Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719390 | XP_024639768.1 | 55.764 | 373 | 74 | 9 | 1 | 284 | 1 | 371 | 1.09e-104 | 330 |
| Msa0719390 | XP_024639768.1 | 75.329 | 304 | 46 | 5 | 199 | 499 | 61 | 338 | 1.51e-143 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719390 | A0A396HS21 | 78.988 | 257 | 32 | 3 | 251 | 504 | 22 | 259 | 8.43e-130 | 387 |
| Msa0719390 | A0A396HS21 | 81.395 | 129 | 22 | 2 | 126 | 253 | 112 | 239 | 9.61e-56 | 196 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063040 | Msa0719390 | 0.802339 | 5.880193e-49 | -8.615850e-47 |
| Msa0719080 | Msa0719390 | 0.965777 | 4.783650e-125 | -8.615850e-47 |
| Msa0719090 | Msa0719390 | 0.965364 | 1.650938e-124 | -8.615850e-47 |
| Msa0719390 | Msa0789640 | 0.998887 | 1.637335e-280 | -8.615850e-47 |
| Msa0719390 | Msa0850750 | 0.810964 | 8.868745e-51 | -8.615850e-47 |
| Msa0719390 | Msa0913860 | 0.804096 | 2.545613e-49 | -8.615850e-47 |
| Msa0719390 | Msa0914840 | 0.837553 | 4.856544e-57 | -8.615850e-47 |
| Msa0719390 | Msa0988690 | 0.812457 | 4.198944e-51 | -8.615850e-47 |
| Msa0719390 | Msa1077610 | 0.869362 | 3.276822e-66 | -8.615850e-47 |
| Msa0719390 | Msa1077620 | 0.813953 | 1.971938e-51 | -8.615850e-47 |
| Msa0719390 | Msa1138460 | 0.846111 | 2.665890e-59 | -8.615850e-47 |
| Msa0719390 | Msa1240320 | 0.815464 | 9.122609e-52 | -8.615850e-47 |
| Msa0719390 | Msa1305900 | 0.998567 | 5.451218e-269 | -8.615850e-47 |
| Msa0719390 | Msa1338620 | 0.839657 | 1.390248e-57 | -8.615850e-47 |
| Msa0719390 | Msa1394840 | 0.858907 | 5.965450e-63 | -8.615850e-47 |
| Msa0427350 | Msa0719390 | 0.811712 | 6.104652e-51 | -8.615850e-47 |
| Msa0242320 | Msa0719390 | 0.809756 | 1.616378e-50 | -8.615850e-47 |
| Msa0269940 | Msa0719390 | 0.800959 | 1.128073e-48 | -8.615850e-47 |
| Msa0500520 | Msa0719390 | 0.820142 | 8.018073e-53 | -8.615850e-47 |
| Msa0500530 | Msa0719390 | 0.801164 | 1.024352e-48 | -8.615850e-47 |
| Msa0553900 | Msa0719390 | 0.834559 | 2.794353e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719390 | MtrunA17_Chr5g0409951 | 78.988 | 257 | 32 | 3 | 251 | 504 | 22 | 259 | 1.62e-133 | 387 |
| Msa0719390 | MtrunA17_Chr5g0409951 | 81.395 | 129 | 22 | 2 | 126 | 253 | 112 | 239 | 1.85e-59 | 196 |
| Msa0719390 | MtrunA17_Chr5g0440821 | 77.246 | 167 | 27 | 3 | 339 | 494 | 28 | 194 | 1.01e-71 | 245 |
| Msa0719390 | MtrunA17_Chr5g0440821 | 67.857 | 168 | 25 | 4 | 114 | 253 | 18 | 184 | 8.23e-53 | 192 |
| Msa0719390 | MtrunA17_Chr5g0440821 | 62.162 | 74 | 14 | 3 | 1 | 70 | 1 | 64 | 1.04e-13 | 73.9 |
| Msa0719390 | MtrunA17_Chr5g0440751 | 61.677 | 167 | 27 | 3 | 329 | 495 | 8 | 137 | 1.06e-50 | 171 |
| Msa0719390 | MtrunA17_Chr5g0440751 | 63.704 | 135 | 30 | 4 | 120 | 253 | 10 | 126 | 1.58e-35 | 131 |
| Msa0719390 | MtrunA17_Chr5g0440721 | 54.598 | 174 | 30 | 4 | 322 | 495 | 7 | 131 | 8.68e-42 | 147 |
| Msa0719390 | MtrunA17_Chr5g0440721 | 54.167 | 144 | 34 | 4 | 111 | 253 | 8 | 120 | 3.29e-29 | 112 |
| Msa0719390 | MtrunA17_Chr5g0440721 | 43.571 | 140 | 30 | 6 | 1 | 104 | 1 | 127 | 1.98e-14 | 71.2 |
| Msa0719390 | MtrunA17_Chr5g0409941 | 75.238 | 105 | 19 | 3 | 1 | 98 | 1 | 105 | 1.36e-39 | 139 |
| Msa0719390 | MtrunA17_Chr5g0409941 | 85.714 | 42 | 5 | 1 | 331 | 372 | 34 | 74 | 3.53e-16 | 74.3 |
| Msa0719390 | MtrunA17_Chr5g0409941 | 84.848 | 33 | 5 | 0 | 450 | 482 | 74 | 106 | 3.00e-11 | 60.5 |
| Msa0719390 | MtrunA17_Chr5g0440731 | 51.000 | 100 | 40 | 2 | 249 | 340 | 13 | 111 | 6.74e-17 | 81.3 |
| Msa0719390 | MtrunA17_Chr5g0440741 | 50.000 | 100 | 36 | 3 | 249 | 340 | 13 | 106 | 9.93e-16 | 77.8 |
| Msa0719390 | MtrunA17_Chr5g0409841 | 41.176 | 119 | 50 | 4 | 257 | 359 | 4 | 118 | 6.45e-15 | 74.3 |
| Msa0719390 | MtrunA17_Chr5g0409831 | 45.977 | 87 | 43 | 3 | 257 | 343 | 4 | 86 | 1.15e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 148 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACATGATTCTTAGGTTT+TGG | 0.214289 | 5_1:-14647950 | None:intergenic |
| TCAACATGATTCTTAGGTTT+TGG | 0.216772 | 5_1:-14650044 | None:intergenic |
| GAAACTTTCTCAACATTCTT+AGG | 0.220690 | 5_1:-14648590 | None:intergenic |
| TTCTCAACATTCTTAGGTTT+TGG | 0.226512 | 5_1:-14648584 | None:intergenic |
| TCATTATCAACATGATTCTT+AGG | 0.228118 | 5_1:-14650050 | None:intergenic |
| CCCTAGAGCTCCTTCTGTTC+AGG | 0.266787 | 5_1:+14648664 | Msa0719390:CDS |
| ACATTCTCAACATGATTCTT+AGG | 0.266972 | 5_1:-14647956 | None:intergenic |
| GCTTTCCCACCTGGTTGTTC+AGG | 0.273808 | 5_1:+14649203 | Msa0719390:CDS |
| CAAAGAGAGAGAATAGAAAA+AGG | 0.274706 | 5_1:+14649931 | Msa0719390:CDS |
