AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0664600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0664600 MtrunA17_Chr4g0002361 99.045 419 4 0 1 419 1 419 0.0 857
Msa0664600 MtrunA17_Chr2g0298881 52.247 356 167 3 65 419 13 366 1.12e-137 398
Msa0664600 MtrunA17_Chr5g0399311 28.739 341 197 12 84 389 122 451 3.95e-27 113
Msa0664600 MtrunA17_Chr3g0143821 27.714 350 201 11 78 389 103 438 8.58e-27 112
Msa0664600 MtrunA17_Chr5g0424241 27.011 348 204 9 87 389 158 500 3.53e-26 110
Msa0664600 MtrunA17_Chr4g0042711 26.023 342 203 12 86 388 97 427 1.66e-24 105
Msa0664600 MtrunA17_Chr5g0417871 27.190 331 192 14 86 378 85 404 1.67e-24 105
Msa0664600 MtrunA17_Chr4g0056061 27.729 339 199 12 86 389 108 435 1.68e-24 105
Msa0664600 MtrunA17_Chr3g0129981 27.548 363 195 15 63 378 89 430 2.71e-24 105
Msa0664600 MtrunA17_Chr3g0132951 25.469 373 207 13 72 378 85 452 5.28e-24 103
Msa0664600 MtrunA17_Chr4g0061781 26.050 357 212 15 71 387 103 447 9.04e-24 103
Msa0664600 MtrunA17_Chr5g0426591 25.442 452 248 19 5 389 12 441 1.04e-23 103
Msa0664600 MtrunA17_Chr1g0160781 23.575 386 237 11 63 396 125 504 1.55e-23 102
Msa0664600 MtrunA17_Chr2g0307971 25.356 351 200 14 83 387 112 446 7.24e-22 97.8
Msa0664600 MtrunA17_Chr3g0123521 23.002 413 257 13 48 407 104 508 1.21e-21 97.1
Msa0664600 MtrunA17_Chr3g0087291 25.272 368 206 15 72 389 153 501 4.25e-21 95.5
Msa0664600 MtrunA17_Chr5g0412251 24.444 360 202 12 84 378 84 438 4.46e-21 95.1
Msa0664600 MtrunA17_Chr4g0003561 25.434 346 222 9 70 387 56 393 3.75e-20 92.0
Msa0664600 MtrunA17_Chr4g0043911 23.580 352 220 8 70 378 135 480 6.32e-20 92.0
Msa0664600 MtrunA17_Chr3g0077321 24.576 354 216 10 70 378 130 477 6.33e-20 92.0
Msa0664600 MtrunA17_Chr4g0010511 24.259 371 225 12 63 389 203 561 2.32e-19 90.5
Msa0664600 MtrunA17_Chr3g0132371 24.185 368 215 14 63 384 116 465 3.23e-19 89.7
Msa0664600 MtrunA17_Chr1g0204121 22.449 392 238 16 63 402 62 439 1.69e-17 84.3
Msa0664600 MtrunA17_Chr7g0220381 25.271 277 144 8 81 306 93 357 6.50e-16 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0664600 AT3G21190.1 63.208 424 149 3 1 419 1 422 0.0 561
Msa0664600 AT1G51630.1 61.882 425 154 4 1 419 1 423 0.0 553
Msa0664600 AT1G38065.2 26.648 349 206 9 86 389 26 369 1.63e-27 114
Msa0664600 AT1G38065.1 26.648 349 206 9 86 389 36 379 1.88e-27 114
Msa0664600 AT1G38131.1 26.648 349 206 9 86 389 155 498 3.47e-27 114
Msa0664600 AT5G64600.1 27.586 406 231 14 26 389 60 444 7.49e-27 112
Msa0664600 AT1G20550.1 27.520 367 215 13 78 411 101 449 2.55e-25 108
Msa0664600 AT1G76270.1 28.529 340 200 12 83 389 103 432 7.38e-25 107
Msa0664600 AT4G38390.1 26.239 343 210 10 81 389 118 451 3.65e-23 102
Msa0664600 AT4G16650.2 28.446 341 198 11 84 389 120 449 5.33e-22 98.6
Msa0664600 AT4G16650.1 28.446 341 198 11 84 389 120 449 5.33e-22 98.6
Msa0664600 AT3G26370.1 23.430 414 256 12 48 408 112 517 8.42e-22 98.2
Msa0664600 AT3G02250.1 25.287 348 198 14 83 384 103 434 1.72e-20 94.0
Msa0664600 AT5G65470.1 23.177 384 223 13 63 378 60 439 3.04e-20 93.2
Msa0664600 AT1G35510.1 24.791 359 221 9 64 378 136 489 6.93e-20 92.4
Msa0664600 AT5G15740.1 24.629 337 206 13 87 384 107 434 8.31e-20 92.0
Msa0664600 AT2G03280.1 25.000 340 208 12 86 387 88 418 1.02e-19 91.7
Msa0664600 AT1G04910.1 24.074 378 229 14 75 413 81 439 1.53e-19 91.3
Msa0664600 AT5G63390.1 23.775 408 236 16 63 412 134 524 4.31e-19 90.1
Msa0664600 AT2G01480.2 21.564 422 274 10 8 378 69 484 5.62e-17 83.2
Msa0664600 AT2G01480.1 21.564 422 274 10 8 378 69 484 1.10e-16 82.4
Msa0664600 AT1G14970.1 22.198 464 296 14 8 412 70 527 3.41e-16 80.9
Msa0664600 AT1G14970.2 23.077 403 251 12 63 412 11 407 4.14e-16 80.5
Msa0664600 AT2G03280.2 23.433 367 207 13 86 387 88 445 7.25e-16 79.7
Msa0664600 AT2G37980.1 23.097 381 245 15 45 389 185 553 2.76e-14 75.1
Msa0664600 AT3G26370.2 24.138 232 157 6 48 263 112 340 5.75e-14 73.6
Msa0664600 AT5G01100.1 21.467 368 233 12 63 389 191 543 1.60e-13 72.8

Find 109 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAGGCTATTCACATATT+TGG 0.137783 4_4:-3608588 Msa0664600:three_prime_UTR
GTTCCTCTAAAACAAGAAAA+TGG 0.179635 4_4:-3612261 Msa0664600:exon
ATATTTGGCTTGTAAAATTA+TGG 0.193967 4_4:-3608573 Msa0664600:three_prime_UTR
