Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553900 | ABP02611.1 | 71.111 | 45 | 13 | 0 | 66 | 110 | 12 | 56 | 4.56e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553900 | A4PRI1 | 71.111 | 45 | 13 | 0 | 66 | 110 | 12 | 56 | 2.18e-13 | 71.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0553900 | Msa0719080 | 0.861863 | 7.604737e-64 | -8.615850e-47 |
| Msa0553900 | Msa0719090 | 0.861453 | 1.015522e-63 | -8.615850e-47 |
| Msa0553900 | Msa0719390 | 0.834559 | 2.794353e-56 | -8.615850e-47 |
| Msa0553900 | Msa0789640 | 0.836051 | 1.173847e-56 | -8.615850e-47 |
| Msa0553900 | Msa1305900 | 0.839834 | 1.249967e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553900 | MtrunA17_Chr8g0392721 | 71.795 | 39 | 11 | 0 | 66 | 104 | 12 | 50 | 1.36e-15 | 67.0 |
| Msa0553900 | MtrunA17_Chr1g0199791 | 66.000 | 50 | 16 | 1 | 12 | 61 | 1 | 49 | 4.30e-12 | 56.6 |
| Msa0553900 | MtrunA17_Chr3g0120701 | 72.727 | 33 | 9 | 0 | 66 | 98 | 12 | 44 | 8.64e-12 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCGCAGCCTACTGCTGTT+GGG | 0.324874 | 4_1:+51195547 | Msa0553900:CDS |
| TTATTCTTCTCACCTCTTGC+CGG | 0.378620 | 4_1:+51192947 | Msa0553900:CDS |
| AACTTCTGTTTGTTCCTGTA+AGG | 0.384138 | 4_1:+51195497 | Msa0553900:CDS |
| TTGTCCACAACAGACCTTAC+AGG | 0.423953 | 4_1:-51195511 | None:intergenic |
| TTTCCGCAGCCTACTGCTGT+TGG | 0.429558 | 4_1:+51195546 | Msa0553900:CDS |
| TTGTGCGGCAGTTGCGGAGT+CGG | 0.437749 | 4_1:-51193006 | None:intergenic |
| ATAACCCTATGTGTTGTGTT+AGG | 0.454244 | 4_1:-51192928 | None:intergenic |
| TCCGCAGCCTACTGCTGTTG+GGG | 0.456756 | 4_1:+51195548 | Msa0553900:CDS |
| TGAACTCGGCGGCAGATCCA+TGG | 0.464437 | 4_1:+51192877 | Msa0553900:CDS |
| TCTTGGTGTGCAGTGTAGGC+TGG | 0.481877 | 4_1:+51195460 | Msa0553900:intron |
| ATCATCTCCTCACTGGAAAC+CGG | 0.502488 | 4_1:+51192851 | None:intergenic |
| TTGTTGTTGTGCGGCAGTTG+CGG | 0.505008 | 4_1:-51193012 | None:intergenic |
| TCTGCCGCCGAGTTCAGCGC+CGG | 0.543138 | 4_1:-51192870 | None:intergenic |
| CCGCAGCCTACTGCTGTTGG+GGG | 0.543395 | 4_1:+51195549 | Msa0553900:CDS |
| TGTTCCTGTAAGGTCTGTTG+TGG | 0.543606 | 4_1:+51195507 | Msa0553900:CDS |
| CTGGAAACCGGCGCTGAACT+CGG | 0.546923 | 4_1:+51192863 | Msa0553900:CDS |
| GGTGTGCAGTGTAGGCTGGA+GGG | 0.577637 | 4_1:+51195464 | Msa0553900:intron |
| GGCTGCGGAAACACAGACCT+GGG | 0.579722 | 4_1:-51195534 | None:intergenic |
| TCGGCGAGATGTGCGTGGAT+CGG | 0.580720 | 4_1:-51192987 | None:intergenic |
