AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0557140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557140 MtrunA17_Chr4g0046211 100.000 146 0 0 1 146 1 146 1.44e-108 305
Msa0557140 MtrunA17_Chr2g0325101 91.608 143 12 0 1 143 1 143 1.66e-97 278
Msa0557140 MtrunA17_Chr8g0371501 88.811 143 16 0 1 143 1 143 1.37e-95 274
Msa0557140 MtrunA17_Chr4g0037021 89.510 143 15 0 1 143 1 143 3.67e-95 273
Msa0557140 MtrunA17_Chr5g0405791 88.112 143 17 0 1 143 1 143 1.18e-93 269
Msa0557140 MtrunA17_Chr3g0117931 77.465 142 32 0 2 143 4 145 4.53e-84 245
Msa0557140 MtrunA17_Chr6g0486041 78.322 143 31 0 1 143 1 143 1.37e-83 244
Msa0557140 MtrunA17_Chr1g0212521 35.484 124 77 3 6 127 15 137 3.64e-23 90.5
Msa0557140 MtrunA17_Chr4g0030911 35.484 124 77 3 6 127 15 137 4.10e-23 90.1
Msa0557140 MtrunA17_Chr1g0182321 35.484 124 77 3 6 127 15 137 6.61e-23 89.7
Msa0557140 MtrunA17_Chr1g0182301 35.484 124 77 3 6 127 15 137 7.59e-23 89.7
Msa0557140 MtrunA17_Chr7g0263071 34.677 124 78 3 6 127 15 137 1.88e-22 88.6
Msa0557140 MtrunA17_Chr1g0199331 36.434 129 76 5 7 131 32 158 2.16e-22 88.2
Msa0557140 MtrunA17_Chr4g0055651 35.772 123 76 3 6 126 8 129 2.65e-22 87.8
Msa0557140 MtrunA17_Chr7g0250531 34.091 132 84 3 6 135 8 138 7.95e-22 86.7
Msa0557140 MtrunA17_Chr2g0319951 37.500 120 72 3 6 123 13 131 8.93e-22 87.0
Msa0557140 MtrunA17_Chr8g0335471 36.134 119 73 3 6 122 8 125 1.93e-21 85.5
Msa0557140 MtrunA17_Chr7g0275991 35.938 128 79 3 8 133 22 148 2.48e-21 85.9
Msa0557140 MtrunA17_Chr2g0276941 33.793 145 86 4 6 141 15 158 2.92e-21 85.5
Msa0557140 MtrunA17_Chr1g0174281 38.462 117 69 3 8 122 17 132 4.73e-21 85.1
Msa0557140 MtrunA17_Chr8g0381841 37.190 121 73 3 8 126 19 138 5.34e-21 85.1
Msa0557140 MtrunA17_Chr7g0265001 36.752 117 71 2 8 121 18 134 5.94e-21 84.7
Msa0557140 MtrunA17_Chr2g0276931 34.146 123 78 3 6 126 9 130 7.68e-21 84.0
Msa0557140 MtrunA17_Chr3g0112681 37.815 119 71 3 6 122 12 129 8.31e-21 84.3
Msa0557140 MtrunA17_Chr8g0346421 38.655 119 70 3 8 124 28 145 1.03e-20 84.3
Msa0557140 MtrunA17_Chr2g0315551 37.500 120 72 3 6 123 13 131 1.13e-20 84.0
Msa0557140 MtrunA17_Chr4g0040781 38.333 120 71 3 6 123 13 131 1.13e-20 84.0
Msa0557140 MtrunA17_Chr2g0283131 37.500 120 72 3 6 123 13 131 1.16e-20 84.0
Msa0557140 MtrunA17_Chr7g0231131 37.607 117 70 3 8 122 17 132 1.29e-20 84.0
Msa0557140 MtrunA17_Chr4g0046261 37.500 120 72 3 6 123 13 131 1.39e-20 83.6
Msa0557140 MtrunA17_Chr4g0032201 33.103 145 87 4 6 141 12 155 2.05e-20 83.2
Msa0557140 MtrunA17_Chr3g0123821 35.537 121 75 3 8 126 18 137 3.42e-20 82.8
Msa0557140 MtrunA17_Chr3g0123971 36.154 130 80 3 8 135 11 139 1.93e-19 80.5
Msa0557140 MtrunA17_Chr8g0382221 36.154 130 80 3 8 135 11 139 2.28e-19 80.5
Msa0557140 MtrunA17_Chr3g0109721 34.426 122 77 3 8 127 12 132 3.49e-19 79.7
Msa0557140 MtrunA17_Chr2g0290891 33.065 124 80 3 1 122 1 123 5.79e-19 79.3
Msa0557140 MtrunA17_Chr2g0327911 32.800 125 80 3 6 127 15 138 5.94e-19 79.3
Msa0557140 MtrunA17_Chr6g0458081 33.065 124 80 3 1 122 1 123 6.71e-19 79.3
Msa0557140 MtrunA17_Chr8g0384311 33.065 124 79 3 6 126 13 135 6.76e-19 79.0
Msa0557140 MtrunA17_Chr5g0400131 36.154 130 80 3 8 135 11 139 6.78e-19 79.0
Msa0557140 MtrunA17_Chr4g0055081 35.385 130 81 3 8 135 11 139 1.74e-18 78.2
Msa0557140 MtrunA17_Chr8g0390561 33.607 122 78 3 8 127 11 131 2.31e-18 77.4
Msa0557140 MtrunA17_Chr5g0433561 32.787 122 79 3 8 127 12 132 2.72e-18 77.4
Msa0557140 MtrunA17_Chr8g0392931 34.454 119 75 3 6 122 14 131 7.73e-18 76.6
Msa0557140 MtrunA17_Chr3g0130271 30.769 130 86 3 8 134 14 142 8.43e-18 76.3
Msa0557140 MtrunA17_Chr7g0234201 33.333 132 85 3 6 135 13 143 8.77e-18 76.3
Msa0557140 MtrunA17_Chr1g0159481 32.258 124 80 3 6 126 17 139 1.32e-17 75.9
Msa0557140 MtrunA17_Chr1g0180291 33.607 122 77 3 8 126 16 136 2.32e-17 75.1
Msa0557140 MtrunA17_Chr8g0351861 35.294 119 74 3 6 122 16 133 2.48e-17 75.5
Msa0557140 MtrunA17_Chr1g0189361 33.065 124 80 3 6 127 14 136 8.83e-17 73.9
Msa0557140 MtrunA17_Chr2g0325091 36.667 120 73 3 6 123 11 129 1.11e-16 73.6
Msa0557140 MtrunA17_Chr8g0349711 31.452 124 82 3 1 122 1 123 1.25e-16 73.2
Msa0557140 MtrunA17_Chr6g0482721 33.065 124 80 3 6 127 12 134 2.61e-16 72.4
Msa0557140 MtrunA17_Chr8g0349681 33.065 124 80 3 1 122 379 501 3.48e-16 74.3
Msa0557140 MtrunA17_Chr8g0349681 30.645 124 83 3 1 122 8 130 6.20e-15 70.5
Msa0557140 MtrunA17_Chr8g0349681 29.032 124 85 3 1 122 170 292 4.15e-14 68.2
Msa0557140 MtrunA17_Chr2g0331691 34.146 123 74 4 6 122 10 131 1.53e-15 70.5
Msa0557140 MtrunA17_Chr4g0034871 32.520 123 76 3 6 122 8 129 1.78e-15 70.1
Msa0557140 MtrunA17_Chr1g0201121 33.077 130 78 5 1 122 1 129 3.15e-15 69.3
Msa0557140 MtrunA17_Chr7g0214241 31.008 129 86 3 6 132 15 142 3.93e-15 69.3
Msa0557140 MtrunA17_Chr4g0004661 33.333 123 75 4 6 122 64 185 9.21e-15 68.9
Msa0557140 MtrunA17_Chr6g0466301 31.707 123 77 4 6 122 8 129 1.44e-14 67.8
Msa0557140 MtrunA17_Chr6g0465491 31.707 123 77 4 6 122 8 129 1.44e-14 67.8
Msa0557140 MtrunA17_Chr8g0383261 29.861 144 86 5 6 143 12 146 2.04e-14 67.4
Msa0557140 MtrunA17_Chr3g0138121 30.252 119 81 2 7 124 14 131 5.73e-14 66.2
Msa0557140 MtrunA17_Chr3g0138111 30.252 119 81 2 7 124 14 131 6.49e-14 66.2
Msa0557140 MtrunA17_Chr3g0138101 30.252 119 81 2 7 124 14 131 6.69e-14 66.2
Msa0557140 MtrunA17_Chr1g0197331 30.894 123 81 3 8 126 17 139 3.50e-13 63.9
Msa0557140 MtrunA17_Chr7g0259771 27.612 134 70 2 7 127 9 128 5.34e-11 59.3
Msa0557140 MtrunA17_Chr1g0191811 30.328 122 82 3 7 127 17 136 7.49e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557140 AT5G45970.1 90.909 143 13 0 1 143 1 143 5.80e-96 275
Msa0557140 AT3G51300.1 89.510 143 15 0 1 143 1 143 1.42e-95 274
Msa0557140 AT2G17800.2 89.510 143 15 0 1 143 1 143 2.51e-95 273
Msa0557140 AT2G17800.1 89.510 143 15 0 1 143 1 143 2.51e-95 273
Msa0557140 AT1G75840.1 89.510 143 15 0 1 143 1 143 2.89e-95 273
Msa0557140 AT4G35950.1 88.811 143 16 0 1 143 1 143 1.22e-94 272
Msa0557140 AT1G20090.1 90.714 140 13 0 4 143 3 142 3.44e-94 270
Msa0557140 AT4G35020.1 86.014 143 20 0 1 143 1 143 4.79e-94 270
Msa0557140 AT4G35020.2 86.014 143 20 0 1 143 1 143 4.79e-94 270
Msa0557140 AT4G35020.3 86.014 143 20 0 1 143 1 143 4.79e-94 270