TTTCCCTTTGATCTATAAAT+TGG 0.210218 4_4:+3609781 None:intergenic
CTCATTAAGAACAAGAATTA+TGG 0.238157 4_4:+3608545 None:intergenic
GAAAGTCCAGGTAGGATATT+AGG 0.256378 4_4:-3612402 Msa0664600:five_prime_UTR
TTCTGGTAAAACACAAATAT+TGG 0.269941 4_4:-3608863 Msa0664600:CDS
CTTAGCAATGTATGGAAGTT+TGG 0.306231 4_4:-3609680 Msa0664600:CDS
ATTCAGAATCTTTAGAATCT+AGG 0.306927 4_4:+3608986 None:intergenic
TACAAGGATAATAAATTTCC+AGG 0.315137 4_4:-3611099 Msa0664600:intron
TAATCTTCGGTAACCCGGTT+AGG 0.354107 4_4:+3609823 None:intergenic
GACTTTCTCATGTTTATTGA+AGG 0.356575 4_4:+3609736 None:intergenic
TCGACAAGATCATGTATTTC+CGG 0.357773 4_4:+3609649 None:intergenic
ACACATGTAAGAAAGAATAT+AGG 0.360475 4_4:-3611033 Msa0664600:CDS
TTACTTGAACAGAATCAAAA+TGG 0.369726 4_4:+3612159 None:intergenic
CTGCTGTGAAGGTCCCTAAC+CGG 0.377281 4_4:-3609837 Msa0664600:CDS
ATGCGAACGTAGCTGGTAAA+AGG 0.377684 4_4:-3608891 Msa0664600:CDS
TCAATAAACATGAGAAAGTC+AGG 0.380362 4_4:-3609733 Msa0664600:CDS
CACATGTAAGAAAGAATATA+GGG 0.382191 4_4:-3611032 Msa0664600:CDS
TGATAGCCTTGATTCTCTTA+AGG 0.386325 4_4:-3609407 Msa0664600:CDS
CATCATTATCATCATTTCCT+TGG 0.387233 4_4:+3609530 None:intergenic
GTTGAGATGTTGAACAAGAA+AGG 0.397949 4_4:-3609556 Msa0664600:CDS
GAGAAAGATTGGTATTGATA+AGG 0.398684 4_4:-3609464 Msa0664600:CDS
AGATTCTAAAGATTCTGAAT+TGG 0.399183 4_4:-3608983 Msa0664600:CDS
TAAGAAAGAATATAGGGCTT+TGG 0.414895 4_4:-3611026 Msa0664600:CDS
ATTGCATGCTTAGCAATGTA+TGG 0.415033 4_4:-3609688 Msa0664600:CDS
GATCCTGCATTCATTGACTT+TGG 0.417247 4_4:-3608512 Msa0664600:three_prime_UTR
AGATAAACATTCATCCCAAT+GGG 0.424741 4_4:-3608468 Msa0664600:three_prime_UTR
TTCCTCTAAAACAAGAAAAT+GGG 0.425792 4_4:-3612260 Msa0664600:exon
AATCTCTTGTGCATTGAAAC+AGG 0.427632 4_4:+3609498 None:intergenic
GATTTGAGACAAGTAGTTGC+TGG 0.437086 4_4:-3612233 Msa0664600:CDS
GGTTGGCTTCCTCTAATGTC+AGG 0.452126 4_4:+3610114 None:intergenic
TTGAATGGTTTACCTGAGAT+AGG 0.452979 4_4:+3610782 None:intergenic
CTATTGTATGCGAACGTAGC+TGG 0.454060 4_4:-3608898 Msa0664600:CDS
CCGTGTTGGGTTAAGCCGTC+TGG 0.456324 4_4:-3610979 Msa0664600:CDS
GCTGGTAAAAGGATCGGTTC+TGG 0.458320 4_4:-3608880 Msa0664600:CDS
TACACTAAGTCAACCCCATT+GGG 0.462494 4_4:+3608454 None:intergenic
CTTGTGATCCCTGACATTAG+AGG 0.462574 4_4:-3610123 Msa0664600:CDS
AGCCGATGAATCTGAAATTA+CGG 0.462609 4_4:+3608834 None:intergenic
TGGACCATTGGTTAATGAAA+AGG 0.468674 4_4:+3610813 None:intergenic
TACAATAGACCCGAAATTGC+TGG 0.469638 4_4:+3608913 None:intergenic
CAATTTATTTGACACAATCA+AGG 0.470225 4_4:-3609435 Msa0664600:CDS
AACTTTGTCTTCTTATCCGC+CGG 0.478466 4_4:+3609009 None:intergenic
TGACGAGTTAAAACCGTGTT+GGG 0.478923 4_4:-3610992 Msa0664600:CDS
CGAACCAATTTATAGATCAA+AGG 0.484845 4_4:-3609785 Msa0664600:CDS
GAACCAATTTATAGATCAAA+GGG 0.484926 4_4:-3609784 Msa0664600:CDS
GTTGCATCATCTGTTGATCC+TGG 0.495630 4_4:+3611081 None:intergenic
CTATGTAATCTTCGGTAACC+CGG 0.496129 4_4:+3609818 None:intergenic
ACATGATCTTGTCGACTCAA+TGG 0.503901 4_4:-3609641 Msa0664600:CDS
AGCCGTAATTTCAGATTCAT+CGG 0.504226 4_4:-3608836 Msa0664600:CDS
TAGATAAACATTCATCCCAA+TGG 0.504319 4_4:-3608469 Msa0664600:three_prime_UTR
GACATTAGAGGAAGCCAACC+TGG 0.505026 4_4:-3610111 Msa0664600:CDS
AATCTTCGGTAACCCGGTTA+GGG 0.507255 4_4:+3609824 None:intergenic
AGACGGTCAATTTATTGCTG+TGG 0.514073 4_4:-3609587 Msa0664600:CDS
TGGAAGTTTGGAGTTGCAGC+CGG 0.514488 4_4:-3609668 Msa0664600:CDS
TTGTCGACTCAATGGTTGAA+AGG 0.530466 4_4:-3609633 Msa0664600:CDS
AACCTATGAAAATGTAAAGA+TGG 0.530585 4_4:-3611061 Msa0664600:CDS
GTAATTGTGGCTAGATATCT+CGG 0.530926 4_4:-3610153 Msa0664600:CDS
TTCATGTCTCAGGAACTTTG+AGG 0.534152 4_4:-3609953 Msa0664600:intron
AAAGAATATAGGGCTTTGGA+AGG 0.536631 4_4:-3611022 Msa0664600:CDS
TGCTGTGAAGGTCCCTAACC+GGG 0.540265 4_4:-3609836 Msa0664600:CDS
GTGTCGAGCTATGTAATCTT+CGG 0.540315 4_4:+3609810 None:intergenic
ATCTGCAAACAAAAGACCTT+AGG 0.545962 4_4:+3608687 None:intergenic
GATGAATCTGAAATTACGGC+TGG 0.551992 4_4:+3608838 None:intergenic
AAAGAAAAGAAAGAAAGTCC+AGG 0.557845 4_4:-3612414 None:intergenic
TCCAGAGTACCACCTATCTC+AGG 0.558813 4_4:-3610794 Msa0664600:intron
ATACACTAAGTCAACCCCAT+TGG 0.560052 4_4:+3608453 None:intergenic
TAGCCAAAGTCAATGAATGC+AGG 0.561607 4_4:+3608509 None:intergenic
ACCTGAGATAGGTGGTACTC+TGG 0.562659 4_4:+3610793 None:intergenic