| ATGACCTTCGTAACTATCAC+CGG | 0.588059 | 4_1:+51193035 | Msa0553900:CDS |
| TGGTGTGCAGTGTAGGCTGG+AGG | 0.595874 | 4_1:+51195463 | Msa0553900:intron |
| AGGCTGCGGAAACACAGACC+TGG | 0.597241 | 4_1:-51195535 | None:intergenic |
| GAAGGTCATTTGTTGTTGTG+CGG | 0.601943 | 4_1:-51193021 | None:intergenic |
| CGGAGTCGGCGAGATGTGCG+TGG | 0.602009 | 4_1:-51192992 | None:intergenic |
| AGGACCTAACACAACACATA+GGG | 0.603430 | 4_1:+51192924 | Msa0553900:CDS |
| GAGGACCTAACACAACACAT+AGG | 0.616752 | 4_1:+51192923 | Msa0553900:CDS |
| AGGTCTGTTGTGGACAACCC+AGG | 0.617858 | 4_1:+51195517 | Msa0553900:CDS |
| AACGTCGAGACTCAAAGCCA+TGG | 0.624136 | 4_1:-51192894 | None:intergenic |
| GAGTCTCGACGTTCATAACG+AGG | 0.648715 | 4_1:+51192904 | Msa0553900:CDS |
| GTTACCGGTGATAGTTACGA+AGG | 0.714605 | 4_1:-51193039 | None:intergenic |
| GAAACCGGCGCTGAACTCGG+CGG | 0.757139 | 4_1:+51192866 | Msa0553900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATATATAAAAAGAAAT+TGG | - | chr4_1:51195444-51195463 | None:intergenic | 10.0% |
| !!! | AATTTCTTTTTATATATTCT+TGG | + | chr4_1:51195443-51195462 | Msa0553900:intron | 10.0% |
| !! | CTAAATAATTTCAACAAAAA+TGG | - | chr4_1:51193366-51193385 | None:intergenic | 15.0% |
| !! | AATATTAAACAATTCTGAAT+TGG | - | chr4_1:51194280-51194299 | None:intergenic | 15.0% |
| !! | TGTATTTCCTTAAATTTAAT+AGG | + | chr4_1:51194347-51194366 | Msa0553900:intron | 15.0% |
| !! | TAATTTCGAATTTGACATTA+GGG | + | chr4_1:51193110-51193129 | Msa0553900:intron | 20.0% |
| !!! | ATTTATGTTTTTCGAATAGT+AGG | + | chr4_1:51193392-51193411 | Msa0553900:intron | 20.0% |
| !!! | TCTTAAAGCTTTTAAATAGA+TGG | + | chr4_1:51193770-51193789 | Msa0553900:intron | 20.0% |
| !! | TGTGAAATTATCAAATTTGA+AGG | + | chr4_1:51193997-51194016 | Msa0553900:intron | 20.0% |
| !!! | GTCATTTGAGTTAAAATATT+TGG | + | chr4_1:51194157-51194176 | Msa0553900:intron | 20.0% |
| !! | TCCTTAAATTTAATAGGATT+TGG | + | chr4_1:51194353-51194372 | Msa0553900:intron | 20.0% |
| !!! | GATTTTCAATATTTGCTTTA+TGG | + | chr4_1:51194730-51194749 | Msa0553900:intron | 20.0% |
| !!! | TTTTTTTCTTGAATTGACTT+TGG | + | chr4_1:51194853-51194872 | Msa0553900:intron | 20.0% |
| !! | ACAAATAAATGTATGTTATG+TGG | - | chr4_1:51194904-51194923 | None:intergenic | 20.0% |
| !! | ACATAACATACATTTATTTG+TGG | + | chr4_1:51194903-51194922 | Msa0553900:intron | 20.0% |
| !! | CATAACATACATTTATTTGT+GGG | + | chr4_1:51194904-51194923 | Msa0553900:intron | 20.0% |
| !! | ATAACATACATTTATTTGTG+GGG | + | chr4_1:51194905-51194924 | Msa0553900:intron | 20.0% |