| TCCTAGAGCTCCTTCTGTTC+AGG | 0.288148 | 5_1:+14650118 | Msa0719390:CDS |
| AAACAGAAGTTAAACTGTTC+TGG | 0.303211 | 5_1:+14650521 | Msa0719390:intron |
| GACGTTCCTGTGTTGGTTGC+TGG | 0.314360 | 5_1:+14647890 | Msa0719390:CDS |
| TCACCTTGTCTTGCTGCCAC+TGG | 0.327183 | 5_1:-14648052 | None:intergenic |
| TATGCTTTCCCACCTGGTTC+AGG | 0.329227 | 5_1:+14647992 | Msa0719390:CDS |
| TATGCTTTCCCACCTGGTTC+AGG | 0.329227 | 5_1:+14650707 | Msa0719390:CDS |
| TTTATTTAAATTAGTCTTAC+GGG | 0.332638 | 5_1:-14649742 | None:intergenic |
| CAACAGAAGTCAAACGGTTC+TGG | 0.334816 | 5_1:+14649071 | Msa0719390:intron |
| CCTGCTGCCACCGGGGATAC+AGG | 0.343744 | 5_1:-14649254 | None:intergenic |
| GTAAGACTAATTTAAATAAA+CGG | 0.344589 | 5_1:+14649745 | Msa0719390:CDS |
| TTGAAGAGAGGGCCAAGTTT+TGG | 0.345165 | 5_1:+14647827 | Msa0719390:CDS |
| GCTCATTTAAATCAATTTGA+TGG | 0.348445 | 5_1:-14648439 | None:intergenic |
| CCTGCATATGCTTTCCCACC+TGG | 0.358776 | 5_1:+14649194 | Msa0719390:CDS |
| CCTGCATATGCTTTCCCACC+TGG | 0.358776 | 5_1:+14650701 | Msa0719390:CDS |
| CACCTTGTCCTGCTGCCACC+GGG | 0.363220 | 5_1:-14649262 | None:intergenic |
| GATGTTCCTGTGTTGGTTGT+TGG | 0.372353 | 5_1:+14648524 | Msa0719390:CDS |
| CCTGCATATGCTTTCCCACC+TGG | 0.375591 | 5_1:+14647986 | Msa0719390:CDS |
| CACCTTGTCTTGCTGCCACT+GGG | 0.379729 | 5_1:-14648051 | None:intergenic |
| CTTGCTGCCACTGGGAATAC+AGG | 0.380506 | 5_1:-14648043 | None:intergenic |
| TGGAAAATGTTTGTCATCAA+TGG | 0.380623 | 5_1:-14650807 | None:intergenic |
| TAAGACTAATTTAAATAAAC+GGG | 0.381254 | 5_1:+14649746 | Msa0719390:CDS |
| TGCTATGCTCAGAGGGATCT+TGG | 0.382368 | 5_1:-14649776 | None:intergenic |
| CGAACATTGCGCTTGGGGCC+TGG | 0.387615 | 5_1:-14649140 | None:intergenic |
| TGAGATGGAGGTCGAGTAAC+AGG | 0.387968 | 5_1:-14650668 | None:intergenic |
| TTACTGTTGCGCTTGGGGCC+TGG | 0.395341 | 5_1:-14650590 | None:intergenic |
| AATTATGGTGATTGCTGATA+AGG | 0.402409 | 5_1:+14647772 | None:intergenic |
| GGATTCTCACCATTCGGATA+AGG | 0.417277 | 5_1:-14650731 | None:intergenic |
| TTTGTGTTACTGTTGCGCTT+GGG | 0.420054 | 5_1:-14650596 | None:intergenic |
| GTTTATTTAAATTAGTCTTA+CGG | 0.420223 | 5_1:-14649743 | None:intergenic |
| TGACACCGATATAATTAAGT+TGG | 0.420892 | 5_1:+14649824 | Msa0719390:CDS |
| ACGATCCAACTTAATTATAT+CGG | 0.421412 | 5_1:-14649829 | None:intergenic |
| TCACCTTGTCCTGCTGCCAC+CGG | 0.427981 | 5_1:-14649263 | None:intergenic |
| CCTGCTGCCACCGGAGATAC+AGG | 0.429981 | 5_1:-14650758 | None:intergenic |
| TTTGGGGCATGACTTTCTCC+TGG | 0.432296 | 5_1:-14649912 | None:intergenic |
| ATTTGTGTTACTGTTGCGCT+TGG | 0.435565 | 5_1:-14650597 | None:intergenic |
| GGATTAGTACCATTCGGATA+AGG | 0.436901 | 5_1:-14649227 | None:intergenic |
| GGCTTAGGATTCTCACCATT+CGG | 0.437848 | 5_1:-14650737 | None:intergenic |
| ACAGGACGAACATTGCGCTT+GGG | 0.437958 | 5_1:-14649146 | None:intergenic |
| ATAGGATCTTGGACTGAAAC+CGG | 0.448717 | 5_1:-14648461 | None:intergenic |
| GGCTTAGGATTAGTACCATT+CGG | 0.449867 | 5_1:-14649233 | None:intergenic |
| GATGTTCCTGTGTTGGTTGT+CGG | 0.459995 | 5_1:+14649984 | Msa0719390:CDS |
| CCTGTATCCCCGGTGGCAGC+AGG | 0.463627 | 5_1:+14649254 | Msa0719390:CDS |
| CGGTGTCAAATTTCTCCTGT+TGG | 0.467114 | 5_1:-14649809 | None:intergenic |
| CACAGGACGAACATTGCGCT+TGG | 0.470103 | 5_1:-14649147 | None:intergenic |
| GAATCCTAAGCCTGTATCTC+CGG | 0.475680 | 5_1:+14650748 | Msa0719390:CDS |
| CCTGTATCTCCGGTGGCAGC+AGG | 0.482035 | 5_1:+14650758 | Msa0719390:CDS |
| ATCTGAGGTGGAGGTGCCAC+AGG | 0.482175 | 5_1:-14649164 | None:intergenic |
| TAGCATGGAACAACACCAAC+AGG | 0.482562 | 5_1:+14649794 | Msa0719390:CDS |
| GCTGTTTCTGTGCCTAGTGT+TGG | 0.486767 | 5_1:+14650086 | Msa0719390:CDS |
| TCAAATTGATTTAAATGAGC+CGG | 0.491679 | 5_1:+14648442 | Msa0719390:CDS |
| TAAGAATCATGTTGATAATG+AGG | 0.491746 | 5_1:+14650052 | Msa0719390:CDS |
| ACAGGCGGCTGCTGATGATA+AGG | 0.497930 | 5_1:-14650650 | None:intergenic |
| ACCTGAACAGAAGGAGCTCT+AGG | 0.498160 | 5_1:-14648665 | None:intergenic |
| TCACCACACAAACAAAAGCC+AGG | 0.499595 | 5_1:+14650572 | Msa0719390:CDS |
| GGATTCTCACCATTCAGATA+AGG | 0.502739 | 5_1:-14648016 | None:intergenic |
| ATTCAAGCTGAGTCAGTACC+AGG | 0.506755 | 5_1:+14649894 | Msa0719390:CDS |
| GTTTGAGCATCAGAAAGAAC+TGG | 0.508546 | 5_1:-14647926 | None:intergenic |
| AAGCGCAACAGTAACACAAA+TGG | 0.509649 | 5_1:+14650599 | Msa0719390:CDS |
| CCTGAACAGAAGGAGCTCTA+GGG | 0.512468 | 5_1:-14648664 | None:intergenic |
| TCCCCGGTGGCAGCAGGACA+AGG | 0.513079 | 5_1:+14649260 | Msa0719390:CDS |
| GTTGAGAAAGTTTCTGCTAA+GGG | 0.514785 | 5_1:+14648599 | Msa0719390:CDS |
| TTGTGTTACTGTTGCGCTTG+GGG | 0.516114 | 5_1:-14650595 | None:intergenic |