CAAGGAAATGATGATAATGA+TGG 0.567082 4_4:-3609529 Msa0664600:CDS
TAGGTGGTACTCTGGACCAT+TGG 0.568629 4_4:+3610801 None:intergenic
ACAGGTCCTTAAGAGAATCA+AGG 0.568795 4_4:+3609401 None:intergenic
GATAGCAGATGCAGTAATTG+TGG 0.569998 4_4:-3610166 Msa0664600:CDS
CTGACGAGTTAAAACCGTGT+TGG 0.574512 4_4:-3610993 Msa0664600:CDS
TTATTTGACACAATCAAGGT+GGG 0.575583 4_4:-3609431 Msa0664600:CDS
GACGAAGTGGAGCAGACAGA+CGG 0.578720 4_4:-3610844 Msa0664600:CDS
GTTGGCTTCCTCTAATGTCA+GGG 0.580467 4_4:+3610115 None:intergenic
ACGAAGTGGAGCAGACAGAC+GGG 0.590735 4_4:-3610843 Msa0664600:CDS
AACGTAGCTGGTAAAAGGAT+CGG 0.594479 4_4:-3608886 Msa0664600:CDS
CATGAAAAGCATGGAAGGAG+TGG 0.595034 4_4:-3609908 Msa0664600:CDS
TCGATGGTTGGCAGACGAAG+TGG 0.598053 4_4:-3610857 Msa0664600:intron
GTGTTCATGAAAAGCATGGA+AGG 0.599368 4_4:-3609913 Msa0664600:CDS
GTTCTTCCTAATATCCTACC+TGG 0.600567 4_4:+3612396 None:intergenic
ATACATTGCTAAGCATGCAA+TGG 0.603322 4_4:+3609690 None:intergenic
AGAACTAACCTCTTGTCACC+AGG 0.607111 4_4:+3610093 None:intergenic
TTGAACAAGAAAGGTTGCCA+AGG 0.610391 4_4:-3609547 Msa0664600:CDS
CTAACCTCTTGTCACCAGGT+TGG 0.610952 4_4:+3610097 None:intergenic
AATTTAATATTACCTCCAGA+CGG 0.612585 4_4:+3610964 None:intergenic
ATAGATCAAAGGGAAACGTA+AGG 0.616496 4_4:-3609774 Msa0664600:CDS
TTTATTTGACACAATCAAGG+TGG 0.619794 4_4:-3609432 Msa0664600:CDS
ATTTAACATGTATGTACACA+AGG 0.622676 4_4:-3608604 Msa0664600:three_prime_UTR
GTTGCAGGAGTCAATCATGC+CGG 0.628375 4_4:-3609028 Msa0664600:intron
AAGAATATAGGGCTTTGGAA+GGG 0.632512 4_4:-3611021 Msa0664600:CDS
TAACAAACATAGTGAGAGTG+AGG 0.633154 4_4:+3612207 None:intergenic
AAAAGAAAGAAAGTCCAGGT+AGG 0.640973 4_4:-3612410 Msa0664600:five_prime_UTR
AATAACAAGAATATGCAAAG+TGG 0.644534 4_4:+3608770 None:intergenic
ATCATTGTCAGTGAAAGTGT+CGG 0.644659 4_4:-3612373 Msa0664600:five_prime_UTR
GAAGCCAACCTGGTGACAAG+AGG 0.647434 4_4:-3610101 Msa0664600:intron
CAATAAACATGAGAAAGTCA+GGG 0.649727 4_4:-3609732 Msa0664600:CDS
TGTTGGGTTAAGCCGTCTGG+AGG 0.656915 4_4:-3610976 Msa0664600:intron
CATGGAAGGAGTGGTCAAAG+TGG 0.657662 4_4:-3609899 Msa0664600:CDS
GTTTCCTAAAACTTACACGA+AGG 0.660480 4_4:-3609380 Msa0664600:intron
TGACGTGTTCATGAAAAGCA+TGG 0.665989 4_4:-3609917 Msa0664600:CDS
ACTTTAAGCCGAAAATCAGA+CGG 0.668948 4_4:-3609604 Msa0664600:CDS
AATGGTTTACCTGAGATAGG+TGG 0.671281 4_4:+3610785 None:intergenic
GCAGGAGTCAATCATGCCGG+CGG 0.677301 4_4:-3609025 Msa0664600:intron
TGATTGTGTCAAATAAATTG+TGG 0.680581 4_4:+3609438 None:intergenic
CCAGACGGCTTAACCCAACA+CGG 0.681147 4_4:+3610979 None:intergenic
GATAAACATTCATCCCAATG+GGG 0.743943 4_4:-3608467 Msa0664600:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTGACTTTTTATATAT+AGG - chr4_4:3609082-3609101 Msa0664600:intron 10.0%
!! TTTGGATAAAAATGAAAAAT+GGG + chr4_4:3608657-3608676 None:intergenic 15.0%
!! TTTGTTCATAACAAAAAAAA+TGG + chr4_4:3608769-3608788 None:intergenic 15.0%
!!! AACAAAGTTAGTTAATTTTA+GGG - chr4_4:3608783-3608802 Msa0664600:CDS 15.0%
!!! AAATGAATTTTAACTTTCAA+AGG - chr4_4:3608840-3608859 Msa0664600:CDS 15.0%
!!! GTCAATTATTTGTTTTATAT+AGG + chr4_4:3609036-3609055 None:intergenic 15.0%
!! CTTAGATTGATTAATATATT+CGG + chr4_4:3609471-3609490 None:intergenic 15.0%
!! AAGATAGATATTAGATAAAT+AGG - chr4_4:3609488-3609507 Msa0664600:CDS 15.0%
!! CTTTGGATAAAAATGAAAAA+TGG + chr4_4:3608658-3608677 None:intergenic 20.0%
!! AAAGTGAAAAATTGAAACTT+TGG + chr4_4:3608675-3608694 None:intergenic 20.0%
!! TTTCTATATGAATCTCTTAA+AGG - chr4_4:3608705-3608724 Msa0664600:three_prime_UTR 20.0%
!! TTCTATATGAATCTCTTAAA+GGG - chr4_4:3608706-3608725 Msa0664600:three_prime_UTR 20.0%
!!! GAACAAAGTTAGTTAATTTT+AGG - chr4_4:3608782-3608801 Msa0664600:CDS 20.0%
!!! ACAAAGTTAGTTAATTTTAG+GGG - chr4_4:3608784-3608803 Msa0664600:CDS 20.0%
!!! TTATTTGTTTTATATAGGAC+TGG + chr4_4:3609031-3609050 None:intergenic 20.0%
!!! AACAACAATCTATTTTTATC+GGG + chr4_4:3609401-3609420 None:intergenic 20.0%
!!! GAACAACAATCTATTTTTAT+CGG + chr4_4:3609402-3609421 None:intergenic 20.0%
!! AAGACTAATAAAAACAAATC+CGG + chr4_4:3609607-3609626 None:intergenic 20.0%
!!! ATTAATTCATATTTTGTCGA+TGG - chr4_4:3609915-3609934 Msa0664600:CDS 20.0%
!!! CTTCAAGTTTATATCAATTT+TGG + chr4_4:3610213-3610232 None:intergenic 20.0%
!! TAATAGATTCATATTGAAGT+GGG + chr4_4:3610297-3610316 None:intergenic 20.0%
