+TGG | - | chr5_1:3278198-3278217 | None:intergenic | 35.0% |
| TAGAACTAGCTAGATCTGAT+AGG | + | chr5_1:3278201-3278220 | Msa0711400:intron | 35.0% | |
| AGAACTAGCTAGATCTGATA+GGG | + | chr5_1:3278202-3278221 | Msa0711400:intron | 35.0% | |
| ACACACTTACGAGATTGTTT+AGG | + | chr5_1:3278564-3278583 | Msa0711400:intron | 35.0% | |
| TTATTCCCATAAGCTTTCCT+GGG | + | chr5_1:3278634-3278653 | Msa0711400:intron | 35.0% | |
| TTGAGTGAATCTATCTCTCT+TGG | + | chr5_1:3278829-3278848 | Msa0711400:intron | 35.0% | |
| TGAGGAAGATGATCTTTATC+AGG | + | chr5_1:3278956-3278975 | Msa0711400:CDS | 35.0% | |
| GAGGAAGATGATCTTTATCA+GGG | + | chr5_1:3278957-3278976 | Msa0711400:CDS | 35.0% | |
| ATGTCAAGTTCAATGATGTG+CGG | - | chr5_1:3278995-3279014 | None:intergenic | 35.0% | |
| ! | TACAAGGTTGATTCTTGAAC+TGG | - | chr5_1:3279067-3279086 | None:intergenic | 35.0% |
| TCTTCATAGTTGGGTAATTG+AGG | - | chr5_1:3279128-3279147 | None:intergenic | 35.0% | |
| AATATTTCCAACACAAGGGA+TGG | + | chr5_1:3279170-3279189 | Msa0711400:CDS | 35.0% | |
| AAATTAGAGAGGACAATGTC+CGG | - | chr5_1:3279230-3279249 | None:intergenic | 35.0% | |
| GAGATTTCGTGAAATTAGAG+AGG | - | chr5_1:3279241-3279260 | None:intergenic | 35.0% | |
| GACTCAAAGTTTACTGGAAT+TGG | + | chr5_1:3279281-3279300 | Msa0711400:CDS | 35.0% | |
| AAGTTTACTGGAATTGGGAT+TGG | + | chr5_1:3279287-3279306 | Msa0711400:CDS | 35.0% | |
| ! | GCAGTAAACCAATCCAATTT+TGG | - | chr5_1:3279423-3279442 | None:intergenic | 35.0% |
| TATAAGCCTATATGGTAGCT+TGG | - | chr5_1:3279541-3279560 | None:intergenic | 35.0% | |
| !! | TGTTTTTCAGTGAAGCATAG+AGG | + | chr5_1:3279606-3279625 | Msa0711400:three_prime_UTR | 35.0% |
| !! | GTTTTTCAGTGAAGCATAGA+GGG | + | chr5_1:3279607-3279626 | Msa0711400:three_prime_UTR | 35.0% |
| TTCCTTCTATTCTTCTTCTC+TGG | - | chr5_1:3279678-3279697 | None:intergenic | 35.0% | |
| !!! | GGTTTTGTTTTGATGGTAGT+AGG | - | chr5_1:3277861-3277880 | None:intergenic | 35.0% |
| ! | GAAGATACTTGATTTGAAGG+TGG | - | chr5_1:3278006-3278025 | None:intergenic | 35.0% |
| TGAGTGACTGAATAAGAGAA+TGG | - | chr5_1:3278089-3278108 | None:intergenic | 35.0% | |
| !! | AGATCTAGCTAGTTCTACAT+TGG | - | chr5_1:3278198-3278217 | None:intergenic | 35.0% |
| TAGAACTAGCTAGATCTGAT+AGG | + | chr5_1:3278201-3278220 | Msa0711400:intron | 35.0% | |
| AGAACTAGCTAGATCTGATA+GGG | + | chr5_1:3278202-3278221 | Msa0711400:intron | 35.0% | |
| ACACACTTACGAGATTGTTT+AGG | + | chr5_1:3278564-3278583 | Msa0711400:intron | 35.0% | |
| TTATTCCCATAAGCTTTCCT+GGG | + | chr5_1:3278634-3278653 | Msa0711400:intron | 35.0% | |
| TTGAGTGAATCTATCTCTCT+TGG | + | chr5_1:3278829-3278848 | Msa0711400:intron | 35.0% | |
| TGAGGAAGATGATCTTTATC+AGG | + | chr5_1:3278956-3278975 | Msa0711400:CDS | 35.0% | |