| !!! | TGTAGTTACAATAAGATTTT+GGG | + | chr4_1:51195389-51195408 | Msa0553900:intron | 20.0% |
| ! | CTAATTTCGAATTTGACATT+AGG | + | chr4_1:51193109-51193128 | Msa0553900:intron | 25.0% |
| ! | CTCAAACAAGATGATAAAAA+AGG | + | chr4_1:51193420-51193439 | Msa0553900:intron | 25.0% |
| ! | AGAGTGAAATAAAATGGAAA+AGG | - | chr4_1:51193492-51193511 | None:intergenic | 25.0% |
| !!! | CAAACTAACAAAACTTTTTC+TGG | - | chr4_1:51193729-51193748 | None:intergenic | 25.0% |
| !!! | CAGAAAAAGTTTTGTTAGTT+TGG | + | chr4_1:51193727-51193746 | Msa0553900:intron | 25.0% |
| !!! | CTATTTAAAAGCTTTAAGAC+AGG | - | chr4_1:51193769-51193788 | None:intergenic | 25.0% |
| ! | TTTCACAATGTCAAAATCAA+AGG | - | chr4_1:51193984-51194003 | None:intergenic | 25.0% |
| !!! | AGTTTTGAGAAAATGACTTA+CGG | - | chr4_1:51194056-51194075 | None:intergenic | 25.0% |
| ! | TAAATGCACTAAGTTACTAT+TGG | + | chr4_1:51194207-51194226 | Msa0553900:intron | 25.0% |
| ! | GCCAAATCCTATTAAATTTA+AGG | - | chr4_1:51194357-51194376 | None:intergenic | 25.0% |
| ! | AATTTATAACCACTTTGATC+AGG | - | chr4_1:51194569-51194588 | None:intergenic | 25.0% |
| ! | CCTAAAAATCAAAGTTTGAT+CGG | - | chr4_1:51194600-51194619 | None:intergenic | 25.0% |
| !!! | TTTTTCAATGCAAATCATGA+TGG | - | chr4_1:51194682-51194701 | None:intergenic | 25.0% |
| ! | CAACATAAGAAAACAATACA+TGG | - | chr4_1:51194711-51194730 | None:intergenic | 25.0% |
| ! | TCAATAACATGTAGAAATGA+TGG | - | chr4_1:51194784-51194803 | None:intergenic | 25.0% |
| ! | TGCTATCATATAATTTGATG+AGG | - | chr4_1:51194830-51194849 | None:intergenic | 25.0% |
| ! | ATAAATGTATGTTATGTGGA+TGG | - | chr4_1:51194900-51194919 | None:intergenic | 25.0% |
| ! | ATCAATTGATAAGAAATTGC+AGG | - | chr4_1:51195284-51195303 | None:intergenic | 25.0% |
| ! | TGCAATTTCTTATCAATTGA+TGG | + | chr4_1:51195283-51195302 | Msa0553900:intron | 25.0% |
| ! | ATATTTCGTGTATGAAATGT+TGG | + | chr4_1:51195323-51195342 | Msa0553900:intron | 25.0% |
| !! | GTGTAGTTACAATAAGATTT+TGG | + | chr4_1:51195388-51195407 | Msa0553900:intron | 25.0% |
| !! | GTAGTTACAATAAGATTTTG+GGG | + | chr4_1:51195390-51195409 | Msa0553900:intron | 25.0% |
| !! | TAGTTACAATAAGATTTTGG+GGG | + | chr4_1:51195391-51195410 | Msa0553900:intron | 25.0% |
| CAGTCAATATGAACATGAAT+CGG | - | chr4_1:51193078-51193097 | None:intergenic | 30.0% | |
| TAGCAGTTGCAATTTAACAT+AGG | + | chr4_1:51193271-51193290 | Msa0553900:intron | 30.0% | |
| CTTGGTAGAGTGAAATAAAA+TGG | - | chr4_1:51193498-51193517 | None:intergenic | 30.0% | |