!! TTAATAGATTCATATTGAAG+TGG + chr4_4:3610298-3610317 None:intergenic 20.0%
!! AAATTGTGTTAAATGTAAAG+TGG + chr4_4:3610321-3610340 None:intergenic 20.0%
!! CTTTACATTTAACACAATTT+AGG - chr4_4:3610321-3610340 Msa0664600:intron 20.0%
!! AAAGTAGAGAAAATAAAGAA+TGG + chr4_4:3610548-3610567 None:intergenic 20.0%
!!! ATATTTGGCTTGTAAAATTA+TGG - chr4_4:3612215-3612234 Msa0664600:CDS 20.0%
!!! TTCCTCTAAAACAAGAAAAT+GGG - chr4_4:3608528-3608547 Msa0664600:three_prime_UTR 25.0%
!! AATGGTCTCTTTTAATCATA+TGG + chr4_4:3608614-3608633 None:intergenic 25.0%
! TTACTTGAACAGAATCAAAA+TGG + chr4_4:3608632-3608651 None:intergenic 25.0%
!! GAGATATTAATTGTTTGTTG+TGG - chr4_4:3608938-3608957 Msa0664600:CDS 25.0%
! TCATTGAAATGATGATTTGA+AGG - chr4_4:3608972-3608991 Msa0664600:CDS 25.0%
!! TGACTTTTTATATATAGGAC+CGG - chr4_4:3609087-3609106 Msa0664600:intron 25.0%
!! ACAAGAAAATGTTTCTGATT+TGG - chr4_4:3609240-3609259 Msa0664600:intron 25.0%
!!! ACAACAATCTATTTTTATCG+GGG + chr4_4:3609400-3609419 None:intergenic 25.0%
! TACAAGGATAATAAATTTCC+AGG - chr4_4:3609689-3609708 Msa0664600:CDS 25.0%
! AACCTATGAAAATGTAAAGA+TGG - chr4_4:3609727-3609746 Msa0664600:CDS 25.0%
!! ATCCATCTTTACATTTTCAT+AGG + chr4_4:3609732-3609751 None:intergenic 25.0%
! ACACATGTAAGAAAGAATAT+AGG - chr4_4:3609755-3609774 Msa0664600:CDS 25.0%
! CACATGTAAGAAAGAATATA+GGG - chr4_4:3609756-3609775 Msa0664600:CDS 25.0%
! AATTTAATATTACCTCCAGA+CGG + chr4_4:3609827-3609846 None:intergenic 25.0%
!! ATCAAAATGAGGATTTTTGT+TGG - chr4_4:3610045-3610064 Msa0664600:intron 25.0%
! ATTAGTGATGTAAGATATTG+CGG - chr4_4:3610069-3610088 Msa0664600:intron 25.0%
!! AATAATGACACCATTTCTTT+TGG + chr4_4:3610148-3610167 None:intergenic 25.0%
!!! GGTGTCATTATTGTATATTT+AGG - chr4_4:3610156-3610175 Msa0664600:CDS 25.0%
! GTCATTATTGTATATTTAGG+TGG - chr4_4:3610159-3610178 Msa0664600:CDS 25.0%
!! CAAGTTTATATCAATTTTGG+AGG + chr4_4:3610210-3610229 None:intergenic 25.0%
! GCAAAAAAAGCTTCAAAATA+TGG + chr4_4:3610236-3610255 None:intergenic 25.0%
! TACATTTAACACAATTTAGG+TGG - chr4_4:3610324-3610343 Msa0664600:intron 25.0%
!!! TGAATGAATTGATTTTGTAG+AGG + chr4_4:3610355-3610374 None:intergenic 25.0%
!! AGTCTTTTCATAACTATCAT+TGG + chr4_4:3610440-3610459 None:intergenic 25.0%
!! CAAATTTTACAATACTGCAT+TGG + chr4_4:3610516-3610535 None:intergenic 25.0%
!! TTTATACACCGAATCTTTTA+TGG + chr4_4:3610723-3610742 None:intergenic 25.0%
!! TTTTGCTTATATTTCGTTCT+GGG - chr4_4:3610778-3610797 Msa0664600:intron 25.0%
!!! TTTTTAGTTGTTACATGAGA+AGG + chr4_4:3610926-3610945 None:intergenic 25.0%
! GAACCAATTTATAGATCAAA+GGG - chr4_4:3611004-3611023 Msa0664600:CDS 25.0%
! TTTCCCTTTGATCTATAAAT+TGG + chr4_4:3611010-3611029 None:intergenic 25.0%
! TGATTGTGTCAAATAAATTG+TGG + chr4_4:3611353-3611372 None:intergenic 25.0%
! CAATTTATTTGACACAATCA+AGG - chr4_4:3611353-3611372 Msa0664600:intron 25.0%
!! TAGTAAATTTGCTTACTTTC+TGG - chr4_4:3611589-3611608 Msa0664600:intron 25.0%
!!! ATTCAGAATCTTTAGAATCT+AGG + chr4_4:3611805-3611824 None:intergenic 25.0%
!! AGATTCTAAAGATTCTGAAT+TGG - chr4_4:3611805-3611824 Msa0664600:intron 25.0%
! TTCTGGTAAAACACAAATAT+TGG - chr4_4:3611925-3611944 Msa0664600:intron 25.0%
! AATAACAAGAATATGCAAAG+TGG + chr4_4:3612021-3612040 None:intergenic 25.0%
!!! TCAAGAGTTACAGTTTTTTT+AGG - chr4_4:3612077-3612096 Msa0664600:intron 25.0%
!!! CAAGAGTTACAGTTTTTTTA+GGG - chr4_4:3612078-3612097 Msa0664600:intron 25.0%
! ATTTAACATGTATGTACACA+AGG - chr4_4:3612184-3612203 Msa0664600:CDS 25.0%
! CTCATTAAGAACAAGAATTA+TGG + chr4_4:3612246-3612265 None:intergenic 25.0%
AGAAGAAGAAAAAGAAGAGA+AGG + chr4_4:3608499-3608518 None:intergenic 30.0%
!! GTTCCTCTAAAACAAGAAAA+TGG - chr4_4:3608527-3608546 Msa0664600:three_prime_UTR 30.0%
!!! AACCCATTTTCTTGTTTTAG+AGG + chr4_4:3608533-3608552 None:intergenic 30.0%
AGATCCTTAGTTTATAGACT+AGG - chr4_4:3608916-3608935 Msa0664600:CDS 30.0%
ATCTCCTAGTCTATAAACTA+AGG + chr4_4:3608923-3608942 None:intergenic 30.0%
!! TTGTTTTATATAGGACTGGA+GGG + chr4_4:3609027-3609046 None:intergenic 30.0%
!!! TTTGTTTTATATAGGACTGG+AGG + chr4_4:3609028-3609047 None:intergenic 30.0%
! TTTTTATATATAGGACCGGA+GGG - chr4_4:3609091-3609110 Msa0664600:intron 30.0%
!!! TGCTCTATGTCTGAATTTTT+TGG - chr4_4:3609217-3609236 Msa0664600:intron 30.0%
