AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0626490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626490 MtrunA17_Chr4g0002361 99.045 419 4 0 1 419 1 419 0.0 857
Msa0626490 MtrunA17_Chr2g0298881 52.247 356 167 3 65 419 13 366 1.12e-137 398
Msa0626490 MtrunA17_Chr5g0399311 28.739 341 197 12 84 389 122 451 3.95e-27 113
Msa0626490 MtrunA17_Chr3g0143821 27.714 350 201 11 78 389 103 438 8.58e-27 112
Msa0626490 MtrunA17_Chr5g0424241 27.011 348 204 9 87 389 158 500 3.53e-26 110
Msa0626490 MtrunA17_Chr4g0042711 26.023 342 203 12 86 388 97 427 1.66e-24 105
Msa0626490 MtrunA17_Chr5g0417871 27.190 331 192 14 86 378 85 404 1.67e-24 105
Msa0626490 MtrunA17_Chr4g0056061 27.729 339 199 12 86 389 108 435 1.68e-24 105
Msa0626490 MtrunA17_Chr3g0129981 27.548 363 195 15 63 378 89 430 2.71e-24 105
Msa0626490 MtrunA17_Chr3g0132951 25.469 373 207 13 72 378 85 452 5.28e-24 103
Msa0626490 MtrunA17_Chr4g0061781 26.050 357 212 15 71 387 103 447 9.04e-24 103
Msa0626490 MtrunA17_Chr5g0426591 25.442 452 248 19 5 389 12 441 1.04e-23 103
Msa0626490 MtrunA17_Chr1g0160781 23.575 386 237 11 63 396 125 504 1.55e-23 102
Msa0626490 MtrunA17_Chr2g0307971 25.356 351 200 14 83 387 112 446 7.24e-22 97.8
Msa0626490 MtrunA17_Chr3g0123521 23.002 413 257 13 48 407 104 508 1.21e-21 97.1
Msa0626490 MtrunA17_Chr3g0087291 25.272 368 206 15 72 389 153 501 4.25e-21 95.5
Msa0626490 MtrunA17_Chr5g0412251 24.444 360 202 12 84 378 84 438 4.46e-21 95.1
Msa0626490 MtrunA17_Chr4g0003561 25.434 346 222 9 70 387 56 393 3.75e-20 92.0
Msa0626490 MtrunA17_Chr4g0043911 23.580 352 220 8 70 378 135 480 6.32e-20 92.0
Msa0626490 MtrunA17_Chr3g0077321 24.576 354 216 10 70 378 130 477 6.33e-20 92.0
Msa0626490 MtrunA17_Chr4g0010511 24.259 371 225 12 63 389 203 561 2.32e-19 90.5
Msa0626490 MtrunA17_Chr3g0132371 24.185 368 215 14 63 384 116 465 3.23e-19 89.7
Msa0626490 MtrunA17_Chr1g0204121 22.449 392 238 16 63 402 62 439 1.69e-17 84.3
Msa0626490 MtrunA17_Chr7g0220381 25.271 277 144 8 81 306 93 357 6.50e-16 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626490 AT3G21190.1 63.208 424 149 3 1 419 1 422 0.0 561
Msa0626490 AT1G51630.1 61.882 425 154 4 1 419 1 423 0.0 553
Msa0626490 AT1G38065.2 26.648 349 206 9 86 389 26 369 1.63e-27 114
Msa0626490 AT1G38065.1 26.648 349 206 9 86 389 36 379 1.88e-27 114
Msa0626490 AT1G38131.1 26.648 349 206 9 86 389 155 498 3.47e-27 114
Msa0626490 AT5G64600.1 27.586 406 231 14 26 389 60 444 7.49e-27 112
Msa0626490 AT1G20550.1 27.520 367 215 13 78 411 101 449 2.55e-25 108
Msa0626490 AT1G76270.1 28.529 340 200 12 83 389 103 432 7.38e-25 107
Msa0626490 AT4G38390.1 26.239 343 210 10 81 389 118 451 3.65e-23 102
Msa0626490 AT4G16650.2 28.446 341 198 11 84 389 120 449 5.33e-22 98.6
Msa0626490 AT4G16650.1 28.446 341 198 11 84 389 120 449 5.33e-22 98.6
Msa0626490 AT3G26370.1 23.430 414 256 12 48 408 112 517 8.42e-22 98.2
Msa0626490 AT3G02250.1 25.287 348 198 14 83 384 103 434 1.72e-20 94.0
Msa0626490 AT5G65470.1 23.177 384 223 13 63 378 60 439 3.04e-20 93.2
Msa0626490 AT1G35510.1 24.791 359 221 9 64 378 136 489 6.93e-20 92.4
Msa0626490 AT5G15740.1 24.629 337 206 13 87 384 107 434 8.31e-20 92.0
Msa0626490 AT2G03280.1 25.000 340 208 12 86 387 88 418 1.02e-19 91.7
Msa0626490 AT1G04910.1 24.074 378 229 14 75 413 81 439 1.53e-19 91.3
Msa0626490 AT5G63390.1 23.775 408 236 16 63 412 134 524 4.31e-19 90.1
Msa0626490 AT2G01480.2 21.564 422 274 10 8 378 69 484 5.62e-17 83.2
Msa0626490 AT2G01480.1 21.564 422 274 10 8 378 69 484 1.10e-16 82.4
Msa0626490 AT1G14970.1 22.198 464 296 14 8 412 70 527 3.41e-16 80.9
Msa0626490 AT1G14970.2 23.077 403 251 12 63 412 11 407 4.14e-16 80.5
Msa0626490 AT2G03280.2 23.433 367 207 13 86 387 88 445 7.25e-16 79.7
Msa0626490 AT2G37980.1 23.097 381 245 15 45 389 185 553 2.76e-14 75.1
Msa0626490 AT3G26370.2 24.138 232 157 6 48 263 112 340 5.75e-14 73.6
Msa0626490 AT5G01100.1 21.467 368 233 12 63 389 191 543 1.60e-13 72.8

Find 108 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAGGCTATTCACATATT+TGG 0.137783 4_3:-6076945 Msa0626490:three_prime_UTR
GTTCCTCTAAAACAAGAAAA+TGG 0.179635 4_3:-6080632 Msa0626490:exon
ATATTTGGCTTGTAAAATTA+TGG 0.193967 4_3:-6076930 Msa0626490:three_prime_UTR