| !! | AGTTGTGATCTTTGAGTTTT+AGG | + | chr4_1:51193554-51193573 | Msa0553900:intron | 30.0% |
| !! | GATCAGAAAGTATTGTAGTT+TGG | + | chr4_1:51193592-51193611 | Msa0553900:intron | 30.0% |
| TGACAATAACTATTTCCCTT+CGG | + | chr4_1:51193814-51193833 | Msa0553900:intron | 30.0% | |
| GAATCATCAGAAAAATAAGG+CGG | - | chr4_1:51193869-51193888 | None:intergenic | 30.0% | |
| !!! | GCCTTATTTTTCTGATGATT+CGG | + | chr4_1:51193868-51193887 | Msa0553900:intron | 30.0% |
| ACCGAATCATCAGAAAAATA+AGG | - | chr4_1:51193872-51193891 | None:intergenic | 30.0% | |
| ACATCTAAGAATTACCTCAA+TGG | - | chr4_1:51193900-51193919 | None:intergenic | 30.0% | |
| GAGAATGATATGATACCATA+CGG | - | chr4_1:51193928-51193947 | None:intergenic | 30.0% | |
| CAAACTGAAGGAAGTAAATT+AGG | - | chr4_1:51194450-51194469 | None:intergenic | 30.0% | |
| CTAATTTACTTCCTTCAGTT+TGG | + | chr4_1:51194448-51194467 | Msa0553900:intron | 30.0% | |
| TTGGGTTAATATACAACCTA+TGG | + | chr4_1:51194474-51194493 | Msa0553900:intron | 30.0% | |
| AAATTGAATCCTGATCAAAG+TGG | + | chr4_1:51194557-51194576 | Msa0553900:intron | 30.0% | |
| !! | CCGATCAAACTTTGATTTTT+AGG | + | chr4_1:51194597-51194616 | Msa0553900:intron | 30.0% |
| ! | TCTAAGACAGAACAGAATAA+GGG | - | chr4_1:51195224-51195243 | None:intergenic | 30.0% |
| ! | ATCTAAGACAGAACAGAATA+AGG | - | chr4_1:51195225-51195244 | None:intergenic | 30.0% |
| ATAACCCTATGTGTTGTGTT+AGG | - | chr4_1:51192931-51192950 | None:intergenic | 35.0% | |
| ! | GGTGAGAGAAATAGATTTTC+CGG | - | chr4_1:51192969-51192988 | None:intergenic | 35.0% |
| CAATATGAACATGAATCGGT+GGG | - | chr4_1:51193074-51193093 | None:intergenic | 35.0% | |
| TCAATATGAACATGAATCGG+TGG | - | chr4_1:51193075-51193094 | None:intergenic | 35.0% | |
| CAAAACAAAAGCTTGAAGCT+TGG | - | chr4_1:51193516-51193535 | None:intergenic | 35.0% | |
| !!! | AGCTTCAAGCTTTTGTTTTG+TGG | + | chr4_1:51193516-51193535 | Msa0553900:intron | 35.0% |
| GAGAGAATAGTAAATTCACC+TGG | - | chr4_1:51193707-51193726 | None:intergenic | 35.0% | |
| TCTAAGAATTACCTCAATGG+TGG | - | chr4_1:51193897-51193916 | None:intergenic | 35.0% | |
| GCTACAATGTCAAATAGCTA+TGG | + | chr4_1:51194019-51194038 | Msa0553900:intron | 35.0% | |
| CTCTCAATCTCTTATTGTAG+TGG | + | chr4_1:51194074-51194093 | Msa0553900:intron | 35.0% | |
| TGCTTATGATCACACAAATG+TGG | - | chr4_1:51194234-51194253 | None:intergenic | 35.0% | |
| ATATTCTTCACTCTCTCCAT+AGG | - | chr4_1:51194493-51194512 | None:intergenic | 35.0% | |