! TTTCTCATCGTATTTTCTCT+CGG - chr4_4:3609546-3609565 Msa0664600:CDS 30.0%
!!! CTCTTTGTTTTTGCTTTACA+AGG - chr4_4:3609673-3609692 Msa0664600:CDS 30.0%
TAAGAAAGAATATAGGGCTT+TGG - chr4_4:3609762-3609781 Msa0664600:CDS 30.0%
! TTAAGTTTTGCAACTTTTCG+AGG - chr4_4:3609847-3609866 Msa0664600:CDS 30.0%
AAATACAATCCAAACGCATA+TGG + chr4_4:3609876-3609895 None:intergenic 30.0%
! ATTCATATTTTGTCGATGGT+TGG - chr4_4:3609919-3609938 Msa0664600:CDS 30.0%
! GTTACCTTTTCATTAACCAA+TGG - chr4_4:3609971-3609990 Msa0664600:intron 30.0%
! GTGATTGACTTATCAAAATG+AGG - chr4_4:3610034-3610053 Msa0664600:intron 30.0%
CATCTAAGGGAAAATATCTT+TGG + chr4_4:3610109-3610128 None:intergenic 30.0%
AGAAGAAGGAAATCATCTAA+GGG + chr4_4:3610122-3610141 None:intergenic 30.0%
! TGGGTTGAACAATTAATTTG+AGG + chr4_4:3610278-3610297 None:intergenic 30.0%
!!! TAAGTTTGTGTTTGGTTTTG+CGG + chr4_4:3610394-3610413 None:intergenic 30.0%
ACTACTACTAAGTTTGTGTT+TGG + chr4_4:3610402-3610421 None:intergenic 30.0%
! AGTTCTGACCATAAAAGATT+CGG - chr4_4:3610712-3610731 Msa0664600:intron 30.0%
CACATTCACGATCAATAATT+TGG - chr4_4:3610750-3610769 Msa0664600:intron 30.0%
! GTTTTGCTTATATTTCGTTC+TGG - chr4_4:3610777-3610796 Msa0664600:intron 30.0%
TTTGCTTATATTTCGTTCTG+GGG - chr4_4:3610779-3610798 Msa0664600:intron 30.0%
CCTGAGACATGAATTATATT+AGG + chr4_4:3610828-3610847 None:intergenic 30.0%
CCTAATATAATTCATGTCTC+AGG - chr4_4:3610825-3610844 Msa0664600:CDS 30.0%
TAAAAAAATTGCTGCTGTGA+AGG - chr4_4:3610940-3610959 Msa0664600:intron 30.0%
CGAACCAATTTATAGATCAA+AGG - chr4_4:3611003-3611022 Msa0664600:CDS 30.0%
GACTTTCTCATGTTTATTGA+AGG + chr4_4:3611055-3611074 None:intergenic 30.0%
TCAATAAACATGAGAAAGTC+AGG - chr4_4:3611055-3611074 Msa0664600:CDS 30.0%
CAATAAACATGAGAAAGTCA+GGG - chr4_4:3611056-3611075 Msa0664600:CDS 30.0%
! TAAATTGACCGTCTGATTTT+CGG + chr4_4:3611195-3611214 None:intergenic 30.0%
CATCATTATCATCATTTCCT+TGG + chr4_4:3611261-3611280 None:intergenic 30.0%
! CAAGGAAATGATGATAATGA+TGG - chr4_4:3611259-3611278 Msa0664600:intron 30.0%
!! GAGAAAGATTGGTATTGATA+AGG - chr4_4:3611324-3611343 Msa0664600:intron 30.0%
TTTATTTGACACAATCAAGG+TGG - chr4_4:3611356-3611375 Msa0664600:intron 30.0%
TTATTTGACACAATCAAGGT+GGG - chr4_4:3611357-3611376 Msa0664600:intron 30.0%
TTTCCTCTTAAAAATGTTGC+AGG - chr4_4:3611745-3611764 Msa0664600:intron 30.0%
!! TGTTTTTGTACCAGCAATTT+CGG - chr4_4:3611865-3611884 Msa0664600:intron 30.0%
! GTTTTTCTTGGAGATATAAG+GGG + chr4_4:3611999-3612018 None:intergenic 30.0%
! GGTTTTTCTTGGAGATATAA+GGG + chr4_4:3612000-3612019 None:intergenic 30.0%
! TGGTTTTTCTTGGAGATATA+AGG + chr4_4:3612001-3612020 None:intergenic 30.0%
! ATATGCAAAGTGGTTTTTCT+TGG + chr4_4:3612011-3612030 None:intergenic 30.0%
TAGATAAACATTCATCCCAA+TGG - chr4_4:3612319-3612338 Msa0664600:five_prime_UTR 30.0%
AGATAAACATTCATCCCAAT+GGG - chr4_4:3612320-3612339 Msa0664600:five_prime_UTR 30.0%
AAAAGAAAGAAAGTCCAGGT+AGG - chr4_4:3608378-3608397 Msa0664600:three_prime_UTR 35.0%
! ATCATTGTCAGTGAAAGTGT+CGG - chr4_4:3608415-3608434 Msa0664600:three_prime_UTR 35.0%
TAACAAACATAGTGAGAGTG+AGG + chr4_4:3608584-3608603 None:intergenic 35.0%
! CTTTTTATATATAGGACCGG+AGG - chr4_4:3609090-3609109 Msa0664600:intron 35.0%
ATTTGGACAGTGATACTGAT+AGG - chr4_4:3609120-3609139 Msa0664600:intron 35.0%
CAACAACTATACTAGAGTCT+AGG + chr4_4:3609154-3609173 None:intergenic 35.0%
!!! AATCTATTTTTATCGGGGAG+GGG + chr4_4:3609395-3609414 None:intergenic 35.0%
!!! CAATCTATTTTTATCGGGGA+GGG + chr4_4:3609396-3609415 None:intergenic 35.0%
!!! ACAATCTATTTTTATCGGGG+AGG + chr4_4:3609397-3609416 None:intergenic 35.0%
! AAACGGTGTTTTTCGTTCAA+AGG + chr4_4:3609429-3609448 None:intergenic 35.0%
!!! ACACCGTTTTAATTGAACCA+TGG - chr4_4:3609440-3609459 Msa0664600:CDS 35.0%
GCTCCATGGTTCAATTAAAA+CGG + chr4_4:3609446-3609465 None:intergenic 35.0%
!! AAAGAATATAGGGCTTTGGA+AGG - chr4_4:3609766-3609785 Msa0664600:CDS 35.0%
!! AAGAATATAGGGCTTTGGAA+GGG - chr4_4:3609767-3609786 Msa0664600:CDS 35.0%
! TGGACCATTGGTTAATGAAA+AGG + chr4_4:3609978-3609997 None:intergenic 35.0%
TTGAATGGTTTACCTGAGAT+AGG + chr4_4:3610009-3610028 None:intergenic 35.0%
AGTCAATCACAACGATTGAA+TGG + chr4_4:3610024-3610043 None:intergenic 35.0%
GAGAAGAAGGAAATCATCTA+AGG + chr4_4:3610123-3610142 None:intergenic 35.0%
