Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305900 | XP_024639768.1 | 55.764 | 373 | 74 | 9 | 1 | 284 | 1 | 371 | 1.18e-104 | 330 |
| Msa1305900 | XP_024639768.1 | 75.000 | 304 | 47 | 5 | 199 | 499 | 61 | 338 | 9.36e-143 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305900 | A0A396HS21 | 78.599 | 257 | 33 | 3 | 251 | 504 | 22 | 259 | 5.09e-129 | 385 |
| Msa1305900 | A0A396HS21 | 81.395 | 129 | 22 | 2 | 126 | 253 | 112 | 239 | 9.51e-56 | 197 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063040 | Msa1305900 | 0.804467 | 2.130403e-49 | -8.615850e-47 |
| Msa0719080 | Msa1305900 | 0.967664 | 1.369736e-127 | -8.615850e-47 |
| Msa0719090 | Msa1305900 | 0.966863 | 1.712694e-126 | -8.615850e-47 |
| Msa0719390 | Msa1305900 | 0.998567 | 5.451218e-269 | -8.615850e-47 |
| Msa0789640 | Msa1305900 | 0.999516 | 1.625906e-318 | -8.615850e-47 |
| Msa0213670 | Msa1305900 | 0.803969 | 2.704059e-49 | -8.615850e-47 |
| Msa1240320 | Msa1305900 | 0.809993 | 1.437984e-50 | -8.615850e-47 |
| Msa1305900 | Msa1338620 | 0.842552 | 2.411608e-58 | -8.615850e-47 |
| Msa1305900 | Msa1394840 | 0.858701 | 6.875210e-63 | -8.615850e-47 |
| Msa0427350 | Msa1305900 | 0.811435 | 7.011645e-51 | -8.615850e-47 |
| Msa0988690 | Msa1305900 | 0.814164 | 1.770742e-51 | -8.615850e-47 |
| Msa1077610 | Msa1305900 | 0.867789 | 1.055843e-65 | -8.615850e-47 |
| Msa1077620 | Msa1305900 | 0.816750 | 4.707947e-52 | -8.615850e-47 |
| Msa0242320 | Msa1305900 | 0.812912 | 3.339683e-51 | -8.615850e-47 |
| Msa1138460 | Msa1305900 | 0.843669 | 1.215779e-58 | -8.615850e-47 |
| Msa0500520 | Msa1305900 | 0.822015 | 2.969607e-53 | -8.615850e-47 |
| Msa0500530 | Msa1305900 | 0.801558 | 8.507361e-49 | -8.615850e-47 |
| Msa0553900 | Msa1305900 | 0.839834 | 1.249967e-57 | -8.615850e-47 |
| Msa0850750 | Msa1305900 | 0.808123 | 3.615023e-50 | -8.615850e-47 |
| Msa0913860 | Msa1305900 | 0.811858 | 5.673010e-51 | -8.615850e-47 |
| Msa0914840 | Msa1305900 | 0.840134 | 1.044259e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305900 | MtrunA17_Chr5g0409951 | 78.599 | 257 | 33 | 3 | 251 | 504 | 22 | 259 | 9.79e-133 | 385 |
| Msa1305900 | MtrunA17_Chr5g0409951 | 81.395 | 129 | 22 | 2 | 126 | 253 | 112 | 239 | 1.83e-59 | 197 |
| Msa1305900 | MtrunA17_Chr5g0440821 | 77.246 | 167 | 27 | 3 | 339 | 494 | 28 | 194 | 9.82e-72 | 245 |
| Msa1305900 | MtrunA17_Chr5g0440821 | 67.857 | 168 | 25 | 4 | 114 | 253 | 18 | 184 | 7.69e-53 | 192 |
| Msa1305900 | MtrunA17_Chr5g0440821 | 62.162 | 74 | 14 | 3 | 1 | 70 | 1 | 64 | 1.04e-13 | 73.9 |
| Msa1305900 | MtrunA17_Chr5g0440751 | 61.677 | 167 | 27 | 3 | 329 | 495 | 8 | 137 | 1.08e-50 | 171 |
| Msa1305900 | MtrunA17_Chr5g0440751 | 63.704 | 135 | 30 | 4 | 120 | 253 | 10 | 126 | 1.56e-35 | 131 |
| Msa1305900 | MtrunA17_Chr5g0440721 | 54.598 | 174 | 30 | 4 | 322 | 495 | 7 | 131 | 9.14e-42 | 147 |
| Msa1305900 | MtrunA17_Chr5g0440721 | 54.167 | 144 | 34 | 4 | 111 | 253 | 8 | 120 | 3.32e-29 | 112 |
| Msa1305900 | MtrunA17_Chr5g0440721 | 43.571 | 140 | 30 | 6 | 1 | 104 | 1 | 127 | 2.04e-14 | 71.2 |
| Msa1305900 | MtrunA17_Chr5g0409941 | 75.238 | 105 | 19 | 3 | 1 | 98 | 1 | 105 | 1.58e-39 | 139 |
| Msa1305900 | MtrunA17_Chr5g0409941 | 85.714 | 42 | 5 | 1 | 331 | 372 | 34 | 74 | 3.67e-16 | 74.3 |
| Msa1305900 | MtrunA17_Chr5g0409941 | 84.848 | 33 | 5 | 0 | 450 | 482 | 74 | 106 | 3.18e-11 | 60.5 |
| Msa1305900 | MtrunA17_Chr5g0440731 | 50.000 | 100 | 41 | 2 | 249 | 340 | 13 | 111 | 2.90e-16 | 79.3 |
| Msa1305900 | MtrunA17_Chr5g0440741 | 49.000 | 100 | 37 | 3 | 249 | 340 | 13 | 106 | 5.02e-15 | 75.5 |
| Msa1305900 | MtrunA17_Chr5g0409841 | 40.336 | 119 | 51 | 4 | 257 | 359 | 4 | 118 | 3.41e-14 | 72.0 |
| Msa1305900 | MtrunA17_Chr5g0409831 | 45.977 | 87 | 43 | 3 | 257 | 343 | 4 | 86 | 1.88e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 147 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACATGATTCTTAGGTTT+TGG | 0.214289 | 8_4:+237728 | None:intergenic |
| TCAACATGATTCTTAGGTTT+TGG | 0.216772 | 8_4:+235634 | None:intergenic |
| GAAACTTTCTCAACATTCTT+AGG | 0.220690 | 8_4:+237088 | None:intergenic |
| TTCTCAACATTCTTAGGTTT+TGG | 0.226512 | 8_4:+237094 | None:intergenic |
| TCATTATCAACATGATTCTT+AGG | 0.228118 | 8_4:+235628 | None:intergenic |
| CCCTAGAGCTCCTTCTGTTC+AGG | 0.266787 | 8_4:-237014 | Msa1305900:intron |
| ACATTCTCAACATGATTCTT+AGG | 0.266972 | 8_4:+237722 | None:intergenic |