| TAGAAAGCACGGAACGAAGA+AGG | 0.519265 | 5_1:+14649703 | Msa0719390:intron |
| TCCGTGGAGACATAGGATCT+TGG | 0.520218 | 5_1:-14648472 | None:intergenic |
| GCCACTGGGAATACAGGCTT+AGG | 0.525101 | 5_1:-14648037 | None:intergenic |
| TTCAGATAAGGTCCTGAACC+AGG | 0.526807 | 5_1:-14648004 | None:intergenic |
| AGAAAGAGCTGGCCAAGACT+TGG | 0.528166 | 5_1:-14648549 | None:intergenic |
| CTTAAATCAATATTGAAGAG+AGG | 0.529776 | 5_1:+14647815 | Msa0719390:CDS |
| TGTTGAGAAAGTTTCTGCTA+AGG | 0.531640 | 5_1:+14648598 | Msa0719390:CDS |
| CAGGACGAACATTGCGCTTG+GGG | 0.533224 | 5_1:-14649145 | None:intergenic |
| AGAAAGAGCTGGCCAAGACT+TGG | 0.534366 | 5_1:-14650009 | None:intergenic |
| GGTGATGTCATCTTATTCAT+CGG | 0.534902 | 5_1:-14650554 | None:intergenic |
| TAATCCTAAGCCTGTATCCC+CGG | 0.538156 | 5_1:+14649244 | Msa0719390:CDS |
| GCCACCGGGGATACAGGCTT+AGG | 0.538751 | 5_1:-14649248 | None:intergenic |
| GCAGTTTCTGTGCCTAGTGT+AGG | 0.538987 | 5_1:+14648632 | Msa0719390:CDS |
| TGTCTGTTCCGTGGAGACAT+AGG | 0.543654 | 5_1:-14648479 | None:intergenic |
| GCCACCGGAGATACAGGCTT+AGG | 0.545376 | 5_1:-14650752 | None:intergenic |
| TCATCACGCTATCAAAAGCC+AGG | 0.546703 | 5_1:+14649122 | Msa0719390:CDS |
| TTGTCATCAATGGCACGAGC+AGG | 0.548498 | 5_1:-14650797 | None:intergenic |
| AACAAACGAACCTGAACAGA+AGG | 0.548968 | 5_1:-14650128 | None:intergenic |
| TGGTTGTCGGTACCAAGTCT+TGG | 0.550500 | 5_1:+14649997 | Msa0719390:CDS |
| TTAAATCAATATTGAAGAGA+GGG | 0.551911 | 5_1:+14647816 | Msa0719390:CDS |
| GTGATTCAACAGAAGTCAAA+CGG | 0.553306 | 5_1:+14649065 | Msa0719390:intron |
| TGGTTGTTGGAACCAAGTCT+TGG | 0.553347 | 5_1:+14648537 | Msa0719390:CDS |
| GGTTCAGGACCTTATCTGAA+TGG | 0.559427 | 5_1:+14648007 | Msa0719390:CDS |
| AAACCTTGTCCTGCTGCCAC+CGG | 0.561642 | 5_1:-14650767 | None:intergenic |
| TTCGGATAAGGTCCTGAACC+AGG | 0.561660 | 5_1:-14650719 | None:intergenic |
| TCTCCGGTGGCAGCAGGACA+AGG | 0.563672 | 5_1:+14650764 | Msa0719390:CDS |
| TGTTCCATGCTATGCTCAGA+GGG | 0.566140 | 5_1:-14649783 | None:intergenic |
| GGAAGAGCAATCTGAGGTGG+AGG | 0.569429 | 5_1:-14649173 | None:intergenic |
| AACAAACTAACCTGAACAGA+AGG | 0.569589 | 5_1:-14648674 | None:intergenic |
| TTCCCAGTGGCAGCAAGACA+AGG | 0.570857 | 5_1:+14648049 | Msa0719390:CDS |
| TGGTTGCTGGAACTAAGTCT+TGG | 0.574249 | 5_1:+14647903 | Msa0719390:CDS |
| ACCTGAACAGAAGGAGCTCT+AGG | 0.574556 | 5_1:-14650119 | None:intergenic |
| CAAGCGCAATGTTCGTCCTG+TGG | 0.574699 | 5_1:+14649148 | Msa0719390:CDS |
| CATTTAAATCAATTTGATGG+AGG | 0.575538 | 5_1:-14648436 | None:intergenic |
| TCATCAATGGCACGAGCAGG+TGG | 0.575928 | 5_1:-14650794 | None:intergenic |
| AAGAATCATGTTGATAATGA+GGG | 0.578626 | 5_1:+14650053 | Msa0719390:CDS |
| AAGTGTTGATGTTCCTGTGT+TGG | 0.580284 | 5_1:+14648517 | Msa0719390:CDS |
| AAGTGTTGATGTTCCTGTGT+TGG | 0.580284 | 5_1:+14649977 | Msa0719390:CDS |
| AAATGATGACGTTCCTGTGT+TGG | 0.580522 | 5_1:+14647883 | Msa0719390:CDS |
| CCAGGTGGGAAAGCATATGC+AGG | 0.582086 | 5_1:-14647986 | None:intergenic |
| CAGAAGGAGCTCTAGGAGCA+AGG | 0.582504 | 5_1:-14650112 | None:intergenic |
| TTGTTCCATGCTATGCTCAG+AGG | 0.583511 | 5_1:-14649784 | None:intergenic |
| CCAGGTGGGAAAGCATATGC+AGG | 0.588904 | 5_1:-14650701 | None:intergenic |
| CCAGGTGGGAAAGCATATGC+AGG | 0.591343 | 5_1:-14649194 | None:intergenic |
| GTTTGAGCATCAGAAAGAGC+TGG | 0.591524 | 5_1:-14648560 | None:intergenic |
| GTTTGAACATCAGAAAGAGC+TGG | 0.591524 | 5_1:-14650020 | None:intergenic |
| GCAGGAACAGCAATGTGAGA+TGG | 0.592310 | 5_1:-14650683 | None:intergenic |
| AGATCCCTCTGAGCATAGCA+TGG | 0.596307 | 5_1:+14649779 | Msa0719390:CDS |
| GGAGCAAGGTGACCAACACT+AGG | 0.606495 | 5_1:-14650098 | None:intergenic |
| CTGAACAGAAGGAGCTCTAG+GGG | 0.611281 | 5_1:-14648663 | None:intergenic |
| TCCAAGATCCTATGTCTCCA+CGG | 0.613629 | 5_1:+14648471 | Msa0719390:CDS |
| TGTTCAGGACCTTATCCGAA+TGG | 0.616249 | 5_1:+14649218 | Msa0719390:CDS |
| GCAGGAAGAGCAATCTGAGG+TGG | 0.628210 | 5_1:-14649176 | None:intergenic |
| GGGGTAACGTGACCTACACT+AGG | 0.628823 | 5_1:-14648644 | None:intergenic |
| GATTGCTGATAAGGACAAGA+GGG | 0.630743 | 5_1:+14647781 | Msa0719390:CDS |
| GGAACAGCAATGTGAGATGG+AGG | 0.639975 | 5_1:-14650680 | None:intergenic |
| TCCTAAGCCTGTATCTCCGG+TGG | 0.640309 | 5_1:+14650751 | Msa0719390:CDS |
| GGTTCAGGACCTTATCCGAA+TGG | 0.640623 | 5_1:+14650722 | Msa0719390:CDS |
| AAGCACGGAACGAAGAAGGA+AGG | 0.644921 | 5_1:+14649707 | Msa0719390:CDS |
| TTAGTTCCAGCAACCAACAC+AGG | 0.650533 | 5_1:-14647896 | None:intergenic |
| TGATTGCTGATAAGGACAAG+AGG | 0.652218 | 5_1:+14647780 | Msa0719390:CDS |