! ATTTCTTTTGGTGGAGAAGA+AGG + chr4_4:3610136-3610155 None:intergenic 35.0%
TTCTTCTCCACCAAAAGAAA+TGG - chr4_4:3610135-3610154 Msa0664600:CDS 35.0%
! AATGACACCATTTCTTTTGG+TGG + chr4_4:3610145-3610164 None:intergenic 35.0%
!! TACAATACTGCATTGGCTTA+AGG + chr4_4:3610509-3610528 None:intergenic 35.0%
AACAGGGAAATGGAAAATGA+AGG + chr4_4:3610571-3610590 None:intergenic 35.0%
ACAAAAGAAGAACAGGGAAA+TGG + chr4_4:3610581-3610600 None:intergenic 35.0%
! TTGGTGACAAAAGAAGAACA+GGG + chr4_4:3610587-3610606 None:intergenic 35.0%
! ATTGGTGACAAAAGAAGAAC+AGG + chr4_4:3610588-3610607 None:intergenic 35.0%
TATCTGGACATGAAGCATAT+TGG + chr4_4:3610606-3610625 None:intergenic 35.0%
GTAATTGTGGCTAGATATCT+CGG - chr4_4:3610635-3610654 Msa0664600:intron 35.0%
TTGCTTATATTTCGTTCTGG+GGG - chr4_4:3610780-3610799 Msa0664600:intron 35.0%
ATAGATCAAAGGGAAACGTA+AGG - chr4_4:3611014-3611033 Msa0664600:CDS 35.0%
ATGAGAAAGTCAGGGAAAAA+AGG - chr4_4:3611064-3611083 Msa0664600:CDS 35.0%
ATACATTGCTAAGCATGCAA+TGG + chr4_4:3611101-3611120 None:intergenic 35.0%
ATTGCATGCTTAGCAATGTA+TGG - chr4_4:3611100-3611119 Msa0664600:intron 35.0%
CTTAGCAATGTATGGAAGTT+TGG - chr4_4:3611108-3611127 Msa0664600:intron 35.0%
TCGACAAGATCATGTATTTC+CGG + chr4_4:3611142-3611161 None:intergenic 35.0%
ACTTTAAGCCGAAAATCAGA+CGG - chr4_4:3611184-3611203 Msa0664600:intron 35.0%
GTTGAGATGTTGAACAAGAA+AGG - chr4_4:3611232-3611251 Msa0664600:intron 35.0%
AATCTCTTGTGCATTGAAAC+AGG + chr4_4:3611293-3611312 None:intergenic 35.0%
!! GCAGTGTTTTTGAGAAAGAT+TGG - chr4_4:3611313-3611332 Msa0664600:intron 35.0%
! TGATAGCCTTGATTCTCTTA+AGG - chr4_4:3611381-3611400 Msa0664600:intron 35.0%
!!! TCGTGTAAGTTTTAGGAAAC+AGG + chr4_4:3611408-3611427 None:intergenic 35.0%
GTTTCCTAAAACTTACACGA+AGG - chr4_4:3611408-3611427 Msa0664600:intron 35.0%
!! GATTTGCTAACTGTGTGAAT+GGG + chr4_4:3611527-3611546 None:intergenic 35.0%
AGACTATTCAAATGTGTGTG+CGG + chr4_4:3611689-3611708 None:intergenic 35.0%
!! ACTCCTGCAACATTTTTAAG+AGG + chr4_4:3611751-3611770 None:intergenic 35.0%
TGGTACAAAAACATCACTCT+CGG + chr4_4:3611858-3611877 None:intergenic 35.0%
! GTTTTTGTACCAGCAATTTC+GGG - chr4_4:3611866-3611885 Msa0664600:intron 35.0%
AGCCGTAATTTCAGATTCAT+CGG - chr4_4:3611952-3611971 Msa0664600:intron 35.0%
! AGCCGATGAATCTGAAATTA+CGG + chr4_4:3611957-3611976 None:intergenic 35.0%
!!! TACAGTTTTTTTAGGGCCTA+AGG - chr4_4:3612085-3612104 Msa0664600:intron 35.0%
ATCTGCAAACAAAAGACCTT+AGG + chr4_4:3612104-3612123 None:intergenic 35.0%
CACAAGGCTATTCACATATT+TGG - chr4_4:3612200-3612219 Msa0664600:CDS 35.0%
GATAAACATTCATCCCAATG+GGG - chr4_4:3612321-3612340 Msa0664600:five_prime_UTR 35.0%
GAAAGTCCAGGTAGGATATT+AGG - chr4_4:3608386-3608405 Msa0664600:three_prime_UTR 40.0%
GTTCTTCCTAATATCCTACC+TGG + chr4_4:3608395-3608414 None:intergenic 40.0%
! GATTTGAGACAAGTAGTTGC+TGG - chr4_4:3608555-3608574 Msa0664600:three_prime_UTR 40.0%
TGTCCAAATTATACTCCCTC+CGG + chr4_4:3609109-3609128 None:intergenic 40.0%
!! GGGGAAATTTGTTAGTAGCA+GGG + chr4_4:3609376-3609395 None:intergenic 40.0%
!! AGGGGAAATTTGTTAGTAGC+AGG + chr4_4:3609377-3609396 None:intergenic 40.0%
TAATATATTCGGCAGCTCCA+TGG + chr4_4:3609460-3609479 None:intergenic 40.0%
! ATGCAAGTGCTTTTCTGATC+CGG - chr4_4:3609585-3609604 Msa0664600:CDS 40.0%
TGACGAGTTAAAACCGTGTT+GGG - chr4_4:3609796-3609815 Msa0664600:CDS 40.0%
AATGGTTTACCTGAGATAGG+TGG + chr4_4:3610006-3610025 None:intergenic 40.0%
CAATTACTGCATCTGCTATC+TGG + chr4_4:3610622-3610641 None:intergenic 40.0%
GATAGCAGATGCAGTAATTG+TGG - chr4_4:3610622-3610641 Msa0664600:intron 40.0%
! TGCTTATATTTCGTTCTGGG+GGG - chr4_4:3610781-3610800 Msa0664600:intron 40.0%
TTCATGTCTCAGGAACTTTG+AGG - chr4_4:3610835-3610854 Msa0664600:CDS 40.0%
TGACGTGTTCATGAAAAGCA+TGG - chr4_4:3610871-3610890 Msa0664600:intron 40.0%
! GTGTTCATGAAAAGCATGGA+AGG - chr4_4:3610875-3610894 Msa0664600:intron 40.0%
CTATGTAATCTTCGGTAACC+CGG + chr4_4:3610973-3610992 None:intergenic 40.0%
GTGTCGAGCTATGTAATCTT+CGG + chr4_4:3610981-3611000 None:intergenic 40.0%
!! ACATGATCTTGTCGACTCAA+TGG - chr4_4:3611147-3611166 Msa0664600:intron 40.0%
!! TTGTCGACTCAATGGTTGAA+AGG - chr4_4:3611155-3611174 Msa0664600:intron 40.0%
AGACGGTCAATTTATTGCTG+TGG - chr4_4:3611201-3611220 Msa0664600:intron 40.0%
TTGAACAAGAAAGGTTGCCA+AGG - chr4_4:3611241-3611260 Msa0664600:intron 40.0%