| GAATGCTTGCAAGAACAAAA+TGG | - | chr4_1:51194646-51194665 | None:intergenic | 35.0% | |
| ! | CATTTATTTGTGGGGTTTTG+TGG | + | chr4_1:51194913-51194932 | Msa0553900:intron | 35.0% |
| CTGTGAAAAATTCTAGCAGA+TGG | + | chr4_1:51195106-51195125 | Msa0553900:intron | 35.0% | |
| AAAGACAGACACAAAACACT+TGG | - | chr4_1:51195178-51195197 | None:intergenic | 35.0% | |
| CTAAGACAGAACAGAATAAG+GGG | - | chr4_1:51195223-51195242 | None:intergenic | 35.0% | |
| ATGAAATGTTGGACATGCTT+CGG | + | chr4_1:51195334-51195353 | Msa0553900:intron | 35.0% | |
| CTAGTTCATATTCATACCCT+TGG | - | chr4_1:51195360-51195379 | None:intergenic | 35.0% | |
| GGTATGAATATGAACTAGCA+TGG | + | chr4_1:51195362-51195381 | Msa0553900:intron | 35.0% | |
| AACTTCTGTTTGTTCCTGTA+AGG | + | chr4_1:51195497-51195516 | Msa0553900:CDS | 35.0% | |
| AGGACCTAACACAACACATA+GGG | + | chr4_1:51192924-51192943 | Msa0553900:CDS | 40.0% | |
| TTATTCTTCTCACCTCTTGC+CGG | + | chr4_1:51192947-51192966 | Msa0553900:CDS | 40.0% | |
| ! | GAAATAGATTTTCCGGCAAG+AGG | - | chr4_1:51192962-51192981 | None:intergenic | 40.0% |
| !! | GAAGGTCATTTGTTGTTGTG+CGG | - | chr4_1:51193024-51193043 | None:intergenic | 40.0% |
| ATGACCTTCGTAACTATCAC+CGG | + | chr4_1:51193035-51193054 | Msa0553900:CDS | 40.0% | |
| TAGTTTGGATTGAGTGCAGA+GGG | + | chr4_1:51193607-51193626 | Msa0553900:intron | 40.0% | |
| AATAAGGCGGCTTCACAATT+AGG | - | chr4_1:51193856-51193875 | None:intergenic | 40.0% | |
| TCTTAGATGTGCTTACCGTA+TGG | + | chr4_1:51193910-51193929 | Msa0553900:intron | 40.0% | |
| GTAGTGGTTGAATAGCTTCA+AGG | + | chr4_1:51194090-51194109 | Msa0553900:intron | 40.0% | |
| ACTTCCTTCAGTTTGGTTGT+TGG | + | chr4_1:51194455-51194474 | Msa0553900:intron | 40.0% | |
| CTTCCTTCAGTTTGGTTGTT+GGG | + | chr4_1:51194456-51194475 | Msa0553900:intron | 40.0% | |
| TAACCCAACAACCAAACTGA+AGG | - | chr4_1:51194462-51194481 | None:intergenic | 40.0% | |
| ! | ATATTCTTGGTGTGCAGTGT+AGG | + | chr4_1:51195456-51195475 | Msa0553900:intron | 40.0% |
| GAGGACCTAACACAACACAT+AGG | + | chr4_1:51192923-51192942 | Msa0553900:CDS | 45.0% | |
| GTTACCGGTGATAGTTACGA+AGG | - | chr4_1:51193042-51193061 | None:intergenic | 45.0% | |
| ATCACAACTGTCACTCTGTC+AGG | - | chr4_1:51193543-51193562 | None:intergenic | 45.0% | |
| GTAGTTTGGATTGAGTGCAG+AGG | + | chr4_1:51193606-51193625 | Msa0553900:intron | 45.0% | |
| ! | CAGAGGGATGCTTTTGATGT+TGG | + | chr4_1:51193623-51193642 | Msa0553900:intron | 45.0% |