| TTGGTACCGACAACCAACAC+AGG | 0.652825 | 5_1:-14649990 | None:intergenic |
| GATAAGGTCCTGAACCAGGT+GGG | 0.657071 | 5_1:-14648000 | None:intergenic |
| GATAAGGTCCTGAACCAGGT+GGG | 0.657071 | 5_1:-14650715 | None:intergenic |
| GGATAAGGTCCTGAACAACC+AGG | 0.662311 | 5_1:-14649212 | None:intergenic |
| TTGGTTCCAACAACCAACAC+AGG | 0.665985 | 5_1:-14648530 | None:intergenic |
| CCAACACTATGTCTGTTCCG+TGG | 0.667873 | 5_1:-14648488 | None:intergenic |
| CCACGGAACAGACATAGTGT+TGG | 0.674520 | 5_1:+14648488 | Msa0719390:CDS |
| AAGGTCCTGAACAACCAGGT+GGG | 0.679074 | 5_1:-14649208 | None:intergenic |
| ACCTTGTCCTGCTGCCACCG+GGG | 0.684672 | 5_1:-14649261 | None:intergenic |
| AGATAAGGTCCTGAACCAGG+TGG | 0.691288 | 5_1:-14648001 | None:intergenic |
| TCCTAAGCCTGTATTCCCAG+TGG | 0.691555 | 5_1:+14648036 | Msa0719390:CDS |
| TCCTAAGCCTGTATCCCCGG+TGG | 0.692551 | 5_1:+14649247 | Msa0719390:CDS |
| GGATAAGGTCCTGAACCAGG+TGG | 0.699303 | 5_1:-14650716 | None:intergenic |
| TAAGGTCCTGAACAACCAGG+TGG | 0.716289 | 5_1:-14649209 | None:intergenic |
| TATGCAGGAAGAGCAATCTG+AGG | 0.717586 | 5_1:-14649179 | None:intergenic |
| GATGGAGGTCGAGTAACAGG+CGG | 0.719570 | 5_1:-14650665 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTTAACTTACATAAT+TGG | + | chr5_1:14648221-14648240 | Msa0719390:intron | 15.0% |
| !!! | AATTCTTATAGTTGTTTTTT+TGG | + | chr5_1:14648401-14648420 | Msa0719390:intron | 15.0% |
| !!! | ATTTTGTTAACTTACATAAT+TGG | + | chr5_1:14648221-14648240 | Msa0719390:intron | 15.0% |
| !!! | TTTATTTAAATTAGTCTTAC+GGG | - | chr5_1:14649745-14649764 | None:intergenic | 15.0% |
| !!! | GTTTATTTAAATTAGTCTTA+CGG | - | chr5_1:14649746-14649765 | None:intergenic | 15.0% |
| !! | GTAAGACTAATTTAAATAAA+CGG | + | chr5_1:14649745-14649764 | Msa0719390:CDS | 15.0% |
| !! | TAAGACTAATTTAAATAAAC+GGG | + | chr5_1:14649746-14649765 | Msa0719390:CDS | 15.0% |
| !!! | TCATATTTTTTTTTCTTCAT+TGG | + | chr5_1:14650409-14650428 | Msa0719390:intron | 15.0% |
| !! | TTAAATCAATATTGAAGAGA+GGG | + | chr5_1:14647816-14647835 | Msa0719390:CDS | 20.0% |
| !!! | AAGTTTTGGTAAGAAAAAAA+GGG | + | chr5_1:14647841-14647860 | Msa0719390:CDS | 20.0% |
| !! | ATTATGATATCTTCTCATTA+TGG | + | chr5_1:14648166-14648185 | Msa0719390:intron | 20.0% |
| !! | TGTAAGTTAACAAAATTACT+TGG | - | chr5_1:14648217-14648236 | None:intergenic | 20.0% |
| !! | AAGAATTAAGAAGATTTAAC+TGG | + | chr5_1:14648320-14648339 | Msa0719390:intron | 20.0% |
| !!! | CATGCATAATATTTTTTGAA+TGG | - | chr5_1:14648363-14648382 | None:intergenic | 20.0% |
| !! | TGTAAGTTAACAAAATTACT+TGG | - | chr5_1:14648217-14648236 | None:intergenic | 20.0% |
| !!! | ATTTTTTTAACTCGCATAAT+TGG | + | chr5_1:14649490-14649509 | Msa0719390:intron | 20.0% |
| !! | AAGAATTAAGAAGATTTAAC+TGG | + | chr5_1:14648320-14648339 | Msa0719390:intron | 20.0% |
| !!! | CATGCATAATATTTTTTGAA+TGG | - | chr5_1:14648363-14648382 | None:intergenic | 20.0% |
| !!! | GTTTTTTTATATAGAAAGCA+CGG | + | chr5_1:14649692-14649711 | Msa0719390:intron | 20.0% |
| ! | CTTAAATCAATATTGAAGAG+AGG | + | chr5_1:14647815-14647834 | Msa0719390:CDS | 25.0% |
| !!! | CTTTTTTTCTTACCAAAACT+TGG | - | chr5_1:14647842-14647861 | None:intergenic | 25.0% |
| !!! | CAAGTTTTGGTAAGAAAAAA+AGG | + | chr5_1:14647840-14647859 | Msa0719390:CDS | 25.0% |
| ! | TAAGAAAAAAAGGGTTCTTT+GGG | + | chr5_1:14647850-14647869 | Msa0719390:CDS | 25.0% |
| ! | CATTTAAATCAATTTGATGG+AGG | - | chr5_1:14648439-14648458 | None:intergenic | 25.0% |
| ! | GCTCATTTAAATCAATTTGA+TGG | - | chr5_1:14648442-14648461 | None:intergenic | 25.0% |
| !! | TCAAATTGATTTAAATGAGC+CGG | + | chr5_1:14648442-14648461 | Msa0719390:CDS | 25.0% |
| ! | TTCTTATGCTTGCAATAATA+TGG | - | chr5_1:14648840-14648859 | None:intergenic | 25.0% |
| ! | TAGAGTCGACAAATTTATTT+AGG | + | chr5_1:14648929-14648948 | Msa0719390:intron | 25.0% |
| !! | TTTTACATTATTGCTAACTC+TGG | + | chr5_1:14648996-14649015 | Msa0719390:intron | 25.0% |
| ! | TTTACATTATTGCTAACTCT+GGG | + | chr5_1:14648997-14649016 | Msa0719390:intron | 25.0% |
| ! | TCATTATGATATCTTCTTTG+TGG | + | chr5_1:14649375-14649394 | Msa0719390:intron | 25.0% |
| !! | TGTCGATATAATTCGAATTT+TGG | + | chr5_1:14649650-14649669 | Msa0719390:intron | 25.0% |
| ! | TGGTTTCAAATTCATATAGT+TGG | + | chr5_1:14649670-14649689 | Msa0719390:intron | 25.0% |
| ! | ACGATCCAACTTAATTATAT+CGG | - | chr5_1:14649832-14649851 | None:intergenic | 25.0% |
| !! | TTTTTCTATTCTCTCTCTTT+GGG | - | chr5_1:14649932-14649951 | None:intergenic | 25.0% |
| ! | AAAGAGAGAGAATAGAAAAA+GGG | + | chr5_1:14649932-14649951 | Msa0719390:CDS | 25.0% |