ACAGGTCCTTAAGAGAATCA+AGG + chr4_4:3611390-3611409 None:intergenic 40.0%
! CTCACCTTCGTGTAAGTTTT+AGG + chr4_4:3611415-3611434 None:intergenic 40.0%
!! CGATTTGCTAACTGTGTGAA+TGG + chr4_4:3611528-3611547 None:intergenic 40.0%
TCACACAGTTAGCAAATCGA+TGG - chr4_4:3611529-3611548 Msa0664600:intron 40.0%
GTCGTAGGATTGAGATAAGA+CGG - chr4_4:3611551-3611570 Msa0664600:intron 40.0%
GACTATTCAAATGTGTGTGC+GGG + chr4_4:3611688-3611707 None:intergenic 40.0%
AACTTTGTCTTCTTATCCGC+CGG + chr4_4:3611782-3611801 None:intergenic 40.0%
TACAATAGACCCGAAATTGC+TGG + chr4_4:3611878-3611897 None:intergenic 40.0%
AACGTAGCTGGTAAAAGGAT+CGG - chr4_4:3611902-3611921 Msa0664600:intron 40.0%
! GATGAATCTGAAATTACGGC+TGG + chr4_4:3611953-3611972 None:intergenic 40.0%
!! GATCCTGCATTCATTGACTT+TGG - chr4_4:3612276-3612295 Msa0664600:five_prime_UTR 40.0%
TAGCCAAAGTCAATGAATGC+AGG + chr4_4:3612282-3612301 None:intergenic 40.0%
TACACTAAGTCAACCCCATT+GGG + chr4_4:3612337-3612356 None:intergenic 40.0%
ATACACTAAGTCAACCCCAT+TGG + chr4_4:3612338-3612357 None:intergenic 40.0%
ATACCACTGAGCTACACGTT+CGG + chr4_4:3609320-3609339 None:intergenic 45.0%
GTAGCTCAGTGGTATCAGTT+TGG - chr4_4:3609325-3609344 Msa0664600:intron 45.0%
GTTGCATCATCTGTTGATCC+TGG + chr4_4:3609710-3609729 None:intergenic 45.0%
CTGACGAGTTAAAACCGTGT+TGG - chr4_4:3609795-3609814 Msa0664600:CDS 45.0%
CTTGTGATCCCTGACATTAG+AGG - chr4_4:3610665-3610684 Msa0664600:intron 45.0%
! GTTGGCTTCCTCTAATGTCA+GGG + chr4_4:3610676-3610695 None:intergenic 45.0%
AGAACTAACCTCTTGTCACC+AGG + chr4_4:3610698-3610717 None:intergenic 45.0%
!! GCTTATATTTCGTTCTGGGG+GGG - chr4_4:3610782-3610801 Msa0664600:intron 45.0%
CTGGGGGGGAATATAATTCA+TGG - chr4_4:3610796-3610815 Msa0664600:CDS 45.0%
! CATGAAAAGCATGGAAGGAG+TGG - chr4_4:3610880-3610899 Msa0664600:intron 45.0%
AATCTTCGGTAACCCGGTTA+GGG + chr4_4:3610967-3610986 None:intergenic 45.0%
TAATCTTCGGTAACCCGGTT+AGG + chr4_4:3610968-3610987 None:intergenic 45.0%
ATGAGCACACACACACACAT+GGG - chr4_4:3611474-3611493 Msa0664600:intron 45.0%
TGCTAACTGTGTGAATGGGT+GGG + chr4_4:3611523-3611542 None:intergenic 45.0%
TTGCTAACTGTGTGAATGGG+TGG + chr4_4:3611524-3611543 None:intergenic 45.0%
GTTAGCAAATCGATGGTCGT+AGG - chr4_4:3611536-3611555 Msa0664600:intron 45.0%
GATCGTTGGATGAGATCAGA+CGG + chr4_4:3611616-3611635 None:intergenic 45.0%
GTCAGCAGATTAGTGATCGT+TGG + chr4_4:3611630-3611649 None:intergenic 45.0%
! GATCACTAATCTGCTGACTG+TGG - chr4_4:3611632-3611651 Msa0664600:intron 45.0%
TGGTGTGAGTTTGTGATTGC+AGG - chr4_4:3611652-3611671 Msa0664600:intron 45.0%
CTATTGTATGCGAACGTAGC+TGG - chr4_4:3611890-3611909 Msa0664600:intron 45.0%
ATGCGAACGTAGCTGGTAAA+AGG - chr4_4:3611897-3611916 Msa0664600:intron 45.0%
! GGACCGGAGGGAGTATAATT+TGG - chr4_4:3609103-3609122 Msa0664600:intron 50.0%
TACCACTGAGCTACACGTTC+GGG + chr4_4:3609319-3609338 None:intergenic 50.0%
! TTTGGACACCGATTGAGTCC+AGG - chr4_4:3609343-3609362 Msa0664600:intron 50.0%
! TTGGACACCGATTGAGTCCA+GGG - chr4_4:3609344-3609363 Msa0664600:intron 50.0%
GATCGAACCCTGGACTCAAT+CGG + chr4_4:3609354-3609373 None:intergenic 50.0%
TCGAGGAAGCCATATGCGTT+TGG - chr4_4:3609864-3609883 Msa0664600:CDS 50.0%
TAGGTGGTACTCTGGACCAT+TGG + chr4_4:3609990-3610009 None:intergenic 50.0%
! TCCAGAGTACCACCTATCTC+AGG - chr4_4:3609994-3610013 Msa0664600:intron 50.0%
ACCTGAGATAGGTGGTACTC+TGG + chr4_4:3609998-3610017 None:intergenic 50.0%
!! GGTTGGCTTCCTCTAATGTC+AGG + chr4_4:3610677-3610696 None:intergenic 50.0%
GACATTAGAGGAAGCCAACC+TGG - chr4_4:3610677-3610696 Msa0664600:intron 50.0%
CTAACCTCTTGTCACCAGGT+TGG + chr4_4:3610694-3610713 None:intergenic 50.0%
CATGGAAGGAGTGGTCAAAG+TGG - chr4_4:3610889-3610908 Msa0664600:intron 50.0%
! TGGAAGTTTGGAGTTGCAGC+CGG - chr4_4:3611120-3611139 Msa0664600:intron 50.0%
CATGAGCACACACACACACA+TGG - chr4_4:3611473-3611492 Msa0664600:intron 50.0%
CACACACACACACATGGGTT+TGG - chr4_4:3611479-3611498 Msa0664600:intron 50.0%
ATGGGTGGGATTGTAACTGC+AGG + chr4_4:3611509-3611528 None:intergenic 50.0%
GTTGCAGGAGTCAATCATGC+CGG - chr4_4:3611760-3611779 Msa0664600:intron 50.0%
! GCTGGTAAAAGGATCGGTTC+TGG - chr4_4:3611908-3611927 Msa0664600:intron 50.0%
ACCACTGAGCTACACGTTCG+GGG + chr4_4:3609318-3609337 None:intergenic 55.0%