TTTCCCTTTGATCTATAAAT+TGG 0.210218 4_3:+6078138 None:intergenic
CTCATTAAGAACAAGAATTA+TGG 0.238157 4_3:+6076902 None:intergenic
GAAAGTCCAGGTAGGATATT+AGG 0.263198 4_3:-6080773 Msa0626490:five_prime_UTR
TTCTGGTAAAACACAAATAT+TGG 0.269941 4_3:-6077220 Msa0626490:CDS
CTTAGCAATGTATGGAAGTT+TGG 0.306231 4_3:-6078037 Msa0626490:CDS
ATTCAGAATCTTTAGAATCT+AGG 0.306927 4_3:+6077343 None:intergenic
TACAAGGATAATAAATTTCC+AGG 0.315137 4_3:-6079464 Msa0626490:intron
TAATCTTCGGTAACCCGGTT+AGG 0.354107 4_3:+6078180 None:intergenic
GACTTTCTCATGTTTATTGA+AGG 0.356575 4_3:+6078093 None:intergenic
TCGACAAGATCATGTATTTC+CGG 0.357773 4_3:+6078006 None:intergenic
ACACATGTAAGAAAGAATAT+AGG 0.360475 4_3:-6079398 Msa0626490:CDS
TTACTTGAACAGAATCAAAA+TGG 0.369726 4_3:+6080530 None:intergenic
CTGCTGTGAAGGTCCCTAAC+CGG 0.377281 4_3:-6078194 Msa0626490:CDS
ATGCGAACGTAGCTGGTAAA+AGG 0.377684 4_3:-6077248 Msa0626490:CDS
TCAATAAACATGAGAAAGTC+AGG 0.380362 4_3:-6078090 Msa0626490:CDS
CACATGTAAGAAAGAATATA+GGG 0.382191 4_3:-6079397 Msa0626490:CDS
TGATAGCCTTGATTCTCTTA+AGG 0.386325 4_3:-6077764 Msa0626490:CDS
CATCATTATCATCATTTCCT+TGG 0.387233 4_3:+6077887 None:intergenic
GTTGAGATGTTGAACAAGAA+AGG 0.397949 4_3:-6077913 Msa0626490:CDS
GAGAAAGATTGGTATTGATA+AGG 0.398684 4_3:-6077821 Msa0626490:CDS
AGATTCTAAAGATTCTGAAT+TGG 0.399183 4_3:-6077340 Msa0626490:CDS
GATACTGCATTCATTGACTT+TGG 0.403790 4_3:-6076869 Msa0626490:three_prime_UTR
TAAGAAAGAATATAGGGCTT+TGG 0.414895 4_3:-6079391 Msa0626490:CDS
ATTGCATGCTTAGCAATGTA+TGG 0.415033 4_3:-6078045 Msa0626490:CDS
AGATAAACATTCATCCCAAT+GGG 0.424741 4_3:-6076825 Msa0626490:three_prime_UTR
TTCCTCTAAAACAAGAAAAT+GGG 0.425792 4_3:-6080631 Msa0626490:exon
AATCTCTTGTGCATTGAAAC+AGG 0.427632 4_3:+6077855 None:intergenic
GATTTGAGACAAGTAGTTGC+TGG 0.437086 4_3:-6080604 Msa0626490:CDS
GGTTGGCTTCCTCTAATGTC+AGG 0.452126 4_3:+6078471 None:intergenic
TTGAATGGTTTACCTGAGAT+AGG 0.452979 4_3:+6079147 None:intergenic
CTATTGTATGCGAACGTAGC+TGG 0.454060 4_3:-6077255 Msa0626490:CDS
CCGTGTTGGGTTAAGCCGTC+TGG 0.456324 4_3:-6079344 Msa0626490:CDS
GCTGGTAAAAGGATCGGTTC+TGG 0.458320 4_3:-6077237 Msa0626490:CDS
TACACTAAGTCAACCCCATT+GGG 0.462494 4_3:+6076811 None:intergenic
CTTGTGATCCCTGACATTAG+AGG 0.462574 4_3:-6078480 Msa0626490:CDS
AGCCGATGAATCTGAAATTA+CGG 0.462609 4_3:+6077191 None:intergenic
TGGACCATTGGTTAATGAAA+AGG 0.468674 4_3:+6079178 None:intergenic
TACAATAGACCCGAAATTGC+TGG 0.469638 4_3:+6077270 None:intergenic
CAATTTATTTGACACAATCA+AGG 0.470225 4_3:-6077792 Msa0626490:CDS
AACTTTGTCTTCTTATCCGC+CGG 0.478466 4_3:+6077366 None:intergenic
TGACGAGTTAAAACCGTGTT+GGG 0.478923 4_3:-6079357 Msa0626490:CDS
CGAACCAATTTATAGATCAA+AGG 0.484845 4_3:-6078142 Msa0626490:CDS
GAACCAATTTATAGATCAAA+GGG 0.484926 4_3:-6078141 Msa0626490:CDS
GTTGCATCATCTGTTGATCC+TGG 0.495630 4_3:+6079446 None:intergenic
CTATGTAATCTTCGGTAACC+CGG 0.496129 4_3:+6078175 None:intergenic
ACATGATCTTGTCGACTCAA+TGG 0.503901 4_3:-6077998 Msa0626490:CDS
AGCCGTAATTTCAGATTCAT+CGG 0.504226 4_3:-6077193 Msa0626490:CDS
TAGATAAACATTCATCCCAA+TGG 0.504319 4_3:-6076826 Msa0626490:three_prime_UTR
GACATTAGAGGAAGCCAACC+TGG 0.505026 4_3:-6078468 Msa0626490:CDS
AATCTTCGGTAACCCGGTTA+GGG 0.507255 4_3:+6078181 None:intergenic
AGACGGTCAATTTATTGCTG+TGG 0.514073 4_3:-6077944 Msa0626490:CDS
TGGAAGTTTGGAGTTGCAGC+CGG 0.514488 4_3:-6078025 Msa0626490:CDS
AAAAGAAAAGAAGAAAGTCC+AGG 0.521014 4_3:-6080785 None:intergenic
TTGTCGACTCAATGGTTGAA+AGG 0.530466 4_3:-6077990 Msa0626490:CDS
AACCTATGAAAATGTAAAGA+TGG 0.530585 4_3:-6079426 Msa0626490:CDS
GTAATTGTGGCTAGATATCT+CGG 0.530926 4_3:-6078510 Msa0626490:CDS
TTCATGTCTCAGGAACTTTG+AGG 0.534152 4_3:-6078310 Msa0626490:intron
AAAGAATATAGGGCTTTGGA+AGG 0.536631 4_3:-6079387 Msa0626490:CDS
TGCTGTGAAGGTCCCTAACC+GGG 0.540265 4_3:-6078193 Msa0626490:CDS
GTGTCGAGCTATGTAATCTT+CGG 0.540315 4_3:+6078167 None:intergenic
ATCTGCAAACAAAAGACCTT+AGG 0.545962 4_3:+6077044 None:intergenic
GATGAATCTGAAATTACGGC+TGG 0.551992 4_3:+6077195 None:intergenic
TCCAGAGTACCACCTATCTC+AGG 0.558813 4_3:-6079159 Msa0626490:intron
ATACACTAAGTCAACCCCAT+TGG 0.560052 4_3:+6076810 None:intergenic
ACCTGAGATAGGTGGTACTC+TGG 0.562659 4_3:+6079158 None:intergenic
CAAGGAAATGATGATAATGA+TGG 0.567082 4_3:-6077886 Msa0626490:CDS
