Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789640 | XP_024639768.1 | 55.764 | 373 | 74 | 9 | 1 | 284 | 1 | 371 | 1.18e-104 | 330 |
| Msa0789640 | XP_024639768.1 | 75.000 | 304 | 47 | 5 | 199 | 499 | 61 | 338 | 9.36e-143 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789640 | A0A396HS21 | 78.599 | 257 | 33 | 3 | 251 | 504 | 22 | 259 | 5.09e-129 | 385 |
| Msa0789640 | A0A396HS21 | 81.395 | 129 | 22 | 2 | 126 | 253 | 112 | 239 | 9.51e-56 | 197 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063040 | Msa0789640 | 0.805511 | 1.288706e-49 | -8.615850e-47 |
| Msa0719080 | Msa0789640 | 0.966227 | 1.219926e-125 | -8.615850e-47 |
| Msa0719090 | Msa0789640 | 0.965005 | 4.786373e-124 | -8.615850e-47 |
| Msa0719390 | Msa0789640 | 0.998887 | 1.637335e-280 | -8.615850e-47 |
| Msa0789640 | Msa0850750 | 0.807673 | 4.507166e-50 | -8.615850e-47 |
| Msa0789640 | Msa0913860 | 0.808276 | 3.352834e-50 | -8.615850e-47 |
| Msa0789640 | Msa0914840 | 0.839441 | 1.581410e-57 | -8.615850e-47 |
| Msa0789640 | Msa0988690 | 0.810986 | 8.775372e-51 | -8.615850e-47 |
| Msa0789640 | Msa1077610 | 0.868439 | 6.526201e-66 | -8.615850e-47 |
| Msa0789640 | Msa1077620 | 0.817574 | 3.073351e-52 | -8.615850e-47 |
| Msa0789640 | Msa1138460 | 0.842915 | 1.931230e-58 | -8.615850e-47 |
| Msa0789640 | Msa1240320 | 0.812319 | 4.501355e-51 | -8.615850e-47 |
| Msa0789640 | Msa1305900 | 0.999516 | 1.625906e-318 | -8.615850e-47 |
| Msa0789640 | Msa1338620 | 0.843293 | 1.531744e-58 | -8.615850e-47 |
| Msa0789640 | Msa1394840 | 0.855869 | 4.722040e-62 | -8.615850e-47 |
| Msa0213670 | Msa0789640 | 0.800973 | 1.121048e-48 | -8.615850e-47 |
| Msa0427350 | Msa0789640 | 0.809235 | 2.091206e-50 | -8.615850e-47 |
| Msa0242320 | Msa0789640 | 0.810546 | 1.092515e-50 | -8.615850e-47 |
| Msa0500520 | Msa0789640 | 0.820501 | 6.634401e-53 | -8.615850e-47 |
| Msa0500530 | Msa0789640 | 0.800930 | 1.143619e-48 | -8.615850e-47 |
| Msa0553900 | Msa0789640 | 0.836051 | 1.173847e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789640 | MtrunA17_Chr5g0409951 | 78.599 | 257 | 33 | 3 | 251 | 504 | 22 | 259 | 9.79e-133 | 385 |
| Msa0789640 | MtrunA17_Chr5g0409951 | 81.395 | 129 | 22 | 2 | 126 | 253 | 112 | 239 | 1.83e-59 | 197 |
| Msa0789640 | MtrunA17_Chr5g0440821 | 77.246 | 167 | 27 | 3 | 339 | 494 | 28 | 194 | 9.82e-72 | 245 |
| Msa0789640 | MtrunA17_Chr5g0440821 | 67.857 | 168 | 25 | 4 | 114 | 253 | 18 | 184 | 7.69e-53 | 192 |
| Msa0789640 | MtrunA17_Chr5g0440821 | 62.162 | 74 | 14 | 3 | 1 | 70 | 1 | 64 | 1.04e-13 | 73.9 |
| Msa0789640 | MtrunA17_Chr5g0440751 | 61.677 | 167 | 27 | 3 | 329 | 495 | 8 | 137 | 1.08e-50 | 171 |
| Msa0789640 | MtrunA17_Chr5g0440751 | 63.704 | 135 | 30 | 4 | 120 | 253 | 10 | 126 | 1.56e-35 | 131 |
| Msa0789640 | MtrunA17_Chr5g0440721 | 54.598 | 174 | 30 | 4 | 322 | 495 | 7 | 131 | 9.14e-42 | 147 |
| Msa0789640 | MtrunA17_Chr5g0440721 | 54.167 | 144 | 34 | 4 | 111 | 253 | 8 | 120 | 3.32e-29 | 112 |
| Msa0789640 | MtrunA17_Chr5g0440721 | 43.571 | 140 | 30 | 6 | 1 | 104 | 1 | 127 | 2.04e-14 | 71.2 |
| Msa0789640 | MtrunA17_Chr5g0409941 | 75.238 | 105 | 19 | 3 | 1 | 98 | 1 | 105 | 1.58e-39 | 139 |
| Msa0789640 | MtrunA17_Chr5g0409941 | 85.714 | 42 | 5 | 1 | 331 | 372 | 34 | 74 | 3.67e-16 | 74.3 |
| Msa0789640 | MtrunA17_Chr5g0409941 | 84.848 | 33 | 5 | 0 | 450 | 482 | 74 | 106 | 3.18e-11 | 60.5 |
| Msa0789640 | MtrunA17_Chr5g0440731 | 50.000 | 100 | 41 | 2 | 249 | 340 | 13 | 111 | 2.90e-16 | 79.3 |
| Msa0789640 | MtrunA17_Chr5g0440741 | 49.000 | 100 | 37 | 3 | 249 | 340 | 13 | 106 | 5.02e-15 | 75.5 |
| Msa0789640 | MtrunA17_Chr5g0409841 | 40.336 | 119 | 51 | 4 | 257 | 359 | 4 | 118 | 3.41e-14 | 72.0 |
| Msa0789640 | MtrunA17_Chr5g0409831 | 45.977 | 87 | 43 | 3 | 257 | 343 | 4 | 86 | 1.88e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 147 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACATGATTCTTAGGTTT+TGG | 0.214289 | 5_3:-25236 | None:intergenic |
| TCAACATGATTCTTAGGTTT+TGG | 0.216772 | 5_3:-27330 | None:intergenic |
| GAAACTTTCTCAACATTCTT+AGG | 0.220690 | 5_3:-25876 | None:intergenic |
| TTCTCAACATTCTTAGGTTT+TGG | 0.226512 | 5_3:-25870 | None:intergenic |
| TCATTATCAACATGATTCTT+AGG | 0.228118 | 5_3:-27336 | None:intergenic |
| CCCTAGAGCTCCTTCTGTTC+AGG | 0.266787 | 5_3:+25950 | Msa0789640:CDS |