| GCTTTCCCACCTGGTTGTTC+AGG | 0.273808 | 8_4:-236475 | Msa1305900:CDS |
| CAAAGAGAGAGAATAGAAAA+AGG | 0.274706 | 8_4:-235747 | Msa1305900:CDS |
| TCCTAGAGCTCCTTCTGTTC+AGG | 0.288148 | 8_4:-235560 | Msa1305900:intron |
| AAACAGAAGTTAAACTGTTC+TGG | 0.303211 | 8_4:-235157 | Msa1305900:intron |
| GACGTTCCTGTGTTGGTTGC+TGG | 0.314360 | 8_4:-237788 | Msa1305900:CDS |
| TCACCTTGTCTTGCTGCCAC+TGG | 0.327183 | 8_4:+237626 | None:intergenic |
| TATGCTTTCCCACCTGGTTC+AGG | 0.329227 | 8_4:-234971 | Msa1305900:CDS |
| TATGCTTTCCCACCTGGTTC+AGG | 0.329227 | 8_4:-237686 | Msa1305900:CDS |
| TTTATTTAAATTAGTCTTAC+GGG | 0.332638 | 8_4:+235936 | None:intergenic |
| CAACAGAAGTCAAACGGTTC+TGG | 0.334816 | 8_4:-236607 | Msa1305900:intron |
| CCTGCTGCCACCGGGGATAC+AGG | 0.343744 | 8_4:+236424 | None:intergenic |
| GTAAGACTAATTTAAATAAA+CGG | 0.344589 | 8_4:-235933 | Msa1305900:CDS |
| TTGAAGAGAGGGCCAAGTTT+TGG | 0.345165 | 8_4:-237851 | Msa1305900:CDS |
| GCTCATTTAAATCAATTTGA+TGG | 0.348445 | 8_4:+237239 | None:intergenic |
| CCTGCATATGCTTTCCCACC+TGG | 0.358776 | 8_4:-234977 | Msa1305900:CDS |
| CCTGCATATGCTTTCCCACC+TGG | 0.358776 | 8_4:-236484 | Msa1305900:CDS |
| CACCTTGTCCTGCTGCCACC+GGG | 0.363220 | 8_4:+236416 | None:intergenic |
| GATGTTCCTGTGTTGGTTGT+TGG | 0.372353 | 8_4:-237154 | Msa1305900:CDS |
| CCTGCATATGCTTTCCCACC+TGG | 0.375591 | 8_4:-237692 | Msa1305900:CDS |
| CACCTTGTCTTGCTGCCACT+GGG | 0.379729 | 8_4:+237627 | None:intergenic |
| CTTGCTGCCACTGGGAATAC+AGG | 0.380506 | 8_4:+237635 | None:intergenic |
| TGGAAAATGTTTGTCATCAA+TGG | 0.380623 | 8_4:+234871 | None:intergenic |
| TAAGACTAATTTAAATAAAC+GGG | 0.381254 | 8_4:-235932 | Msa1305900:CDS |
| TGCTATGCTCAGAGGGATCT+TGG | 0.382368 | 8_4:+235902 | None:intergenic |
| CGAACATTGCGCTTGGGGCC+TGG | 0.387615 | 8_4:+236538 | None:intergenic |
| TGAGATGGAGGTCGAGTAAC+AGG | 0.387968 | 8_4:+235010 | None:intergenic |
| TTACTGTTGCGCTTGGGGCC+TGG | 0.395341 | 8_4:+235088 | None:intergenic |
| AATTATGGTGATTGCTGATA+AGG | 0.402409 | 8_4:-237906 | None:intergenic |
| GGATTCTCACCATTCGGATA+AGG | 0.417277 | 8_4:+234947 | None:intergenic |
| TTTGTGTTACTGTTGCGCTT+GGG | 0.420054 | 8_4:+235082 | None:intergenic |
| GTTTATTTAAATTAGTCTTA+CGG | 0.420223 | 8_4:+235935 | None:intergenic |
| TGACACCGATATAATTAAGT+TGG | 0.420892 | 8_4:-235854 | Msa1305900:CDS |
| ACGATCCAACTTAATTATAT+CGG | 0.421412 | 8_4:+235849 | None:intergenic |
| TCACCTTGTCCTGCTGCCAC+CGG | 0.427981 | 8_4:+236415 | None:intergenic |
| CCTGCTGCCACCGGAGATAC+AGG | 0.429981 | 8_4:+234920 | None:intergenic |
| TTTGGGGCATGACTTTCTCC+TGG | 0.432296 | 8_4:+235766 | None:intergenic |
| ATTTGTGTTACTGTTGCGCT+TGG | 0.435565 | 8_4:+235081 | None:intergenic |
| GGATTAGTACCATTCGGATA+AGG | 0.436901 | 8_4:+236451 | None:intergenic |
| GGCTTAGGATTCTCACCATT+CGG | 0.437848 | 8_4:+234941 | None:intergenic |
| ACAGGACGAACATTGCGCTT+GGG | 0.437958 | 8_4:+236532 | None:intergenic |
| ATAGGATCTTGGACTGAAAC+CGG | 0.448717 | 8_4:+237217 | None:intergenic |
| GGCTTAGGATTAGTACCATT+CGG | 0.449867 | 8_4:+236445 | None:intergenic |
| GATGTTCCTGTGTTGGTTGT+CGG | 0.459995 | 8_4:-235694 | Msa1305900:CDS |
| CCTGTATCCCCGGTGGCAGC+AGG | 0.463627 | 8_4:-236424 | Msa1305900:CDS |
| CACAGGACGAACATTGCGCT+TGG | 0.470103 | 8_4:+236531 | None:intergenic |
| CGGTGTCAAATTTCTCGTGT+TGG | 0.471082 | 8_4:+235869 | None:intergenic |
| GAATCCTAAGCCTGTATCTC+CGG | 0.475680 | 8_4:-234930 | Msa1305900:CDS |
| CCTGTATCTCCGGTGGCAGC+AGG | 0.482035 | 8_4:-234920 | Msa1305900:CDS |
| ATCTGAGGTGGAGGTGCCAC+AGG | 0.482175 | 8_4:+236514 | None:intergenic |
| GCTGTTTCTGTGCCTAGTGT+TGG | 0.486767 | 8_4:-235592 | Msa1305900:CDS |
| TCAAATTGATTTAAATGAGC+CGG | 0.491679 | 8_4:-237236 | Msa1305900:CDS |
| TAAGAATCATGTTGATAATG+AGG | 0.491746 | 8_4:-235626 | Msa1305900:CDS |
| ACAGGCGGCTGCTGATGATA+AGG | 0.497930 | 8_4:+235028 | None:intergenic |
| ACCTGAACAGAAGGAGCTCT+AGG | 0.498160 | 8_4:+237013 | None:intergenic |
| TCACCACACAAACAAAAGCC+AGG | 0.499595 | 8_4:-235106 | Msa1305900:CDS |
| GGATTCTCACCATTCAGATA+AGG | 0.502739 | 8_4:+237662 | None:intergenic |
| ATTCAAGCTGAGTCAGTACC+AGG | 0.506755 | 8_4:-235784 | Msa1305900:CDS |
| GTTTGAGCATCAGAAAGAAC+TGG | 0.508546 | 8_4:+237752 | None:intergenic |
| AAGCGCAACAGTAACACAAA+TGG | 0.509649 | 8_4:-235079 | Msa1305900:CDS |
| CCTGAACAGAAGGAGCTCTA+GGG | 0.512468 | 8_4:+237014 | None:intergenic |
| TCCCCGGTGGCAGCAGGACA+AGG | 0.513079 | 8_4:-236418 | Msa1305900:intron |