| GAGGAAGATGATCTTTATCA+GGG | + | chr5_1:3278957-3278976 | Msa0711400:CDS | 35.0% | |
| ATGTCAAGTTCAATGATGTG+CGG | - | chr5_1:3278995-3279014 | None:intergenic | 35.0% | |
| ! | TACAAGGTTGATTCTTGAAC+TGG | - | chr5_1:3279067-3279086 | None:intergenic | 35.0% |
| TCTTCATAGTTGGGTAATTG+AGG | - | chr5_1:3279128-3279147 | None:intergenic | 35.0% | |
| AATATTTCCAACACAAGGGA+TGG | + | chr5_1:3279170-3279189 | Msa0711400:CDS | 35.0% | |
| AAATTAGAGAGGACAATGTC+CGG | - | chr5_1:3279230-3279249 | None:intergenic | 35.0% | |
| GAGATTTCGTGAAATTAGAG+AGG | - | chr5_1:3279241-3279260 | None:intergenic | 35.0% | |
| GACTCAAAGTTTACTGGAAT+TGG | + | chr5_1:3279281-3279300 | Msa0711400:CDS | 35.0% | |
| AAGTTTACTGGAATTGGGAT+TGG | + | chr5_1:3279287-3279306 | Msa0711400:CDS | 35.0% | |
| ! | GCAGTAAACCAATCCAATTT+TGG | - | chr5_1:3279423-3279442 | None:intergenic | 35.0% |
| TATAAGCCTATATGGTAGCT+TGG | - | chr5_1:3279541-3279560 | None:intergenic | 35.0% | |
| !! | TGTTTTTCAGTGAAGCATAG+AGG | + | chr5_1:3279606-3279625 | Msa0711400:three_prime_UTR | 35.0% |
| !! | GTTTTTCAGTGAAGCATAGA+GGG | + | chr5_1:3279607-3279626 | Msa0711400:three_prime_UTR | 35.0% |
| TTCCTTCTATTCTTCTTCTC+TGG | - | chr5_1:3279678-3279697 | None:intergenic | 35.0% | |
| ATGTGTCGAGAAAAACATCG+AGG | - | chr5_1:3277803-3277822 | None:intergenic | 40.0% | |
| TTCTCGACACATCTTATGCA+TGG | + | chr5_1:3277811-3277830 | Msa0711400:five_prime_UTR | 40.0% | |
| AAACACAGCCAAAACACTGT+CGG | + | chr5_1:3277896-3277915 | Msa0711400:five_prime_UTR | 40.0% | |
| GAACTAGCTAGATCTGATAG+GGG | + | chr5_1:3278203-3278222 | Msa0711400:intron | 40.0% | |
| CTTATTCCCATAAGCTTTCC+TGG | + | chr5_1:3278633-3278652 | Msa0711400:intron | 40.0% | |
| AGTTACCCAGGAAAGCTTAT+GGG | - | chr5_1:3278642-3278661 | None:intergenic | 40.0% | |
| TAGTTACCCAGGAAAGCTTA+TGG | - | chr5_1:3278643-3278662 | None:intergenic | 40.0% | |
| AGTGAATCTATCTCTCTTGG+TGG | + | chr5_1:3278832-3278851 | Msa0711400:intron | 40.0% | |
| CAACCTTGTACAAATACCAC+AGG | + | chr5_1:3279077-3279096 | Msa0711400:CDS | 40.0% | |
| !! | GGATTGGTTCCGAAGATAAT+TGG | + | chr5_1:3279303-3279322 | Msa0711400:CDS | 40.0% |
| ! | AGTGATGACGAGACTTCTAA+TGG | + | chr5_1:3279383-3279402 | Msa0711400:CDS | 40.0% |
| TGCTCATTGCTCTTGTTAGT+TGG | + | chr5_1:3279440-3279459 | Msa0711400:CDS | 40.0% | |
| !! | ATTATCCTGTTTTGAGCGTG+AGG | + | chr5_1:3279467-3279486 | Msa0711400:exon | 40.0% |
| AGGCTTATACTATCACTGTC+TGG | + | chr5_1:3279552-3279571 | Msa0711400:three_prime_UTR | 40.0% | |
| GGCTTATACTATCACTGTCT+GGG | + | chr5_1:3279553-3279572 | Msa0711400:three_prime_UTR | 40.0% | |
| TACTATCACTGTCTGGGAAA+CGG | + | chr5_1:3279559-3279578 | Msa0711400:three_prime_UTR | 40.0% | |
| TGCCAGAGAAGAAGAATAGA+AGG | + | chr5_1:3279673-3279692 | Msa0711400:three_prime_UTR | 40.0% | |