TAGTAGCAGGGATCGAACCC+TGG + chr4_4:3609364-3609383 None:intergenic 55.0%
CCAGACGGCTTAACCCAACA+CGG + chr4_4:3609812-3609831 None:intergenic 55.0%
TGTTGGGTTAAGCCGTCTGG+AGG - chr4_4:3609812-3609831 Msa0664600:CDS 55.0%
TCGATGGTTGGCAGACGAAG+TGG - chr4_4:3609931-3609950 Msa0664600:CDS 55.0%
GACGAAGTGGAGCAGACAGA+CGG - chr4_4:3609944-3609963 Msa0664600:CDS 55.0%
ACGAAGTGGAGCAGACAGAC+GGG - chr4_4:3609945-3609964 Msa0664600:intron 55.0%
GAAGCCAACCTGGTGACAAG+AGG - chr4_4:3610687-3610706 Msa0664600:intron 55.0%
CTGCTGTGAAGGTCCCTAAC+CGG - chr4_4:3610951-3610970 Msa0664600:intron 55.0%
TGCTGTGAAGGTCCCTAACC+GGG - chr4_4:3610952-3610971 Msa0664600:intron 55.0%
GCTACACGTTCGGGGACACA+AGG + chr4_4:3609310-3609329 None:intergenic 60.0%
TCCCCGAACGTGTAGCTCAG+TGG - chr4_4:3609314-3609333 Msa0664600:intron 60.0%
CCGTGTTGGGTTAAGCCGTC+TGG - chr4_4:3609809-3609828 Msa0664600:CDS 60.0%
GCAGGAGTCAATCATGCCGG+CGG - chr4_4:3611763-3611782 Msa0664600:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 3608378 3612432 3608378 ID=Msa0664600;Name=Msa0664600
chr4_4 mRNA 3608378 3612432 3608378 ID=Msa0664600-mRNA-1;Parent=Msa0664600;Name=Msa0664600-mRNA-1;_AED=0.07;_eAED=0.07;_QI=168|1|1|1|1|1|6|387|419
chr4_4 exon 3608378 3609043 3608378 ID=Msa0664600-mRNA-1:exon:1235;Parent=Msa0664600-mRNA-1
chr4_4 exon 3609381 3609963 3609381 ID=Msa0664600-mRNA-1:exon:1234;Parent=Msa0664600-mRNA-1
chr4_4 exon 3610102 3610187 3610102 ID=Msa0664600-mRNA-1:exon:1233;Parent=Msa0664600-mRNA-1
chr4_4 exon 3610795 3610865 3610795 ID=Msa0664600-mRNA-1:exon:1232;Parent=Msa0664600-mRNA-1
chr4_4 exon 3610977 3611115 3610977 ID=Msa0664600-mRNA-1:exon:1231;Parent=Msa0664600-mRNA-1
chr4_4 exon 3612163 3612432 3612163 ID=Msa0664600-mRNA-1:exon:1230;Parent=Msa0664600-mRNA-1
chr4_4 five_prime_UTR 3612265 3612432 3612265 ID=Msa0664600-mRNA-1:five_prime_utr;Parent=Msa0664600-mRNA-1
chr4_4 CDS 3612163 3612264 3612163 ID=Msa0664600-mRNA-1:cds;Parent=Msa0664600-mRNA-1
chr4_4 CDS 3610977 3611115 3610977 ID=Msa0664600-mRNA-1:cds;Parent=Msa0664600-mRNA-1
chr4_4 CDS 3610795 3610865 3610795 ID=Msa0664600-mRNA-1:cds;Parent=Msa0664600-mRNA-1
chr4_4 CDS 3610102 3610187 3610102 ID=Msa0664600-mRNA-1:cds;Parent=Msa0664600-mRNA-1
chr4_4 CDS 3609381 3609963 3609381 ID=Msa0664600-mRNA-1:cds;Parent=Msa0664600-mRNA-1
chr4_4 CDS 3608765 3609043 3608765 ID=Msa0664600-mRNA-1:cds;Parent=Msa0664600-mRNA-1
chr4_4 three_prime_UTR 3608378 3608764 3608378 ID=Msa0664600-mRNA-1:three_prime_utr;Parent=Msa0664600-mRNA-1
Gene Sequence

>Msa0664600

ATGGGTTTTGATTTGAGACAAGTAGTTGCTGGTATCCTCACTCTCACTATGTTTGTTATGCTTATCCATATGATTAAAAGAGACCATTTTGATTCTGTTCAAGATAATAAATTTCCAGGATCAACAGATGATGCAACCTATGAAAATGTAAAGATGGATACTACACATGTAAGAAAGAATATAGGGCTTTGGAAGGGAGATACTGACGAGTTAAAACCGTGTTGGGTTAAGCCGTCTGGAGACGAAGTGGAGCAGACAGACGGGTTTGTTACCTTTTCATTAACCAATGGTCCAGAGTACCACCTATCTCAGATAGCAGATGCAGTAATTGTGGCTAGATATCTCGGAGCATCACTTGTGATCCCTGACATTAGAGGAAGCCAACCTGGTGACAAGAGGAACTTTGAGGATATTTATGATGTTGACGTGTTCATGAAAAGCATGGAAGGAGTGGTCAAAGTGGTAAAAGATCTTCCTTCTCATGTAACAACTAAAAAAATTGCTGCTGTGAAGGTCCCTAACCGGGTTACCGAAGATTACATAGCTCGACACGTCGAACCAATTTATAGATCAAAGGGAAACGTAAGGCTAGCGACTTACTTTCCTTCAATAAACATGAGAAAGTCAGGGAAAAAAGGTGACACTGATTCCATTGCATGCTTAGCAATGTATGGAAGTTTGGAGTTGCAGCCGGAAATACATGATCTTGTCGACTCAATGGTTGAAAGGCTTAGAACTTTAAGCCGAAAATCAGACGGTCAATTTATTGCTGTGGATTTGAGAGTTGAGATGTTGAACAAGAAAGGTTGCCAAGGAAATGATGATAATGATGGAGAGAAGACCTGTTTCAATGCACAAGAGATTGCAGTGTTTTTGAGAAAGATTGGTATTGATAAGGATACCACAATTTATTTGACACAATCAAGGTGGGATGATAGCCTTGATTCTCTTAAGGACCTGTTTCCTAAAACTTACACGAAGGAGTCAATCATGCCGGCGGATAAGAAGACAAAGTTCCTAGATTCTAAAGATTCTGAATTGGAGAATGTGATTGACTTTTACATTAGTACCGAGAGTGATGTTTTTGTACCAGCAATTTCGGGTCTATTGTATGCGAACGTAGCTGGTAAAAGGATCGGTTCTGGTAAAACACAAATATTGGTTCCAGCCGTAATTTCAGATTCATCGGCTTCAGCAACAAGTTTCTTGTCCCCTTATATCTCCAAGAAAAACCACTTTGCATATTCTTGTTATTGTTAG

Protein sequence

>Msa0664600

MGFDLRQVVAGILTLTMFVMLIHMIKRDHFDSVQDNKFPGSTDDATYENVKMDTTHVRKNIGLWKGDTDELKPCWVKPSGDEVEQTDGFVTFSLTNGPEYHLSQIADAVIVARYLGASLVIPDIRGSQPGDKRNFEDIYDVDVFMKSMEGVVKVVKDLPSHVTTKKIAAVKVPNRVTEDYIARHVEPIYRSKGNVRLATYFPSINMRKSGKKGDTDSIACLAMYGSLELQPEIHDLVDSMVERLRTLSRKSDGQFIAVDLRVEMLNKKGCQGNDDNDGEKTCFNAQEIAVFLRKIGIDKDTTIYLTQSRWDDSLDSLKDLFPKTYTKESIMPADKKTKFLDSKDSELENVIDFYISTESDVFVPAISGLLYANVAGKRIGSGKTQILVPAVISDSSASATSFLSPYISKKNHFAYSCYC*