| ACATTCTCAACATGATTCTT+AGG | 0.266972 | 5_3:-25242 | None:intergenic |
| GCTTTCCCACCTGGTTGTTC+AGG | 0.273808 | 5_3:+26489 | Msa0789640:CDS |
| CAAAGAGAGAGAATAGAAAA+AGG | 0.274706 | 5_3:+27217 | Msa0789640:CDS |
| TCCTAGAGCTCCTTCTGTTC+AGG | 0.288148 | 5_3:+27404 | Msa0789640:CDS |
| AAACAGAAGTTAAACTGTTC+TGG | 0.303211 | 5_3:+27806 | Msa0789640:intron |
| GACGTTCCTGTGTTGGTTGC+TGG | 0.314360 | 5_3:+25176 | Msa0789640:CDS |
| TCACCTTGTCTTGCTGCCAC+TGG | 0.327183 | 5_3:-25338 | None:intergenic |
| TATGCTTTCCCACCTGGTTC+AGG | 0.329227 | 5_3:+25278 | Msa0789640:CDS |
| TATGCTTTCCCACCTGGTTC+AGG | 0.329227 | 5_3:+27992 | Msa0789640:CDS |
| TTTATTTAAATTAGTCTTAC+GGG | 0.332638 | 5_3:-27028 | None:intergenic |
| CAACAGAAGTCAAACGGTTC+TGG | 0.334816 | 5_3:+26357 | Msa0789640:intron |
| CCTGCTGCCACCGGGGATAC+AGG | 0.343744 | 5_3:-26540 | None:intergenic |
| GTAAGACTAATTTAAATAAA+CGG | 0.344589 | 5_3:+27031 | Msa0789640:CDS |
| TTGAAGAGAGGGCCAAGTTT+TGG | 0.345165 | 5_3:+25113 | Msa0789640:CDS |
| GCTCATTTAAATCAATTTGA+TGG | 0.348445 | 5_3:-25725 | None:intergenic |
| CCTGCATATGCTTTCCCACC+TGG | 0.358776 | 5_3:+26480 | Msa0789640:CDS |
| CCTGCATATGCTTTCCCACC+TGG | 0.358776 | 5_3:+27986 | Msa0789640:CDS |
| CACCTTGTCCTGCTGCCACC+GGG | 0.363220 | 5_3:-26548 | None:intergenic |
| GATGTTCCTGTGTTGGTTGT+TGG | 0.372353 | 5_3:+25810 | Msa0789640:CDS |
| CCTGCATATGCTTTCCCACC+TGG | 0.375591 | 5_3:+25272 | Msa0789640:CDS |
| CACCTTGTCTTGCTGCCACT+GGG | 0.379729 | 5_3:-25337 | None:intergenic |
| CTTGCTGCCACTGGGAATAC+AGG | 0.380506 | 5_3:-25329 | None:intergenic |
| TGGAAAATGTTTGTCATCAA+TGG | 0.380623 | 5_3:-28092 | None:intergenic |
| TAAGACTAATTTAAATAAAC+GGG | 0.381254 | 5_3:+27032 | Msa0789640:CDS |
| TGCTATGCTCAGAGGGATCT+TGG | 0.382368 | 5_3:-27062 | None:intergenic |
| CGAACATTGCGCTTGGGGCC+TGG | 0.387615 | 5_3:-26426 | None:intergenic |
| TGAGATGGAGGTCGAGTAAC+AGG | 0.387968 | 5_3:-27953 | None:intergenic |
| TTACTGTTGCGCTTGGGGCC+TGG | 0.395341 | 5_3:-27875 | None:intergenic |
| AATTATGGTGATTGCTGATA+AGG | 0.402409 | 5_3:+25058 | None:intergenic |
| GGATTCTCACCATTCGGATA+AGG | 0.417277 | 5_3:-28016 | None:intergenic |
| TTTGTGTTACTGTTGCGCTT+GGG | 0.420054 | 5_3:-27881 | None:intergenic |
| GTTTATTTAAATTAGTCTTA+CGG | 0.420223 | 5_3:-27029 | None:intergenic |
| TGACACCGATATAATTAAGT+TGG | 0.420892 | 5_3:+27110 | Msa0789640:CDS |
| ACGATCCAACTTAATTATAT+CGG | 0.421412 | 5_3:-27115 | None:intergenic |
| TCACCTTGTCCTGCTGCCAC+CGG | 0.427981 | 5_3:-26549 | None:intergenic |
| CCTGCTGCCACCGGAGATAC+AGG | 0.429981 | 5_3:-28043 | None:intergenic |
| TTTGGGGCATGACTTTCTCC+TGG | 0.432296 | 5_3:-27198 | None:intergenic |
| ATTTGTGTTACTGTTGCGCT+TGG | 0.435565 | 5_3:-27882 | None:intergenic |
| GGATTAGTACCATTCGGATA+AGG | 0.436901 | 5_3:-26513 | None:intergenic |
| GGCTTAGGATTCTCACCATT+CGG | 0.437848 | 5_3:-28022 | None:intergenic |
| ACAGGACGAACATTGCGCTT+GGG | 0.437958 | 5_3:-26432 | None:intergenic |
| ATAGGATCTTGGACTGAAAC+CGG | 0.448717 | 5_3:-25747 | None:intergenic |
| GGCTTAGGATTAGTACCATT+CGG | 0.449867 | 5_3:-26519 | None:intergenic |
| GATGTTCCTGTGTTGGTTGT+CGG | 0.459995 | 5_3:+27270 | Msa0789640:CDS |
| CCTGTATCCCCGGTGGCAGC+AGG | 0.463627 | 5_3:+26540 | Msa0789640:CDS |
| CACAGGACGAACATTGCGCT+TGG | 0.470103 | 5_3:-26433 | None:intergenic |
| CGGTGTCAAATTTCTCGTGT+TGG | 0.471082 | 5_3:-27095 | None:intergenic |
| GAATCCTAAGCCTGTATCTC+CGG | 0.475680 | 5_3:+28033 | Msa0789640:CDS |
| CCTGTATCTCCGGTGGCAGC+AGG | 0.482035 | 5_3:+28043 | Msa0789640:CDS |
| ATCTGAGGTGGAGGTGCCAC+AGG | 0.482175 | 5_3:-26450 | None:intergenic |
| GCTGTTTCTGTGCCTAGTGT+TGG | 0.486767 | 5_3:+27372 | Msa0789640:CDS |
| TCAAATTGATTTAAATGAGC+CGG | 0.491679 | 5_3:+25728 | Msa0789640:CDS |
| TAAGAATCATGTTGATAATG+AGG | 0.491746 | 5_3:+27338 | Msa0789640:CDS |
| ACAGGCGGCTGCTGATGATA+AGG | 0.497930 | 5_3:-27935 | None:intergenic |
| ACCTGAACAGAAGGAGCTCT+AGG | 0.498160 | 5_3:-25951 | None:intergenic |
| TCACCACACAAACAAAAGCC+AGG | 0.499595 | 5_3:+27857 | Msa0789640:CDS |
| GGATTCTCACCATTCAGATA+AGG | 0.502739 | 5_3:-25302 | None:intergenic |
| ATTCAAGCTGAGTCAGTACC+AGG | 0.506755 | 5_3:+27180 | Msa0789640:CDS |
| GTTTGAGCATCAGAAAGAAC+TGG | 0.508546 | 5_3:-25212 | None:intergenic |
| AAGCGCAACAGTAACACAAA+TGG | 0.509649 | 5_3:+27884 | Msa0789640:CDS |