| ATGTGTCGAGAAAAACATCG+AGG | - | chr5_1:3277803-3277822 | None:intergenic | 40.0% | |
| TTCTCGACACATCTTATGCA+TGG | + | chr5_1:3277811-3277830 | Msa0711400:five_prime_UTR | 40.0% | |
| AAACACAGCCAAAACACTGT+CGG | + | chr5_1:3277896-3277915 | Msa0711400:five_prime_UTR | 40.0% | |
| GAACTAGCTAGATCTGATAG+GGG | + | chr5_1:3278203-3278222 | Msa0711400:intron | 40.0% | |
| CTTATTCCCATAAGCTTTCC+TGG | + | chr5_1:3278633-3278652 | Msa0711400:intron | 40.0% | |
| AGTTACCCAGGAAAGCTTAT+GGG | - | chr5_1:3278642-3278661 | None:intergenic | 40.0% | |
| TAGTTACCCAGGAAAGCTTA+TGG | - | chr5_1:3278643-3278662 | None:intergenic | 40.0% | |
| AGTGAATCTATCTCTCTTGG+TGG | + | chr5_1:3278832-3278851 | Msa0711400:intron | 40.0% | |
| CAACCTTGTACAAATACCAC+AGG | + | chr5_1:3279077-3279096 | Msa0711400:CDS | 40.0% | |
| !! | GGATTGGTTCCGAAGATAAT+TGG | + | chr5_1:3279303-3279322 | Msa0711400:CDS | 40.0% |
| ! | AGTGATGACGAGACTTCTAA+TGG | + | chr5_1:3279383-3279402 | Msa0711400:CDS | 40.0% |
| TGCTCATTGCTCTTGTTAGT+TGG | + | chr5_1:3279440-3279459 | Msa0711400:CDS | 40.0% | |
| !! | ATTATCCTGTTTTGAGCGTG+AGG | + | chr5_1:3279467-3279486 | Msa0711400:exon | 40.0% |
| AGGCTTATACTATCACTGTC+TGG | + | chr5_1:3279552-3279571 | Msa0711400:three_prime_UTR | 40.0% | |
| GGCTTATACTATCACTGTCT+GGG | + | chr5_1:3279553-3279572 | Msa0711400:three_prime_UTR | 40.0% | |
| TACTATCACTGTCTGGGAAA+CGG | + | chr5_1:3279559-3279578 | Msa0711400:three_prime_UTR | 40.0% | |
| TGCCAGAGAAGAAGAATAGA+AGG | + | chr5_1:3279673-3279692 | Msa0711400:three_prime_UTR | 40.0% | |
| !!! | CAGTGTTTTGGCTGTGTTTC+AGG | - | chr5_1:3277895-3277914 | None:intergenic | 45.0% |
| CACTCAGTTCATTGTGACCA+TGG | + | chr5_1:3278103-3278122 | Msa0711400:CDS | 45.0% | |
| AGCGATAAGATCAGCGAATC+TGG | + | chr5_1:3278465-3278484 | Msa0711400:intron | 45.0% | |
| ! | ATCTATCTCTCTTGGTGGAC+TGG | + | chr5_1:3278837-3278856 | Msa0711400:intron | 45.0% |
| GGGGATGTTAAGGTAAGTAC+AGG | - | chr5_1:3278929-3278948 | None:intergenic | 45.0% | |
| ATCATCTTCCTCATCTGCAG+GGG | - | chr5_1:3278949-3278968 | None:intergenic | 45.0% | |
| GATCATCTTCCTCATCTGCA+GGG | - | chr5_1:3278950-3278969 | None:intergenic | 45.0% | |
| AGATCATCTTCCTCATCTGC+AGG | - | chr5_1:3278951-3278970 | None:intergenic | 45.0% | |
| GCACCTGTGGTATTTGTACA+AGG | - | chr5_1:3279083-3279102 | None:intergenic | 45.0% | |
| TGGTATTGTGTTAGCACCTG+TGG | - | chr5_1:3279096-3279115 | None:intergenic | 45.0% | |
| ACAGGTGCTAACACAATACC+AGG | + | chr5_1:3279095-3279114 | Msa0711400:CDS | 45.0% | |
| TACAGATCCATCCCTTGTGT+TGG | - | chr5_1:3279180-3279199 | None:intergenic | 45.0% | |
| TTGACCACAAGCACTTCTGA+CGG | + | chr5_1:3279338-3279357 | Msa0711400:CDS | 45.0% | |