Msa0557140 AT5G62880.2 78.873 142 30 0 2 143 4 145 1.58e-85 248
Msa0557140 AT5G62880.1 78.873 142 30 0 2 143 4 145 4.01e-85 248
Msa0557140 AT3G48040.2 77.465 142 32 0 2 143 4 145 1.54e-83 243
Msa0557140 AT3G48040.1 77.465 142 32 0 2 143 4 145 2.46e-83 243
Msa0557140 AT4G28950.1 76.027 146 35 0 1 146 1 146 1.06e-81 239
Msa0557140 AT2G44690.1 82.707 133 23 0 6 138 18 150 1.89e-80 236
Msa0557140 AT4G35020.4 89.167 120 13 0 1 120 1 120 1.25e-79 232
Msa0557140 AT4G35020.5 89.167 120 13 0 1 120 1 120 1.25e-79 232
Msa0557140 AT3G51290.2 90.000 110 11 0 34 143 635 744 1.43e-67 218
Msa0557140 AT5G59840.1 34.677 124 78 3 6 127 15 137 1.41e-22 89.4
Msa0557140 AT3G46060.2 34.677 124 78 3 6 127 15 137 1.46e-22 89.4
Msa0557140 AT3G46060.3 34.677 124 78 3 6 127 15 137 1.46e-22 89.4
Msa0557140 AT3G46060.1 34.677 124 78 3 6 127 15 137 1.46e-22 89.4
Msa0557140 AT1G16920.1 39.167 120 70 3 6 123 13 131 1.64e-22 89.0
Msa0557140 AT3G54840.2 35.484 124 76 3 7 127 34 156 2.59e-22 88.2
Msa0557140 AT1G09630.1 35.172 145 84 4 6 141 12 155 3.13e-22 88.6
Msa0557140 AT3G54840.1 35.484 124 76 3 7 127 34 156 3.78e-22 87.8
Msa0557140 AT1G02130.1 34.959 123 77 3 6 126 8 129 4.16e-22 87.8
Msa0557140 AT3G53610.2 33.871 124 79 3 6 127 15 137 9.08e-22 87.0
Msa0557140 AT3G53610.3 33.871 124 79 3 6 127 15 137 9.08e-22 87.0
Msa0557140 AT3G53610.1 33.871 124 79 3 6 127 15 137 9.08e-22 87.0
Msa0557140 AT3G54840.3 35.246 122 75 3 9 127 2 122 1.30e-21 85.5
Msa0557140 AT3G12160.1 39.316 117 68 3 8 122 17 132 1.32e-21 87.0
Msa0557140 AT1G06400.1 38.333 120 71 3 6 123 13 131 1.70e-21 86.7
Msa0557140 AT4G19640.2 36.066 122 75 3 8 127 12 132 3.15e-21 84.0
Msa0557140 AT4G35860.1 33.099 142 84 4 1 132 1 141 4.59e-21 85.1
Msa0557140 AT1G73640.1 37.984 129 77 3 6 132 13 140 4.63e-21 85.9
Msa0557140 AT4G18430.1 40.000 120 69 3 6 123 13 131 6.06e-21 85.1
Msa0557140 AT5G45750.1 35.714 140 79 4 6 143 13 143 7.59e-21 84.7
Msa0557140 AT3G15060.1 38.983 118 69 3 8 123 15 131 7.74e-21 84.7
Msa0557140 AT5G45130.1 36.066 122 75 3 8 127 12 132 8.23e-21 84.3
Msa0557140 AT4G19640.3 36.066 122 75 3 8 127 12 132 8.42e-21 84.0
Msa0557140 AT1G18200.1 37.903 124 74 3 6 127 13 135 1.17e-20 84.7
Msa0557140 AT4G19640.1 36.066 122 75 3 8 127 12 132 1.22e-20 84.0
Msa0557140 AT4G17530.1 34.959 123 77 3 6 126 8 129 1.84e-20 83.6
Msa0557140 AT4G18800.1 35.000 140 80 4 6 143 13 143 1.96e-20 83.6
Msa0557140 AT5G47200.1 34.959 123 77 3 6 126 8 129 3.31e-20 82.8
Msa0557140 AT5G45130.2 35.833 120 74 3 10 127 22 140 3.85e-20 82.8
Msa0557140 AT2G44610.1 36.923 130 79 3 8 135 11 139 6.61e-20 82.0
Msa0557140 AT5G60860.1 37.500 120 72 3 6 123 13 131 7.00e-20 82.4
Msa0557140 AT1G28550.1 38.333 120 71 3 6 123 13 131 1.07e-19 81.6
Msa0557140 AT1G07410.1 36.975 119 72 3 6 122 12 129 1.34e-19 81.6
Msa0557140 AT5G10260.1 37.795 127 76 3 8 132 11 136 1.36e-19 81.3
Msa0557140 AT2G22290.1 38.583 127 75 3 8 132 11 136 1.39e-19 81.3
Msa0557140 AT5G59150.1 36.975 119 72 3 6 122 12 129 1.77e-19 81.3
Msa0557140 AT5G47960.1 35.043 117 73 3 8 122 17 132 1.84e-19 81.3
Msa0557140 AT4G39990.1 33.884 121 77 3 8 126 19 138 2.06e-19 81.3
Msa0557140 AT5G65270.1 36.364 121 74 3 8 126 19 138 2.25e-19 81.3
Msa0557140 AT3G11730.1 32.520 123 80 3 6 126 8 129 2.45e-19 80.5
Msa0557140 AT2G33870.1 38.655 119 70 3 6 122 13 130 2.67e-19 80.9
Msa0557140 AT4G17170.1 30.986 142 87 4 1 132 1 141 2.78e-19 80.5
Msa0557140 AT4G17160.1 32.031 128 84 3 1 126 1 127 7.21e-19 79.3
Msa0557140 AT4G39890.1 37.121 132 78 4 4 132 8 137 9.69e-19 79.3
Msa0557140 AT3G46830.1 31.724 145 89 4 6 141 12 155 1.09e-18 79.0
Msa0557140 AT3G46830.2 31.724 145 89 4 6 141 12 155 1.09e-18 79.0
Msa0557140 AT1G43890.3 33.871 124 78 3 6 126 13 135 2.89e-18 77.8
Msa0557140 AT1G43890.1 33.871 124 78 3 6 126 13 135 2.89e-18 77.8
Msa0557140 AT1G43890.2 33.871 124 78 3 6 126 13 135 2.89e-18 77.8
Msa0557140 AT5G64990.1 38.583 127 75 3 8 132 9 134 6.90e-18 76.6
Msa0557140 AT1G01200.1 35.897 117 72 3 8 122 30 145 7.00e-18 77.4
Msa0557140 AT5G03520.1 35.484 124 77 3 6 127 15 137 9.37e-18 76.6
Msa0557140 AT2G43130.1 34.167 120 76 3 6 123 12 130 2.91e-17 75.5
Msa0557140 AT2G31680.1 31.818 132 87 3 6 135 12 142 4.76e-17 74.7
Msa0557140 AT3G07410.1 32.576 132 86 3 6 135 12 142 4.91e-17 74.7
Msa0557140 AT1G05810.1 31.061 132 88 3 6 135 12 142 4.94e-17 74.7
Msa0557140 AT1G05810.2 31.061 132 88 3 6 135 58 188 5.13e-17 75.5
Msa0557140 AT3G18820.1 31.944 144 91 4 6 143 8 150 5.74e-17 74.3
Msa0557140 AT3G09900.1 34.677 124 78 3 6 127 15 137 6.35e-17 74.3
Msa0557140 AT5G03530.2 32.787 122 78 3 8 126 15 135 1.28e-16 73.6
Msa0557140 AT5G03530.1 32.787 122 78 3 8 126 15 135 1.28e-16 73.6
Msa0557140 AT1G22740.1 34.615 130 76 5 1 122 1 129 1.32e-16 73.6
Msa0557140 AT5G47520.1 33.058 121 78 3 6 124 14 133 8.02e-16 71.6
Msa0557140 AT5G55080.1 32.759 116 76 2 8 122 15 129 9.04e-16 71.6
Msa0557140 AT2G21880.1 33.333 123 75 4 6 122 9 130 2.04e-15 70.5
Msa0557140 AT1G49300.2 30.137 146 86 5 6 145 8 143 2.94e-15 69.7
Msa0557140 AT1G49300.1 30.137 146 86 5 6 145 8 143 2.94e-15 69.7
Msa0557140 AT1G52280.1 30.464 151 96 5 1 143 1 150 5.44e-15 69.3
Msa0557140 AT4G09720.1 31.538 130 80 5 1 122 1 129 2.11e-14 67.8
Msa0557140 AT3G16100.1 30.464 151 96 5 1 143 1 150 2.11e-14 67.8
Msa0557140 AT4G09720.4 30.370 135 80 4 1 122 1 134 5.41e-14 66.6
Msa0557140 AT5G20020.1 30.252 119 81 2 7 124 14 131 6.37e-14 66.6
Msa0557140 AT5G55190.1 30.252 119 81 2 7 124 14 131 7.28e-14 66.2
Msa0557140 AT5G20010.1 30.252 119 81 2 7 124 14 131 7.59e-14 66.2
Msa0557140 AT4G09720.3 29.078 141 80 4 1 122 1 140 4.12e-13 64.3
Msa0557140 AT4G35860.2 33.684 95 53 3 47 132 2 95 6.26e-13 62.8
Msa0557140 AT5G27540.1 25.203 123 91 1 3 125 14 135 9.75e-13 64.7
Msa0557140 AT5G27540.2 25.203 123 91 1 3 125 14 135 9.75e-13 64.7
Msa0557140 AT5G59150.2 38.961 77 45 2 47 122 3 78 1.33e-12 62.0
Msa0557140 AT3G63150.1 30.579 121 81 3 7 126 15 133 1.62e-12 63.9
Msa0557140 AT5G03520.2 36.585 82 50 2 47 127 47 127 7.09e-12 60.8
Msa0557140 AT5G39620.1 28.671 143 95 4 7 143 6 147 1.66e-11 59.7
Msa0557140 AT3G09910.5 30.081 123 82 3 8 127 15 136 3.99e-11 58.5
Msa0557140 AT3G09910.4 30.081 123 82 3 8 127 15 136 3.99e-11 58.5