TAGGTGGTACTCTGGACCAT+TGG 0.568629 4_3:+6079166 None:intergenic
ACAGGTCCTTAAGAGAATCA+AGG 0.568795 4_3:+6077758 None:intergenic
GATAGCAGATGCAGTAATTG+TGG 0.569998 4_3:-6078523 Msa0626490:CDS
CTGACGAGTTAAAACCGTGT+TGG 0.574512 4_3:-6079358 Msa0626490:CDS
TTATTTGACACAATCAAGGT+GGG 0.575583 4_3:-6077788 Msa0626490:CDS
GACGAAGTGGAGCAGACAGA+CGG 0.578720 4_3:-6079209 Msa0626490:CDS
GTTGGCTTCCTCTAATGTCA+GGG 0.580467 4_3:+6078472 None:intergenic
ACGAAGTGGAGCAGACAGAC+GGG 0.590735 4_3:-6079208 Msa0626490:CDS
AACGTAGCTGGTAAAAGGAT+CGG 0.594479 4_3:-6077243 Msa0626490:CDS
CATGAAAAGCATGGAAGGAG+TGG 0.595034 4_3:-6078265 Msa0626490:CDS
TCGATGGTTGGCAGACGAAG+TGG 0.598053 4_3:-6079222 Msa0626490:intron
GTGTTCATGAAAAGCATGGA+AGG 0.599368 4_3:-6078270 Msa0626490:CDS
GTTCTTCCTAATATCCTACC+TGG 0.600567 4_3:+6080767 None:intergenic
ATACATTGCTAAGCATGCAA+TGG 0.603322 4_3:+6078047 None:intergenic
AGAACTAACCTCTTGTCACC+AGG 0.607111 4_3:+6078450 None:intergenic
TTGAACAAGAAAGGTTGCCA+AGG 0.610391 4_3:-6077904 Msa0626490:CDS
CTAACCTCTTGTCACCAGGT+TGG 0.610952 4_3:+6078454 None:intergenic
AATTTAATATTACCTCCAGA+CGG 0.612585 4_3:+6079329 None:intergenic
ATAGATCAAAGGGAAACGTA+AGG 0.616496 4_3:-6078131 Msa0626490:CDS
TTTATTTGACACAATCAAGG+TGG 0.619794 4_3:-6077789 Msa0626490:CDS
ATTTAACATGTATGTACACA+AGG 0.622676 4_3:-6076961 Msa0626490:three_prime_UTR
GTTGCAGGAGTCAATCATGC+CGG 0.628375 4_3:-6077385 Msa0626490:intron
AAGAATATAGGGCTTTGGAA+GGG 0.632512 4_3:-6079386 Msa0626490:CDS
TAACAAACATAGTGAGAGTG+AGG 0.633154 4_3:+6080578 None:intergenic
GAAAAGAAGAAAGTCCAGGT+AGG 0.640973 4_3:-6080781 Msa0626490:five_prime_UTR
AATAACAAGAATATGCAAAG+TGG 0.644534 4_3:+6077127 None:intergenic
ATCATTGTCAGTGAAAGTGT+CGG 0.644659 4_3:-6080744 Msa0626490:five_prime_UTR
GAAGCCAACCTGGTGACAAG+AGG 0.647434 4_3:-6078458 Msa0626490:intron
CAATAAACATGAGAAAGTCA+GGG 0.649727 4_3:-6078089 Msa0626490:CDS
TGTTGGGTTAAGCCGTCTGG+AGG 0.656915 4_3:-6079341 Msa0626490:intron
CATGGAAGGAGTGGTCAAAG+TGG 0.657662 4_3:-6078256 Msa0626490:CDS
GTTTCCTAAAACTTACACGA+AGG 0.660480 4_3:-6077737 Msa0626490:intron
TGACGTGTTCATGAAAAGCA+TGG 0.665989 4_3:-6078274 Msa0626490:CDS
ACTTTAAGCCGAAAATCAGA+CGG 0.668948 4_3:-6077961 Msa0626490:CDS
AATGGTTTACCTGAGATAGG+TGG 0.671281 4_3:+6079150 None:intergenic
GCAGGAGTCAATCATGCCGG+CGG 0.677301 4_3:-6077382 Msa0626490:intron
TGATTGTGTCAAATAAATTG+TGG 0.680581 4_3:+6077795 None:intergenic
CCAGACGGCTTAACCCAACA+CGG 0.681147 4_3:+6079344 None:intergenic
GATAAACATTCATCCCAATG+GGG 0.743943 4_3:-6076824 Msa0626490:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTGACTTTTTATATAT+AGG - chr4_3:6077493-6077512 Msa0626490:intron 10.0%
!! TTTGGATAAAAATGAAAAAT+GGG + chr4_3:6077063-6077082 None:intergenic 15.0%
!! TTTGTTCATAACAAAAAAAA+TGG + chr4_3:6077180-6077199 None:intergenic 15.0%
!!! AACAAAGTTAGTTAATTTTA+GGG - chr4_3:6077194-6077213 Msa0626490:CDS 15.0%
!!! AAATGAATTTTAACTTTCAA+AGG - chr4_3:6077251-6077270 Msa0626490:CDS 15.0%
!!! GTCAATTATTTGTTTTATAT+AGG + chr4_3:6077447-6077466 None:intergenic 15.0%
!! CTTAGATTGATTAATATATT+CGG + chr4_3:6077883-6077902 None:intergenic 15.0%
!! AAGATAGATATTAGATAAAT+AGG - chr4_3:6077900-6077919 Msa0626490:CDS 15.0%
!! CTTTGGATAAAAATGAAAAA+TGG + chr4_3:6077064-6077083 None:intergenic 20.0%
!! AAAGTGAAAAATTGAAACTT+TGG + chr4_3:6077081-6077100 None:intergenic 20.0%
!! TTTCTATATGAATCTCTTAA+AGG - chr4_3:6077111-6077130 Msa0626490:exon 20.0%
!! TTCTATATGAATCTCTTAAA+GGG - chr4_3:6077112-6077131 Msa0626490:exon 20.0%
!!! GAACAAAGTTAGTTAATTTT+AGG - chr4_3:6077193-6077212 Msa0626490:CDS 20.0%
!!! ACAAAGTTAGTTAATTTTAG+GGG - chr4_3:6077195-6077214 Msa0626490:CDS 20.0%
!!! TTATTTGTTTTATATAGGAC+TGG + chr4_3:6077442-6077461 None:intergenic 20.0%
!!! AACAACAATCTATTTTTATC+GGG + chr4_3:6077813-6077832 None:intergenic 20.0%
!!! GAACAACAATCTATTTTTAT+CGG + chr4_3:6077814-6077833 None:intergenic 20.0%
!! AAGACTAATAAAAACAAATC+CGG + chr4_3:6078019-6078038 None:intergenic 20.0%
!!! ATTAATTCATATTTTGTCGA+TGG - chr4_3:6078327-6078346 Msa0626490:intron 20.0%
!!! CTTCAAGTTTATATCAATTT+TGG + chr4_3:6078633-6078652 None:intergenic 20.0%
!! TAATAGATTCATATTGAAGT+GGG + chr4_3:6078717-6078736 None:intergenic 20.0%
!! TTAATAGATTCATATTGAAG+TGG + chr4_3:6078718-6078737 None:intergenic 20.0%