| TCGTCATCACTAGAACTCTC+GGG | - | chr5_1:3279374-3279393 | None:intergenic | 45.0% | |
| CTCGTCATCACTAGAACTCT+CGG | - | chr5_1:3279375-3279394 | None:intergenic | 45.0% | |
| ACTATCACTGTCTGGGAAAC+GGG | + | chr5_1:3279560-3279579 | Msa0711400:three_prime_UTR | 45.0% | |
| CGGGAAACTGCAAATAGTGA+TGG | + | chr5_1:3279579-3279598 | Msa0711400:three_prime_UTR | 45.0% | |
| !!! | CAGTGTTTTGGCTGTGTTTC+AGG | - | chr5_1:3277895-3277914 | None:intergenic | 45.0% |
| CACTCAGTTCATTGTGACCA+TGG | + | chr5_1:3278103-3278122 | Msa0711400:CDS | 45.0% | |
| AGCGATAAGATCAGCGAATC+TGG | + | chr5_1:3278465-3278484 | Msa0711400:intron | 45.0% | |
| ! | ATCTATCTCTCTTGGTGGAC+TGG | + | chr5_1:3278837-3278856 | Msa0711400:intron | 45.0% |
| GGGGATGTTAAGGTAAGTAC+AGG | - | chr5_1:3278929-3278948 | None:intergenic | 45.0% | |
| ATCATCTTCCTCATCTGCAG+GGG | - | chr5_1:3278949-3278968 | None:intergenic | 45.0% | |
| GATCATCTTCCTCATCTGCA+GGG | - | chr5_1:3278950-3278969 | None:intergenic | 45.0% | |
| AGATCATCTTCCTCATCTGC+AGG | - | chr5_1:3278951-3278970 | None:intergenic | 45.0% | |
| GCACCTGTGGTATTTGTACA+AGG | - | chr5_1:3279083-3279102 | None:intergenic | 45.0% | |
| TGGTATTGTGTTAGCACCTG+TGG | - | chr5_1:3279096-3279115 | None:intergenic | 45.0% | |
| ACAGGTGCTAACACAATACC+AGG | + | chr5_1:3279095-3279114 | Msa0711400:CDS | 45.0% | |
| TACAGATCCATCCCTTGTGT+TGG | - | chr5_1:3279180-3279199 | None:intergenic | 45.0% | |
| TTGACCACAAGCACTTCTGA+CGG | + | chr5_1:3279338-3279357 | Msa0711400:CDS | 45.0% | |
| TCGTCATCACTAGAACTCTC+GGG | - | chr5_1:3279374-3279393 | None:intergenic | 45.0% | |
| CTCGTCATCACTAGAACTCT+CGG | - | chr5_1:3279375-3279394 | None:intergenic | 45.0% | |
| ACTATCACTGTCTGGGAAAC+GGG | + | chr5_1:3279560-3279579 | Msa0711400:three_prime_UTR | 45.0% | |
| CGGGAAACTGCAAATAGTGA+TGG | + | chr5_1:3279579-3279598 | Msa0711400:three_prime_UTR | 45.0% | |
| GGACTGGATCAAGCACAAGT+TGG | + | chr5_1:3278853-3278872 | Msa0711400:intron | 50.0% | |
| TCATCTGCAGGGGGATGTTA+AGG | - | chr5_1:3278939-3278958 | None:intergenic | 50.0% | |
| TTAACATCCCCCTGCAGATG+AGG | + | chr5_1:3278938-3278957 | Msa0711400:intron | 50.0% | |
| TCATCTTCCTCATCTGCAGG+GGG | - | chr5_1:3278948-3278967 | None:intergenic | 50.0% | |
| GGTAATTGAGGCTCAGTACC+TGG | - | chr5_1:3279116-3279135 | None:intergenic | 50.0% | |
| GTAATGCCTGCTTGTGTTCC+TGG | + | chr5_1:3279197-3279216 | Msa0711400:CDS | 50.0% | |
| !! | TTGTGTTCCTGGCCTTGTTC+CGG | + | chr5_1:3279208-3279227 | Msa0711400:CDS | 50.0% |
| AGAGGACAATGTCCGGAACA+AGG | - | chr5_1:3279223-3279242 | None:intergenic | 50.0% | |
| AGCATCCTCACGCTCAAAAC+AGG | - | chr5_1:3279475-3279494 | None:intergenic | 50.0% | |
| TTGCAGCATAGTCGGTAAGC+AGG | + | chr5_1:3279515-3279534 | Msa0711400:three_prime_UTR | 50.0% | |