| ! | TCATTATCAACATGATTCTT+AGG | - | chr5_1:14650053-14650072 | None:intergenic | 25.0% |
| !!! | TAAGAATCATGTTGATAATG+AGG | + | chr5_1:14650052-14650071 | Msa0719390:CDS | 25.0% |
| !!! | AAGAATCATGTTGATAATGA+GGG | + | chr5_1:14650053-14650072 | Msa0719390:CDS | 25.0% |
| !! | TTAGTGTAATGTGATTTTGA+TGG | + | chr5_1:14650205-14650224 | Msa0719390:intron | 25.0% |
| ! | TTCTTATGCTTGCAATAATA+TGG | - | chr5_1:14648840-14648859 | None:intergenic | 25.0% |
| ! | AGTCAACCAGTAAAAAATAT+TGG | + | chr5_1:14650364-14650383 | Msa0719390:intron | 25.0% |
| ! | TTCTACAATATTGTTAACTC+TGG | + | chr5_1:14650446-14650465 | Msa0719390:intron | 25.0% |
| ! | TCTACAATATTGTTAACTCT+GGG | + | chr5_1:14650447-14650466 | Msa0719390:intron | 25.0% |
| GTAAGAAAAAAAGGGTTCTT+TGG | + | chr5_1:14647849-14647868 | Msa0719390:CDS | 30.0% | |
| ! | TCAACATGATTCTTAGGTTT+TGG | - | chr5_1:14647953-14647972 | None:intergenic | 30.0% |
| ACATTCTCAACATGATTCTT+AGG | - | chr5_1:14647959-14647978 | None:intergenic | 30.0% | |
| GCAACTAAAAGTCATTTCAA+TGG | - | chr5_1:14648111-14648130 | None:intergenic | 30.0% | |
| ! | TCTCATTATGGTTCTGTAAT+TGG | + | chr5_1:14648178-14648197 | Msa0719390:intron | 30.0% |
| !! | CTGTAATTGGTTTGAGTAAT+TGG | + | chr5_1:14648191-14648210 | Msa0719390:intron | 30.0% |
| ! | AGGCATAGTTGATTTCATTA+AGG | + | chr5_1:14648260-14648279 | Msa0719390:intron | 30.0% |
| ! | TTCTCAACATTCTTAGGTTT+TGG | - | chr5_1:14648587-14648606 | None:intergenic | 30.0% |
| GAAACTTTCTCAACATTCTT+AGG | - | chr5_1:14648593-14648612 | None:intergenic | 30.0% | |
| !!! | GTTTTTTATCTTTCCTTCGA+TGG | + | chr5_1:14648959-14648978 | Msa0719390:intron | 30.0% |
| !! | ACAACTTTTATTTCCATCGA+AGG | - | chr5_1:14648975-14648994 | None:intergenic | 30.0% |
| !! | CTGTAATTGGTTTGAGTAAT+TGG | + | chr5_1:14648191-14648210 | Msa0719390:intron | 30.0% |
| ! | AGGCATAGTTGATTTCATTA+AGG | + | chr5_1:14648260-14648279 | Msa0719390:intron | 30.0% |
| TGACACCGATATAATTAAGT+TGG | + | chr5_1:14649824-14649843 | Msa0719390:CDS | 30.0% | |
| ! | TTTTCTATTCTCTCTCTTTG+GGG | - | chr5_1:14649931-14649950 | None:intergenic | 30.0% |
| ! | CTTTTTCTATTCTCTCTCTT+TGG | - | chr5_1:14649933-14649952 | None:intergenic | 30.0% |
| CAAAGAGAGAGAATAGAAAA+AGG | + | chr5_1:14649931-14649950 | Msa0719390:CDS | 30.0% | |
| ! | TCAACATGATTCTTAGGTTT+TGG | - | chr5_1:14647953-14647972 | None:intergenic | 30.0% |
| !!! | GACTCTCCAATATTTTTTAC+TGG | - | chr5_1:14650373-14650392 | None:intergenic | 30.0% |
| AAACAGAAGTTAAACTGTTC+TGG | + | chr5_1:14650521-14650540 | Msa0719390:intron | 30.0% | |
| TGGAAAATGTTTGTCATCAA+TGG | - | chr5_1:14650810-14650829 | None:intergenic | 30.0% | |
| !!! | GCATCGTTTTTTGAGTAAAC+CGG | + | chr5_1:14648282-14648301 | Msa0719390:intron | 35.0% |
| !!! | CATCGTTTTTTGAGTAAACC+GGG | + | chr5_1:14648283-14648302 | Msa0719390:intron | 35.0% |
| TGTTGAGAAAGTTTCTGCTA+AGG | + | chr5_1:14648598-14648617 | Msa0719390:CDS | 35.0% | |
| GTTGAGAAAGTTTCTGCTAA+GGG | + | chr5_1:14648599-14648618 | Msa0719390:CDS | 35.0% | |
| AACAAACTAACCTGAACAGA+AGG | - | chr5_1:14648677-14648696 | None:intergenic | 35.0% | |
| ! | TTTGCCTGATTTTCTGTGTA+TGG | + | chr5_1:14649038-14649057 | Msa0719390:intron | 35.0% |
| AGATCCATACACAGAAAATC+AGG | - | chr5_1:14649045-14649064 | None:intergenic | 35.0% | |
| GTGATTCAACAGAAGTCAAA+CGG | + | chr5_1:14649065-14649084 | Msa0719390:intron | 35.0% | |
| TTGCTTTGATACCATTGAAG+TGG | + | chr5_1:14649308-14649327 | Msa0719390:intron | 35.0% | |
| ! | CTTCTTTGTGGTTCTGTAAT+TGG | + | chr5_1:14649387-14649406 | Msa0719390:intron | 35.0% |
| ! | TTGGCTAGTTCATCTGATTA+AGG | + | chr5_1:14649449-14649468 | Msa0719390:intron | 35.0% |
| TAGTTCATCTGATTAAGGCT+TGG | + | chr5_1:14649454-14649473 | Msa0719390:intron | 35.0% | |
| ! | TTGGCTAGTTGATCTGATTA+AGG | + | chr5_1:14649509-14649528 | Msa0719390:intron | 35.0% |
| ! | AGAATAGAAAAAGGGTGCAT+TGG | + | chr5_1:14649940-14649959 | Msa0719390:CDS | 35.0% |
| ! | GAATAGAAAAAGGGTGCATT+GGG | + | chr5_1:14649941-14649960 | Msa0719390:CDS | 35.0% |
| GAGAGTCGACAAATTTATGT+AGG | + | chr5_1:14650386-14650405 | Msa0719390:intron | 35.0% | |
| ! | TTTGCCTGATTTTCTGTGTA+TGG | + | chr5_1:14649038-14649057 | Msa0719390:intron | 35.0% |
| AGATCCATACACAGAAAATC+AGG | - | chr5_1:14649045-14649064 | None:intergenic | 35.0% | |
| GGTGATGTCATCTTATTCAT+CGG | - | chr5_1:14650557-14650576 | None:intergenic | 35.0% | |
| TGATTGCTGATAAGGACAAG+AGG | + | chr5_1:14647780-14647799 | Msa0719390:CDS | 40.0% | |
| GATTGCTGATAAGGACAAGA+GGG | + | chr5_1:14647781-14647800 | Msa0719390:CDS | 40.0% | |