Msa0557140 AT3G09910.3 30.081 123 82 3 8 127 15 136 4.68e-11 58.5
Msa0557140 AT3G09910.1 30.081 123 82 3 8 127 15 136 4.68e-11 58.5
Msa0557140 AT3G09910.2 30.081 123 82 3 8 127 15 136 4.68e-11 58.5

Find 57 sgRNAs with CRISPR-Local

Find 690 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGTACTTTCCTCTAATT+TGG 0.070213 4_1:+55457602 Msa0557140:three_prime_UTR
ACTCATATTTGAAGTTAAAT+TGG 0.165649 4_1:+55457835 Msa0557140:three_prime_UTR
GTACAGTTAATCTTGGTTTA+TGG 0.192232 4_1:+55456575 Msa0557140:CDS
GTCTTGCGTGGTTTCTTCTT+TGG 0.222979 4_1:-55457575 None:intergenic
AAACAAAACATTGAAGCTTA+TGG 0.276228 4_1:-55457688 None:intergenic
AATCAATGATTGTGGTAAAC+AGG 0.279484 4_1:+55457282 Msa0557140:three_prime_UTR
CATGTACTTTCCTCTAATTT+GGG 0.283343 4_1:+55457603 Msa0557140:three_prime_UTR
GTGTTGGTGGGAACAAAATT+AGG 0.288814 4_1:+55456975 Msa0557140:CDS
CGTGGTTTCTTCTTTGGCTT+TGG 0.304527 4_1:-55457569 None:intergenic
ATATTTATGAAGAAAGTTAA+AGG 0.313830 4_1:-55456245 None:intergenic
TTATGAGAACATTTCCAAAA+AGG 0.315063 4_1:+55456822 Msa0557140:CDS
TTGTACATGCAAAATAATAT+TGG 0.317076 4_1:-55457245 None:intergenic
TACAGTTAATCTTGGTTTAT+GGG 0.333419 4_1:+55456576 Msa0557140:CDS
TTTCACACACCCCAAATTAG+AGG 0.338522 4_1:-55457613 None:intergenic
AAGAAGATTACAATAGATTA+AGG 0.345982 4_1:+55456737 Msa0557140:CDS
TTTGTTCCCACCAACACAAT+AGG 0.367762 4_1:-55456969 None:intergenic
CTCATATTTGAAGTTAAATT+GGG 0.371027 4_1:+55457836 Msa0557140:three_prime_UTR
ACCAACACAATAGGCACATT+TGG 0.389878 4_1:-55456960 None:intergenic
GATGGTAGTACAGTTAATCT+TGG 0.405802 4_1:+55456568 Msa0557140:CDS
ATATAAAACTGAAAATGAAA+TGG 0.409851 4_1:-55457652 None:intergenic
GACTTACTCCTAAGTAGTTA+AGG 0.412422 4_1:+55456204 Msa0557140:five_prime_UTR
GGTTTCTTCTTTGGCTTTGG+TGG 0.414729 4_1:-55457566 None:intergenic
GAAGAATTAAAGAAAATGAT+TGG 0.437849 4_1:+55457307 Msa0557140:three_prime_UTR
GTTGTTATTTGTGTCGCTCC+AGG 0.479248 4_1:-55457167 None:intergenic
AGAATATCATGAAATACAAA+AGG 0.500549 4_1:-55463216 None:intergenic
TTTATCAAGTGTGTAACAGT+AGG 0.504702 4_1:+55456349 Msa0557140:CDS
CTTGGTTTATGGGATACTGC+AGG 0.516373 4_1:+55456586 Msa0557140:CDS
TTAAATTTAATCAATGATTG+TGG 0.519399 4_1:+55457274 Msa0557140:three_prime_UTR
CTGAAATTGTCAAACACAGT+TGG 0.527759 4_1:-55456529 None:intergenic
TTATGAAGAAAGTTAAAGGA+GGG 0.529481 4_1:-55456241 None:intergenic
TAAGCAAGCCTTAACTACTT+AGG 0.535499 4_1:-55456212 None:intergenic
ATGAAGAAAGTTAAAGGAGG+GGG 0.544104 4_1:-55456239 None:intergenic
TTATCAAGTGTGTAACAGTA+GGG 0.549282 4_1:+55456350 Msa0557140:CDS
TTAGAAACATACTGTGGGAA+AGG 0.550222 4_1:-55456422 None:intergenic
AAATGTGCCTATTGTGTTGG+TGG 0.550285 4_1:+55456962 Msa0557140:CDS
ACAGTAGGGGATGGTGCTGT+AGG 0.551321 4_1:+55456364 Msa0557140:CDS
ATGTACTTTCCTCTAATTTG+GGG 0.557134 4_1:+55457604 Msa0557140:three_prime_UTR
TTTATGAAGAAAGTTAAAGG+AGG 0.558158 4_1:-55456242 None:intergenic
AGAAGAAACCACGCAAGACA+AGG 0.561090 4_1:+55457579 Msa0557140:three_prime_UTR
TCCAAATGTGCCTATTGTGT+TGG 0.565001 4_1:+55456959 Msa0557140:CDS
AGTGCTAATGTGGTGGTGGA+TGG 0.569076 4_1:+55456550 Msa0557140:CDS
TCAGCTCCTCTGTAACTCAA+TGG 0.570878 4_1:-55456760 None:intergenic
GACACAAATAACAACTGCTA+AGG 0.578938 4_1:+55457175 Msa0557140:CDS
GTACATGTCCTTGTCTTGCG+TGG 0.584257 4_1:-55457587 None:intergenic
GAAGAAGAATGAGTACAGCT+AGG 0.584635 4_1:+55456326 Msa0557140:exon
ATCAATGATTGTGGTAAACA+GGG 0.587588 4_1:+55457283 Msa0557140:three_prime_UTR
TTTCAGTGCTAATGTGGTGG+TGG 0.600699 4_1:+55456546 Msa0557140:CDS
GTGCAGCTCTAAAACACAGC+AGG 0.601225 4_1:+55457348 Msa0557140:three_prime_UTR
TTAAGGCCATTGAGTTACAG+AGG 0.604328 4_1:+55456754 Msa0557140:CDS
TATGAAGAAAGTTAAAGGAG+GGG 0.612862 4_1:-55456240 None:intergenic
AATGTGCCTATTGTGTTGGT+GGG 0.621966 4_1:+55456963 Msa0557140:CDS
AAACTGAAAATGAAATGGAG+TGG 0.623149 4_1:-55457647 None:intergenic
TGACAATTTCAGTGCTAATG+TGG 0.644564 4_1:+55456540 Msa0557140:CDS
AAGTGTGTAACAGTAGGGGA+TGG 0.644945 4_1:+55456355 Msa0557140:CDS
CAATTTCAGTGCTAATGTGG+TGG 0.655668 4_1:+55456543 Msa0557140:CDS
TATCAAGTGTGTAACAGTAG+GGG 0.658823 4_1:+55456351 Msa0557140:CDS
CTGCAATAAAGATTGCATTG+AGG 0.683742 4_1:+55457543 Msa0557140:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTGATGTTATTTAT+TGG + chr4_1:55456690-55456709 Msa0557140:intron 10.0%
!! ATATTTATGAAGAAAGTTAA+AGG - chr4_1:55456248-55456267 None:intergenic 15.0%
!! TCTTATATATCTAACTTATA+AGG - chr4_1:55456868-55456887 None:intergenic 15.0%
!! TTAAATTTAATCAATGATTG+TGG + chr4_1:55457274-55457293 Msa0557140:three_prime_UTR 15.0%
!! ATATAAAACTGAAAATGAAA+TGG - chr4_1:55457655-55457674 None:intergenic 15.0%
!!! TCTTTTGATTTTTCTATGAT+AGG + chr4_1:55456498-55456517 Msa0557140:intron 20.0%
!! AAGAAGATTACAATAGATTA+AGG + chr4_1:55456737-55456756 Msa0557140:CDS 20.0%
!! TTGTACATGCAAAATAATAT+TGG - chr4_1:55457248-55457267 None:intergenic 20.0%
!! GAAGAATTAAAGAAAATGAT+TGG + chr4_1:55457307-55457326 Msa0557140:three_prime_UTR 20.0%
!! TTCAAAAAATACTTCACAAT+TGG - chr4_1:55457467-55457486 None:intergenic 20.0%
!!! ACTCATATTTGAAGTTAAAT+TGG + chr4_1:55457835-55457854 Msa0557140:three_prime_UTR 20.0%
!!! CTCATATTTGAAGTTAAATT+GGG + chr4_1:55457836-55457855 Msa0557140:three_prime_UTR 20.0%
!! TTCAGAAAATGAAGAAAATA+CGG - chr4_1:55458239-55458258 None:intergenic 20.0%
!!! TTACTTGTTAAAAAGAAAGA+CGG - chr4_1:55460851-55460870 None:intergenic 20.0%
!! TATTATAGTGGTTGAAAAAT+TGG + chr4_1:55462469-55462488 Msa0557140:intron 20.0%
!! TTCAGAAAATGAAGAAAATA+CGG - chr4_1:55458239-55458258 None:intergenic 20.0%
!! AGAATATCATGAAATACAAA+AGG - chr4_1:55463219-55463238 None:intergenic 20.0%
! TTATGAAGAAAGTTAAAGGA+GGG - chr4_1:55456244-55456263 None:intergenic 25.0%
! TTTATGAAGAAAGTTAAAGG+AGG - chr4_1:55456245-55456264 None:intergenic 25.0%
!! CTTCTTCTTTTTCTTAACTT+AGG - chr4_1:55456307-55456326 None:intergenic 25.0%
! ACTATTTAGAAACATACTGT+GGG - chr4_1:55456430-55456449 None:intergenic 25.0%
! AACTATTTAGAAACATACTG+TGG - chr4_1:55456431-55456450 None:intergenic 25.0%
! TACAGTTAATCTTGGTTTAT+GGG + chr4_1:55456576-55456595 Msa0557140:CDS 25.0%
! AAAAGTAAAACATAGAGCTT+TGG - chr4_1:55456624-55456643 None:intergenic 25.0%
!!! ATCAATGTAAAGTTTTGATG+AGG + chr4_1:55456652-55456671 Msa0557140:intron 25.0%