| GTTGAGAAAGTTTCTGCTAA+GGG | 0.514785 | 8_4:-237079 | Msa1305900:CDS |
| TTGTGTTACTGTTGCGCTTG+GGG | 0.516114 | 8_4:+235083 | None:intergenic |
| TAGAAAGCACGGAACGAAGA+AGG | 0.519265 | 8_4:-235975 | Msa1305900:CDS |
| TCCGTGGAGACATAGGATCT+TGG | 0.520218 | 8_4:+237206 | None:intergenic |
| GCCACTGGGAATACAGGCTT+AGG | 0.525101 | 8_4:+237641 | None:intergenic |
| TTCAGATAAGGTCCTGAACC+AGG | 0.526807 | 8_4:+237674 | None:intergenic |
| AGAAAGAGCTGGCCAAGACT+TGG | 0.528166 | 8_4:+237129 | None:intergenic |
| CTTAAATCAATATTGAAGAG+AGG | 0.529776 | 8_4:-237863 | Msa1305900:CDS |
| TGTTGAGAAAGTTTCTGCTA+AGG | 0.531640 | 8_4:-237080 | Msa1305900:CDS |
| CAGGACGAACATTGCGCTTG+GGG | 0.533224 | 8_4:+236533 | None:intergenic |
| AGAAAGAGCTGGCCAAGACT+TGG | 0.534366 | 8_4:+235669 | None:intergenic |
| GGTGATGTCATCTTATTCAT+CGG | 0.534902 | 8_4:+235124 | None:intergenic |
| TAATCCTAAGCCTGTATCCC+CGG | 0.538156 | 8_4:-236434 | Msa1305900:CDS |
| GCCACCGGGGATACAGGCTT+AGG | 0.538751 | 8_4:+236430 | None:intergenic |
| GCAGTTTCTGTGCCTAGTGT+AGG | 0.538987 | 8_4:-237046 | Msa1305900:CDS |
| TGTCTGTTCCGTGGAGACAT+AGG | 0.543654 | 8_4:+237199 | None:intergenic |
| GCCACCGGAGATACAGGCTT+AGG | 0.545376 | 8_4:+234926 | None:intergenic |
| TCATCACGCTATCAAAAGCC+AGG | 0.546703 | 8_4:-236556 | Msa1305900:CDS |
| TTGTCATCAATGGCACGAGC+AGG | 0.548498 | 8_4:+234881 | None:intergenic |
| AACAAACGAACCTGAACAGA+AGG | 0.548968 | 8_4:+235550 | None:intergenic |
| TGGTTGTCGGTACCAAGTCT+TGG | 0.550500 | 8_4:-235681 | Msa1305900:CDS |
| TTAAATCAATATTGAAGAGA+GGG | 0.551911 | 8_4:-237862 | Msa1305900:CDS |
| GTGATTCAACAGAAGTCAAA+CGG | 0.553306 | 8_4:-236613 | Msa1305900:intron |
| TGGTTGTTGGAACCAAGTCT+TGG | 0.553347 | 8_4:-237141 | Msa1305900:CDS |
| GGTTCAGGACCTTATCTGAA+TGG | 0.559427 | 8_4:-237671 | Msa1305900:CDS |
| AAACCTTGTCCTGCTGCCAC+CGG | 0.561642 | 8_4:+234911 | None:intergenic |
| TTCGGATAAGGTCCTGAACC+AGG | 0.561660 | 8_4:+234959 | None:intergenic |
| TCTCCGGTGGCAGCAGGACA+AGG | 0.563672 | 8_4:-234914 | Msa1305900:CDS |
| TGTTCCATGCTATGCTCAGA+GGG | 0.566140 | 8_4:+235895 | None:intergenic |
| GGAAGAGCAATCTGAGGTGG+AGG | 0.569429 | 8_4:+236505 | None:intergenic |
| AACAAACTAACCTGAACAGA+AGG | 0.569589 | 8_4:+237004 | None:intergenic |
| TTCCCAGTGGCAGCAAGACA+AGG | 0.570857 | 8_4:-237629 | Msa1305900:intron |
| TGGTTGCTGGAACTAAGTCT+TGG | 0.574249 | 8_4:-237775 | Msa1305900:CDS |
| ACCTGAACAGAAGGAGCTCT+AGG | 0.574556 | 8_4:+235559 | None:intergenic |
| CAAGCGCAATGTTCGTCCTG+TGG | 0.574699 | 8_4:-236530 | Msa1305900:CDS |
| CATTTAAATCAATTTGATGG+AGG | 0.575538 | 8_4:+237242 | None:intergenic |
| TCATCAATGGCACGAGCAGG+TGG | 0.575928 | 8_4:+234884 | None:intergenic |
| AAGAATCATGTTGATAATGA+GGG | 0.578626 | 8_4:-235625 | Msa1305900:CDS |
| AAGTGTTGATGTTCCTGTGT+TGG | 0.580284 | 8_4:-235701 | Msa1305900:CDS |
| AAGTGTTGATGTTCCTGTGT+TGG | 0.580284 | 8_4:-237161 | Msa1305900:CDS |
| AAATGATGACGTTCCTGTGT+TGG | 0.580522 | 8_4:-237795 | Msa1305900:CDS |
| CCAGGTGGGAAAGCATATGC+AGG | 0.582086 | 8_4:+237692 | None:intergenic |
| CAGAAGGAGCTCTAGGAGCA+AGG | 0.582504 | 8_4:+235566 | None:intergenic |
| TTGTTCCATGCTATGCTCAG+AGG | 0.583511 | 8_4:+235894 | None:intergenic |
| CCAGGTGGGAAAGCATATGC+AGG | 0.588904 | 8_4:+234977 | None:intergenic |
| CCAGGTGGGAAAGCATATGC+AGG | 0.591343 | 8_4:+236484 | None:intergenic |
| GTTTGAACATCAGAAAGAGC+TGG | 0.591524 | 8_4:+235658 | None:intergenic |
| GTTTGAGCATCAGAAAGAGC+TGG | 0.591524 | 8_4:+237118 | None:intergenic |
| GCAGGAACAGCAATGTGAGA+TGG | 0.592310 | 8_4:+234995 | None:intergenic |
| AGATCCCTCTGAGCATAGCA+TGG | 0.596307 | 8_4:-235899 | Msa1305900:CDS |
| GGAGCAAGGTGACCAACACT+AGG | 0.606495 | 8_4:+235580 | None:intergenic |
| CTGAACAGAAGGAGCTCTAG+GGG | 0.611281 | 8_4:+237015 | None:intergenic |
| TCCAAGATCCTATGTCTCCA+CGG | 0.613629 | 8_4:-237207 | Msa1305900:CDS |
| TGTTCAGGACCTTATCCGAA+TGG | 0.616249 | 8_4:-236460 | Msa1305900:CDS |
| GCAGGAAGAGCAATCTGAGG+TGG | 0.628210 | 8_4:+236502 | None:intergenic |
| GGGGTAACGTGACCTACACT+AGG | 0.628823 | 8_4:+237034 | None:intergenic |
| GATTGCTGATAAGGACAAGA+GGG | 0.630743 | 8_4:-237897 | Msa1305900:CDS |
| GGAACAGCAATGTGAGATGG+AGG | 0.639975 | 8_4:+234998 | None:intergenic |
| TCCTAAGCCTGTATCTCCGG+TGG | 0.640309 | 8_4:-234927 | Msa1305900:CDS |
| GGTTCAGGACCTTATCCGAA+TGG | 0.640623 | 8_4:-234956 | Msa1305900:CDS |