!! AAATTGTGTTAAATGTAAAG+TGG + chr4_3:6078741-6078760 None:intergenic 20.0%
!! CTTTACATTTAACACAATTT+AGG - chr4_3:6078741-6078760 Msa0626490:intron 20.0%
!! AAAGTAGAGAAAATAAAGAA+TGG + chr4_3:6078968-6078987 None:intergenic 20.0%
!!! ATATTTGGCTTGTAAAATTA+TGG - chr4_3:6080635-6080654 Msa0626490:exon 20.0%
!!! TTCCTCTAAAACAAGAAAAT+GGG - chr4_3:6076934-6076953 Msa0626490:three_prime_UTR 25.0%
!! AATGGTCTCTTTTAATCATA+TGG + chr4_3:6077020-6077039 None:intergenic 25.0%
! TTACTTGAACAGAATCAAAA+TGG + chr4_3:6077038-6077057 None:intergenic 25.0%
!! GAGATATTAATTGTTTGTTG+TGG - chr4_3:6077349-6077368 Msa0626490:CDS 25.0%
! TCATTGAAATGATGATTTGA+AGG - chr4_3:6077383-6077402 Msa0626490:intron 25.0%
!! TGACTTTTTATATATAGGAC+CGG - chr4_3:6077498-6077517 Msa0626490:intron 25.0%
!! ACAAGAAAATGTTTCTGATT+TGG - chr4_3:6077652-6077671 Msa0626490:intron 25.0%
!!! ACAACAATCTATTTTTATCG+GGG + chr4_3:6077812-6077831 None:intergenic 25.0%
! TACAAGGATAATAAATTTCC+AGG - chr4_3:6078101-6078120 Msa0626490:CDS 25.0%
! AACCTATGAAAATGTAAAGA+TGG - chr4_3:6078139-6078158 Msa0626490:CDS 25.0%
!! ATCCATCTTTACATTTTCAT+AGG + chr4_3:6078144-6078163 None:intergenic 25.0%
! ACACATGTAAGAAAGAATAT+AGG - chr4_3:6078167-6078186 Msa0626490:CDS 25.0%
! CACATGTAAGAAAGAATATA+GGG - chr4_3:6078168-6078187 Msa0626490:CDS 25.0%
! AATTTAATATTACCTCCAGA+CGG + chr4_3:6078239-6078258 None:intergenic 25.0%
!! ATCAAAATGAGGATTTTTGT+TGG - chr4_3:6078457-6078476 Msa0626490:intron 25.0%
! ATTAGTGATGTAAGATATTG+CGG - chr4_3:6078481-6078500 Msa0626490:CDS 25.0%
!!! GGTGTCATTATTGTATATTT+AGG - chr4_3:6078568-6078587 Msa0626490:intron 25.0%
! GTCATTATTGTATATTTAGG+TGG - chr4_3:6078571-6078590 Msa0626490:intron 25.0%
!! CAAGTTTATATCAATTTTGG+AGG + chr4_3:6078630-6078649 None:intergenic 25.0%
! GCAAAAAAAGCTTCAAAATA+TGG + chr4_3:6078656-6078675 None:intergenic 25.0%
! TACATTTAACACAATTTAGG+TGG - chr4_3:6078744-6078763 Msa0626490:intron 25.0%
!!! TGAATGAATTGATTTTGTAG+AGG + chr4_3:6078775-6078794 None:intergenic 25.0%
!! AGTCTTTTCATAACTATCAT+TGG + chr4_3:6078860-6078879 None:intergenic 25.0%
!! CAAATTTTACAATACTGCAT+TGG + chr4_3:6078936-6078955 None:intergenic 25.0%
!! TTTATACACCGAATCTTTTA+TGG + chr4_3:6079143-6079162 None:intergenic 25.0%
!! TTTTGCTTATATTTCGTTCT+GGG - chr4_3:6079198-6079217 Msa0626490:CDS 25.0%
!!! TTTTTAGTTGTTACATGAGA+AGG + chr4_3:6079346-6079365 None:intergenic 25.0%
! GAACCAATTTATAGATCAAA+GGG - chr4_3:6079424-6079443 Msa0626490:CDS 25.0%
! TTTCCCTTTGATCTATAAAT+TGG + chr4_3:6079430-6079449 None:intergenic 25.0%
! TGATTGTGTCAAATAAATTG+TGG + chr4_3:6079773-6079792 None:intergenic 25.0%
! CAATTTATTTGACACAATCA+AGG - chr4_3:6079773-6079792 Msa0626490:intron 25.0%
!! TAGTAAATTTGCTTACTTTC+TGG - chr4_3:6080009-6080028 Msa0626490:intron 25.0%
!!! ATTCAGAATCTTTAGAATCT+AGG + chr4_3:6080225-6080244 None:intergenic 25.0%
!! AGATTCTAAAGATTCTGAAT+TGG - chr4_3:6080225-6080244 Msa0626490:intron 25.0%
! TTCTGGTAAAACACAAATAT+TGG - chr4_3:6080345-6080364 Msa0626490:intron 25.0%
! AATAACAAGAATATGCAAAG+TGG + chr4_3:6080441-6080460 None:intergenic 25.0%
!!! TCAAGAGTTACAGTTTTTTT+AGG - chr4_3:6080497-6080516 Msa0626490:intron 25.0%
!!! CAAGAGTTACAGTTTTTTTA+GGG - chr4_3:6080498-6080517 Msa0626490:intron 25.0%
! ATTTAACATGTATGTACACA+AGG - chr4_3:6080604-6080623 Msa0626490:CDS 25.0%
! CTCATTAAGAACAAGAATTA+TGG + chr4_3:6080666-6080685 None:intergenic 25.0%
AGAAGAAGAAAAAGAAGAGA+AGG + chr4_3:6076905-6076924 None:intergenic 30.0%
!! GTTCCTCTAAAACAAGAAAA+TGG - chr4_3:6076933-6076952 Msa0626490:three_prime_UTR 30.0%
!!! AACCCATTTTCTTGTTTTAG+AGG + chr4_3:6076939-6076958 None:intergenic 30.0%
!! AGATCCTTAGTTTTTAGACT+AGG - chr4_3:6077327-6077346 Msa0626490:CDS 30.0%
ATCTCCTAGTCTAAAAACTA+AGG + chr4_3:6077334-6077353 None:intergenic 30.0%
!! TTGTTTTATATAGGACTGGA+GGG + chr4_3:6077438-6077457 None:intergenic 30.0%
!!! TTTGTTTTATATAGGACTGG+AGG + chr4_3:6077439-6077458 None:intergenic 30.0%
! TTTTTATATATAGGACCGGA+GGG - chr4_3:6077502-6077521 Msa0626490:intron 30.0%
!!! GCTCTATGTCTGAATTTTTT+TGG - chr4_3:6077629-6077648 Msa0626490:intron 30.0%
! TTTCTCATCGTATTTTCTCT+CGG - chr4_3:6077958-6077977 Msa0626490:CDS 30.0%
!!! CTCTTTGTTTTTGCTTTACA+AGG - chr4_3:6078085-6078104 Msa0626490:CDS 30.0%