! TTATGAGAACATTTCCAAAA+AGG + chr4_1:55456822-55456841 Msa0557140:CDS 25.0%
!! ATAGAGGAAAAAAACCTTTT+TGG - chr4_1:55456839-55456858 None:intergenic 25.0%
! ACTTATAAGGTAATGTATAG+AGG - chr4_1:55456855-55456874 None:intergenic 25.0%
! TCATTACTGTCAACTTATAA+TGG - chr4_1:55457041-55457060 None:intergenic 25.0%
!!! AAATTACAGCACTTCTTTTT+TGG + chr4_1:55457376-55457395 Msa0557140:intron 25.0%
! AAACAAAACATTGAAGCTTA+TGG - chr4_1:55457691-55457710 None:intergenic 25.0%
! AAAAAGAGTCTTAAGTGTTA+TGG + chr4_1:55457738-55457757 Msa0557140:three_prime_UTR 25.0%
!!! TTTTTTCTTTTTCTGTGTCT+AGG + chr4_1:55457793-55457812 Msa0557140:three_prime_UTR 25.0%
! TATTGAATTCCCAAAGAAAA+AGG + chr4_1:55457882-55457901 Msa0557140:intron 25.0%
! ATTGAATTCCCAAAGAAAAA+GGG + chr4_1:55457883-55457902 Msa0557140:intron 25.0%
! ATCTTAATCTGATGATCAAT+AGG - chr4_1:55458048-55458067 None:intergenic 25.0%
! TCAGAAAATGAAGAAAATAC+GGG - chr4_1:55458238-55458257 None:intergenic 25.0%
! TGATGAGTTATACCAAAATT+CGG + chr4_1:55458924-55458943 Msa0557140:intron 25.0%
!! ATCAAATCTTTTATACACCA+GGG - chr4_1:55459800-55459819 None:intergenic 25.0%
!! TATCAAATCTTTTATACACC+AGG - chr4_1:55459801-55459820 None:intergenic 25.0%
!!! TTTTCTTCGCAAATTTGTTT+TGG - chr4_1:55460543-55460562 None:intergenic 25.0%
! AAAACAAATTTGCGAAGAAA+AGG + chr4_1:55460542-55460561 Msa0557140:intron 25.0%
!! TTCTTTTTAACAAGTAACAC+AGG + chr4_1:55460854-55460873 Msa0557140:intron 25.0%
!! TCTTTTTAACAAGTAACACA+GGG + chr4_1:55460855-55460874 Msa0557140:intron 25.0%
!!! TCAATGCAGTTTTATCATAA+TGG - chr4_1:55461319-55461338 None:intergenic 25.0%
! TTATGATAAAACTGCATTGA+AGG + chr4_1:55461319-55461338 Msa0557140:intron 25.0%
! GGAAATCAACAACAAAAATT+GGG + chr4_1:55461840-55461859 Msa0557140:intron 25.0%
! GAAATCAACAACAAAAATTG+GGG + chr4_1:55461841-55461860 Msa0557140:intron 25.0%
!! TTTTATCAGTTCTCTAACAT+TGG - chr4_1:55462805-55462824 None:intergenic 25.0%
! TATTGAATTCCCAAAGAAAA+AGG + chr4_1:55457882-55457901 Msa0557140:intron 25.0%
! ATTGAATTCCCAAAGAAAAA+GGG + chr4_1:55457883-55457902 Msa0557140:intron 25.0%
! ATCTTAATCTGATGATCAAT+AGG - chr4_1:55458048-55458067 None:intergenic 25.0%
! TCAGAAAATGAAGAAAATAC+GGG - chr4_1:55458238-55458257 None:intergenic 25.0%
TATGAAGAAAGTTAAAGGAG+GGG - chr4_1:55456243-55456262 None:intergenic 30.0%
TTTATCAAGTGTGTAACAGT+AGG + chr4_1:55456349-55456368 Msa0557140:CDS 30.0%
TTATCAAGTGTGTAACAGTA+GGG + chr4_1:55456350-55456369 Msa0557140:CDS 30.0%
GTACAGTTAATCTTGGTTTA+TGG + chr4_1:55456575-55456594 Msa0557140:CDS 30.0%
ATTTATTGGTGTGAATTGTG+TGG + chr4_1:55456704-55456723 Msa0557140:intron 30.0%
!!! CATTTTTAGTTGACTAACAG+TGG + chr4_1:55456913-55456932 Msa0557140:intron 30.0%
! TGGTTGAAATGTTACTTAGA+TGG - chr4_1:55457010-55457029 None:intergenic 30.0%
TTACTGTCAACTTATAATGG+TGG - chr4_1:55457038-55457057 None:intergenic 30.0%
!!! CAATTTTTTATCGATCATCC+TGG + chr4_1:55457149-55457168 Msa0557140:CDS 30.0%
AATCAATGATTGTGGTAAAC+AGG + chr4_1:55457282-55457301 Msa0557140:three_prime_UTR 30.0%
ATCAATGATTGTGGTAAACA+GGG + chr4_1:55457283-55457302 Msa0557140:three_prime_UTR 30.0%
!!! GTTTTGTTTACAGAATGTGA+AGG + chr4_1:55457508-55457527 Msa0557140:intron 30.0%
ACATGTACTTTCCTCTAATT+TGG + chr4_1:55457602-55457621 Msa0557140:three_prime_UTR 30.0%
CATGTACTTTCCTCTAATTT+GGG + chr4_1:55457603-55457622 Msa0557140:three_prime_UTR 30.0%
ATGTACTTTCCTCTAATTTG+GGG + chr4_1:55457604-55457623 Msa0557140:three_prime_UTR 30.0%
AAACTGAAAATGAAATGGAG+TGG - chr4_1:55457650-55457669 None:intergenic 30.0%
!!! TTCCTTTTGTCTTGTTTTCT+GGG - chr4_1:55457913-55457932 None:intergenic 30.0%
!!! ATTCCTTTTGTCTTGTTTTC+TGG - chr4_1:55457914-55457933 None:intergenic 30.0%
TGTCAAGTCTCAATATAATG+AGG - chr4_1:55457971-55457990 None:intergenic 30.0%
TCACTAACAGAATTCCTAAA+TGG + chr4_1:55457999-55458018 Msa0557140:intron 30.0%
CAGAAAATGAAGAAAATACG+GGG - chr4_1:55458237-55458256 None:intergenic 30.0%
!!! AAGAGCAGTTTTTAGTTCAA+TGG - chr4_1:55458378-55458397 None:intergenic 30.0%
ACTGAAGGAAAATTTACACA+GGG - chr4_1:55458764-55458783 None:intergenic 30.0%
AAGGAATTCTTCAAACAGAT+GGG - chr4_1:55459087-55459106 None:intergenic 30.0%
CAATAACAAAACAACCATCT+GGG - chr4_1:55459274-55459293 None:intergenic 30.0%
!!! TGGTTGTTTTGTTATTGGAA+AGG + chr4_1:55459277-55459296 Msa0557140:intron 30.0%
!!! GGTTGTTTTGTTATTGGAAA+GGG + chr4_1:55459278-55459297 Msa0557140:intron 30.0%
!!! GTTGTTTTGTTATTGGAAAG+GGG + chr4_1:55459279-55459298 Msa0557140:intron 30.0%
! GCATTTCAACAACCTTTTAT+TGG - chr4_1:55459461-55459480 None:intergenic 30.0%
TTGAGTGAAATTCTTTGATG+AGG + chr4_1:55459523-55459542 Msa0557140:intron 30.0%
TGAGTGAAATTCTTTGATGA+GGG + chr4_1:55459524-55459543 Msa0557140:intron 30.0%
AGTAAAGGAAATCAGATTTG+AGG + chr4_1:55459592-55459611 Msa0557140:intron 30.0%
!! AGGTTTGTTGAGTAACTTAT+GGG + chr4_1:55459629-55459648 Msa0557140:intron 30.0%
GCATGAAAAGAAAGTAAATC+AGG + chr4_1:55459729-55459748 Msa0557140:intron 30.0%
AAATGGAGGCAGTATTTATT+AGG - chr4_1:55459933-55459952 None:intergenic 30.0%
TCAAATGGAAGAGTAAAATC+AGG + chr4_1:55460104-55460123 Msa0557140:intron 30.0%
AAGTTCACAAAATGCGAATT+TGG - chr4_1:55460419-55460438 None:intergenic 30.0%
TTTAAATGTTCAGTCCAAGT+TGG + chr4_1:55460488-55460507 Msa0557140:intron 30.0%
TTAAATGTTCAGTCCAAGTT+GGG + chr4_1:55460489-55460508 Msa0557140:intron 30.0%
! GAGCTTTTAGATGAGTTAAA+AGG - chr4_1:55460749-55460768 None:intergenic 30.0%
TCTAAAAGCTCATCAATAGT+AGG + chr4_1:55460758-55460777 Msa0557140:intron 30.0%
GTTAAATGCCATCACTATTA+AGG - chr4_1:55460798-55460817 None:intergenic 30.0%
TTAAAAAGAAAGACGGTTCA+TGG - chr4_1:55460844-55460863 None:intergenic 30.0%
! CTTTTTAACAAGTAACACAG+GGG + chr4_1:55460856-55460875 Msa0557140:intron 30.0%
GATAATTGCAGAAATGTTAG+AGG - chr4_1:55460918-55460937 None:intergenic 30.0%
TGTAATATAGTTGCTAAGTC+TGG + chr4_1:55461082-55461101 Msa0557140:intron 30.0%
! TTTTACCTACTACCTATTCA+AGG - chr4_1:55461412-55461431 None:intergenic 30.0%
TGAATAGGTAGTAGGTAAAA+TGG + chr4_1:55461412-55461431 Msa0557140:intron 30.0%
! TTTTCAGTTATGGTTGGAAA+CGG - chr4_1:55461508-55461527 None:intergenic 30.0%
CAACCATAACTGAAAATGAT+GGG + chr4_1:55461512-55461531 Msa0557140:intron 30.0%