| AAGCACGGAACGAAGAAGGA+AGG | 0.644921 | 8_4:-235971 | Msa1305900:CDS |
| TTAGTTCCAGCAACCAACAC+AGG | 0.650533 | 8_4:+237782 | None:intergenic |
| TGATTGCTGATAAGGACAAG+AGG | 0.652218 | 8_4:-237898 | Msa1305900:CDS |
| TTGGTACCGACAACCAACAC+AGG | 0.652825 | 8_4:+235688 | None:intergenic |
| GATAAGGTCCTGAACCAGGT+GGG | 0.657071 | 8_4:+234963 | None:intergenic |
| GATAAGGTCCTGAACCAGGT+GGG | 0.657071 | 8_4:+237678 | None:intergenic |
| GGATAAGGTCCTGAACAACC+AGG | 0.662311 | 8_4:+236466 | None:intergenic |
| TTGGTTCCAACAACCAACAC+AGG | 0.665985 | 8_4:+237148 | None:intergenic |
| CCAACACTATGTCTGTTCCG+TGG | 0.667873 | 8_4:+237190 | None:intergenic |
| CCACGGAACAGACATAGTGT+TGG | 0.674520 | 8_4:-237190 | Msa1305900:CDS |
| AAGGTCCTGAACAACCAGGT+GGG | 0.679074 | 8_4:+236470 | None:intergenic |
| ACCTTGTCCTGCTGCCACCG+GGG | 0.684672 | 8_4:+236417 | None:intergenic |
| AGATAAGGTCCTGAACCAGG+TGG | 0.691288 | 8_4:+237677 | None:intergenic |
| TCCTAAGCCTGTATTCCCAG+TGG | 0.691555 | 8_4:-237642 | Msa1305900:CDS |
| TCCTAAGCCTGTATCCCCGG+TGG | 0.692551 | 8_4:-236431 | Msa1305900:CDS |
| GGATAAGGTCCTGAACCAGG+TGG | 0.699303 | 8_4:+234962 | None:intergenic |
| TAAGGTCCTGAACAACCAGG+TGG | 0.716289 | 8_4:+236469 | None:intergenic |
| TATGCAGGAAGAGCAATCTG+AGG | 0.717586 | 8_4:+236499 | None:intergenic |
| GATGGAGGTCGAGTAACAGG+CGG | 0.719570 | 8_4:+235013 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTTAACTTACATAAT+TGG | - | chr8_4:235289-235308 | Msa1305900:intron | 15.0% |
| !!! | AATTCTTATAGTTGTTTTTT+TGG | - | chr8_4:235469-235488 | Msa1305900:intron | 15.0% |
| !!! | ATTTTGTTAACTTACATAAT+TGG | - | chr8_4:235289-235308 | Msa1305900:intron | 15.0% |
| !!! | TTTATTTAAATTAGTCTTAC+GGG | + | chr8_4:236813-236832 | None:intergenic | 15.0% |
| !!! | GTTTATTTAAATTAGTCTTA+CGG | + | chr8_4:236814-236833 | None:intergenic | 15.0% |
| !! | GTAAGACTAATTTAAATAAA+CGG | - | chr8_4:236813-236832 | Msa1305900:intron | 15.0% |
| !! | TAAGACTAATTTAAATAAAC+GGG | - | chr8_4:236814-236833 | Msa1305900:intron | 15.0% |
| !!! | TCATATTTTTTTTTCTTCAT+TGG | - | chr8_4:237477-237496 | Msa1305900:intron | 15.0% |
| !! | TTAAATCAATATTGAAGAGA+GGG | - | chr8_4:234884-234903 | Msa1305900:CDS | 20.0% |
| !!! | AAGTTTTGGTAAGAAAAAAA+GGG | - | chr8_4:234909-234928 | Msa1305900:CDS | 20.0% |
| !! | ATTATGATATCTTCTCATTA+TGG | - | chr8_4:235234-235253 | Msa1305900:intron | 20.0% |
| !! | TGTAAGTTAACAAAATTACT+TGG | + | chr8_4:235285-235304 | None:intergenic | 20.0% |
| !! | AAGAATTAAGAAGATTTAAC+TGG | - | chr8_4:235388-235407 | Msa1305900:intron | 20.0% |
| !!! | CATGCATAATATTTTTTGAA+TGG | + | chr8_4:235431-235450 | None:intergenic | 20.0% |
| !! | TGTAAGTTAACAAAATTACT+TGG | + | chr8_4:235285-235304 | None:intergenic | 20.0% |
| !!! | ATTTTTTTAACTCGCATAAT+TGG | - | chr8_4:236558-236577 | Msa1305900:CDS | 20.0% |
| !! | AAGAATTAAGAAGATTTAAC+TGG | - | chr8_4:235388-235407 | Msa1305900:intron | 20.0% |
| !!! | CATGCATAATATTTTTTGAA+TGG | + | chr8_4:235431-235450 | None:intergenic | 20.0% |
| !!! | GTTTTTTTATATAGAAAGCA+CGG | - | chr8_4:236760-236779 | Msa1305900:intron | 20.0% |
| ! | CTTAAATCAATATTGAAGAG+AGG | - | chr8_4:234883-234902 | Msa1305900:CDS | 25.0% |
| !!! | CTTTTTTTCTTACCAAAACT+TGG | + | chr8_4:234910-234929 | None:intergenic | 25.0% |
| !!! | CAAGTTTTGGTAAGAAAAAA+AGG | - | chr8_4:234908-234927 | Msa1305900:CDS | 25.0% |
| ! | TAAGAAAAAAAGGGTTCTTT+GGG | - | chr8_4:234918-234937 | Msa1305900:CDS | 25.0% |
| ! | CATTTAAATCAATTTGATGG+AGG | + | chr8_4:235507-235526 | None:intergenic | 25.0% |
| ! | GCTCATTTAAATCAATTTGA+TGG | + | chr8_4:235510-235529 | None:intergenic | 25.0% |
| !! | TCAAATTGATTTAAATGAGC+CGG | - | chr8_4:235510-235529 | Msa1305900:intron | 25.0% |
| ! | TTCTTATGCTTGCAATAATA+TGG | + | chr8_4:235908-235927 | None:intergenic | 25.0% |
| ! | TAGAGTCGACAAATTTATTT+AGG | - | chr8_4:235997-236016 | Msa1305900:intron | 25.0% |
| !! | TTTTACATTATTGCTAACTC+TGG | - | chr8_4:236064-236083 | Msa1305900:intron | 25.0% |
| ! | TTTACATTATTGCTAACTCT+GGG | - | chr8_4:236065-236084 | Msa1305900:intron | 25.0% |
| ! | TCATTATGATATCTTCTTTG+TGG | - | chr8_4:236443-236462 | Msa1305900:CDS | 25.0% |
| !! | TGTCGATATAATTCGAATTT+TGG | - | chr8_4:236718-236737 | Msa1305900:intron | 25.0% |
| ! | TGGTTTCAAATTCATATAGT+TGG | - | chr8_4:236738-236757 | Msa1305900:intron | 25.0% |
| ! | ACGATCCAACTTAATTATAT+CGG | + | chr8_4:236900-236919 | None:intergenic | 25.0% |