| ! | AAATGATGACGTTCCTGTGT+TGG | + | chr5_1:14647883-14647902 | Msa0719390:CDS | 40.0% |
| GTTTGAGCATCAGAAAGAAC+TGG | - | chr5_1:14647929-14647948 | None:intergenic | 40.0% | |
| GGATTCTCACCATTCAGATA+AGG | - | chr5_1:14648019-14648038 | None:intergenic | 40.0% | |
| ! | TTGGCTAGCTCATCTGATTA+AGG | + | chr5_1:14648240-14648259 | Msa0719390:intron | 40.0% |
| !!! | TTTTTTGAGTAAACCGGGTG+AGG | + | chr5_1:14648288-14648307 | Msa0719390:intron | 40.0% |
| ATAGGATCTTGGACTGAAAC+CGG | - | chr5_1:14648464-14648483 | None:intergenic | 40.0% | |
| !! | AAGTGTTGATGTTCCTGTGT+TGG | + | chr5_1:14648517-14648536 | Msa0719390:CDS | 40.0% |
| ! | GGATTAGTACCATTCGGATA+AGG | - | chr5_1:14649230-14649249 | None:intergenic | 40.0% |
| ! | GGCTTAGGATTAGTACCATT+CGG | - | chr5_1:14649236-14649255 | None:intergenic | 40.0% |
| GCAACTAAAAGCCACTTCAA+TGG | - | chr5_1:14649322-14649341 | None:intergenic | 40.0% | |
| !!! | GCATCGTTTTTTGAGTGAAC+CGG | + | chr5_1:14649551-14649570 | Msa0719390:intron | 40.0% |
| !!! | CATCGTTTTTTGAGTGAACC+GGG | + | chr5_1:14649552-14649571 | Msa0719390:intron | 40.0% |
| !! | AAGTGTTGATGTTCCTGTGT+TGG | + | chr5_1:14648517-14648536 | Msa0719390:CDS | 40.0% |
| GTTTGAACATCAGAAAGAGC+TGG | - | chr5_1:14650023-14650042 | None:intergenic | 40.0% | |
| AACAAACGAACCTGAACAGA+AGG | - | chr5_1:14650131-14650150 | None:intergenic | 40.0% | |
| ! | TTTGTGTTACTGTTGCGCTT+GGG | - | chr5_1:14650599-14650618 | None:intergenic | 40.0% |
| ! | ATTTGTGTTACTGTTGCGCT+TGG | - | chr5_1:14650600-14650619 | None:intergenic | 40.0% |
| AAGCGCAACAGTAACACAAA+TGG | + | chr5_1:14650599-14650618 | Msa0719390:CDS | 40.0% | |
| ! | AAACATTTTCCAAGCTTCCC+AGG | + | chr5_1:14650818-14650837 | Msa0719390:CDS | 40.0% |
| ! | GAAATTTTACCTGGGAAGCT+TGG | - | chr5_1:14650830-14650849 | None:intergenic | 40.0% |
| ! | TTGAAGAGAGGGCCAAGTTT+TGG | + | chr5_1:14647827-14647846 | Msa0719390:CDS | 45.0% |
| TTAGTTCCAGCAACCAACAC+AGG | - | chr5_1:14647899-14647918 | None:intergenic | 45.0% | |
| TGGTTGCTGGAACTAAGTCT+TGG | + | chr5_1:14647903-14647922 | Msa0719390:CDS | 45.0% | |
| TTCAGATAAGGTCCTGAACC+AGG | - | chr5_1:14648007-14648026 | None:intergenic | 45.0% | |
| GGTTCAGGACCTTATCTGAA+TGG | + | chr5_1:14648007-14648026 | Msa0719390:CDS | 45.0% | |
| TCCAAGATCCTATGTCTCCA+CGG | + | chr5_1:14648471-14648490 | Msa0719390:CDS | 45.0% | |
| !! | GATGTTCCTGTGTTGGTTGT+TGG | + | chr5_1:14648524-14648543 | Msa0719390:CDS | 45.0% |
| TTGGTTCCAACAACCAACAC+AGG | - | chr5_1:14648533-14648552 | None:intergenic | 45.0% | |
| TGGTTGTTGGAACCAAGTCT+TGG | + | chr5_1:14648537-14648556 | Msa0719390:CDS | 45.0% | |
| GTTTGAGCATCAGAAAGAGC+TGG | - | chr5_1:14648563-14648582 | None:intergenic | 45.0% | |
| CAACAGAAGTCAAACGGTTC+TGG | + | chr5_1:14649071-14649090 | Msa0719390:intron | 45.0% | |
| !!! | GGCTTTTGATAGCGTGATGA+TGG | - | chr5_1:14649122-14649141 | None:intergenic | 45.0% |
| TCATCACGCTATCAAAAGCC+AGG | + | chr5_1:14649122-14649141 | Msa0719390:CDS | 45.0% | |
| TATGCAGGAAGAGCAATCTG+AGG | - | chr5_1:14649182-14649201 | None:intergenic | 45.0% | |
| TGTTCAGGACCTTATCCGAA+TGG | + | chr5_1:14649218-14649237 | Msa0719390:CDS | 45.0% | |
| TAATCCTAAGCCTGTATCCC+CGG | + | chr5_1:14649244-14649263 | Msa0719390:CDS | 45.0% | |
| !!! | TTTTTTGAGTGAACCGGGTG+AGG | + | chr5_1:14649557-14649576 | Msa0719390:intron | 45.0% |
| ! | TAGAAAGCACGGAACGAAGA+AGG | + | chr5_1:14649703-14649722 | Msa0719390:intron | 45.0% |
| TGTTCCATGCTATGCTCAGA+GGG | - | chr5_1:14649786-14649805 | None:intergenic | 45.0% | |
| TTGTTCCATGCTATGCTCAG+AGG | - | chr5_1:14649787-14649806 | None:intergenic | 45.0% | |
| TAGCATGGAACAACACCAAC+AGG | + | chr5_1:14649794-14649813 | Msa0719390:CDS | 45.0% | |
| ! | CGGTGTCAAATTTCTCCTGT+TGG | - | chr5_1:14649812-14649831 | None:intergenic | 45.0% |
| ATTCAAGCTGAGTCAGTACC+AGG | + | chr5_1:14649894-14649913 | Msa0719390:CDS | 45.0% | |
| !! | GATGTTCCTGTGTTGGTTGT+CGG | + | chr5_1:14648524-14648543 | Msa0719390:CDS | 45.0% |
| TCACCACACAAACAAAAGCC+AGG | + | chr5_1:14650572-14650591 | Msa0719390:CDS | 45.0% | |
| ! | TTGTGTTACTGTTGCGCTTG+GGG | - | chr5_1:14650598-14650617 | None:intergenic | 45.0% |
| GGATTCTCACCATTCGGATA+AGG | - | chr5_1:14650734-14650753 | None:intergenic | 45.0% | |
| GGCTTAGGATTCTCACCATT+CGG | - | chr5_1:14648025-14648044 | None:intergenic | 45.0% | |
| GAATCCTAAGCCTGTATCTC+CGG | + | chr5_1:14650748-14650767 | Msa0719390:CDS | 45.0% | |
| !! | TTAAAAAAATTAAAATTACT+TGG | - | chr5_1:14649480-14649499 | None:intergenic | 5.0% |
| TATGCTTTCCCACCTGGTTC+AGG | + | chr5_1:14647992-14648011 | Msa0719390:CDS | 50.0% | |