| CCTGAACAGAAGGAGCTCTA+GGG | 0.512468 | 5_3:-25950 | None:intergenic |
| TCCCCGGTGGCAGCAGGACA+AGG | 0.513079 | 5_3:+26546 | Msa0789640:CDS |
| GTTGAGAAAGTTTCTGCTAA+GGG | 0.514785 | 5_3:+25885 | Msa0789640:CDS |
| TTGTGTTACTGTTGCGCTTG+GGG | 0.516114 | 5_3:-27880 | None:intergenic |
| TAGAAAGCACGGAACGAAGA+AGG | 0.519265 | 5_3:+26989 | Msa0789640:intron |
| TCCGTGGAGACATAGGATCT+TGG | 0.520218 | 5_3:-25758 | None:intergenic |
| GCCACTGGGAATACAGGCTT+AGG | 0.525101 | 5_3:-25323 | None:intergenic |
| TTCAGATAAGGTCCTGAACC+AGG | 0.526807 | 5_3:-25290 | None:intergenic |
| AGAAAGAGCTGGCCAAGACT+TGG | 0.528166 | 5_3:-25835 | None:intergenic |
| CTTAAATCAATATTGAAGAG+AGG | 0.529776 | 5_3:+25101 | Msa0789640:CDS |
| TGTTGAGAAAGTTTCTGCTA+AGG | 0.531640 | 5_3:+25884 | Msa0789640:CDS |
| CAGGACGAACATTGCGCTTG+GGG | 0.533224 | 5_3:-26431 | None:intergenic |
| AGAAAGAGCTGGCCAAGACT+TGG | 0.534366 | 5_3:-27295 | None:intergenic |
| GGTGATGTCATCTTATTCAT+CGG | 0.534902 | 5_3:-27839 | None:intergenic |
| TAATCCTAAGCCTGTATCCC+CGG | 0.538156 | 5_3:+26530 | Msa0789640:CDS |
| GCCACCGGGGATACAGGCTT+AGG | 0.538751 | 5_3:-26534 | None:intergenic |
| GCAGTTTCTGTGCCTAGTGT+AGG | 0.538987 | 5_3:+25918 | Msa0789640:CDS |
| TGTCTGTTCCGTGGAGACAT+AGG | 0.543654 | 5_3:-25765 | None:intergenic |
| GCCACCGGAGATACAGGCTT+AGG | 0.545376 | 5_3:-28037 | None:intergenic |
| TCATCACGCTATCAAAAGCC+AGG | 0.546703 | 5_3:+26408 | Msa0789640:CDS |
| TTGTCATCAATGGCACGAGC+AGG | 0.548498 | 5_3:-28082 | None:intergenic |
| AACAAACGAACCTGAACAGA+AGG | 0.548968 | 5_3:-27414 | None:intergenic |
| TGGTTGTCGGTACCAAGTCT+TGG | 0.550500 | 5_3:+27283 | Msa0789640:CDS |
| TTAAATCAATATTGAAGAGA+GGG | 0.551911 | 5_3:+25102 | Msa0789640:CDS |
| GTGATTCAACAGAAGTCAAA+CGG | 0.553306 | 5_3:+26351 | Msa0789640:intron |
| TGGTTGTTGGAACCAAGTCT+TGG | 0.553347 | 5_3:+25823 | Msa0789640:CDS |
| GGTTCAGGACCTTATCTGAA+TGG | 0.559427 | 5_3:+25293 | Msa0789640:CDS |
| AAACCTTGTCCTGCTGCCAC+CGG | 0.561642 | 5_3:-28052 | None:intergenic |
| TTCGGATAAGGTCCTGAACC+AGG | 0.561660 | 5_3:-28004 | None:intergenic |
| TCTCCGGTGGCAGCAGGACA+AGG | 0.563672 | 5_3:+28049 | Msa0789640:CDS |
| TGTTCCATGCTATGCTCAGA+GGG | 0.566140 | 5_3:-27069 | None:intergenic |
| GGAAGAGCAATCTGAGGTGG+AGG | 0.569429 | 5_3:-26459 | None:intergenic |
| AACAAACTAACCTGAACAGA+AGG | 0.569589 | 5_3:-25960 | None:intergenic |
| TTCCCAGTGGCAGCAAGACA+AGG | 0.570857 | 5_3:+25335 | Msa0789640:CDS |
| TGGTTGCTGGAACTAAGTCT+TGG | 0.574249 | 5_3:+25189 | Msa0789640:CDS |
| ACCTGAACAGAAGGAGCTCT+AGG | 0.574556 | 5_3:-27405 | None:intergenic |
| CAAGCGCAATGTTCGTCCTG+TGG | 0.574699 | 5_3:+26434 | Msa0789640:CDS |
| CATTTAAATCAATTTGATGG+AGG | 0.575538 | 5_3:-25722 | None:intergenic |
| TCATCAATGGCACGAGCAGG+TGG | 0.575928 | 5_3:-28079 | None:intergenic |
| AAGAATCATGTTGATAATGA+GGG | 0.578626 | 5_3:+27339 | Msa0789640:CDS |
| AAGTGTTGATGTTCCTGTGT+TGG | 0.580284 | 5_3:+25803 | Msa0789640:CDS |
| AAGTGTTGATGTTCCTGTGT+TGG | 0.580284 | 5_3:+27263 | Msa0789640:CDS |
| AAATGATGACGTTCCTGTGT+TGG | 0.580522 | 5_3:+25169 | Msa0789640:CDS |
| CCAGGTGGGAAAGCATATGC+AGG | 0.582086 | 5_3:-25272 | None:intergenic |
| CAGAAGGAGCTCTAGGAGCA+AGG | 0.582504 | 5_3:-27398 | None:intergenic |
| TTGTTCCATGCTATGCTCAG+AGG | 0.583511 | 5_3:-27070 | None:intergenic |
| CCAGGTGGGAAAGCATATGC+AGG | 0.588904 | 5_3:-27986 | None:intergenic |
| CCAGGTGGGAAAGCATATGC+AGG | 0.591343 | 5_3:-26480 | None:intergenic |
| GTTTGAGCATCAGAAAGAGC+TGG | 0.591524 | 5_3:-25846 | None:intergenic |
| GTTTGAACATCAGAAAGAGC+TGG | 0.591524 | 5_3:-27306 | None:intergenic |
| GCAGGAACAGCAATGTGAGA+TGG | 0.592310 | 5_3:-27968 | None:intergenic |
| AGATCCCTCTGAGCATAGCA+TGG | 0.596307 | 5_3:+27065 | Msa0789640:CDS |
| GGAGCAAGGTGACCAACACT+AGG | 0.606495 | 5_3:-27384 | None:intergenic |
| CTGAACAGAAGGAGCTCTAG+GGG | 0.611281 | 5_3:-25949 | None:intergenic |
| TCCAAGATCCTATGTCTCCA+CGG | 0.613629 | 5_3:+25757 | Msa0789640:CDS |
| TGTTCAGGACCTTATCCGAA+TGG | 0.616249 | 5_3:+26504 | Msa0789640:CDS |
| GCAGGAAGAGCAATCTGAGG+TGG | 0.628210 | 5_3:-26462 | None:intergenic |
| GGGGTAACGTGACCTACACT+AGG | 0.628823 | 5_3:-25930 | None:intergenic |
| GATTGCTGATAAGGACAAGA+GGG | 0.630743 | 5_3:+25067 | Msa0789640:CDS |
| GGAACAGCAATGTGAGATGG+AGG | 0.639975 | 5_3:-27965 | None:intergenic |
| TCCTAAGCCTGTATCTCCGG+TGG | 0.640309 | 5_3:+28036 | Msa0789640:CDS |