| !! | TTTTTCTATTCTCTCTCTTT+GGG | + | chr8_4:237000-237019 | None:intergenic | 25.0% |
| ! | AAAGAGAGAGAATAGAAAAA+GGG | - | chr8_4:237000-237019 | Msa1305900:intron | 25.0% |
| ! | TCATTATCAACATGATTCTT+AGG | + | chr8_4:237121-237140 | None:intergenic | 25.0% |
| !!! | TAAGAATCATGTTGATAATG+AGG | - | chr8_4:237120-237139 | Msa1305900:CDS | 25.0% |
| !!! | AAGAATCATGTTGATAATGA+GGG | - | chr8_4:237121-237140 | Msa1305900:CDS | 25.0% |
| !! | TTAGTGTAATGTGATTTTGA+TGG | - | chr8_4:237273-237292 | Msa1305900:intron | 25.0% |
| ! | TTCTTATGCTTGCAATAATA+TGG | + | chr8_4:235908-235927 | None:intergenic | 25.0% |
| ! | AGTCAACCAGTAAAAAATAT+TGG | - | chr8_4:237432-237451 | Msa1305900:intron | 25.0% |
| ! | TTCTACAATATTGTTAACTC+TGG | - | chr8_4:237514-237533 | Msa1305900:intron | 25.0% |
| ! | TCTACAATATTGTTAACTCT+GGG | - | chr8_4:237515-237534 | Msa1305900:intron | 25.0% |
| GTAAGAAAAAAAGGGTTCTT+TGG | - | chr8_4:234917-234936 | Msa1305900:CDS | 30.0% | |
| ! | TCAACATGATTCTTAGGTTT+TGG | + | chr8_4:235021-235040 | None:intergenic | 30.0% |
| ACATTCTCAACATGATTCTT+AGG | + | chr8_4:235027-235046 | None:intergenic | 30.0% | |
| GCAACTAAAAGTCATTTCAA+TGG | + | chr8_4:235179-235198 | None:intergenic | 30.0% | |
| ! | TCTCATTATGGTTCTGTAAT+TGG | - | chr8_4:235246-235265 | Msa1305900:intron | 30.0% |
| !! | CTGTAATTGGTTTGAGTAAT+TGG | - | chr8_4:235259-235278 | Msa1305900:intron | 30.0% |
| ! | AGGCATAGTTGATTTCATTA+AGG | - | chr8_4:235328-235347 | Msa1305900:intron | 30.0% |
| ! | TTCTCAACATTCTTAGGTTT+TGG | + | chr8_4:235655-235674 | None:intergenic | 30.0% |
| GAAACTTTCTCAACATTCTT+AGG | + | chr8_4:235661-235680 | None:intergenic | 30.0% | |
| !!! | GTTTTTTATCTTTCCTTCGA+TGG | - | chr8_4:236027-236046 | Msa1305900:intron | 30.0% |
| !! | ACAACTTTTATTTCCATCGA+AGG | + | chr8_4:236043-236062 | None:intergenic | 30.0% |
| !! | CTGTAATTGGTTTGAGTAAT+TGG | - | chr8_4:235259-235278 | Msa1305900:intron | 30.0% |
| ! | AGGCATAGTTGATTTCATTA+AGG | - | chr8_4:235328-235347 | Msa1305900:intron | 30.0% |
| TGACACCGATATAATTAAGT+TGG | - | chr8_4:236892-236911 | Msa1305900:intron | 30.0% | |
| ! | TTTTCTATTCTCTCTCTTTG+GGG | + | chr8_4:236999-237018 | None:intergenic | 30.0% |
| ! | CTTTTTCTATTCTCTCTCTT+TGG | + | chr8_4:237001-237020 | None:intergenic | 30.0% |
| CAAAGAGAGAGAATAGAAAA+AGG | - | chr8_4:236999-237018 | Msa1305900:intron | 30.0% | |
| ! | TCAACATGATTCTTAGGTTT+TGG | + | chr8_4:235021-235040 | None:intergenic | 30.0% |
| !!! | GACTCTCCAATATTTTTTAC+TGG | + | chr8_4:237441-237460 | None:intergenic | 30.0% |
| AAACAGAAGTTAAACTGTTC+TGG | - | chr8_4:237589-237608 | Msa1305900:intron | 30.0% | |
| TGGAAAATGTTTGTCATCAA+TGG | + | chr8_4:237878-237897 | None:intergenic | 30.0% | |
| !!! | GCATCGTTTTTTGAGTAAAC+CGG | - | chr8_4:235350-235369 | Msa1305900:intron | 35.0% |
| !!! | CATCGTTTTTTGAGTAAACC+GGG | - | chr8_4:235351-235370 | Msa1305900:intron | 35.0% |
| TGTTGAGAAAGTTTCTGCTA+AGG | - | chr8_4:235666-235685 | Msa1305900:CDS | 35.0% | |
| GTTGAGAAAGTTTCTGCTAA+GGG | - | chr8_4:235667-235686 | Msa1305900:CDS | 35.0% | |
| AACAAACTAACCTGAACAGA+AGG | + | chr8_4:235745-235764 | None:intergenic | 35.0% | |
| ! | TTTGCCTGATTTTCTGTGTA+TGG | - | chr8_4:236106-236125 | Msa1305900:intron | 35.0% |
| AGATCCATACACAGAAAATC+AGG | + | chr8_4:236113-236132 | None:intergenic | 35.0% | |
| GTGATTCAACAGAAGTCAAA+CGG | - | chr8_4:236133-236152 | Msa1305900:intron | 35.0% | |
| TTGCTTTGATACCATTGAAG+TGG | - | chr8_4:236376-236395 | Msa1305900:intron | 35.0% | |
| ! | CTTCTTTGTGGTTCTGTAAT+TGG | - | chr8_4:236455-236474 | Msa1305900:CDS | 35.0% |
| ! | TTGGCTAGTTCATCTGATTA+AGG | - | chr8_4:236517-236536 | Msa1305900:CDS | 35.0% |
| TAGTTCATCTGATTAAGGCT+TGG | - | chr8_4:236522-236541 | Msa1305900:CDS | 35.0% | |
| ! | TTGGCTAGTTGATCTGATTA+AGG | - | chr8_4:236577-236596 | Msa1305900:CDS | 35.0% |
| ! | AGAATAGAAAAAGGGTGCAT+TGG | - | chr8_4:237008-237027 | Msa1305900:intron | 35.0% |
| ! | GAATAGAAAAAGGGTGCATT+GGG | - | chr8_4:237009-237028 | Msa1305900:intron | 35.0% |
| GAGAGTCGACAAATTTATGT+AGG | - | chr8_4:237454-237473 | Msa1305900:intron | 35.0% | |
| ! | TTTGCCTGATTTTCTGTGTA+TGG | - | chr8_4:236106-236125 | Msa1305900:intron | 35.0% |
| AGATCCATACACAGAAAATC+AGG | + | chr8_4:236113-236132 | None:intergenic | 35.0% | |
| GGTGATGTCATCTTATTCAT+CGG | + | chr8_4:237625-237644 | None:intergenic | 35.0% | |