| ! | GGGATGCTTTTGATGTTGGA+CGG | + | chr4_1:51193627-51193646 | Msa0553900:intron | 45.0% |
| ! | CTGGCTCTCATATTGTTGTC+AGG | - | chr4_1:51193688-51193707 | None:intergenic | 45.0% |
| CTGACAACAATATGAGAGCC+AGG | + | chr4_1:51193686-51193705 | Msa0553900:intron | 45.0% | |
| TTTCCAATGCACTCTCCGAA+GGG | - | chr4_1:51193832-51193851 | None:intergenic | 45.0% | |
| ! | TTTTCCAATGCACTCTCCGA+AGG | - | chr4_1:51193833-51193852 | None:intergenic | 45.0% |
| !! | TGATTCGGTTTCCACCATTG+AGG | + | chr4_1:51193883-51193902 | Msa0553900:intron | 45.0% |
| GCAGTGAACTGCATAACAAC+AGG | - | chr4_1:51194964-51194983 | None:intergenic | 45.0% | |
| CACTGCGTGCATTTCTGTTA+TGG | + | chr4_1:51194978-51194997 | Msa0553900:intron | 45.0% | |
| ! | ACCAGTTTTGCTGCTATGTG+TGG | + | chr4_1:51195012-51195031 | Msa0553900:intron | 45.0% |
| ACCACACATAGCAGCAAAAC+TGG | - | chr4_1:51195016-51195035 | None:intergenic | 45.0% | |
| ! | TTTTGCTGCTATGTGTGGTC+TGG | + | chr4_1:51195017-51195036 | Msa0553900:intron | 45.0% |
| TTTGCTGCTATGTGTGGTCT+GGG | + | chr4_1:51195018-51195037 | Msa0553900:intron | 45.0% | |
| TGTTCCTGTAAGGTCTGTTG+TGG | + | chr4_1:51195507-51195526 | Msa0553900:CDS | 45.0% | |
| TTGTCCACAACAGACCTTAC+AGG | - | chr4_1:51195514-51195533 | None:intergenic | 45.0% | |
| AACGTCGAGACTCAAAGCCA+TGG | - | chr4_1:51192897-51192916 | None:intergenic | 50.0% | |
| GAGTCTCGACGTTCATAACG+AGG | + | chr4_1:51192904-51192923 | Msa0553900:CDS | 50.0% | |
| ! | TTGTTGTTGTGCGGCAGTTG+CGG | - | chr4_1:51193015-51193034 | None:intergenic | 50.0% |
| GGTGGGAGAAAGTGAGTTAC+CGG | - | chr4_1:51193057-51193076 | None:intergenic | 50.0% | |
| TGATGTTGGACGGTGTTCAG+CGG | + | chr4_1:51193637-51193656 | Msa0553900:intron | 50.0% | |
| ! | TTTCCCTTCGGAGAGTGCAT+TGG | + | chr4_1:51193826-51193845 | Msa0553900:intron | 50.0% |
| !! | GGGTTTTGTGGCGTTTGTCT+CGG | + | chr4_1:51194925-51194944 | Msa0553900:intron | 50.0% |
| TGGCGTTTGTCTCGGCTGTT+TGG | + | chr4_1:51194933-51194952 | Msa0553900:intron | 55.0% | |
| GGCGTTTGTCTCGGCTGTTT+GGG | + | chr4_1:51194934-51194953 | Msa0553900:intron | 55.0% | |
| CTATGTGTGGTCTGGGCATG+TGG | + | chr4_1:51195025-51195044 | Msa0553900:intron | 55.0% | |
| TGTTGGACATGCTTCGGCCA+AGG | + | chr4_1:51195340-51195359 | Msa0553900:intron | 55.0% | |
| GTTGGACATGCTTCGGCCAA+GGG | + | chr4_1:51195341-51195360 | Msa0553900:intron | 55.0% | |
| ! | TCTTGGTGTGCAGTGTAGGC+TGG | + | chr4_1:51195460-51195479 | Msa0553900:intron | 55.0% |