| GGTTCAGGACCTTATCCGAA+TGG | 0.640623 | 5_3:+28007 | Msa0789640:CDS |
| AAGCACGGAACGAAGAAGGA+AGG | 0.644921 | 5_3:+26993 | Msa0789640:CDS |
| TTAGTTCCAGCAACCAACAC+AGG | 0.650533 | 5_3:-25182 | None:intergenic |
| TGATTGCTGATAAGGACAAG+AGG | 0.652218 | 5_3:+25066 | Msa0789640:CDS |
| TTGGTACCGACAACCAACAC+AGG | 0.652825 | 5_3:-27276 | None:intergenic |
| GATAAGGTCCTGAACCAGGT+GGG | 0.657071 | 5_3:-25286 | None:intergenic |
| GATAAGGTCCTGAACCAGGT+GGG | 0.657071 | 5_3:-28000 | None:intergenic |
| GGATAAGGTCCTGAACAACC+AGG | 0.662311 | 5_3:-26498 | None:intergenic |
| TTGGTTCCAACAACCAACAC+AGG | 0.665985 | 5_3:-25816 | None:intergenic |
| CCAACACTATGTCTGTTCCG+TGG | 0.667873 | 5_3:-25774 | None:intergenic |
| CCACGGAACAGACATAGTGT+TGG | 0.674520 | 5_3:+25774 | Msa0789640:CDS |
| AAGGTCCTGAACAACCAGGT+GGG | 0.679074 | 5_3:-26494 | None:intergenic |
| ACCTTGTCCTGCTGCCACCG+GGG | 0.684672 | 5_3:-26547 | None:intergenic |
| AGATAAGGTCCTGAACCAGG+TGG | 0.691288 | 5_3:-25287 | None:intergenic |
| TCCTAAGCCTGTATTCCCAG+TGG | 0.691555 | 5_3:+25322 | Msa0789640:CDS |
| TCCTAAGCCTGTATCCCCGG+TGG | 0.692551 | 5_3:+26533 | Msa0789640:CDS |
| GGATAAGGTCCTGAACCAGG+TGG | 0.699303 | 5_3:-28001 | None:intergenic |
| TAAGGTCCTGAACAACCAGG+TGG | 0.716289 | 5_3:-26495 | None:intergenic |
| TATGCAGGAAGAGCAATCTG+AGG | 0.717586 | 5_3:-26465 | None:intergenic |
| GATGGAGGTCGAGTAACAGG+CGG | 0.719570 | 5_3:-27950 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTTAACTTACATAAT+TGG | + | chr5_3:25507-25526 | Msa0789640:intron | 15.0% |
| !!! | AATTCTTATAGTTGTTTTTT+TGG | + | chr5_3:25687-25706 | Msa0789640:intron | 15.0% |
| !!! | ATTTTGTTAACTTACATAAT+TGG | + | chr5_3:25507-25526 | Msa0789640:intron | 15.0% |
| !!! | TTTATTTAAATTAGTCTTAC+GGG | - | chr5_3:27031-27050 | None:intergenic | 15.0% |
| !!! | GTTTATTTAAATTAGTCTTA+CGG | - | chr5_3:27032-27051 | None:intergenic | 15.0% |
| !! | GTAAGACTAATTTAAATAAA+CGG | + | chr5_3:27031-27050 | Msa0789640:CDS | 15.0% |
| !! | TAAGACTAATTTAAATAAAC+GGG | + | chr5_3:27032-27051 | Msa0789640:CDS | 15.0% |
| !!! | TCATATTTTTTTTTCTTCAT+TGG | + | chr5_3:27694-27713 | Msa0789640:intron | 15.0% |
| !! | TTAAATCAATATTGAAGAGA+GGG | + | chr5_3:25102-25121 | Msa0789640:CDS | 20.0% |
| !!! | AAGTTTTGGTAAGAAAAAAA+GGG | + | chr5_3:25127-25146 | Msa0789640:CDS | 20.0% |
| !! | ATTATGATATCTTCTCATTA+TGG | + | chr5_3:25452-25471 | Msa0789640:intron | 20.0% |
| !! | TGTAAGTTAACAAAATTACT+TGG | - | chr5_3:25503-25522 | None:intergenic | 20.0% |
| !! | AAGAATTAAGAAGATTTAAC+TGG | + | chr5_3:25606-25625 | Msa0789640:intron | 20.0% |
| !!! | CATGCATAATATTTTTTGAA+TGG | - | chr5_3:25649-25668 | None:intergenic | 20.0% |
| !! | TGTAAGTTAACAAAATTACT+TGG | - | chr5_3:25503-25522 | None:intergenic | 20.0% |
| !!! | ATTTTTTTAACTCGCATAAT+TGG | + | chr5_3:26776-26795 | Msa0789640:intron | 20.0% |
| !! | AAGAATTAAGAAGATTTAAC+TGG | + | chr5_3:25606-25625 | Msa0789640:intron | 20.0% |
| !!! | CATGCATAATATTTTTTGAA+TGG | - | chr5_3:25649-25668 | None:intergenic | 20.0% |
| !!! | GTTTTTTTATATAGAAAGCA+CGG | + | chr5_3:26978-26997 | Msa0789640:intron | 20.0% |
| ! | CTTAAATCAATATTGAAGAG+AGG | + | chr5_3:25101-25120 | Msa0789640:CDS | 25.0% |
| !!! | CTTTTTTTCTTACCAAAACT+TGG | - | chr5_3:25128-25147 | None:intergenic | 25.0% |
| !!! | CAAGTTTTGGTAAGAAAAAA+AGG | + | chr5_3:25126-25145 | Msa0789640:CDS | 25.0% |
| ! | TAAGAAAAAAAGGGTTCTTT+GGG | + | chr5_3:25136-25155 | Msa0789640:CDS | 25.0% |
| ! | CATTTAAATCAATTTGATGG+AGG | - | chr5_3:25725-25744 | None:intergenic | 25.0% |
| ! | GCTCATTTAAATCAATTTGA+TGG | - | chr5_3:25728-25747 | None:intergenic | 25.0% |
| !! | TCAAATTGATTTAAATGAGC+CGG | + | chr5_3:25728-25747 | Msa0789640:CDS | 25.0% |
| ! | TTCTTATGCTTGCAATAATA+TGG | - | chr5_3:26126-26145 | None:intergenic | 25.0% |
| ! | TAGAGTCGACAAATTTATTT+AGG | + | chr5_3:26215-26234 | Msa0789640:intron | 25.0% |
| !! | TTTTACATTATTGCTAACTC+TGG | + | chr5_3:26282-26301 | Msa0789640:intron | 25.0% |
| ! | TTTACATTATTGCTAACTCT+GGG | + | chr5_3:26283-26302 | Msa0789640:intron | 25.0% |
| ! | TCATTATGATATCTTCTTTG+TGG | + | chr5_3:26661-26680 | Msa0789640:intron | 25.0% |
| !! | TGTCGATATAATTCGAATTT+TGG | + | chr5_3:26936-26955 | Msa0789640:intron | 25.0% |
| ! | TGGTTTCAAATTCATATAGT+TGG | + | chr5_3:26956-26975 | Msa0789640:intron | 25.0% |