TTCAAAAAGGTTGCAATTCT+TGG + chr4_1:55461553-55461572 Msa0557140:intron 30.0%
CGGAAATCAACAACAAAAAT+TGG + chr4_1:55461839-55461858 Msa0557140:intron 30.0%
! TGATGATTTTCAAAGGATGA+GGG + chr4_1:55462309-55462328 Msa0557140:intron 30.0%
!! CATTAGGTTGGATATTATAG+TGG + chr4_1:55462457-55462476 Msa0557140:intron 30.0%
!! TTGAATCTTGGATTTGTTGA+AGG + chr4_1:55462742-55462761 Msa0557140:intron 30.0%
!!! TTCCTTTTGTCTTGTTTTCT+GGG - chr4_1:55457913-55457932 None:intergenic 30.0%
!!! ATTCCTTTTGTCTTGTTTTC+TGG - chr4_1:55457914-55457933 None:intergenic 30.0%
TGTCAAGTCTCAATATAATG+AGG - chr4_1:55457971-55457990 None:intergenic 30.0%
TCACTAACAGAATTCCTAAA+TGG + chr4_1:55457999-55458018 Msa0557140:intron 30.0%
CAGAAAATGAAGAAAATACG+GGG - chr4_1:55458237-55458256 None:intergenic 30.0%
GACTTACTCCTAAGTAGTTA+AGG + chr4_1:55456204-55456223 Msa0557140:five_prime_UTR 35.0%
TAAGCAAGCCTTAACTACTT+AGG - chr4_1:55456215-55456234 None:intergenic 35.0%
ATGAAGAAAGTTAAAGGAGG+GGG - chr4_1:55456242-55456261 None:intergenic 35.0%
TATCAAGTGTGTAACAGTAG+GGG + chr4_1:55456351-55456370 Msa0557140:CDS 35.0%
TTAGAAACATACTGTGGGAA+AGG - chr4_1:55456425-55456444 None:intergenic 35.0%
CTGAAATTGTCAAACACAGT+TGG - chr4_1:55456532-55456551 None:intergenic 35.0%
TGACAATTTCAGTGCTAATG+TGG + chr4_1:55456540-55456559 Msa0557140:CDS 35.0%
GATGGTAGTACAGTTAATCT+TGG + chr4_1:55456568-55456587 Msa0557140:CDS 35.0%
GACACAAATAACAACTGCTA+AGG + chr4_1:55457175-55457194 Msa0557140:CDS 35.0%
CTGCAATAAAGATTGCATTG+AGG + chr4_1:55457543-55457562 Msa0557140:three_prime_UTR 35.0%
! TTTCTTTTTCTGTGTCTAGG+TGG + chr4_1:55457796-55457815 Msa0557140:three_prime_UTR 35.0%
TAACAGAATTCCTAAATGGC+AGG + chr4_1:55458003-55458022 Msa0557140:intron 35.0%
GAATCTACTATGACTCATGT+AGG + chr4_1:55458090-55458109 Msa0557140:intron 35.0%
AATGTGTATCATTACCGTGT+CGG + chr4_1:55458257-55458276 Msa0557140:intron 35.0%
!! AAGATCATTTTTGACCGACA+CGG - chr4_1:55458274-55458293 None:intergenic 35.0%
!!! CAGTTTTTAGTTCAATGGAC+TGG - chr4_1:55458373-55458392 None:intergenic 35.0%
AGAAGTGAGACATGAAAAAC+TGG + chr4_1:55458517-55458536 Msa0557140:intron 35.0%
GAAGTGAGACATGAAAAACT+GGG + chr4_1:55458518-55458537 Msa0557140:intron 35.0%
!! AGTTCTAGTTCATAAGCAAC+TGG + chr4_1:55458562-55458581 Msa0557140:intron 35.0%
AAACTTTCCAAGCGTTACTA+TGG - chr4_1:55458616-55458635 None:intergenic 35.0%
! AACTTTTGAGCTTGACCAAT+GGG - chr4_1:55458695-55458714 None:intergenic 35.0%
! AAACTTTTGAGCTTGACCAA+TGG - chr4_1:55458696-55458715 None:intergenic 35.0%
GACTGAAGGAAAATTTACAC+AGG - chr4_1:55458765-55458784 None:intergenic 35.0%
TCATCATTTCACTCTTCCAT+AGG - chr4_1:55458910-55458929 None:intergenic 35.0%
TTATACCAAAATTCGGCAAG+AGG + chr4_1:55458931-55458950 Msa0557140:intron 35.0%
TATACCAAAATTCGGCAAGA+GGG + chr4_1:55458932-55458951 Msa0557140:intron 35.0%
! AGGAATTTGGTCCATAGTTT+TGG + chr4_1:55458955-55458974 Msa0557140:intron 35.0%
TGAGTGAAACACCAAAACTA+TGG - chr4_1:55458969-55458988 None:intergenic 35.0%
GTATGAGCTACTAAAGGATA+GGG + chr4_1:55459056-55459075 Msa0557140:intron 35.0%
GAAGGAATTCTTCAAACAGA+TGG - chr4_1:55459088-55459107 None:intergenic 35.0%
AAGTATTACAGCAGCTACAT+TGG - chr4_1:55459202-55459221 None:intergenic 35.0%
!! AATGAGCAAATTTTGACAGC+CGG + chr4_1:55459238-55459257 Msa0557140:intron 35.0%
CCAATAACAAAACAACCATC+TGG - chr4_1:55459275-55459294 None:intergenic 35.0%
!! CCAGATGGTTGTTTTGTTAT+TGG + chr4_1:55459272-55459291 Msa0557140:intron 35.0%
AGTTTGGGAAGAAATCTCAA+TGG - chr4_1:55459322-55459341 None:intergenic 35.0%
TTGAGATTTCTTCCCAAACT+TGG + chr4_1:55459322-55459341 Msa0557140:intron 35.0%
ATTTCTTCCCAAACTTGGTT+AGG + chr4_1:55459327-55459346 Msa0557140:intron 35.0%
! GGGTGTTGTATTTATTGAAC+TGG + chr4_1:55459385-55459404 Msa0557140:intron 35.0%
GTTGTATTTATTGAACTGGC+AGG + chr4_1:55459389-55459408 Msa0557140:intron 35.0%
TGAAATTCTTTGATGAGGGT+AGG + chr4_1:55459528-55459547 Msa0557140:intron 35.0%
CTTTATATACCCACTGAAAC+CGG - chr4_1:55459561-55459580 None:intergenic 35.0%
! TGGGTATATAAAGGCGATTT+TGG + chr4_1:55459568-55459587 Msa0557140:intron 35.0%
!! AAAGGCGATTTTGGAAGTAA+AGG + chr4_1:55459577-55459596 Msa0557140:intron 35.0%
! ATCAGATTTGAGGCTGAATT+TGG + chr4_1:55459602-55459621 Msa0557140:intron 35.0%
!! CAGGTTTGTTGAGTAACTTA+TGG + chr4_1:55459628-55459647 Msa0557140:intron 35.0%
TTCTACAACTCAAATCCCAT+TGG - chr4_1:55459666-55459685 None:intergenic 35.0%
AAGTAAATCAGGCTTATCAG+AGG + chr4_1:55459740-55459759 Msa0557140:intron 35.0%
ATACACCAGAACAACAAAAG+TGG - chr4_1:55459848-55459867 None:intergenic 35.0%
TCATAAGACTCTTCAGACTT+TGG + chr4_1:55459880-55459899 Msa0557140:intron 35.0%
TAACTGAGGCAGTGAAAAAA+TGG - chr4_1:55459950-55459969 None:intergenic 35.0%
AGAACTCTATGCTTTAACTG+AGG - chr4_1:55459964-55459983 None:intergenic 35.0%
TGCATTTCAACAACTCAAGA+AGG - chr4_1:55460159-55460178 None:intergenic 35.0%
GAGTTGTTGAAATGCAGATT+TGG + chr4_1:55460163-55460182 Msa0557140:intron 35.0%
!! CTGTTTCTGTTATTGTCACA+GGG - chr4_1:55460452-55460471 None:intergenic 35.0%
!! TCTGTTTCTGTTATTGTCAC+AGG - chr4_1:55460453-55460472 None:intergenic 35.0%
TCTTAATCTATAGCCCAACT+TGG - chr4_1:55460505-55460524 None:intergenic 35.0%
ATTGTAGCCTGAAAAGTAGA+CGG + chr4_1:55460581-55460600 Msa0557140:intron 35.0%
ACATTCCAAAAACTGGATTC+CGG - chr4_1:55460661-55460680 None:intergenic 35.0%
TCAAAAATTGACCTTAGAGC+TGG - chr4_1:55460713-55460732 None:intergenic 35.0%
AGCTCATCAATAGTAGGAAT+TGG + chr4_1:55460764-55460783 Msa0557140:intron 35.0%
AAACCGATCCTTAATAGTGA+TGG + chr4_1:55460787-55460806 Msa0557140:intron 35.0%
ATGCCATCACTATTAAGGAT+CGG - chr4_1:55460793-55460812 None:intergenic 35.0%
ACGGTAAGGTTTAATGTTGA+TGG + chr4_1:55460970-55460989 Msa0557140:intron 35.0%
CGGTAAGGTTTAATGTTGAT+GGG + chr4_1:55460971-55460990 Msa0557140:intron 35.0%
GGTAAGGTTTAATGTTGATG+GGG + chr4_1:55460972-55460991 Msa0557140:intron 35.0%
! GTAAGGTTTAATGTTGATGG+GGG + chr4_1:55460973-55460992 Msa0557140:intron 35.0%
AATATAGTTGCTAAGTCTGG+TGG + chr4_1:55461085-55461104 Msa0557140:intron 35.0%
TTGTTGTGGTAACATGGTAA+TGG + chr4_1:55461189-55461208 Msa0557140:intron 35.0%
AACAACATAGTCTGACACAA+AGG + chr4_1:55461342-55461361 Msa0557140:intron 35.0%
ACAACATAGTCTGACACAAA+GGG + chr4_1:55461343-55461362 Msa0557140:intron 35.0%