| TGATTGCTGATAAGGACAAG+AGG | - | chr8_4:234848-234867 | Msa1305900:CDS | 40.0% | |
| GATTGCTGATAAGGACAAGA+GGG | - | chr8_4:234849-234868 | Msa1305900:CDS | 40.0% | |
| ! | AAATGATGACGTTCCTGTGT+TGG | - | chr8_4:234951-234970 | Msa1305900:CDS | 40.0% |
| GTTTGAGCATCAGAAAGAAC+TGG | + | chr8_4:234997-235016 | None:intergenic | 40.0% | |
| GGATTCTCACCATTCAGATA+AGG | + | chr8_4:235087-235106 | None:intergenic | 40.0% | |
| ! | TTGGCTAGCTCATCTGATTA+AGG | - | chr8_4:235308-235327 | Msa1305900:intron | 40.0% |
| !!! | TTTTTTGAGTAAACCGGGTG+AGG | - | chr8_4:235356-235375 | Msa1305900:intron | 40.0% |
| ATAGGATCTTGGACTGAAAC+CGG | + | chr8_4:235532-235551 | None:intergenic | 40.0% | |
| !! | AAGTGTTGATGTTCCTGTGT+TGG | - | chr8_4:235585-235604 | Msa1305900:CDS | 40.0% |
| ! | GGATTAGTACCATTCGGATA+AGG | + | chr8_4:236298-236317 | None:intergenic | 40.0% |
| ! | GGCTTAGGATTAGTACCATT+CGG | + | chr8_4:236304-236323 | None:intergenic | 40.0% |
| GCAACTAAAAGCCACTTCAA+TGG | + | chr8_4:236390-236409 | None:intergenic | 40.0% | |
| !!! | GCATCGTTTTTTGAGTGAAC+CGG | - | chr8_4:236619-236638 | Msa1305900:intron | 40.0% |
| !!! | CATCGTTTTTTGAGTGAACC+GGG | - | chr8_4:236620-236639 | Msa1305900:intron | 40.0% |
| !! | AAGTGTTGATGTTCCTGTGT+TGG | - | chr8_4:235585-235604 | Msa1305900:CDS | 40.0% |
| GTTTGAACATCAGAAAGAGC+TGG | + | chr8_4:237091-237110 | None:intergenic | 40.0% | |
| AACAAACGAACCTGAACAGA+AGG | + | chr8_4:237199-237218 | None:intergenic | 40.0% | |
| ! | TTTGTGTTACTGTTGCGCTT+GGG | + | chr8_4:237667-237686 | None:intergenic | 40.0% |
| ! | ATTTGTGTTACTGTTGCGCT+TGG | + | chr8_4:237668-237687 | None:intergenic | 40.0% |
| AAGCGCAACAGTAACACAAA+TGG | - | chr8_4:237667-237686 | Msa1305900:CDS | 40.0% | |
| ! | AAACATTTTCCAAGCTTCCC+AGG | - | chr8_4:237886-237905 | Msa1305900:CDS | 40.0% |
| ! | GAAATTTTACCTGGGAAGCT+TGG | + | chr8_4:237898-237917 | None:intergenic | 40.0% |
| ! | TTGAAGAGAGGGCCAAGTTT+TGG | - | chr8_4:234895-234914 | Msa1305900:CDS | 45.0% |
| TTAGTTCCAGCAACCAACAC+AGG | + | chr8_4:234967-234986 | None:intergenic | 45.0% | |
| TGGTTGCTGGAACTAAGTCT+TGG | - | chr8_4:234971-234990 | Msa1305900:CDS | 45.0% | |
| TTCAGATAAGGTCCTGAACC+AGG | + | chr8_4:235075-235094 | None:intergenic | 45.0% | |
| GGTTCAGGACCTTATCTGAA+TGG | - | chr8_4:235075-235094 | Msa1305900:CDS | 45.0% | |
| TCCAAGATCCTATGTCTCCA+CGG | - | chr8_4:235539-235558 | Msa1305900:intron | 45.0% | |
| !! | GATGTTCCTGTGTTGGTTGT+TGG | - | chr8_4:235592-235611 | Msa1305900:CDS | 45.0% |
| TTGGTTCCAACAACCAACAC+AGG | + | chr8_4:235601-235620 | None:intergenic | 45.0% | |
| TGGTTGTTGGAACCAAGTCT+TGG | - | chr8_4:235605-235624 | Msa1305900:CDS | 45.0% | |
| GTTTGAGCATCAGAAAGAGC+TGG | + | chr8_4:235631-235650 | None:intergenic | 45.0% | |
| CAACAGAAGTCAAACGGTTC+TGG | - | chr8_4:236139-236158 | Msa1305900:intron | 45.0% | |
| !!! | GGCTTTTGATAGCGTGATGA+TGG | + | chr8_4:236190-236209 | None:intergenic | 45.0% |
| TCATCACGCTATCAAAAGCC+AGG | - | chr8_4:236190-236209 | Msa1305900:intron | 45.0% | |
| TATGCAGGAAGAGCAATCTG+AGG | + | chr8_4:236250-236269 | None:intergenic | 45.0% | |
| TGTTCAGGACCTTATCCGAA+TGG | - | chr8_4:236286-236305 | Msa1305900:intron | 45.0% | |
| TAATCCTAAGCCTGTATCCC+CGG | - | chr8_4:236312-236331 | Msa1305900:intron | 45.0% | |
| !!! | TTTTTTGAGTGAACCGGGTG+AGG | - | chr8_4:236625-236644 | Msa1305900:intron | 45.0% |
| ! | TAGAAAGCACGGAACGAAGA+AGG | - | chr8_4:236771-236790 | Msa1305900:intron | 45.0% |
| TGTTCCATGCTATGCTCAGA+GGG | + | chr8_4:236854-236873 | None:intergenic | 45.0% | |
| TTGTTCCATGCTATGCTCAG+AGG | + | chr8_4:236855-236874 | None:intergenic | 45.0% | |
| ! | CGGTGTCAAATTTCTCGTGT+TGG | + | chr8_4:236880-236899 | None:intergenic | 45.0% |
| ATTCAAGCTGAGTCAGTACC+AGG | - | chr8_4:236962-236981 | Msa1305900:intron | 45.0% | |
| !! | GATGTTCCTGTGTTGGTTGT+CGG | - | chr8_4:235592-235611 | Msa1305900:CDS | 45.0% |
| TCACCACACAAACAAAAGCC+AGG | - | chr8_4:237640-237659 | Msa1305900:CDS | 45.0% | |
| ! | TTGTGTTACTGTTGCGCTTG+GGG | + | chr8_4:237666-237685 | None:intergenic | 45.0% |
| GGATTCTCACCATTCGGATA+AGG | + | chr8_4:237802-237821 | None:intergenic | 45.0% | |
| GGCTTAGGATTCTCACCATT+CGG | + | chr8_4:235093-235112 | None:intergenic | 45.0% | |
| GAATCCTAAGCCTGTATCTC+CGG | - | chr8_4:237816-237835 | Msa1305900:CDS | 45.0% | |
| !! | TTAAAAAAATTAAAATTACT+TGG | + | chr8_4:236548-236567 | None:intergenic | 5.0% |