| ! | ACGATCCAACTTAATTATAT+CGG | - | chr5_3:27118-27137 | None:intergenic | 25.0% |
| !! | TTTTTCTATTCTCTCTCTTT+GGG | - | chr5_3:27218-27237 | None:intergenic | 25.0% |
| ! | AAAGAGAGAGAATAGAAAAA+GGG | + | chr5_3:27218-27237 | Msa0789640:CDS | 25.0% |
| ! | TCATTATCAACATGATTCTT+AGG | - | chr5_3:27339-27358 | None:intergenic | 25.0% |
| !!! | TAAGAATCATGTTGATAATG+AGG | + | chr5_3:27338-27357 | Msa0789640:CDS | 25.0% |
| !!! | AAGAATCATGTTGATAATGA+GGG | + | chr5_3:27339-27358 | Msa0789640:CDS | 25.0% |
| !! | TTAGTGTAATGTGATTTTGA+TGG | + | chr5_3:27491-27510 | Msa0789640:intron | 25.0% |
| ! | TTCTTATGCTTGCAATAATA+TGG | - | chr5_3:26126-26145 | None:intergenic | 25.0% |
| ! | AGTCAACCAGTAAAAAATAT+TGG | + | chr5_3:27649-27668 | Msa0789640:intron | 25.0% |
| ! | TTCTACAATATTGTTAACTC+TGG | + | chr5_3:27731-27750 | Msa0789640:intron | 25.0% |
| ! | TCTACAATATTGTTAACTCT+GGG | + | chr5_3:27732-27751 | Msa0789640:intron | 25.0% |
| GTAAGAAAAAAAGGGTTCTT+TGG | + | chr5_3:25135-25154 | Msa0789640:CDS | 30.0% | |
| ! | TCAACATGATTCTTAGGTTT+TGG | - | chr5_3:25239-25258 | None:intergenic | 30.0% |
| ACATTCTCAACATGATTCTT+AGG | - | chr5_3:25245-25264 | None:intergenic | 30.0% | |
| GCAACTAAAAGTCATTTCAA+TGG | - | chr5_3:25397-25416 | None:intergenic | 30.0% | |
| ! | TCTCATTATGGTTCTGTAAT+TGG | + | chr5_3:25464-25483 | Msa0789640:intron | 30.0% |
| !! | CTGTAATTGGTTTGAGTAAT+TGG | + | chr5_3:25477-25496 | Msa0789640:intron | 30.0% |
| ! | AGGCATAGTTGATTTCATTA+AGG | + | chr5_3:25546-25565 | Msa0789640:intron | 30.0% |
| ! | TTCTCAACATTCTTAGGTTT+TGG | - | chr5_3:25873-25892 | None:intergenic | 30.0% |
| GAAACTTTCTCAACATTCTT+AGG | - | chr5_3:25879-25898 | None:intergenic | 30.0% | |
| !!! | GTTTTTTATCTTTCCTTCGA+TGG | + | chr5_3:26245-26264 | Msa0789640:intron | 30.0% |
| !! | ACAACTTTTATTTCCATCGA+AGG | - | chr5_3:26261-26280 | None:intergenic | 30.0% |
| !! | CTGTAATTGGTTTGAGTAAT+TGG | + | chr5_3:25477-25496 | Msa0789640:intron | 30.0% |
| ! | AGGCATAGTTGATTTCATTA+AGG | + | chr5_3:25546-25565 | Msa0789640:intron | 30.0% |
| TGACACCGATATAATTAAGT+TGG | + | chr5_3:27110-27129 | Msa0789640:CDS | 30.0% | |
| ! | TTTTCTATTCTCTCTCTTTG+GGG | - | chr5_3:27217-27236 | None:intergenic | 30.0% |
| ! | CTTTTTCTATTCTCTCTCTT+TGG | - | chr5_3:27219-27238 | None:intergenic | 30.0% |
| CAAAGAGAGAGAATAGAAAA+AGG | + | chr5_3:27217-27236 | Msa0789640:CDS | 30.0% | |
| ! | TCAACATGATTCTTAGGTTT+TGG | - | chr5_3:25239-25258 | None:intergenic | 30.0% |
| !!! | GACTCTCCAATATTTTTTAC+TGG | - | chr5_3:27658-27677 | None:intergenic | 30.0% |
| AAACAGAAGTTAAACTGTTC+TGG | + | chr5_3:27806-27825 | Msa0789640:intron | 30.0% | |
| TGGAAAATGTTTGTCATCAA+TGG | - | chr5_3:28095-28114 | None:intergenic | 30.0% | |
| !!! | GCATCGTTTTTTGAGTAAAC+CGG | + | chr5_3:25568-25587 | Msa0789640:intron | 35.0% |
| !!! | CATCGTTTTTTGAGTAAACC+GGG | + | chr5_3:25569-25588 | Msa0789640:intron | 35.0% |
| TGTTGAGAAAGTTTCTGCTA+AGG | + | chr5_3:25884-25903 | Msa0789640:CDS | 35.0% | |
| GTTGAGAAAGTTTCTGCTAA+GGG | + | chr5_3:25885-25904 | Msa0789640:CDS | 35.0% | |
| AACAAACTAACCTGAACAGA+AGG | - | chr5_3:25963-25982 | None:intergenic | 35.0% | |
| ! | TTTGCCTGATTTTCTGTGTA+TGG | + | chr5_3:26324-26343 | Msa0789640:intron | 35.0% |
| AGATCCATACACAGAAAATC+AGG | - | chr5_3:26331-26350 | None:intergenic | 35.0% | |
| GTGATTCAACAGAAGTCAAA+CGG | + | chr5_3:26351-26370 | Msa0789640:intron | 35.0% | |
| TTGCTTTGATACCATTGAAG+TGG | + | chr5_3:26594-26613 | Msa0789640:intron | 35.0% | |
| ! | CTTCTTTGTGGTTCTGTAAT+TGG | + | chr5_3:26673-26692 | Msa0789640:intron | 35.0% |
| ! | TTGGCTAGTTCATCTGATTA+AGG | + | chr5_3:26735-26754 | Msa0789640:intron | 35.0% |
| TAGTTCATCTGATTAAGGCT+TGG | + | chr5_3:26740-26759 | Msa0789640:intron | 35.0% | |
| ! | TTGGCTAGTTGATCTGATTA+AGG | + | chr5_3:26795-26814 | Msa0789640:intron | 35.0% |
| ! | AGAATAGAAAAAGGGTGCAT+TGG | + | chr5_3:27226-27245 | Msa0789640:CDS | 35.0% |
| ! | GAATAGAAAAAGGGTGCATT+GGG | + | chr5_3:27227-27246 | Msa0789640:CDS | 35.0% |
| GAGAGTCGACAAATTTATGT+AGG | + | chr5_3:27671-27690 | Msa0789640:intron | 35.0% | |
| ! | TTTGCCTGATTTTCTGTGTA+TGG | + | chr5_3:26324-26343 | Msa0789640:intron | 35.0% |
| AGATCCATACACAGAAAATC+AGG | - | chr5_3:26331-26350 | None:intergenic | 35.0% | |