AGGTAGTAGGTAAAATGGAA+TGG + chr4_1:55461417-55461436 Msa0557140:intron 35.0%
TAGGTAAAATGGAATGGTGA+GGG + chr4_1:55461423-55461442 Msa0557140:intron 35.0%
GGGGAATATTTATCTTGTAC+TGG - chr4_1:55461487-55461506 None:intergenic 35.0%
TTTCAGTTATGGTTGGAAAC+GGG - chr4_1:55461507-55461526 None:intergenic 35.0%
! CCATCATTTTCAGTTATGGT+TGG - chr4_1:55461514-55461533 None:intergenic 35.0%
CCAACCATAACTGAAAATGA+TGG + chr4_1:55461511-55461530 Msa0557140:intron 35.0%
! AGACCCATCATTTTCAGTTA+TGG - chr4_1:55461518-55461537 None:intergenic 35.0%
!! ATAACTGAAAATGATGGGTC+TGG + chr4_1:55461517-55461536 Msa0557140:intron 35.0%
AAAAGGTTGCAATTCTTGGT+TGG + chr4_1:55461557-55461576 Msa0557140:intron 35.0%
!! ATTTCCGTTCTCATTGATTC+CGG - chr4_1:55461601-55461620 None:intergenic 35.0%
GAATCAATGAGAACGGAAAT+GGG + chr4_1:55461601-55461620 Msa0557140:intron 35.0%
AATCAATGAGAACGGAAATG+GGG + chr4_1:55461602-55461621 Msa0557140:intron 35.0%
! AGGGATAAATGGAAGTTTTC+AGG + chr4_1:55461688-55461707 Msa0557140:intron 35.0%
CTCTGTTTCATTAGTGAGTT+GGG + chr4_1:55461798-55461817 Msa0557140:intron 35.0%
ATCAACAACAAAAATTGGGG+TGG + chr4_1:55461844-55461863 Msa0557140:intron 35.0%
TTACAACTTCGTCGTTCTAA+GGG - chr4_1:55461919-55461938 None:intergenic 35.0%
ATTACAACTTCGTCGTTCTA+AGG - chr4_1:55461920-55461939 None:intergenic 35.0%
AGAACGACGAAGTTGTAATT+CGG + chr4_1:55461921-55461940 Msa0557140:intron 35.0%
!!! GTATGGTTTTGGTGATTGTT+TGG + chr4_1:55462041-55462060 Msa0557140:intron 35.0%
! TTTGGTGATTGTTTGGAGTA+TGG + chr4_1:55462048-55462067 Msa0557140:intron 35.0%
! TTGGTGATTGTTTGGAGTAT+GGG + chr4_1:55462049-55462068 Msa0557140:intron 35.0%
TCCTTGATTGTTTCATCTCT+GGG - chr4_1:55462188-55462207 None:intergenic 35.0%
ATCCTTGATTGTTTCATCTC+TGG - chr4_1:55462189-55462208 None:intergenic 35.0%
AGAGATGAAACAATCAAGGA+TGG + chr4_1:55462188-55462207 Msa0557140:intron 35.0%
AAACAATCAAGGATGGCAAT+GGG + chr4_1:55462195-55462214 Msa0557140:intron 35.0%
TTTCTGATACTCTTGAACAG+AGG + chr4_1:55462257-55462276 Msa0557140:intron 35.0%
!!! AGCTTGCTGATGATTTTCAA+AGG + chr4_1:55462302-55462321 Msa0557140:intron 35.0%
! CTGATGATTTTCAAAGGATG+AGG + chr4_1:55462308-55462327 Msa0557140:intron 35.0%
CGGTTCAAATCCATTAGATT+GGG - chr4_1:55462508-55462527 None:intergenic 35.0%
ACGGTTCAAATCCATTAGAT+TGG - chr4_1:55462509-55462528 None:intergenic 35.0%
GGATTTGAACCGTCAAAAAA+TGG + chr4_1:55462516-55462535 Msa0557140:intron 35.0%
TTGAACCGTCAAAAAATGGA+AGG + chr4_1:55462520-55462539 Msa0557140:intron 35.0%
TGAACCGTCAAAAAATGGAA+GGG + chr4_1:55462521-55462540 Msa0557140:intron 35.0%
! AAAAATGGAAGGGTGAGTTT+TGG + chr4_1:55462531-55462550 Msa0557140:intron 35.0%
! AAAATGGAAGGGTGAGTTTT+GGG + chr4_1:55462532-55462551 Msa0557140:intron 35.0%
GTTTGGTTGTGAATTGTTAC+TGG + chr4_1:55462566-55462585 Msa0557140:intron 35.0%
! GTTACTGGTTGAAGTTGTAT+TGG + chr4_1:55462581-55462600 Msa0557140:intron 35.0%
! AGGAAGATGATGATGTTTGT+TGG + chr4_1:55462613-55462632 Msa0557140:intron 35.0%
TTTGTTGGAGTTCAAGTATC+TGG + chr4_1:55462628-55462647 Msa0557140:intron 35.0%
TTGTTGGAGTTCAAGTATCT+GGG + chr4_1:55462629-55462648 Msa0557140:intron 35.0%
TTCAAGTATCTGGGTTTGTA+AGG + chr4_1:55462638-55462657 Msa0557140:intron 35.0%
! TAAGTTCGGTGATTGAATCT+TGG + chr4_1:55462730-55462749 Msa0557140:intron 35.0%
!! ATCTTGGATTTGTTGAAGGT+CGG + chr4_1:55462746-55462765 Msa0557140:intron 35.0%
TAACAGAATTCCTAAATGGC+AGG + chr4_1:55458003-55458022 Msa0557140:intron 35.0%
GAATCTACTATGACTCATGT+AGG + chr4_1:55458090-55458109 Msa0557140:intron 35.0%
GAAGAAGAATGAGTACAGCT+AGG + chr4_1:55456326-55456345 Msa0557140:exon 40.0%
CAATTTCAGTGCTAATGTGG+TGG + chr4_1:55456543-55456562 Msa0557140:CDS 40.0%
! GTGTGAATTGTGTGGATTAC+AGG + chr4_1:55456712-55456731 Msa0557140:intron 40.0%
TTAAGGCCATTGAGTTACAG+AGG + chr4_1:55456754-55456773 Msa0557140:CDS 40.0%
TCCAAATGTGCCTATTGTGT+TGG + chr4_1:55456959-55456978 Msa0557140:CDS 40.0%
ACCAACACAATAGGCACATT+TGG - chr4_1:55456963-55456982 None:intergenic 40.0%
AAATGTGCCTATTGTGTTGG+TGG + chr4_1:55456962-55456981 Msa0557140:CDS 40.0%
! AATGTGCCTATTGTGTTGGT+GGG + chr4_1:55456963-55456982 Msa0557140:CDS 40.0%
TTTGTTCCCACCAACACAAT+AGG - chr4_1:55456972-55456991 None:intergenic 40.0%
! GTGTTGGTGGGAACAAAATT+AGG + chr4_1:55456975-55456994 Msa0557140:CDS 40.0%
!! AACTTATAATGGTGGACTGG+TGG - chr4_1:55457030-55457049 None:intergenic 40.0%
!! GTCAACTTATAATGGTGGAC+TGG - chr4_1:55457033-55457052 None:intergenic 40.0%
TCGCAAATCTGTGCATACAT+AGG - chr4_1:55457120-55457139 None:intergenic 40.0%
TTTCACACACCCCAAATTAG+AGG - chr4_1:55457616-55457635 None:intergenic 40.0%
! TGGGCTTTCCCTTTTTCTTT+GGG - chr4_1:55457894-55457913 None:intergenic 40.0%
AGCCCAGAAAACAAGACAAA+AGG + chr4_1:55457908-55457927 Msa0557140:intron 40.0%
TTCCTAAATGGCAGGATCAA+TGG + chr4_1:55458011-55458030 Msa0557140:intron 40.0%
TCTACTATGACTCATGTAGG+TGG + chr4_1:55458093-55458112 Msa0557140:intron 40.0%
AGTCAATTGTTGAACCTGCT+GGG + chr4_1:55458148-55458167 Msa0557140:intron 40.0%
! GGCCTTTTGATGTTTCTCTT+GGG + chr4_1:55458169-55458188 Msa0557140:intron 40.0%
AGAGTCAAACTGTTAACCCA+AGG - chr4_1:55458195-55458214 None:intergenic 40.0%
TGATCTTGTCCTCAAGATCA+AGG + chr4_1:55458287-55458306 Msa0557140:intron 40.0%
GATCTTGTCCTCAAGATCAA+GGG + chr4_1:55458288-55458307 Msa0557140:intron 40.0%
TCACTTCTCAAAGAATGCCA+TGG - chr4_1:55458505-55458524 None:intergenic 40.0%
TCCTATCTTTGACAGATAGC+TGG + chr4_1:55458644-55458663 Msa0557140:intron 40.0%
TATCTTTGACAGATAGCTGG+CGG + chr4_1:55458647-55458666 Msa0557140:intron 40.0%
ATTTACACAGGGCTCGTAAT+AGG - chr4_1:55458753-55458772 None:intergenic 40.0%
ACAACGACAACACATCATGA+GGG - chr4_1:55458788-55458807 None:intergenic 40.0%
AACAACGACAACACATCATG+AGG - chr4_1:55458789-55458808 None:intergenic 40.0%
! AGCTTGTGGATTACATTCCA+GGG - chr4_1:55458846-55458865 None:intergenic 40.0%
! AAGCTTGTGGATTACATTCC+AGG - chr4_1:55458847-55458866 None:intergenic 40.0%
TGGAATGTAATCCACAAGCT+TGG + chr4_1:55458846-55458865 Msa0557140:intron 40.0%
GGAATGTAATCCACAAGCTT+GGG + chr4_1:55458847-55458866 Msa0557140:intron 40.0%
GACCATAAAGAGCCTCAAAA+GGG + chr4_1:55458878-55458897 Msa0557140:intron 40.0%
ACCATAAAGAGCCTCAAAAG+GGG + chr4_1:55458879-55458898 Msa0557140:intron 40.0%