| GATAAGGTCCTGAACCAGGT+GGG | - | chr5_1:14648003-14648022 | None:intergenic | 50.0% | |
| AGATAAGGTCCTGAACCAGG+TGG | - | chr5_1:14648004-14648023 | None:intergenic | 50.0% | |
| TCCTAAGCCTGTATTCCCAG+TGG | + | chr5_1:14648036-14648055 | Msa0719390:CDS | 50.0% | |
| TCCGTGGAGACATAGGATCT+TGG | - | chr5_1:14648475-14648494 | None:intergenic | 50.0% | |
| TGTCTGTTCCGTGGAGACAT+AGG | - | chr5_1:14648482-14648501 | None:intergenic | 50.0% | |
| CCAACACTATGTCTGTTCCG+TGG | - | chr5_1:14648491-14648510 | None:intergenic | 50.0% | |
| CCACGGAACAGACATAGTGT+TGG | + | chr5_1:14648488-14648507 | Msa0719390:CDS | 50.0% | |
| AGAAAGAGCTGGCCAAGACT+TGG | - | chr5_1:14648552-14648571 | None:intergenic | 50.0% | |
| GCAGTTTCTGTGCCTAGTGT+AGG | + | chr5_1:14648632-14648651 | Msa0719390:CDS | 50.0% | |
| ! | CTGAACAGAAGGAGCTCTAG+GGG | - | chr5_1:14648666-14648685 | None:intergenic | 50.0% |
| CCTGAACAGAAGGAGCTCTA+GGG | - | chr5_1:14648667-14648686 | None:intergenic | 50.0% | |
| ACCTGAACAGAAGGAGCTCT+AGG | - | chr5_1:14648668-14648687 | None:intergenic | 50.0% | |
| ACAGGACGAACATTGCGCTT+GGG | - | chr5_1:14649149-14649168 | None:intergenic | 50.0% | |
| AAGGTCCTGAACAACCAGGT+GGG | - | chr5_1:14649211-14649230 | None:intergenic | 50.0% | |
| TAAGGTCCTGAACAACCAGG+TGG | - | chr5_1:14649212-14649231 | None:intergenic | 50.0% | |
| GGATAAGGTCCTGAACAACC+AGG | - | chr5_1:14649215-14649234 | None:intergenic | 50.0% | |
| AAGCACGGAACGAAGAAGGA+AGG | + | chr5_1:14649707-14649726 | Msa0719390:CDS | 50.0% | |
| TGCTATGCTCAGAGGGATCT+TGG | - | chr5_1:14649779-14649798 | None:intergenic | 50.0% | |
| AGATCCCTCTGAGCATAGCA+TGG | + | chr5_1:14649779-14649798 | Msa0719390:CDS | 50.0% | |
| ! | TTTGGGGCATGACTTTCTCC+TGG | - | chr5_1:14649915-14649934 | None:intergenic | 50.0% |
| !! | TTGGTACCGACAACCAACAC+AGG | - | chr5_1:14649993-14650012 | None:intergenic | 50.0% |
| TGGTTGTCGGTACCAAGTCT+TGG | + | chr5_1:14649997-14650016 | Msa0719390:CDS | 50.0% | |
| AGAAAGAGCTGGCCAAGACT+TGG | - | chr5_1:14648552-14648571 | None:intergenic | 50.0% | |
| !! | GCTGTTTCTGTGCCTAGTGT+TGG | + | chr5_1:14650086-14650105 | Msa0719390:CDS | 50.0% |
| TCCTAGAGCTCCTTCTGTTC+AGG | + | chr5_1:14650118-14650137 | Msa0719390:CDS | 50.0% | |
| ACCTGAACAGAAGGAGCTCT+AGG | - | chr5_1:14648668-14648687 | None:intergenic | 50.0% | |
| !! | CGTCTCACTTTTCTGTGTCG+AGG | + | chr5_1:14650624-14650643 | Msa0719390:CDS | 50.0% |
| TGAGATGGAGGTCGAGTAAC+AGG | - | chr5_1:14650671-14650690 | None:intergenic | 50.0% | |
| GGAACAGCAATGTGAGATGG+AGG | - | chr5_1:14650683-14650702 | None:intergenic | 50.0% | |
| GCAGGAACAGCAATGTGAGA+TGG | - | chr5_1:14650686-14650705 | None:intergenic | 50.0% | |
| TATGCTTTCCCACCTGGTTC+AGG | + | chr5_1:14647992-14648011 | Msa0719390:CDS | 50.0% | |
| GATAAGGTCCTGAACCAGGT+GGG | - | chr5_1:14648003-14648022 | None:intergenic | 50.0% | |
| TTCGGATAAGGTCCTGAACC+AGG | - | chr5_1:14650722-14650741 | None:intergenic | 50.0% | |
| GGTTCAGGACCTTATCCGAA+TGG | + | chr5_1:14650722-14650741 | Msa0719390:CDS | 50.0% | |
| TTGTCATCAATGGCACGAGC+AGG | - | chr5_1:14650800-14650819 | None:intergenic | 50.0% | |
| !! | GACGTTCCTGTGTTGGTTGC+TGG | + | chr5_1:14647890-14647909 | Msa0719390:CDS | 55.0% |
| ! | CCAGGTGGGAAAGCATATGC+AGG | - | chr5_1:14647989-14648008 | None:intergenic | 55.0% |
| CCTGCATATGCTTTCCCACC+TGG | + | chr5_1:14647986-14648005 | Msa0719390:CDS | 55.0% | |
| GCCACTGGGAATACAGGCTT+AGG | - | chr5_1:14648040-14648059 | None:intergenic | 55.0% | |
| CTTGCTGCCACTGGGAATAC+AGG | - | chr5_1:14648046-14648065 | None:intergenic | 55.0% | |
| TTCCCAGTGGCAGCAAGACA+AGG | + | chr5_1:14648049-14648068 | Msa0719390:CDS | 55.0% | |
| CACCTTGTCTTGCTGCCACT+GGG | - | chr5_1:14648054-14648073 | None:intergenic | 55.0% | |
| TCACCTTGTCTTGCTGCCAC+TGG | - | chr5_1:14648055-14648074 | None:intergenic | 55.0% | |
| TTGAGTAAACCGGGTGAGGC+TGG | + | chr5_1:14648292-14648311 | Msa0719390:intron | 55.0% | |
| TGAGTAAACCGGGTGAGGCT+GGG | + | chr5_1:14648293-14648312 | Msa0719390:intron | 55.0% | |
| GGGGTAACGTGACCTACACT+AGG | - | chr5_1:14648647-14648666 | None:intergenic | 55.0% | |
| CCCTAGAGCTCCTTCTGTTC+AGG | + | chr5_1:14648664-14648683 | Msa0719390:CDS | 55.0% | |
| CAGGACGAACATTGCGCTTG+GGG | - | chr5_1:14649148-14649167 | None:intergenic | 55.0% | |
| CACAGGACGAACATTGCGCT+TGG | - | chr5_1:14649150-14649169 | None:intergenic | 55.0% | |
| CAAGCGCAATGTTCGTCCTG+TGG | + | chr5_1:14649148-14649167 | Msa0719390:CDS | 55.0% | |
| ! | GGAAGAGCAATCTGAGGTGG+AGG | - | chr5_1:14649176-14649195 | None:intergenic | 55.0% |