| GGTGATGTCATCTTATTCAT+CGG | - | chr5_3:27842-27861 | None:intergenic | 35.0% | |
| TGATTGCTGATAAGGACAAG+AGG | + | chr5_3:25066-25085 | Msa0789640:CDS | 40.0% | |
| GATTGCTGATAAGGACAAGA+GGG | + | chr5_3:25067-25086 | Msa0789640:CDS | 40.0% | |
| ! | AAATGATGACGTTCCTGTGT+TGG | + | chr5_3:25169-25188 | Msa0789640:CDS | 40.0% |
| GTTTGAGCATCAGAAAGAAC+TGG | - | chr5_3:25215-25234 | None:intergenic | 40.0% | |
| GGATTCTCACCATTCAGATA+AGG | - | chr5_3:25305-25324 | None:intergenic | 40.0% | |
| ! | TTGGCTAGCTCATCTGATTA+AGG | + | chr5_3:25526-25545 | Msa0789640:intron | 40.0% |
| !!! | TTTTTTGAGTAAACCGGGTG+AGG | + | chr5_3:25574-25593 | Msa0789640:intron | 40.0% |
| ATAGGATCTTGGACTGAAAC+CGG | - | chr5_3:25750-25769 | None:intergenic | 40.0% | |
| !! | AAGTGTTGATGTTCCTGTGT+TGG | + | chr5_3:25803-25822 | Msa0789640:CDS | 40.0% |
| ! | GGATTAGTACCATTCGGATA+AGG | - | chr5_3:26516-26535 | None:intergenic | 40.0% |
| ! | GGCTTAGGATTAGTACCATT+CGG | - | chr5_3:26522-26541 | None:intergenic | 40.0% |
| GCAACTAAAAGCCACTTCAA+TGG | - | chr5_3:26608-26627 | None:intergenic | 40.0% | |
| !!! | GCATCGTTTTTTGAGTGAAC+CGG | + | chr5_3:26837-26856 | Msa0789640:intron | 40.0% |
| !!! | CATCGTTTTTTGAGTGAACC+GGG | + | chr5_3:26838-26857 | Msa0789640:intron | 40.0% |
| !! | AAGTGTTGATGTTCCTGTGT+TGG | + | chr5_3:25803-25822 | Msa0789640:CDS | 40.0% |
| GTTTGAACATCAGAAAGAGC+TGG | - | chr5_3:27309-27328 | None:intergenic | 40.0% | |
| AACAAACGAACCTGAACAGA+AGG | - | chr5_3:27417-27436 | None:intergenic | 40.0% | |
| ! | TTTGTGTTACTGTTGCGCTT+GGG | - | chr5_3:27884-27903 | None:intergenic | 40.0% |
| ! | ATTTGTGTTACTGTTGCGCT+TGG | - | chr5_3:27885-27904 | None:intergenic | 40.0% |
| AAGCGCAACAGTAACACAAA+TGG | + | chr5_3:27884-27903 | Msa0789640:CDS | 40.0% | |
| ! | AAACATTTTCCAAGCTTCCC+AGG | + | chr5_3:28103-28122 | Msa0789640:CDS | 40.0% |
| ! | GAAATTTTACCTGGGAAGCT+TGG | - | chr5_3:28115-28134 | None:intergenic | 40.0% |
| ! | TTGAAGAGAGGGCCAAGTTT+TGG | + | chr5_3:25113-25132 | Msa0789640:CDS | 45.0% |
| TTAGTTCCAGCAACCAACAC+AGG | - | chr5_3:25185-25204 | None:intergenic | 45.0% | |
| TGGTTGCTGGAACTAAGTCT+TGG | + | chr5_3:25189-25208 | Msa0789640:CDS | 45.0% | |
| TTCAGATAAGGTCCTGAACC+AGG | - | chr5_3:25293-25312 | None:intergenic | 45.0% | |
| GGTTCAGGACCTTATCTGAA+TGG | + | chr5_3:25293-25312 | Msa0789640:CDS | 45.0% | |
| TCCAAGATCCTATGTCTCCA+CGG | + | chr5_3:25757-25776 | Msa0789640:CDS | 45.0% | |
| !! | GATGTTCCTGTGTTGGTTGT+TGG | + | chr5_3:25810-25829 | Msa0789640:CDS | 45.0% |
| TTGGTTCCAACAACCAACAC+AGG | - | chr5_3:25819-25838 | None:intergenic | 45.0% | |
| TGGTTGTTGGAACCAAGTCT+TGG | + | chr5_3:25823-25842 | Msa0789640:CDS | 45.0% | |
| GTTTGAGCATCAGAAAGAGC+TGG | - | chr5_3:25849-25868 | None:intergenic | 45.0% | |
| CAACAGAAGTCAAACGGTTC+TGG | + | chr5_3:26357-26376 | Msa0789640:intron | 45.0% | |
| !!! | GGCTTTTGATAGCGTGATGA+TGG | - | chr5_3:26408-26427 | None:intergenic | 45.0% |
| TCATCACGCTATCAAAAGCC+AGG | + | chr5_3:26408-26427 | Msa0789640:CDS | 45.0% | |
| TATGCAGGAAGAGCAATCTG+AGG | - | chr5_3:26468-26487 | None:intergenic | 45.0% | |
| TGTTCAGGACCTTATCCGAA+TGG | + | chr5_3:26504-26523 | Msa0789640:CDS | 45.0% | |
| TAATCCTAAGCCTGTATCCC+CGG | + | chr5_3:26530-26549 | Msa0789640:CDS | 45.0% | |
| !!! | TTTTTTGAGTGAACCGGGTG+AGG | + | chr5_3:26843-26862 | Msa0789640:intron | 45.0% |
| ! | TAGAAAGCACGGAACGAAGA+AGG | + | chr5_3:26989-27008 | Msa0789640:intron | 45.0% |
| TGTTCCATGCTATGCTCAGA+GGG | - | chr5_3:27072-27091 | None:intergenic | 45.0% | |
| TTGTTCCATGCTATGCTCAG+AGG | - | chr5_3:27073-27092 | None:intergenic | 45.0% | |
| ! | CGGTGTCAAATTTCTCGTGT+TGG | - | chr5_3:27098-27117 | None:intergenic | 45.0% |
| ATTCAAGCTGAGTCAGTACC+AGG | + | chr5_3:27180-27199 | Msa0789640:CDS | 45.0% | |
| !! | GATGTTCCTGTGTTGGTTGT+CGG | + | chr5_3:25810-25829 | Msa0789640:CDS | 45.0% |
| TCACCACACAAACAAAAGCC+AGG | + | chr5_3:27857-27876 | Msa0789640:CDS | 45.0% | |
| ! | TTGTGTTACTGTTGCGCTTG+GGG | - | chr5_3:27883-27902 | None:intergenic | 45.0% |
| GGATTCTCACCATTCGGATA+AGG | - | chr5_3:28019-28038 | None:intergenic | 45.0% | |
| GGCTTAGGATTCTCACCATT+CGG | - | chr5_3:25311-25330 | None:intergenic | 45.0% | |
| GAATCCTAAGCCTGTATCTC+CGG | + | chr5_3:28033-28052 | Msa0789640:CDS | 45.0% | |
| !! | TTAAAAAAATTAAAATTACT+TGG | - | chr5_3:26766-26785 | None:intergenic | 5.0% |