| AGGTCTGTTGTGGACAACCC+AGG | + | chr4_1:51195517-51195536 | Msa0553900:CDS | 55.0% | |
| TTTCCGCAGCCTACTGCTGT+TGG | + | chr4_1:51195546-51195565 | Msa0553900:CDS | 55.0% | |
| TTCCGCAGCCTACTGCTGTT+GGG | + | chr4_1:51195547-51195566 | Msa0553900:CDS | 55.0% | |
| GGGGGAGTAGGTGATGTTCA+TGG | + | chr4_1:51195567-51195586 | Msa0553900:CDS | 55.0% | |
| ! | CTGGAAACCGGCGCTGAACT+CGG | + | chr4_1:51192863-51192882 | Msa0553900:CDS | 60.0% |
| TGAACTCGGCGGCAGATCCA+TGG | + | chr4_1:51192877-51192896 | Msa0553900:CDS | 60.0% | |
| TCGGCGAGATGTGCGTGGAT+CGG | - | chr4_1:51192990-51193009 | None:intergenic | 60.0% | |
| TTGTGCGGCAGTTGCGGAGT+CGG | - | chr4_1:51193009-51193028 | None:intergenic | 60.0% | |
| TGGTGTGCAGTGTAGGCTGG+AGG | + | chr4_1:51195463-51195482 | Msa0553900:intron | 60.0% | |
| GGTGTGCAGTGTAGGCTGGA+GGG | + | chr4_1:51195464-51195483 | Msa0553900:intron | 60.0% | |
| GGCTGCGGAAACACAGACCT+GGG | - | chr4_1:51195537-51195556 | None:intergenic | 60.0% | |
| AGGCTGCGGAAACACAGACC+TGG | - | chr4_1:51195538-51195557 | None:intergenic | 60.0% | |
| TCCGCAGCCTACTGCTGTTG+GGG | + | chr4_1:51195548-51195567 | Msa0553900:CDS | 60.0% | |
| CCTACTCCCCCAACAGCAGT+AGG | - | chr4_1:51195558-51195577 | None:intergenic | 60.0% | |
| CCTACTGCTGTTGGGGGAGT+AGG | + | chr4_1:51195555-51195574 | Msa0553900:CDS | 60.0% | |
| ! | GAAACCGGCGCTGAACTCGG+CGG | + | chr4_1:51192866-51192885 | Msa0553900:CDS | 65.0% |
| CCCCCAACAGCAGTAGGCTG+CGG | - | chr4_1:51195552-51195571 | None:intergenic | 65.0% | |
| CCGCAGCCTACTGCTGTTGG+GGG | + | chr4_1:51195549-51195568 | Msa0553900:CDS | 65.0% | |
| TCTGCCGCCGAGTTCAGCGC+CGG | - | chr4_1:51192873-51192892 | None:intergenic | 70.0% | |
| CGGAGTCGGCGAGATGTGCG+TGG | - | chr4_1:51192995-51193014 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 51192863 | 51195611 | 51192863 | ID=Msa0553900;Name=Msa0553900 |
| chr4_1 | mRNA | 51192863 | 51195611 | 51192863 | ID=Msa0553900-mRNA-1;Parent=Msa0553900;Name=Msa0553900-mRNA-1;_AED=0.69;_eAED=0.69;_QI=0|0|0|0.5|1|1|2|0|110 |
| chr4_1 | exon | 51192863 | 51193056 | 51192863 | ID=Msa0553900-mRNA-1:exon:14618;Parent=Msa0553900-mRNA-1 |
| chr4_1 | exon | 51195473 | 51195611 | 51195473 | ID=Msa0553900-mRNA-1:exon:14619;Parent=Msa0553900-mRNA-1 |
| chr4_1 | CDS | 51192863 | 51193056 | 51192863 | ID=Msa0553900-mRNA-1:cds;Parent=Msa0553900-mRNA-1 |
| chr4_1 | CDS | 51195473 | 51195611 | 51195473 | ID=Msa0553900-mRNA-1:cds;Parent=Msa0553900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