TAAGAAAGAATATAGGGCTT+TGG - chr4_3:6078174-6078193 Msa0626490:CDS 30.0%
! TTAAGTTTTGCAACTTTTCG+AGG - chr4_3:6078259-6078278 Msa0626490:CDS 30.0%
AAATACAATCCAAACGCATA+TGG + chr4_3:6078288-6078307 None:intergenic 30.0%
! ATTCATATTTTGTCGATGGT+TGG - chr4_3:6078331-6078350 Msa0626490:intron 30.0%
! GTTACCTTTTCATTAACCAA+TGG - chr4_3:6078383-6078402 Msa0626490:intron 30.0%
! GTGATTGACTTATCAAAATG+AGG - chr4_3:6078446-6078465 Msa0626490:intron 30.0%
CATCTAAGGGAAAATATCTT+TGG + chr4_3:6078521-6078540 None:intergenic 30.0%
AGAAGAAGGAAATCATCTAA+GGG + chr4_3:6078534-6078553 None:intergenic 30.0%
! AATAATGACACCGTTTCTTT+TGG + chr4_3:6078560-6078579 None:intergenic 30.0%
TGTATATTTAGGTGGATGTT+TGG - chr4_3:6078579-6078598 Msa0626490:intron 30.0%
! TGGGTTGAACAATTAATTTG+AGG + chr4_3:6078698-6078717 None:intergenic 30.0%
!!! TAAGTTTGTGTTTGGTTTTG+CGG + chr4_3:6078814-6078833 None:intergenic 30.0%
ACTACTACTAAGTTTGTGTT+TGG + chr4_3:6078822-6078841 None:intergenic 30.0%
! AGTTCTGACCATAAAAGATT+CGG - chr4_3:6079132-6079151 Msa0626490:intron 30.0%
CACATTCACGATCAATAATT+TGG - chr4_3:6079170-6079189 Msa0626490:CDS 30.0%
! GTTTTGCTTATATTTCGTTC+TGG - chr4_3:6079197-6079216 Msa0626490:CDS 30.0%
TTTGCTTATATTTCGTTCTG+GGG - chr4_3:6079199-6079218 Msa0626490:CDS 30.0%
CCTGAGACATGAATTATATT+AGG + chr4_3:6079248-6079267 None:intergenic 30.0%
CCTAATATAATTCATGTCTC+AGG - chr4_3:6079245-6079264 Msa0626490:intron 30.0%
TAAAAAAATTGCTGCTGTGA+AGG - chr4_3:6079360-6079379 Msa0626490:CDS 30.0%
CGAACCAATTTATAGATCAA+AGG - chr4_3:6079423-6079442 Msa0626490:CDS 30.0%
GACTTTCTCATGTTTATTGA+AGG + chr4_3:6079475-6079494 None:intergenic 30.0%
TCAATAAACATGAGAAAGTC+AGG - chr4_3:6079475-6079494 Msa0626490:intron 30.0%
CAATAAACATGAGAAAGTCA+GGG - chr4_3:6079476-6079495 Msa0626490:intron 30.0%
! TAAATTGACCGTCTGATTTT+CGG + chr4_3:6079615-6079634 None:intergenic 30.0%
CATCATTATCATCATTTCCT+TGG + chr4_3:6079681-6079700 None:intergenic 30.0%
! CAAGGAAATGATGATAATGA+TGG - chr4_3:6079679-6079698 Msa0626490:intron 30.0%
!! GAGAAAGATTGGTATTGATA+AGG - chr4_3:6079744-6079763 Msa0626490:intron 30.0%
TTTATTTGACACAATCAAGG+TGG - chr4_3:6079776-6079795 Msa0626490:intron 30.0%
TTATTTGACACAATCAAGGT+GGG - chr4_3:6079777-6079796 Msa0626490:intron 30.0%
TTTCCTCTTAAAAATGTTGC+AGG - chr4_3:6080165-6080184 Msa0626490:intron 30.0%
!! TGTTTTTGTACCAGCAATTT+CGG - chr4_3:6080285-6080304 Msa0626490:intron 30.0%
! GTTTTTCTTGGAGATATAAG+GGG + chr4_3:6080419-6080438 None:intergenic 30.0%
! GGTTTTTCTTGGAGATATAA+GGG + chr4_3:6080420-6080439 None:intergenic 30.0%
! TGGTTTTTCTTGGAGATATA+AGG + chr4_3:6080421-6080440 None:intergenic 30.0%
! ATATGCAAAGTGGTTTTTCT+TGG + chr4_3:6080431-6080450 None:intergenic 30.0%
TAGATAAACATTCATCCCAA+TGG - chr4_3:6080739-6080758 Msa0626490:five_prime_UTR 30.0%
AGATAAACATTCATCCCAAT+GGG - chr4_3:6080740-6080759 Msa0626490:five_prime_UTR 30.0%
! ATCATTGTCAGTGAAAGTGT+CGG - chr4_3:6076821-6076840 Msa0626490:three_prime_UTR 35.0%
TAACAAACATAGTGAGAGTG+AGG + chr4_3:6076990-6077009 None:intergenic 35.0%
! CTTTTTATATATAGGACCGG+AGG - chr4_3:6077501-6077520 Msa0626490:intron 35.0%
ATTTGGACAGTGATACTGAT+AGG - chr4_3:6077531-6077550 Msa0626490:intron 35.0%
CAACAACTATACTAGAGTCT+AGG + chr4_3:6077565-6077584 None:intergenic 35.0%
!!! AATCTATTTTTATCGGGGAG+GGG + chr4_3:6077807-6077826 None:intergenic 35.0%
!!! CAATCTATTTTTATCGGGGA+GGG + chr4_3:6077808-6077827 None:intergenic 35.0%
!!! ACAATCTATTTTTATCGGGG+AGG + chr4_3:6077809-6077828 None:intergenic 35.0%
! AAACGGTGTTTTTCGTTCAA+AGG + chr4_3:6077841-6077860 None:intergenic 35.0%
!!! ACACCGTTTTAATTGAACCA+TGG - chr4_3:6077852-6077871 Msa0626490:CDS 35.0%
GCTCCATGGTTCAATTAAAA+CGG + chr4_3:6077858-6077877 None:intergenic 35.0%
!! AAAGAATATAGGGCTTTGGA+AGG - chr4_3:6078178-6078197 Msa0626490:CDS 35.0%
!! AAGAATATAGGGCTTTGGAA+GGG - chr4_3:6078179-6078198 Msa0626490:CDS 35.0%
! TGGACCATTGGTTAATGAAA+AGG + chr4_3:6078390-6078409 None:intergenic 35.0%
TTGAATGGTTTACCTGAGAT+AGG + chr4_3:6078421-6078440 None:intergenic 35.0%
AGTCAATCACAACGATTGAA+TGG + chr4_3:6078436-6078455 None:intergenic 35.0%
GAGAAGAAGGAAATCATCTA+AGG + chr4_3:6078535-6078554 None:intergenic 35.0%
TTCTTCTCCACCAAAAGAAA+CGG - chr4_3:6078547-6078566 Msa0626490:intron 35.0%