| TATGCTTTCCCACCTGGTTC+AGG | + | chr5_3:25278-25297 | Msa0789640:CDS | 50.0% | |
| GATAAGGTCCTGAACCAGGT+GGG | - | chr5_3:25289-25308 | None:intergenic | 50.0% | |
| AGATAAGGTCCTGAACCAGG+TGG | - | chr5_3:25290-25309 | None:intergenic | 50.0% | |
| TCCTAAGCCTGTATTCCCAG+TGG | + | chr5_3:25322-25341 | Msa0789640:CDS | 50.0% | |
| TCCGTGGAGACATAGGATCT+TGG | - | chr5_3:25761-25780 | None:intergenic | 50.0% | |
| TGTCTGTTCCGTGGAGACAT+AGG | - | chr5_3:25768-25787 | None:intergenic | 50.0% | |
| CCAACACTATGTCTGTTCCG+TGG | - | chr5_3:25777-25796 | None:intergenic | 50.0% | |
| CCACGGAACAGACATAGTGT+TGG | + | chr5_3:25774-25793 | Msa0789640:CDS | 50.0% | |
| AGAAAGAGCTGGCCAAGACT+TGG | - | chr5_3:25838-25857 | None:intergenic | 50.0% | |
| GCAGTTTCTGTGCCTAGTGT+AGG | + | chr5_3:25918-25937 | Msa0789640:CDS | 50.0% | |
| ! | CTGAACAGAAGGAGCTCTAG+GGG | - | chr5_3:25952-25971 | None:intergenic | 50.0% |
| CCTGAACAGAAGGAGCTCTA+GGG | - | chr5_3:25953-25972 | None:intergenic | 50.0% | |
| ACCTGAACAGAAGGAGCTCT+AGG | - | chr5_3:25954-25973 | None:intergenic | 50.0% | |
| ACAGGACGAACATTGCGCTT+GGG | - | chr5_3:26435-26454 | None:intergenic | 50.0% | |
| AAGGTCCTGAACAACCAGGT+GGG | - | chr5_3:26497-26516 | None:intergenic | 50.0% | |
| TAAGGTCCTGAACAACCAGG+TGG | - | chr5_3:26498-26517 | None:intergenic | 50.0% | |
| GGATAAGGTCCTGAACAACC+AGG | - | chr5_3:26501-26520 | None:intergenic | 50.0% | |
| AAGCACGGAACGAAGAAGGA+AGG | + | chr5_3:26993-27012 | Msa0789640:CDS | 50.0% | |
| TGCTATGCTCAGAGGGATCT+TGG | - | chr5_3:27065-27084 | None:intergenic | 50.0% | |
| AGATCCCTCTGAGCATAGCA+TGG | + | chr5_3:27065-27084 | Msa0789640:CDS | 50.0% | |
| ! | TTTGGGGCATGACTTTCTCC+TGG | - | chr5_3:27201-27220 | None:intergenic | 50.0% |
| !! | TTGGTACCGACAACCAACAC+AGG | - | chr5_3:27279-27298 | None:intergenic | 50.0% |
| TGGTTGTCGGTACCAAGTCT+TGG | + | chr5_3:27283-27302 | Msa0789640:CDS | 50.0% | |
| AGAAAGAGCTGGCCAAGACT+TGG | - | chr5_3:25838-25857 | None:intergenic | 50.0% | |
| !! | GCTGTTTCTGTGCCTAGTGT+TGG | + | chr5_3:27372-27391 | Msa0789640:CDS | 50.0% |
| TCCTAGAGCTCCTTCTGTTC+AGG | + | chr5_3:27404-27423 | Msa0789640:CDS | 50.0% | |
| ACCTGAACAGAAGGAGCTCT+AGG | - | chr5_3:25954-25973 | None:intergenic | 50.0% | |
| !! | CGTCTCACTTTTCTGTGTCG+AGG | + | chr5_3:27909-27928 | Msa0789640:CDS | 50.0% |
| TGAGATGGAGGTCGAGTAAC+AGG | - | chr5_3:27956-27975 | None:intergenic | 50.0% | |
| GGAACAGCAATGTGAGATGG+AGG | - | chr5_3:27968-27987 | None:intergenic | 50.0% | |
| GCAGGAACAGCAATGTGAGA+TGG | - | chr5_3:27971-27990 | None:intergenic | 50.0% | |
| TATGCTTTCCCACCTGGTTC+AGG | + | chr5_3:25278-25297 | Msa0789640:CDS | 50.0% | |
| GATAAGGTCCTGAACCAGGT+GGG | - | chr5_3:25289-25308 | None:intergenic | 50.0% | |
| TTCGGATAAGGTCCTGAACC+AGG | - | chr5_3:28007-28026 | None:intergenic | 50.0% | |
| GGTTCAGGACCTTATCCGAA+TGG | + | chr5_3:28007-28026 | Msa0789640:CDS | 50.0% | |
| TTGTCATCAATGGCACGAGC+AGG | - | chr5_3:28085-28104 | None:intergenic | 50.0% | |
| !! | GACGTTCCTGTGTTGGTTGC+TGG | + | chr5_3:25176-25195 | Msa0789640:CDS | 55.0% |
| ! | CCAGGTGGGAAAGCATATGC+AGG | - | chr5_3:25275-25294 | None:intergenic | 55.0% |
| CCTGCATATGCTTTCCCACC+TGG | + | chr5_3:25272-25291 | Msa0789640:CDS | 55.0% | |
| GCCACTGGGAATACAGGCTT+AGG | - | chr5_3:25326-25345 | None:intergenic | 55.0% | |
| CTTGCTGCCACTGGGAATAC+AGG | - | chr5_3:25332-25351 | None:intergenic | 55.0% | |
| TTCCCAGTGGCAGCAAGACA+AGG | + | chr5_3:25335-25354 | Msa0789640:CDS | 55.0% | |
| CACCTTGTCTTGCTGCCACT+GGG | - | chr5_3:25340-25359 | None:intergenic | 55.0% | |
| TCACCTTGTCTTGCTGCCAC+TGG | - | chr5_3:25341-25360 | None:intergenic | 55.0% | |
| TTGAGTAAACCGGGTGAGGC+TGG | + | chr5_3:25578-25597 | Msa0789640:intron | 55.0% | |
| TGAGTAAACCGGGTGAGGCT+GGG | + | chr5_3:25579-25598 | Msa0789640:intron | 55.0% | |
| GGGGTAACGTGACCTACACT+AGG | - | chr5_3:25933-25952 | None:intergenic | 55.0% | |
| CCCTAGAGCTCCTTCTGTTC+AGG | + | chr5_3:25950-25969 | Msa0789640:CDS | 55.0% | |
| CAGGACGAACATTGCGCTTG+GGG | - | chr5_3:26434-26453 | None:intergenic | 55.0% | |
| CACAGGACGAACATTGCGCT+TGG | - | chr5_3:26436-26455 | None:intergenic | 55.0% | |
| CAAGCGCAATGTTCGTCCTG+TGG | + | chr5_3:26434-26453 | Msa0789640:CDS | 55.0% | |
| ! | GGAAGAGCAATCTGAGGTGG+AGG | - | chr5_3:26462-26481 | None:intergenic | 55.0% |