| AGCAGGCCAAGCTACCATAT+AGG | + | chr5_1:3279532-3279551 | Msa0711400:three_prime_UTR | 50.0% | |
| GGACTGGATCAAGCACAAGT+TGG | + | chr5_1:3278853-3278872 | Msa0711400:intron | 50.0% | |
| TCATCTGCAGGGGGATGTTA+AGG | - | chr5_1:3278939-3278958 | None:intergenic | 50.0% | |
| TTAACATCCCCCTGCAGATG+AGG | + | chr5_1:3278938-3278957 | Msa0711400:intron | 50.0% | |
| TCATCTTCCTCATCTGCAGG+GGG | - | chr5_1:3278948-3278967 | None:intergenic | 50.0% | |
| GGTAATTGAGGCTCAGTACC+TGG | - | chr5_1:3279116-3279135 | None:intergenic | 50.0% | |
| GTAATGCCTGCTTGTGTTCC+TGG | + | chr5_1:3279197-3279216 | Msa0711400:CDS | 50.0% | |
| !! | TTGTGTTCCTGGCCTTGTTC+CGG | + | chr5_1:3279208-3279227 | Msa0711400:CDS | 50.0% |
| AGAGGACAATGTCCGGAACA+AGG | - | chr5_1:3279223-3279242 | None:intergenic | 50.0% | |
| AGCATCCTCACGCTCAAAAC+AGG | - | chr5_1:3279475-3279494 | None:intergenic | 50.0% | |
| TTGCAGCATAGTCGGTAAGC+AGG | + | chr5_1:3279515-3279534 | Msa0711400:three_prime_UTR | 50.0% | |
| AGCAGGCCAAGCTACCATAT+AGG | + | chr5_1:3279532-3279551 | Msa0711400:three_prime_UTR | 50.0% | |
| !! | CACGTGCACCGACAGTGTTT+TGG | - | chr5_1:3277907-3277926 | None:intergenic | 55.0% |
| ACAAGGCCAGGAACACAAGC+AGG | - | chr5_1:3279206-3279225 | None:intergenic | 55.0% | |
| ACAATGTCCGGAACAAGGCC+AGG | - | chr5_1:3279218-3279237 | None:intergenic | 55.0% | |
| !! | GCTTCCGTCAGAAGTGCTTG+TGG | - | chr5_1:3279345-3279364 | None:intergenic | 55.0% |
| !! | CACGTGCACCGACAGTGTTT+TGG | - | chr5_1:3277907-3277926 | None:intergenic | 55.0% |
| ACAAGGCCAGGAACACAAGC+AGG | - | chr5_1:3279206-3279225 | None:intergenic | 55.0% | |
| ACAATGTCCGGAACAAGGCC+AGG | - | chr5_1:3279218-3279237 | None:intergenic | 55.0% | |
| !! | GCTTCCGTCAGAAGTGCTTG+TGG | - | chr5_1:3279345-3279364 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 3277747 | 3279864 | 3277747 | ID=Msa0711400;Name=Msa0711400 |
| chr5_1 | mRNA | 3277747 | 3279864 | 3277747 | ID=Msa0711400-mRNA-1;Parent=Msa0711400;Name=Msa0711400-mRNA-1;_AED=0.06;_eAED=0.06;_QI=299|1|1|1|0|0.5|2|383|201 |
| chr5_1 | exon | 3277747 | 3278124 | 3277747 | ID=Msa0711400-mRNA-1:exon:1178;Parent=Msa0711400-mRNA-1 |
| chr5_1 | exon | 3278955 | 3279864 | 3278955 | ID=Msa0711400-mRNA-1:exon:1179;Parent=Msa0711400-mRNA-1 |
| chr5_1 | five_prime_UTR | 3277747 | 3278045 | 3277747 | ID=Msa0711400-mRNA-1:five_prime_utr;Parent=Msa0711400-mRNA-1 |
| chr5_1 | CDS | 3278046 | 3278124 | 3278046 | ID=Msa0711400-mRNA-1:cds;Parent=Msa0711400-mRNA-1 |
| chr5_1 | CDS | 3278955 | 3279481 | 3278955 | ID=Msa0711400-mRNA-1:cds;Parent=Msa0711400-mRNA-1 |
| chr5_1 | three_prime_UTR | 3279482 | 3279864 | 3279482 | ID=Msa0711400-mRNA-1:three_prime_utr;Parent=Msa0711400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