| TATGCTTTCCCACCTGGTTC+AGG | - | chr8_4:235060-235079 | Msa1305900:CDS | 50.0% | |
| GATAAGGTCCTGAACCAGGT+GGG | + | chr8_4:235071-235090 | None:intergenic | 50.0% | |
| AGATAAGGTCCTGAACCAGG+TGG | + | chr8_4:235072-235091 | None:intergenic | 50.0% | |
| TCCTAAGCCTGTATTCCCAG+TGG | - | chr8_4:235104-235123 | Msa1305900:CDS | 50.0% | |
| TCCGTGGAGACATAGGATCT+TGG | + | chr8_4:235543-235562 | None:intergenic | 50.0% | |
| TGTCTGTTCCGTGGAGACAT+AGG | + | chr8_4:235550-235569 | None:intergenic | 50.0% | |
| CCAACACTATGTCTGTTCCG+TGG | + | chr8_4:235559-235578 | None:intergenic | 50.0% | |
| CCACGGAACAGACATAGTGT+TGG | - | chr8_4:235556-235575 | Msa1305900:intron | 50.0% | |
| AGAAAGAGCTGGCCAAGACT+TGG | + | chr8_4:235620-235639 | None:intergenic | 50.0% | |
| GCAGTTTCTGTGCCTAGTGT+AGG | - | chr8_4:235700-235719 | Msa1305900:CDS | 50.0% | |
| ! | CTGAACAGAAGGAGCTCTAG+GGG | + | chr8_4:235734-235753 | None:intergenic | 50.0% |
| CCTGAACAGAAGGAGCTCTA+GGG | + | chr8_4:235735-235754 | None:intergenic | 50.0% | |
| ACCTGAACAGAAGGAGCTCT+AGG | + | chr8_4:235736-235755 | None:intergenic | 50.0% | |
| ACAGGACGAACATTGCGCTT+GGG | + | chr8_4:236217-236236 | None:intergenic | 50.0% | |
| AAGGTCCTGAACAACCAGGT+GGG | + | chr8_4:236279-236298 | None:intergenic | 50.0% | |
| TAAGGTCCTGAACAACCAGG+TGG | + | chr8_4:236280-236299 | None:intergenic | 50.0% | |
| GGATAAGGTCCTGAACAACC+AGG | + | chr8_4:236283-236302 | None:intergenic | 50.0% | |
| AAGCACGGAACGAAGAAGGA+AGG | - | chr8_4:236775-236794 | Msa1305900:intron | 50.0% | |
| TGCTATGCTCAGAGGGATCT+TGG | + | chr8_4:236847-236866 | None:intergenic | 50.0% | |
| AGATCCCTCTGAGCATAGCA+TGG | - | chr8_4:236847-236866 | Msa1305900:intron | 50.0% | |
| ! | TTTGGGGCATGACTTTCTCC+TGG | + | chr8_4:236983-237002 | None:intergenic | 50.0% |
| !! | TTGGTACCGACAACCAACAC+AGG | + | chr8_4:237061-237080 | None:intergenic | 50.0% |
| TGGTTGTCGGTACCAAGTCT+TGG | - | chr8_4:237065-237084 | Msa1305900:CDS | 50.0% | |
| AGAAAGAGCTGGCCAAGACT+TGG | + | chr8_4:235620-235639 | None:intergenic | 50.0% | |
| !! | GCTGTTTCTGTGCCTAGTGT+TGG | - | chr8_4:237154-237173 | Msa1305900:CDS | 50.0% |
| TCCTAGAGCTCCTTCTGTTC+AGG | - | chr8_4:237186-237205 | Msa1305900:CDS | 50.0% | |
| ACCTGAACAGAAGGAGCTCT+AGG | + | chr8_4:235736-235755 | None:intergenic | 50.0% | |
| !! | CGTCTCACTTTTCTGTGTCG+AGG | - | chr8_4:237692-237711 | Msa1305900:CDS | 50.0% |
| TGAGATGGAGGTCGAGTAAC+AGG | + | chr8_4:237739-237758 | None:intergenic | 50.0% | |
| GGAACAGCAATGTGAGATGG+AGG | + | chr8_4:237751-237770 | None:intergenic | 50.0% | |
| GCAGGAACAGCAATGTGAGA+TGG | + | chr8_4:237754-237773 | None:intergenic | 50.0% | |
| TATGCTTTCCCACCTGGTTC+AGG | - | chr8_4:235060-235079 | Msa1305900:CDS | 50.0% | |
| GATAAGGTCCTGAACCAGGT+GGG | + | chr8_4:235071-235090 | None:intergenic | 50.0% | |
| TTCGGATAAGGTCCTGAACC+AGG | + | chr8_4:237790-237809 | None:intergenic | 50.0% | |
| GGTTCAGGACCTTATCCGAA+TGG | - | chr8_4:237790-237809 | Msa1305900:CDS | 50.0% | |
| TTGTCATCAATGGCACGAGC+AGG | + | chr8_4:237868-237887 | None:intergenic | 50.0% | |
| !! | GACGTTCCTGTGTTGGTTGC+TGG | - | chr8_4:234958-234977 | Msa1305900:CDS | 55.0% |
| ! | CCAGGTGGGAAAGCATATGC+AGG | + | chr8_4:235057-235076 | None:intergenic | 55.0% |
| CCTGCATATGCTTTCCCACC+TGG | - | chr8_4:235054-235073 | Msa1305900:CDS | 55.0% | |
| GCCACTGGGAATACAGGCTT+AGG | + | chr8_4:235108-235127 | None:intergenic | 55.0% | |
| CTTGCTGCCACTGGGAATAC+AGG | + | chr8_4:235114-235133 | None:intergenic | 55.0% | |
| TTCCCAGTGGCAGCAAGACA+AGG | - | chr8_4:235117-235136 | Msa1305900:CDS | 55.0% | |
| CACCTTGTCTTGCTGCCACT+GGG | + | chr8_4:235122-235141 | None:intergenic | 55.0% | |
| TCACCTTGTCTTGCTGCCAC+TGG | + | chr8_4:235123-235142 | None:intergenic | 55.0% | |
| TTGAGTAAACCGGGTGAGGC+TGG | - | chr8_4:235360-235379 | Msa1305900:intron | 55.0% | |
| TGAGTAAACCGGGTGAGGCT+GGG | - | chr8_4:235361-235380 | Msa1305900:intron | 55.0% | |
| GGGGTAACGTGACCTACACT+AGG | + | chr8_4:235715-235734 | None:intergenic | 55.0% | |
| CCCTAGAGCTCCTTCTGTTC+AGG | - | chr8_4:235732-235751 | Msa1305900:CDS | 55.0% | |
| CAGGACGAACATTGCGCTTG+GGG | + | chr8_4:236216-236235 | None:intergenic | 55.0% | |
| CACAGGACGAACATTGCGCT+TGG | + | chr8_4:236218-236237 | None:intergenic | 55.0% | |
| CAAGCGCAATGTTCGTCCTG+TGG | - | chr8_4:236216-236235 | Msa1305900:intron | 55.0% | |
| ! | GGAAGAGCAATCTGAGGTGG+AGG | + | chr8_4:236244-236263 | None:intergenic | 55.0% |