| GCAGGAAGAGCAATCTGAGG+TGG | - | chr5_3:26465-26484 | None:intergenic | 55.0% | |
| ! | CCAGGTGGGAAAGCATATGC+AGG | - | chr5_3:25275-25294 | None:intergenic | 55.0% |
| CCTGCATATGCTTTCCCACC+TGG | + | chr5_3:25272-25291 | Msa0789640:CDS | 55.0% | |
| GCTTTCCCACCTGGTTGTTC+AGG | + | chr5_3:26489-26508 | Msa0789640:CDS | 55.0% | |
| GGAGCAAGGTGACCAACACT+AGG | - | chr5_3:27387-27406 | None:intergenic | 55.0% | |
| !! | CAGAAGGAGCTCTAGGAGCA+AGG | - | chr5_3:27401-27420 | None:intergenic | 55.0% |
| !! | GGGCCTGGCTTTTGTTTGTG+TGG | - | chr5_3:27863-27882 | None:intergenic | 55.0% |
| ACAGGCGGCTGCTGATGATA+AGG | - | chr5_3:27938-27957 | None:intergenic | 55.0% | |
| GATGGAGGTCGAGTAACAGG+CGG | - | chr5_3:27953-27972 | None:intergenic | 55.0% | |
| ! | CCAGGTGGGAAAGCATATGC+AGG | - | chr5_3:25275-25294 | None:intergenic | 55.0% |
| CCTGCATATGCTTTCCCACC+TGG | + | chr5_3:25272-25291 | Msa0789640:CDS | 55.0% | |
| GGATAAGGTCCTGAACCAGG+TGG | - | chr5_3:28004-28023 | None:intergenic | 55.0% | |
| TCCTAAGCCTGTATCTCCGG+TGG | + | chr5_3:28036-28055 | Msa0789640:CDS | 55.0% | |
| AAACCTTGTCCTGCTGCCAC+CGG | - | chr5_3:28055-28074 | None:intergenic | 55.0% | |
| TCATCAATGGCACGAGCAGG+TGG | - | chr5_3:28082-28101 | None:intergenic | 55.0% | |
| GAGTAAACCGGGTGAGGCTG+GGG | + | chr5_3:25580-25599 | Msa0789640:intron | 60.0% | |
| TCTTAGTCCCCAGCCTCACC+CGG | - | chr5_3:25590-25609 | None:intergenic | 60.0% | |
| !! | ATCTGAGGTGGAGGTGCCAC+AGG | - | chr5_3:26453-26472 | None:intergenic | 60.0% |
| TCCTAAGCCTGTATCCCCGG+TGG | + | chr5_3:26533-26552 | Msa0789640:CDS | 60.0% | |
| TCACCTTGTCCTGCTGCCAC+CGG | - | chr5_3:26552-26571 | None:intergenic | 60.0% | |
| TTGAGTGAACCGGGTGAGGC+TGG | + | chr5_3:26847-26866 | Msa0789640:intron | 60.0% | |
| TGAGTGAACCGGGTGAGGCT+GGG | + | chr5_3:26848-26867 | Msa0789640:intron | 60.0% | |
| TCTTAGTCCCCAGCCTCACC+CGG | - | chr5_3:25590-25609 | None:intergenic | 60.0% | |
| TTACTGTTGCGCTTGGGGCC+TGG | - | chr5_3:27878-27897 | None:intergenic | 60.0% | |
| GCCACCGGAGATACAGGCTT+AGG | - | chr5_3:28040-28059 | None:intergenic | 60.0% | |
| CGAACATTGCGCTTGGGGCC+TGG | - | chr5_3:26429-26448 | None:intergenic | 65.0% | |
| GCCACCGGGGATACAGGCTT+AGG | - | chr5_3:26537-26556 | None:intergenic | 65.0% | |
| ACCTTGTCCTGCTGCCACCG+GGG | - | chr5_3:26550-26569 | None:intergenic | 65.0% | |
| CACCTTGTCCTGCTGCCACC+GGG | - | chr5_3:26551-26570 | None:intergenic | 65.0% | |
| GAGTGAACCGGGTGAGGCTG+GGG | + | chr5_3:26849-26868 | Msa0789640:intron | 65.0% | |
| CCTGCTGCCACCGGAGATAC+AGG | - | chr5_3:28046-28065 | None:intergenic | 65.0% | |
| CCTGTATCTCCGGTGGCAGC+AGG | + | chr5_3:28043-28062 | Msa0789640:CDS | 65.0% | |
| TCTCCGGTGGCAGCAGGACA+AGG | + | chr5_3:28049-28068 | Msa0789640:CDS | 65.0% | |
| CCTGCTGCCACCGGGGATAC+AGG | - | chr5_3:26543-26562 | None:intergenic | 70.0% | |
| CCTGTATCCCCGGTGGCAGC+AGG | + | chr5_3:26540-26559 | Msa0789640:CDS | 70.0% | |
| TCCCCGGTGGCAGCAGGACA+AGG | + | chr5_3:26546-26565 | Msa0789640:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 25062 | 28141 | 25062 | ID=Msa0789640;Name=Msa0789640 |
| chr5_3 | mRNA | 25062 | 28141 | 25062 | ID=Msa0789640-mRNA-1;Parent=Msa0789640;Name=Msa0789640-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0.5|0.2|1|1|1|5|0|504 |
| chr5_3 | exon | 25062 | 25356 | 25062 | ID=Msa0789640-mRNA-1:exon:0;Parent=Msa0789640-mRNA-1 |
| chr5_3 | exon | 25721 | 25971 | 25721 | ID=Msa0789640-mRNA-1:exon:1;Parent=Msa0789640-mRNA-1 |
| chr5_3 | exon | 26363 | 26567 | 26363 | ID=Msa0789640-mRNA-1:exon:2;Parent=Msa0789640-mRNA-1 |
| chr5_3 | exon | 26992 | 27425 | 26992 | ID=Msa0789640-mRNA-1:exon:3;Parent=Msa0789640-mRNA-1 |
| chr5_3 | exon | 27812 | 28141 | 27812 | ID=Msa0789640-mRNA-1:exon:4;Parent=Msa0789640-mRNA-1 |
| chr5_3 | CDS | 25062 | 25356 | 25062 | ID=Msa0789640-mRNA-1:cds;Parent=Msa0789640-mRNA-1 |
| chr5_3 | CDS | 25721 | 25971 | 25721 | ID=Msa0789640-mRNA-1:cds;Parent=Msa0789640-mRNA-1 |
| chr5_3 | CDS | 26363 | 26567 | 26363 | ID=Msa0789640-mRNA-1:cds;Parent=Msa0789640-mRNA-1 |
| chr5_3 | CDS | 26992 | 27425 | 26992 | ID=Msa0789640-mRNA-1:cds;Parent=Msa0789640-mRNA-1 |
| chr5_3 | CDS | 27812 | 28141 | 27812 | ID=Msa0789640-mRNA-1:cds;Parent=Msa0789640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