! AACGGTTTAGAACCTCTGTT+TGG + chr4_1:55459016-55459035 Msa0557140:intron 40.0%
GGTATGAGCTACTAAAGGAT+AGG + chr4_1:55459055-55459074 Msa0557140:intron 40.0%
TTTCATCAGCAACTTCTGGA+AGG - chr4_1:55459106-55459125 None:intergenic 40.0%
! GACTTTTCATCAGCAACTTC+TGG - chr4_1:55459110-55459129 None:intergenic 40.0%
GTAGCTGCTGTAATACTTGT+TGG + chr4_1:55459204-55459223 Msa0557140:intron 40.0%
GTTATTGGAAAGGGGTAAGT+TGG + chr4_1:55459287-55459306 Msa0557140:intron 40.0%
GCATACACCTAACCAAGTTT+GGG - chr4_1:55459337-55459356 None:intergenic 40.0%
TGCATACACCTAACCAAGTT+TGG - chr4_1:55459338-55459357 None:intergenic 40.0%
ACTTGGTTAGGTGTATGCAA+AGG + chr4_1:55459339-55459358 Msa0557140:intron 40.0%
TTGACATCTTTGTACATGCC+TGG + chr4_1:55459435-55459454 Msa0557140:intron 40.0%
! TCAACAACCTTTTATTGGCC+AGG - chr4_1:55459456-55459475 None:intergenic 40.0%
GAATTTCACTCAACACCCAT+GGG - chr4_1:55459516-55459535 None:intergenic 40.0%
AGAATTTCACTCAACACCCA+TGG - chr4_1:55459517-55459536 None:intergenic 40.0%
CGGTTTCAGTGGGTATATAA+AGG + chr4_1:55459559-55459578 Msa0557140:intron 40.0%
! AATTCCTTGAGTTGCTGAAG+CGG + chr4_1:55459684-55459703 Msa0557140:intron 40.0%
! ATGCTTTTAGCACTTCCACT+TGG - chr4_1:55459713-55459732 None:intergenic 40.0%
!! AAGTGGCTCTCTAAGTTGAT+GGG - chr4_1:55459831-55459850 None:intergenic 40.0%
! AAAGTGGCTCTCTAAGTTGA+TGG - chr4_1:55459832-55459851 None:intergenic 40.0%
AGACAACTTACGGCTGAAAA+AGG + chr4_1:55460016-55460035 Msa0557140:intron 40.0%
GTATCAGTGGTCACTTCAAA+TGG + chr4_1:55460089-55460108 Msa0557140:intron 40.0%
AAATCAGGAAGAGTCAGCAA+TGG + chr4_1:55460119-55460138 Msa0557140:intron 40.0%
!! GTTTTGAGCAAATCAGTGAG+AGG + chr4_1:55460212-55460231 Msa0557140:intron 40.0%
TGTAAAACCCTGTCAAACCA+AGG + chr4_1:55460270-55460289 Msa0557140:intron 40.0%
AACTAGAAGCCATTGCAAAC+TGG - chr4_1:55460331-55460350 None:intergenic 40.0%
TGATGGTCATTACGAGTTCT+TGG - chr4_1:55460633-55460652 None:intergenic 40.0%
CGTAATGACCATCAAATGTC+CGG + chr4_1:55460639-55460658 Msa0557140:intron 40.0%
! AATGTCCGGAATCCAGTTTT+TGG + chr4_1:55460653-55460672 Msa0557140:intron 40.0%
GAGGAAGACATTCCAAAAAC+TGG - chr4_1:55460668-55460687 None:intergenic 40.0%
TGGTTACCATCAAATACGGT+TGG - chr4_1:55460693-55460712 None:intergenic 40.0%
GAGCTGGTTACCATCAAATA+CGG - chr4_1:55460697-55460716 None:intergenic 40.0%
! TTTGATGGTAACCAGCTCTA+AGG + chr4_1:55460699-55460718 Msa0557140:intron 40.0%
AGTAACACAGGGGAAGAAAA+AGG + chr4_1:55460866-55460885 Msa0557140:intron 40.0%
GAAGAAAAAGGACTTGTGCT+GGG + chr4_1:55460878-55460897 Msa0557140:intron 40.0%
ATTGCAGAAATGTTAGAGGC+TGG - chr4_1:55460914-55460933 None:intergenic 40.0%
AGAGATGAATGTGATGGTCT+TGG + chr4_1:55461008-55461027 Msa0557140:intron 40.0%
! TGATGGTCTTGGTCTCTATT+TGG + chr4_1:55461019-55461038 Msa0557140:intron 40.0%
! GATGGTCTTGGTCTCTATTT+GGG + chr4_1:55461020-55461039 Msa0557140:intron 40.0%
! ATGGTCTTGGTCTCTATTTG+GGG + chr4_1:55461021-55461040 Msa0557140:intron 40.0%
TATTTGGGGGTAAGGTTGTT+GGG + chr4_1:55461035-55461054 Msa0557140:intron 40.0%
TGCTAAGTCTGGTGGTAATT+TGG + chr4_1:55461093-55461112 Msa0557140:intron 40.0%
GGTGGTAATTTGGATAAGTC+TGG + chr4_1:55461103-55461122 Msa0557140:intron 40.0%
!! CATTTCGTTGGTAACAGTGA+GGG + chr4_1:55461126-55461145 Msa0557140:intron 40.0%
!! GTTGGTTTGTTGTGGTAACA+TGG + chr4_1:55461183-55461202 Msa0557140:intron 40.0%
AATGGAATGACAAGCTGCTA+TGG + chr4_1:55461207-55461226 Msa0557140:intron 40.0%
GGCATTAGTGTGTAACATTC+TGG + chr4_1:55461228-55461247 Msa0557140:intron 40.0%
TGTGTAACATTCTGGTGAGT+TGG + chr4_1:55461236-55461255 Msa0557140:intron 40.0%
CAACATAGTCTGACACAAAG+GGG + chr4_1:55461344-55461363 Msa0557140:intron 40.0%
GTAGAATGGTTACAAACCCT+AGG - chr4_1:55461370-55461389 None:intergenic 40.0%
GTAGGTAAAATGGAATGGTG+AGG + chr4_1:55461422-55461441 Msa0557140:intron 40.0%
!! TAGTGGTGGGTATTGCTAAA+GGG + chr4_1:55461446-55461465 Msa0557140:intron 40.0%
!! TTGTACTGGCTATTGTTCAG+AGG - chr4_1:55461473-55461492 None:intergenic 40.0%
TTCAGTTATGGTTGGAAACG+GGG - chr4_1:55461506-55461525 None:intergenic 40.0%
TGTGCTTGGTAGGTTCAAAA+AGG + chr4_1:55461540-55461559 Msa0557140:intron 40.0%
GAGAATGTTATGAGAGCTTC+CGG + chr4_1:55461579-55461598 Msa0557140:intron 40.0%
GGAATCAATGAGAACGGAAA+TGG + chr4_1:55461600-55461619 Msa0557140:intron 40.0%
TGATAGCATGGAGGGATAAA+TGG + chr4_1:55461677-55461696 Msa0557140:intron 40.0%
!!! ATGGAAGTTTTCAGGTGAGT+CGG + chr4_1:55461696-55461715 Msa0557140:intron 40.0%
TGAAGGAGGTGAAGTTGAAT+TGG + chr4_1:55461720-55461739 Msa0557140:intron 40.0%
GAGGTGAAGTTGAATTGGAA+TGG + chr4_1:55461725-55461744 Msa0557140:intron 40.0%
GTGAAGTTGAATTGGAATGG+AGG + chr4_1:55461728-55461747 Msa0557140:intron 40.0%
TTGAATTGGAATGGAGGTCA+GGG + chr4_1:55461734-55461753 Msa0557140:intron 40.0%
CCAACTCACTAATGAAACAG+AGG - chr4_1:55461800-55461819 None:intergenic 40.0%
CCTCTGTTTCATTAGTGAGT+TGG + chr4_1:55461797-55461816 Msa0557140:intron 40.0%
! TTCATTAGTGAGTTGGGTTG+TGG + chr4_1:55461804-55461823 Msa0557140:intron 40.0%
!! TTAATGGGTATAGGCGGTTT+TGG + chr4_1:55461958-55461977 Msa0557140:intron 40.0%
! TGATTGTTTGGAGTATGGGT+AGG + chr4_1:55462053-55462072 Msa0557140:intron 40.0%
CCTATGGCTTGAGAAATTGT+GGG + chr4_1:55462120-55462139 Msa0557140:intron 40.0%
CTATGGCTTGAGAAATTGTG+GGG + chr4_1:55462121-55462140 Msa0557140:intron 40.0%
TATGGCTTGAGAAATTGTGG+GGG + chr4_1:55462122-55462141 Msa0557140:intron 40.0%
GCAAGTTCATGTTGAATGTC+AGG + chr4_1:55462156-55462175 Msa0557140:intron 40.0%
GAAACAATCAAGGATGGCAA+TGG + chr4_1:55462194-55462213 Msa0557140:intron 40.0%
TACATCGCCAGTTATATGAC+CGG - chr4_1:55462426-55462445 None:intergenic 40.0%
TATAACTGGCGATGTAAGAG+AGG + chr4_1:55462430-55462449 Msa0557140:intron 40.0%
GGTTGAAAAATTGGTCAGCT+TGG + chr4_1:55462478-55462497 Msa0557140:intron 40.0%
GCTTGGAAAACCCAATCTAA+TGG + chr4_1:55462495-55462514 Msa0557140:intron 40.0%
!!! CTCACCCTTCCATTTTTTGA+CGG - chr4_1:55462528-55462547 None:intergenic 40.0%
! AAATGGAAGGGTGAGTTTTG+GGG + chr4_1:55462533-55462552 Msa0557140:intron 40.0%
!!! TGAGTTTTGGGGTTTTGAAG+TGG + chr4_1:55462544-55462563 Msa0557140:intron 40.0%
!!! TTTGGGGTTTTGAAGTGGTT+TGG + chr4_1:55462549-55462568 Msa0557140:intron 40.0%
! GTTGAAGTTGTATTGGTGAG+TGG + chr4_1:55462588-55462607 Msa0557140:intron 40.0%