| GCAGGAAGAGCAATCTGAGG+TGG | + | chr8_4:236247-236266 | None:intergenic | 55.0% | |
| ! | CCAGGTGGGAAAGCATATGC+AGG | + | chr8_4:235057-235076 | None:intergenic | 55.0% |
| CCTGCATATGCTTTCCCACC+TGG | - | chr8_4:235054-235073 | Msa1305900:CDS | 55.0% | |
| GCTTTCCCACCTGGTTGTTC+AGG | - | chr8_4:236271-236290 | Msa1305900:intron | 55.0% | |
| GGAGCAAGGTGACCAACACT+AGG | + | chr8_4:237169-237188 | None:intergenic | 55.0% | |
| !! | CAGAAGGAGCTCTAGGAGCA+AGG | + | chr8_4:237183-237202 | None:intergenic | 55.0% |
| !! | GGGCCTGGCTTTTGTTTGTG+TGG | + | chr8_4:237646-237665 | None:intergenic | 55.0% |
| ACAGGCGGCTGCTGATGATA+AGG | + | chr8_4:237721-237740 | None:intergenic | 55.0% | |
| GATGGAGGTCGAGTAACAGG+CGG | + | chr8_4:237736-237755 | None:intergenic | 55.0% | |
| ! | CCAGGTGGGAAAGCATATGC+AGG | + | chr8_4:235057-235076 | None:intergenic | 55.0% |
| CCTGCATATGCTTTCCCACC+TGG | - | chr8_4:235054-235073 | Msa1305900:CDS | 55.0% | |
| GGATAAGGTCCTGAACCAGG+TGG | + | chr8_4:237787-237806 | None:intergenic | 55.0% | |
| TCCTAAGCCTGTATCTCCGG+TGG | - | chr8_4:237819-237838 | Msa1305900:CDS | 55.0% | |
| AAACCTTGTCCTGCTGCCAC+CGG | + | chr8_4:237838-237857 | None:intergenic | 55.0% | |
| TCATCAATGGCACGAGCAGG+TGG | + | chr8_4:237865-237884 | None:intergenic | 55.0% | |
| GAGTAAACCGGGTGAGGCTG+GGG | - | chr8_4:235362-235381 | Msa1305900:intron | 60.0% | |
| TCTTAGTCCCCAGCCTCACC+CGG | + | chr8_4:235372-235391 | None:intergenic | 60.0% | |
| !! | ATCTGAGGTGGAGGTGCCAC+AGG | + | chr8_4:236235-236254 | None:intergenic | 60.0% |
| TCCTAAGCCTGTATCCCCGG+TGG | - | chr8_4:236315-236334 | Msa1305900:intron | 60.0% | |
| TCACCTTGTCCTGCTGCCAC+CGG | + | chr8_4:236334-236353 | None:intergenic | 60.0% | |
| TTGAGTGAACCGGGTGAGGC+TGG | - | chr8_4:236629-236648 | Msa1305900:intron | 60.0% | |
| TGAGTGAACCGGGTGAGGCT+GGG | - | chr8_4:236630-236649 | Msa1305900:intron | 60.0% | |
| TCTTAGTCCCCAGCCTCACC+CGG | + | chr8_4:235372-235391 | None:intergenic | 60.0% | |
| TTACTGTTGCGCTTGGGGCC+TGG | + | chr8_4:237661-237680 | None:intergenic | 60.0% | |
| GCCACCGGAGATACAGGCTT+AGG | + | chr8_4:237823-237842 | None:intergenic | 60.0% | |
| CGAACATTGCGCTTGGGGCC+TGG | + | chr8_4:236211-236230 | None:intergenic | 65.0% | |
| GCCACCGGGGATACAGGCTT+AGG | + | chr8_4:236319-236338 | None:intergenic | 65.0% | |
| ACCTTGTCCTGCTGCCACCG+GGG | + | chr8_4:236332-236351 | None:intergenic | 65.0% | |
| CACCTTGTCCTGCTGCCACC+GGG | + | chr8_4:236333-236352 | None:intergenic | 65.0% | |
| GAGTGAACCGGGTGAGGCTG+GGG | - | chr8_4:236631-236650 | Msa1305900:intron | 65.0% | |
| CCTGCTGCCACCGGAGATAC+AGG | + | chr8_4:237829-237848 | None:intergenic | 65.0% | |
| CCTGTATCTCCGGTGGCAGC+AGG | - | chr8_4:237826-237845 | Msa1305900:CDS | 65.0% | |
| TCTCCGGTGGCAGCAGGACA+AGG | - | chr8_4:237832-237851 | Msa1305900:CDS | 65.0% | |
| CCTGCTGCCACCGGGGATAC+AGG | + | chr8_4:236325-236344 | None:intergenic | 70.0% | |
| CCTGTATCCCCGGTGGCAGC+AGG | - | chr8_4:236322-236341 | Msa1305900:intron | 70.0% | |
| TCCCCGGTGGCAGCAGGACA+AGG | - | chr8_4:236328-236347 | Msa1305900:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 234844 | 237924 | 234844 | ID=Msa1305900;Name=Msa1305900 |
| chr8_4 | mRNA | 234844 | 237924 | 234844 | ID=Msa1305900-mRNA-1;Parent=Msa1305900;Name=Msa1305900-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0.2|1|1|1|5|0|504 |
| chr8_4 | exon | 237630 | 237924 | 237630 | ID=Msa1305900-mRNA-1:exon:20;Parent=Msa1305900-mRNA-1 |
| chr8_4 | exon | 237015 | 237265 | 237015 | ID=Msa1305900-mRNA-1:exon:19;Parent=Msa1305900-mRNA-1 |
| chr8_4 | exon | 236419 | 236623 | 236419 | ID=Msa1305900-mRNA-1:exon:18;Parent=Msa1305900-mRNA-1 |
| chr8_4 | exon | 235561 | 235994 | 235561 | ID=Msa1305900-mRNA-1:exon:17;Parent=Msa1305900-mRNA-1 |
| chr8_4 | exon | 234844 | 235173 | 234844 | ID=Msa1305900-mRNA-1:exon:16;Parent=Msa1305900-mRNA-1 |
| chr8_4 | CDS | 237630 | 237924 | 237630 | ID=Msa1305900-mRNA-1:cds;Parent=Msa1305900-mRNA-1 |
| chr8_4 | CDS | 237015 | 237265 | 237015 | ID=Msa1305900-mRNA-1:cds;Parent=Msa1305900-mRNA-1 |
| chr8_4 | CDS | 236419 | 236623 | 236419 | ID=Msa1305900-mRNA-1:cds;Parent=Msa1305900-mRNA-1 |
| chr8_4 | CDS | 235561 | 235994 | 235561 | ID=Msa1305900-mRNA-1:cds;Parent=Msa1305900-mRNA-1 |
| chr8_4 | CDS | 234844 | 235173 | 234844 | ID=Msa1305900-mRNA-1:cds;Parent=Msa1305900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