!! TACAATACTGCATTGGCTTA+AGG + chr4_3:6078929-6078948 None:intergenic 35.0%
AACAGGGAAATGGAAAATGA+AGG + chr4_3:6078991-6079010 None:intergenic 35.0%
TATCTGGACATGAAGCATAT+TGG + chr4_3:6079026-6079045 None:intergenic 35.0%
GTAATTGTGGCTAGATATCT+CGG - chr4_3:6079055-6079074 Msa0626490:intron 35.0%
TTGCTTATATTTCGTTCTGG+GGG - chr4_3:6079200-6079219 Msa0626490:CDS 35.0%
ATAGATCAAAGGGAAACGTA+AGG - chr4_3:6079434-6079453 Msa0626490:CDS 35.0%
ATGAGAAAGTCAGGGAAAAA+AGG - chr4_3:6079484-6079503 Msa0626490:intron 35.0%
ATACATTGCTAAGCATGCAA+TGG + chr4_3:6079521-6079540 None:intergenic 35.0%
ATTGCATGCTTAGCAATGTA+TGG - chr4_3:6079520-6079539 Msa0626490:intron 35.0%
CTTAGCAATGTATGGAAGTT+TGG - chr4_3:6079528-6079547 Msa0626490:intron 35.0%
TCGACAAGATCATGTATTTC+CGG + chr4_3:6079562-6079581 None:intergenic 35.0%
ACTTTAAGCCGAAAATCAGA+CGG - chr4_3:6079604-6079623 Msa0626490:intron 35.0%
GTTGAGATGTTGAACAAGAA+AGG - chr4_3:6079652-6079671 Msa0626490:intron 35.0%
AATCTCTTGTGCATTGAAAC+AGG + chr4_3:6079713-6079732 None:intergenic 35.0%
!! GCAGTGTTTTTGAGAAAGAT+TGG - chr4_3:6079733-6079752 Msa0626490:intron 35.0%
! TGATAGCCTTGATTCTCTTA+AGG - chr4_3:6079801-6079820 Msa0626490:intron 35.0%
!!! TCGTGTAAGTTTTAGGAAAC+AGG + chr4_3:6079828-6079847 None:intergenic 35.0%
GTTTCCTAAAACTTACACGA+AGG - chr4_3:6079828-6079847 Msa0626490:intron 35.0%
!! GATTTGCTAACTGTGTGAAT+GGG + chr4_3:6079947-6079966 None:intergenic 35.0%
AGACTATTCAAATGTGTGTG+CGG + chr4_3:6080109-6080128 None:intergenic 35.0%
!! ACTCCTGCAACATTTTTAAG+AGG + chr4_3:6080171-6080190 None:intergenic 35.0%
TGGTACAAAAACATCACTCT+CGG + chr4_3:6080278-6080297 None:intergenic 35.0%
! GTTTTTGTACCAGCAATTTC+GGG - chr4_3:6080286-6080305 Msa0626490:intron 35.0%
AGCCGTAATTTCAGATTCAT+CGG - chr4_3:6080372-6080391 Msa0626490:intron 35.0%
! AGCCGATGAATCTGAAATTA+CGG + chr4_3:6080377-6080396 None:intergenic 35.0%
!!! TACAGTTTTTTTAGGGCCTA+AGG - chr4_3:6080505-6080524 Msa0626490:intron 35.0%
ATCTGCAAACAAAAGACCTT+AGG + chr4_3:6080524-6080543 None:intergenic 35.0%
CACAAGGCTATTCACATATT+TGG - chr4_3:6080620-6080639 Msa0626490:exon 35.0%
!! GATACTGCATTCATTGACTT+TGG - chr4_3:6080696-6080715 Msa0626490:five_prime_UTR 35.0%
GATAAACATTCATCCCAATG+GGG - chr4_3:6080741-6080760 Msa0626490:five_prime_UTR 35.0%
GAAAGTCCAGGTAGGATATT+AGG - chr4_3:6076792-6076811 Msa0626490:three_prime_UTR 40.0%
GTTCTTCCTAATATCCTACC+TGG + chr4_3:6076801-6076820 None:intergenic 40.0%
! GATTTGAGACAAGTAGTTGC+TGG - chr4_3:6076961-6076980 Msa0626490:three_prime_UTR 40.0%
TGTCCAAATTATACTCCCTC+CGG + chr4_3:6077520-6077539 None:intergenic 40.0%
!! GGGGAAATTTGTTAGTAGCA+GGG + chr4_3:6077788-6077807 None:intergenic 40.0%
!! AGGGGAAATTTGTTAGTAGC+AGG + chr4_3:6077789-6077808 None:intergenic 40.0%
TAATATATTCGGCAGCTCCA+TGG + chr4_3:6077872-6077891 None:intergenic 40.0%
! ATGCAAGTGCTTTTCTGATC+CGG - chr4_3:6077997-6078016 Msa0626490:CDS 40.0%
TGACGAGTTAAAACCGTGTT+GGG - chr4_3:6078208-6078227 Msa0626490:CDS 40.0%
AATGGTTTACCTGAGATAGG+TGG + chr4_3:6078418-6078437 None:intergenic 40.0%
! GTTTCTTTTGGTGGAGAAGA+AGG + chr4_3:6078548-6078567 None:intergenic 40.0%
! AATGACACCGTTTCTTTTGG+TGG + chr4_3:6078557-6078576 None:intergenic 40.0%
ACGAAAGAAGAACAGGGAAA+TGG + chr4_3:6079001-6079020 None:intergenic 40.0%
!! TTGGTGACGAAAGAAGAACA+GGG + chr4_3:6079007-6079026 None:intergenic 40.0%
!! ATTGGTGACGAAAGAAGAAC+AGG + chr4_3:6079008-6079027 None:intergenic 40.0%
CAATTACTGCATCTGCTATC+TGG + chr4_3:6079042-6079061 None:intergenic 40.0%
GATAGCAGATGCAGTAATTG+TGG - chr4_3:6079042-6079061 Msa0626490:intron 40.0%
! TGCTTATATTTCGTTCTGGG+GGG - chr4_3:6079201-6079220 Msa0626490:CDS 40.0%
TTCATGTCTCAGGAACTTTG+AGG - chr4_3:6079255-6079274 Msa0626490:intron 40.0%
TGACGTGTTCATGAAAAGCA+TGG - chr4_3:6079291-6079310 Msa0626490:intron 40.0%
! GTGTTCATGAAAAGCATGGA+AGG - chr4_3:6079295-6079314 Msa0626490:intron 40.0%
CTATGTAATCTTCGGTAACC+CGG + chr4_3:6079393-6079412 None:intergenic 40.0%
GTGTCGAGCTATGTAATCTT+CGG + chr4_3:6079401-6079420 None:intergenic 40.0%
!! ACATGATCTTGTCGACTCAA+TGG - chr4_3:6079567-6079586 Msa0626490:intron 40.0%
!! TTGTCGACTCAATGGTTGAA+AGG - chr4_3:6079575-6079594 Msa0626490:intron 40.0%
AGACGGTCAATTTATTGCTG+TGG - chr4_3:6079621-6079640 Msa0626490:intron 40.0%