| GCAGGAAGAGCAATCTGAGG+TGG | - | chr5_1:14649179-14649198 | None:intergenic | 55.0% | |
| ! | CCAGGTGGGAAAGCATATGC+AGG | - | chr5_1:14647989-14648008 | None:intergenic | 55.0% |
| CCTGCATATGCTTTCCCACC+TGG | + | chr5_1:14647986-14648005 | Msa0719390:CDS | 55.0% | |
| GCTTTCCCACCTGGTTGTTC+AGG | + | chr5_1:14649203-14649222 | Msa0719390:CDS | 55.0% | |
| GGAGCAAGGTGACCAACACT+AGG | - | chr5_1:14650101-14650120 | None:intergenic | 55.0% | |
| !! | CAGAAGGAGCTCTAGGAGCA+AGG | - | chr5_1:14650115-14650134 | None:intergenic | 55.0% |
| !! | GGGCCTGGCTTTTGTTTGTG+TGG | - | chr5_1:14650578-14650597 | None:intergenic | 55.0% |
| ACAGGCGGCTGCTGATGATA+AGG | - | chr5_1:14650653-14650672 | None:intergenic | 55.0% | |
| GATGGAGGTCGAGTAACAGG+CGG | - | chr5_1:14650668-14650687 | None:intergenic | 55.0% | |
| ! | CCAGGTGGGAAAGCATATGC+AGG | - | chr5_1:14647989-14648008 | None:intergenic | 55.0% |
| CCTGCATATGCTTTCCCACC+TGG | + | chr5_1:14647986-14648005 | Msa0719390:CDS | 55.0% | |
| GGATAAGGTCCTGAACCAGG+TGG | - | chr5_1:14650719-14650738 | None:intergenic | 55.0% | |
| TCCTAAGCCTGTATCTCCGG+TGG | + | chr5_1:14650751-14650770 | Msa0719390:CDS | 55.0% | |
| AAACCTTGTCCTGCTGCCAC+CGG | - | chr5_1:14650770-14650789 | None:intergenic | 55.0% | |
| TCATCAATGGCACGAGCAGG+TGG | - | chr5_1:14650797-14650816 | None:intergenic | 55.0% | |
| GAGTAAACCGGGTGAGGCTG+GGG | + | chr5_1:14648294-14648313 | Msa0719390:intron | 60.0% | |
| TCTTAGTCCCCAGCCTCACC+CGG | - | chr5_1:14648304-14648323 | None:intergenic | 60.0% | |
| !! | ATCTGAGGTGGAGGTGCCAC+AGG | - | chr5_1:14649167-14649186 | None:intergenic | 60.0% |
| TCCTAAGCCTGTATCCCCGG+TGG | + | chr5_1:14649247-14649266 | Msa0719390:CDS | 60.0% | |
| TCACCTTGTCCTGCTGCCAC+CGG | - | chr5_1:14649266-14649285 | None:intergenic | 60.0% | |
| TTGAGTGAACCGGGTGAGGC+TGG | + | chr5_1:14649561-14649580 | Msa0719390:intron | 60.0% | |
| TGAGTGAACCGGGTGAGGCT+GGG | + | chr5_1:14649562-14649581 | Msa0719390:intron | 60.0% | |
| TCTTAGTCCCCAGCCTCACC+CGG | - | chr5_1:14648304-14648323 | None:intergenic | 60.0% | |
| TTACTGTTGCGCTTGGGGCC+TGG | - | chr5_1:14650593-14650612 | None:intergenic | 60.0% | |
| GCCACCGGAGATACAGGCTT+AGG | - | chr5_1:14650755-14650774 | None:intergenic | 60.0% | |
| CGAACATTGCGCTTGGGGCC+TGG | - | chr5_1:14649143-14649162 | None:intergenic | 65.0% | |
| GCCACCGGGGATACAGGCTT+AGG | - | chr5_1:14649251-14649270 | None:intergenic | 65.0% | |
| ACCTTGTCCTGCTGCCACCG+GGG | - | chr5_1:14649264-14649283 | None:intergenic | 65.0% | |
| CACCTTGTCCTGCTGCCACC+GGG | - | chr5_1:14649265-14649284 | None:intergenic | 65.0% | |
| GAGTGAACCGGGTGAGGCTG+GGG | + | chr5_1:14649563-14649582 | Msa0719390:intron | 65.0% | |
| CCTGCTGCCACCGGAGATAC+AGG | - | chr5_1:14650761-14650780 | None:intergenic | 65.0% | |
| CCTGTATCTCCGGTGGCAGC+AGG | + | chr5_1:14650758-14650777 | Msa0719390:CDS | 65.0% | |
| TCTCCGGTGGCAGCAGGACA+AGG | + | chr5_1:14650764-14650783 | Msa0719390:CDS | 65.0% | |
| CCTGCTGCCACCGGGGATAC+AGG | - | chr5_1:14649257-14649276 | None:intergenic | 70.0% | |
| CCTGTATCCCCGGTGGCAGC+AGG | + | chr5_1:14649254-14649273 | Msa0719390:CDS | 70.0% | |
| TCCCCGGTGGCAGCAGGACA+AGG | + | chr5_1:14649260-14649279 | Msa0719390:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 14647776 | 14650856 | 14647776 | ID=Msa0719390;Name=Msa0719390 |
| chr5_1 | mRNA | 14647776 | 14650856 | 14647776 | ID=Msa0719390-mRNA-1;Parent=Msa0719390;Name=Msa0719390-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0.5|0.2|1|1|1|5|0|504 |
| chr5_1 | exon | 14647776 | 14648070 | 14647776 | ID=Msa0719390-mRNA-1:exon:5682;Parent=Msa0719390-mRNA-1 |
| chr5_1 | exon | 14648435 | 14648685 | 14648435 | ID=Msa0719390-mRNA-1:exon:5683;Parent=Msa0719390-mRNA-1 |
| chr5_1 | exon | 14649077 | 14649281 | 14649077 | ID=Msa0719390-mRNA-1:exon:5684;Parent=Msa0719390-mRNA-1 |
| chr5_1 | exon | 14649706 | 14650139 | 14649706 | ID=Msa0719390-mRNA-1:exon:5685;Parent=Msa0719390-mRNA-1 |
| chr5_1 | exon | 14650527 | 14650856 | 14650527 | ID=Msa0719390-mRNA-1:exon:5686;Parent=Msa0719390-mRNA-1 |
| chr5_1 | CDS | 14647776 | 14648070 | 14647776 | ID=Msa0719390-mRNA-1:cds;Parent=Msa0719390-mRNA-1 |
| chr5_1 | CDS | 14648435 | 14648685 | 14648435 | ID=Msa0719390-mRNA-1:cds;Parent=Msa0719390-mRNA-1 |
| chr5_1 | CDS | 14649077 | 14649281 | 14649077 | ID=Msa0719390-mRNA-1:cds;Parent=Msa0719390-mRNA-1 |
| chr5_1 | CDS | 14649706 | 14650139 | 14649706 | ID=Msa0719390-mRNA-1:cds;Parent=Msa0719390-mRNA-1 |
| chr5_1 | CDS | 14650527 | 14650856 | 14650527 | ID=Msa0719390-mRNA-1:cds;Parent=Msa0719390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