TTGAACAAGAAAGGTTGCCA+AGG - chr4_3:6079661-6079680 Msa0626490:intron 40.0%
ACAGGTCCTTAAGAGAATCA+AGG + chr4_3:6079810-6079829 None:intergenic 40.0%
! CTCACCTTCGTGTAAGTTTT+AGG + chr4_3:6079835-6079854 None:intergenic 40.0%
!! CGATTTGCTAACTGTGTGAA+TGG + chr4_3:6079948-6079967 None:intergenic 40.0%
TCACACAGTTAGCAAATCGA+TGG - chr4_3:6079949-6079968 Msa0626490:intron 40.0%
GTCGTAGGATTGAGATAAGA+CGG - chr4_3:6079971-6079990 Msa0626490:intron 40.0%
GACTATTCAAATGTGTGTGC+GGG + chr4_3:6080108-6080127 None:intergenic 40.0%
AACTTTGTCTTCTTATCCGC+CGG + chr4_3:6080202-6080221 None:intergenic 40.0%
TACAATAGACCCGAAATTGC+TGG + chr4_3:6080298-6080317 None:intergenic 40.0%
AACGTAGCTGGTAAAAGGAT+CGG - chr4_3:6080322-6080341 Msa0626490:intron 40.0%
! GATGAATCTGAAATTACGGC+TGG + chr4_3:6080373-6080392 None:intergenic 40.0%
TACACTAAGTCAACCCCATT+GGG + chr4_3:6080757-6080776 None:intergenic 40.0%
ATACACTAAGTCAACCCCAT+TGG + chr4_3:6080758-6080777 None:intergenic 40.0%
ATACCACTGAGCTACACCTT+CGG + chr4_3:6077732-6077751 None:intergenic 45.0%
GTAGCTCAGTGGTATCAGTT+TGG - chr4_3:6077737-6077756 Msa0626490:intron 45.0%
GTTGCATCATCTGTTGATCC+TGG + chr4_3:6078122-6078141 None:intergenic 45.0%
CTGACGAGTTAAAACCGTGT+TGG - chr4_3:6078207-6078226 Msa0626490:CDS 45.0%
CTTGTGATCCCTGACATTAG+AGG - chr4_3:6079085-6079104 Msa0626490:intron 45.0%
! GTTGGCTTCCTCTAATGTCA+GGG + chr4_3:6079096-6079115 None:intergenic 45.0%
AGAACTAACCTCTTGTCACC+AGG + chr4_3:6079118-6079137 None:intergenic 45.0%
!! GCTTATATTTCGTTCTGGGG+GGG - chr4_3:6079202-6079221 Msa0626490:CDS 45.0%
CTGGGGGGGAATATAATTCA+TGG - chr4_3:6079216-6079235 Msa0626490:intron 45.0%
! CATGAAAAGCATGGAAGGAG+TGG - chr4_3:6079300-6079319 Msa0626490:intron 45.0%
AATCTTCGGTAACCCGGTTA+GGG + chr4_3:6079387-6079406 None:intergenic 45.0%
TAATCTTCGGTAACCCGGTT+AGG + chr4_3:6079388-6079407 None:intergenic 45.0%
ATGAGCACACACACACACAT+GGG - chr4_3:6079894-6079913 Msa0626490:intron 45.0%
TGCTAACTGTGTGAATGGGT+GGG + chr4_3:6079943-6079962 None:intergenic 45.0%
TTGCTAACTGTGTGAATGGG+TGG + chr4_3:6079944-6079963 None:intergenic 45.0%
GTTAGCAAATCGATGGTCGT+AGG - chr4_3:6079956-6079975 Msa0626490:intron 45.0%
GATCGTTGGATGAGATCAGA+CGG + chr4_3:6080036-6080055 None:intergenic 45.0%
GTCAGCAGATTAGTGATCGT+TGG + chr4_3:6080050-6080069 None:intergenic 45.0%
! GATCACTAATCTGCTGACTG+TGG - chr4_3:6080052-6080071 Msa0626490:intron 45.0%
TGGTGTGAGTTTGTGATTGC+AGG - chr4_3:6080072-6080091 Msa0626490:intron 45.0%
CTATTGTATGCGAACGTAGC+TGG - chr4_3:6080310-6080329 Msa0626490:intron 45.0%
ATGCGAACGTAGCTGGTAAA+AGG - chr4_3:6080317-6080336 Msa0626490:intron 45.0%
! GGACCGGAGGGAGTATAATT+TGG - chr4_3:6077514-6077533 Msa0626490:intron 50.0%
TACCACTGAGCTACACCTTC+GGG + chr4_3:6077731-6077750 None:intergenic 50.0%
! TTTGGACACCGATTGAGTCC+AGG - chr4_3:6077755-6077774 Msa0626490:CDS 50.0%
! TTGGACACCGATTGAGTCCA+GGG - chr4_3:6077756-6077775 Msa0626490:CDS 50.0%
GATCGAACCCTGGACTCAAT+CGG + chr4_3:6077766-6077785 None:intergenic 50.0%
TCGAGGAAGCCATATGCGTT+TGG - chr4_3:6078276-6078295 Msa0626490:CDS 50.0%
TAGGTGGTACTCTGGACCAT+TGG + chr4_3:6078402-6078421 None:intergenic 50.0%
! TCCAGAGTACCACCTATCTC+AGG - chr4_3:6078406-6078425 Msa0626490:intron 50.0%
ACCTGAGATAGGTGGTACTC+TGG + chr4_3:6078410-6078429 None:intergenic 50.0%
!! GGTTGGCTTCCTCTAATGTC+AGG + chr4_3:6079097-6079116 None:intergenic 50.0%
GACATTAGAGGAAGCCAACC+TGG - chr4_3:6079097-6079116 Msa0626490:intron 50.0%
CTAACCTCTTGTCACCAGGT+TGG + chr4_3:6079114-6079133 None:intergenic 50.0%
CATGGAAGGAGTGGTCAAAG+TGG - chr4_3:6079309-6079328 Msa0626490:intron 50.0%
! TGGAAGTTTGGAGTTGCAGC+CGG - chr4_3:6079540-6079559 Msa0626490:intron 50.0%
CATGAGCACACACACACACA+TGG - chr4_3:6079893-6079912 Msa0626490:intron 50.0%
CACACACACACACATGGGTT+TGG - chr4_3:6079899-6079918 Msa0626490:intron 50.0%
ATGGGTGGGATTGTAACTGC+AGG + chr4_3:6079929-6079948 None:intergenic 50.0%
GTTGCAGGAGTCAATCATGC+CGG - chr4_3:6080180-6080199 Msa0626490:intron 50.0%
! GCTGGTAAAAGGATCGGTTC+TGG - chr4_3:6080328-6080347 Msa0626490:intron 50.0%
GTTTGTCCTTGTGTCCCCGA+AGG - chr4_3:6077713-6077732 Msa0626490:intron 55.0%
ACCACTGAGCTACACCTTCG+GGG + chr4_3:6077730-6077749 None:intergenic 55.0%
TAGTAGCAGGGATCGAACCC+TGG + chr4_3:6077776-6077795 None:intergenic 55.0%
CCAGACGGCTTAACCCAACA+CGG + chr4_3:6078224-6078243 None:intergenic 55.0%
TGTTGGGTTAAGCCGTCTGG+AGG - chr4_3:6078224-6078243 Msa0626490:CDS 55.0%
TCGATGGTTGGCAGACGAAG+TGG - chr4_3:6078343-6078362 Msa0626490:intron 55.0%
GACGAAGTGGAGCAGACAGA+CGG - chr4_3:6078356-6078375 Msa0626490:intron 55.0%
ACGAAGTGGAGCAGACAGAC+GGG - chr4_3:6078357-6078376 Msa0626490:intron 55.0%
GAAGCCAACCTGGTGACAAG+AGG - chr4_3:6079107-6079126 Msa0626490:intron 55.0%
CTGCTGTGAAGGTCCCTAAC+CGG - chr4_3:6079371-6079390 Msa0626490:CDS 55.0%
TGCTGTGAAGGTCCCTAACC+GGG - chr4_3:6079372-6079391 Msa0626490:CDS 55.0%
GCTACACCTTCGGGGACACA+AGG + chr4_3:6077722-6077741 None:intergenic 60.0%
! TCCCCGAAGGTGTAGCTCAG+TGG - chr4_3:6077726-6077745 Msa0626490:intron 60.0%
CCGTGTTGGGTTAAGCCGTC+TGG - chr4_3:6078221-6078240 Msa0626490:CDS 60.0%
GCAGGAGTCAATCATGCCGG+CGG - chr4_3:6080183-6080202 Msa0626490:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 6076785 6080802 6076785 ID=Msa0626490;Name=Msa0626490
chr4_3 mRNA 6076785 6080802 6076785 ID=Msa0626490-mRNA-1;Parent=Msa0626490;Name=Msa0626490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=167|1|1|1|1|1|6|337|419
chr4_3 exon 6076785 6077400 6076785 ID=Msa0626490-mRNA-1:exon:1776;Parent=Msa0626490-mRNA-1
chr4_3 exon 6077738 6078320 6077738 ID=Msa0626490-mRNA-1:exon:1775;Parent=Msa0626490-mRNA-1
chr4_3 exon 6078459 6078544 6078459 ID=Msa0626490-mRNA-1:exon:1774;Parent=Msa0626490-mRNA-1
chr4_3 exon 6079160 6079230 6079160 ID=Msa0626490-mRNA-1:exon:1773;Parent=Msa0626490-mRNA-1
chr4_3 exon 6079342 6079480 6079342 ID=Msa0626490-mRNA-1:exon:1772;Parent=Msa0626490-mRNA-1
chr4_3 exon 6080534 6080802 6080534 ID=Msa0626490-mRNA-1:exon:1771;Parent=Msa0626490-mRNA-1
chr4_3 five_prime_UTR 6080636 6080802 6080636 ID=Msa0626490-mRNA-1:five_prime_utr;Parent=Msa0626490-mRNA-1
chr4_3 CDS 6080534 6080635 6080534 ID=Msa0626490-mRNA-1:cds;Parent=Msa0626490-mRNA-1
chr4_3 CDS 6079342 6079480 6079342 ID=Msa0626490-mRNA-1:cds;Parent=Msa0626490-mRNA-1
chr4_3 CDS 6079160 6079230 6079160 ID=Msa0626490-mRNA-1:cds;Parent=Msa0626490-mRNA-1
chr4_3 CDS 6078459 6078544 6078459 ID=Msa0626490-mRNA-1:cds;Parent=Msa0626490-mRNA-1
chr4_3 CDS 6077738 6078320 6077738 ID=Msa0626490-mRNA-1:cds;Parent=Msa0626490-mRNA-1
chr4_3 CDS 6077122 6077400 6077122 ID=Msa0626490-mRNA-1:cds;Parent=Msa0626490-mRNA-1
chr4_3 three_prime_UTR 6076785 6077121 6076785 ID=Msa0626490-mRNA-1:three_prime_utr;Parent=Msa0626490-mRNA-1
Gene Sequence

>Msa0626490

ATGGGTTTTGATTTGAGACAAGTAGTTGCTGGTATCCTCACTCTCACTATGTTTGTTATGCTTATCCATATGATTAAAAGAGACCATTTTGATTCTGTTCAAGATAATAAATTTCCAGGATCAACAGATGATGCAACCTATGAAAATGTAAAGATGGATACTACACATGTAAGAAAGAATATAGGGCTTTGGAAGGGAGATACTGACGAGTTAAAACCGTGTTGGGTTAAGCCGTCTGGAGACGAAGTGGAGCAGACAGACGGGTTTGTTACCTTTTCATTAACCAATGGTCCAGAGTACCACCTATCTCAGATAGCAGATGCAGTAATTGTGGCTAGATATCTCGGAGCATCACTTGTGATCCCTGACATTAGAGGAAGCCAACCTGGTGACAAGAGGAACTTTGAGGATATTTATGATGTTGACGTGTTCATGAAAAGCATGGAAGGAGTGGTCAAAGTGGTAAAAGATCTTCCTTCTCATGTAACAACTAAAAAAATTGCTGCTGTGAAGGTCCCTAACCGGGTTACCGAAGATTACATAGCTCGACACGTCGAACCAATTTATAGATCAAAGGGAAACGTAAGGCTAGCGACTTACTTTCCTTCAATAAACATGAGAAAGTCAGGGAAAAAAGGTGACACTGATTCCATTGCATGCTTAGCAATGTATGGAAGTTTGGAGTTGCAGCCGGAAATACATGATCTTGTCGACTCAATGGTTGAAAGGCTTAGAACTTTAAGCCGAAAATCAGACGGTCAATTTATTGCTGTGGATTTGAGAGTTGAGATGTTGAACAAGAAAGGTTGCCAAGGAAATGATGATAATGATGGAGAGAAGACCTGTTTCAATGCACAAGAGATTGCAGTGTTTTTGAGAAAGATTGGTATTGATAAGGATACCACAATTTATTTGACACAATCAAGGTGGGATGATAGCCTTGATTCTCTTAAGGACCTGTTTCCTAAAACTTACACGAAGGAGTCAATCATGCCGGCGGATAAGAAGACAAAGTTCCTAGATTCTAAAGATTCTGAATTGGAGAATGTGATTGACTTTTACATTAGTACCGAGAGTGATGTTTTTGTACCAGCAATTTCGGGTCTATTGTATGCGAACGTAGCTGGTAAAAGGATCGGTTCTGGTAAAACACAAATATTGGTTCCAGCCGTAATTTCAGATTCATCGGCTTCAGCAACAAGTTTCTTGTCCCCTTATATCTCCAAGAAAAACCACTTTGCATATTCTTGTTATTGTTAG

Protein sequence

>Msa0626490

MGFDLRQVVAGILTLTMFVMLIHMIKRDHFDSVQDNKFPGSTDDATYENVKMDTTHVRKNIGLWKGDTDELKPCWVKPSGDEVEQTDGFVTFSLTNGPEYHLSQIADAVIVARYLGASLVIPDIRGSQPGDKRNFEDIYDVDVFMKSMEGVVKVVKDLPSHVTTKKIAAVKVPNRVTEDYIARHVEPIYRSKGNVRLATYFPSINMRKSGKKGDTDSIACLAMYGSLELQPEIHDLVDSMVERLRTLSRKSDGQFIAVDLRVEMLNKKGCQGNDDNDGEKTCFNAQEIAVFLRKIGIDKDTTIYLTQSRWDDSLDSLKDLFPKTYTKESIMPADKKTKFLDSKDSELENVIDFYISTESDVFVPAISGLLYANVAGKRIGSGKTQILVPAVISDSSASATSFLSPYISKKNHFAYSCYC*