AGGCTTGTACGGATAAAACA+TGG + chr4_1:55462658-55462677 Msa0557140:intron 40.0%
CGGATAAAACATGGATTTCG+TGG + chr4_1:55462667-55462686 Msa0557140:intron 40.0%
! TGGGCTTTCCCTTTTTCTTT+GGG - chr4_1:55457894-55457913 None:intergenic 40.0%
AGCCCAGAAAACAAGACAAA+AGG + chr4_1:55457908-55457927 Msa0557140:intron 40.0%
TTCCTAAATGGCAGGATCAA+TGG + chr4_1:55458011-55458030 Msa0557140:intron 40.0%
TCTACTATGACTCATGTAGG+TGG + chr4_1:55458093-55458112 Msa0557140:intron 40.0%
AGTCAATTGTTGAACCTGCT+GGG + chr4_1:55458148-55458167 Msa0557140:intron 40.0%
! GGCCTTTTGATGTTTCTCTT+GGG + chr4_1:55458169-55458188 Msa0557140:intron 40.0%
AGAGTCAAACTGTTAACCCA+AGG - chr4_1:55458195-55458214 None:intergenic 40.0%
AAGTGTGTAACAGTAGGGGA+TGG + chr4_1:55456355-55456374 Msa0557140:CDS 45.0%
TTTCAGTGCTAATGTGGTGG+TGG + chr4_1:55456546-55456565 Msa0557140:CDS 45.0%
CTTGGTTTATGGGATACTGC+AGG + chr4_1:55456586-55456605 Msa0557140:CDS 45.0%
TCAGCTCCTCTGTAACTCAA+TGG - chr4_1:55456763-55456782 None:intergenic 45.0%
!! GTTGTTATTTGTGTCGCTCC+AGG - chr4_1:55457170-55457189 None:intergenic 45.0%
!! GGTTTCTTCTTTGGCTTTGG+TGG - chr4_1:55457569-55457588 None:intergenic 45.0%
! CGTGGTTTCTTCTTTGGCTT+TGG - chr4_1:55457572-55457591 None:intergenic 45.0%
GTCTTGCGTGGTTTCTTCTT+TGG - chr4_1:55457578-55457597 None:intergenic 45.0%
AGAAGAAACCACGCAAGACA+AGG + chr4_1:55457579-55457598 Msa0557140:three_prime_UTR 45.0%
! CTGGGCTTTCCCTTTTTCTT+TGG - chr4_1:55457895-55457914 None:intergenic 45.0%
! GTCCATTGATCCTGCCATTT+AGG - chr4_1:55458016-55458035 None:intergenic 45.0%
ACTCATGTAGGTGGCAGATA+AGG + chr4_1:55458102-55458121 Msa0557140:intron 45.0%
GAGTCAATTGTTGAACCTGC+TGG + chr4_1:55458147-55458166 Msa0557140:intron 45.0%
! GGGCCTTTTGATGTTTCTCT+TGG + chr4_1:55458168-55458187 Msa0557140:intron 45.0%
GGCCCAAGAGAAACATCAAA+AGG - chr4_1:55458174-55458193 None:intergenic 45.0%
TTGATGTTTCTCTTGGGCCT+TGG + chr4_1:55458175-55458194 Msa0557140:intron 45.0%
TGATGTTTCTCTTGGGCCTT+GGG + chr4_1:55458176-55458195 Msa0557140:intron 45.0%
TTGTCCTCAAGATCAAGGGT+GGG + chr4_1:55458292-55458311 Msa0557140:intron 45.0%
AACCCCATTGGAAGCTACAT+GGG - chr4_1:55458347-55458366 None:intergenic 45.0%
AAACCCCATTGGAAGCTACA+TGG - chr4_1:55458348-55458367 None:intergenic 45.0%
CAACGCAACACTATGCTTGA+TGG - chr4_1:55458409-55458428 None:intergenic 45.0%
CATAAGCAACTGGACCAATG+CGG + chr4_1:55458572-55458591 Msa0557140:intron 45.0%
GCCAGCTATCTGTCAAAGAT+AGG - chr4_1:55458648-55458667 None:intergenic 45.0%
! GCAATTTGAGGTAGACCCAT+TGG + chr4_1:55458677-55458696 Msa0557140:intron 45.0%
CAACGACAACACATCATGAG+GGG - chr4_1:55458787-55458806 None:intergenic 45.0%
ATTCCAGGGGACTCTAATCT+AGG - chr4_1:55458832-55458851 None:intergenic 45.0%
! GCTTGTGGATTACATTCCAG+GGG - chr4_1:55458845-55458864 None:intergenic 45.0%
ATGTAATCCACAAGCTTGGG+AGG + chr4_1:55458850-55458869 Msa0557140:intron 45.0%
CGACCATAAAGAGCCTCAAA+AGG + chr4_1:55458877-55458896 Msa0557140:intron 45.0%
!!! ACCCCTTTTGAGGCTCTTTA+TGG - chr4_1:55458883-55458902 None:intergenic 45.0%
! CATAGGAATGACCCCTTTTG+AGG - chr4_1:55458893-55458912 None:intergenic 45.0%
CTCAAAAGGGGTCATTCCTA+TGG + chr4_1:55458891-55458910 Msa0557140:intron 45.0%
GTGTTTCACTCACGAAGCAT+CGG + chr4_1:55458977-55458996 Msa0557140:intron 45.0%
TCAAACTGATGGCCAAACAG+AGG - chr4_1:55459031-55459050 None:intergenic 45.0%
TCTGTTTGGCCATCAGTTTG+AGG + chr4_1:55459030-55459049 Msa0557140:intron 45.0%
CTGTTTGGCCATCAGTTTGA+GGG + chr4_1:55459031-55459050 Msa0557140:intron 45.0%
TCATACCACCCTCAAACTGA+TGG - chr4_1:55459042-55459061 None:intergenic 45.0%
AGGGTGGTATGAGCTACTAA+AGG + chr4_1:55459050-55459069 Msa0557140:intron 45.0%
TGCTGATGAAAAGTCTGTCC+CGG + chr4_1:55459115-55459134 Msa0557140:intron 45.0%
GAAGACAATTGTGAGTGACC+GGG - chr4_1:55459136-55459155 None:intergenic 45.0%
CGAAGACAATTGTGAGTGAC+CGG - chr4_1:55459137-55459156 None:intergenic 45.0%
CGGTCACTCACAATTGTCTT+CGG + chr4_1:55459135-55459154 Msa0557140:intron 45.0%
GGTCACTCACAATTGTCTTC+GGG + chr4_1:55459136-55459155 Msa0557140:intron 45.0%
GTCACTCACAATTGTCTTCG+GGG + chr4_1:55459137-55459156 Msa0557140:intron 45.0%
CAAGAGATTTACCGCCTTCA+CGG - chr4_1:55459165-55459184 None:intergenic 45.0%
GGTTAGGTGTATGCAAAGGT+TGG + chr4_1:55459343-55459362 Msa0557140:intron 45.0%
GTGTATGCAAAGGTTGGAGA+AGG + chr4_1:55459349-55459368 Msa0557140:intron 45.0%
AAAGGTTGGAGAAGGCCATA+TGG + chr4_1:55459357-55459376 Msa0557140:intron 45.0%
AAGGTTGGAGAAGGCCATAT+GGG + chr4_1:55459358-55459377 Msa0557140:intron 45.0%
TACAACACCCAAAGCCCATA+TGG - chr4_1:55459375-55459394 None:intergenic 45.0%
GTACATGCCTGGCCAATAAA+AGG + chr4_1:55459446-55459465 Msa0557140:intron 45.0%
AGGTTGTTGAAATGCGAGCT+AGG + chr4_1:55459466-55459485 Msa0557140:intron 45.0%
GGTTGTTGAAATGCGAGCTA+GGG + chr4_1:55459467-55459486 Msa0557140:intron 45.0%
!! TTGAGGCTGAATTTGGTGTC+AGG + chr4_1:55459609-55459628 Msa0557140:intron 45.0%
! ATGGGTTAAAGCCTTGCCAA+TGG + chr4_1:55459647-55459666 Msa0557140:intron 45.0%
TGGGTTAAAGCCTTGCCAAT+GGG + chr4_1:55459648-55459667 Msa0557140:intron 45.0%
CAACTCAAATCCCATTGGCA+AGG - chr4_1:55459661-55459680 None:intergenic 45.0%
ATCAGGCTTATCAGAGGTTC+TGG + chr4_1:55459746-55459765 Msa0557140:intron 45.0%
!!! GAGAGCCACTTTTGTTGTTC+TGG + chr4_1:55459840-55459859 Msa0557140:intron 45.0%
CTGAGGCAGTGAAAAAATGG+AGG - chr4_1:55459947-55459966 None:intergenic 45.0%
TGTTGAAGATACAGCAAGCC+TGG + chr4_1:55459992-55460011 Msa0557140:intron 45.0%
GTTGAAGATACAGCAAGCCT+GGG + chr4_1:55459993-55460012 Msa0557140:intron 45.0%
TTACGGCTGAAAAAGGCGAT+TGG + chr4_1:55460023-55460042 Msa0557140:intron 45.0%
GAAGTGACCACTGATACTTC+CGG - chr4_1:55460086-55460105 None:intergenic 45.0%
AGGAAGAGTCAGCAATGGAA+GGG + chr4_1:55460124-55460143 Msa0557140:intron 45.0%
CAGCAATGGAAGGGATAACA+TGG + chr4_1:55460133-55460152 Msa0557140:intron 45.0%
! ATCAGTGAGAGGACTAGCAA+TGG + chr4_1:55460223-55460242 Msa0557140:intron 45.0%
!! GCAATGGCTTCTAGTTTCTC+TGG + chr4_1:55460335-55460354 Msa0557140:intron 45.0%
GATCAGCTTGAACACCTTCA+GGG + chr4_1:55460357-55460376 Msa0557140:intron 45.0%
ATCAGCTTGAACACCTTCAG+GGG + chr4_1:55460358-55460377 Msa0557140:intron 45.0%
GTTCAATCTGTGCAGTACCT+TGG - chr4_1:55460395-55460414 None:intergenic 45.0%
!! AAACGCACCGTCTACTTTTC+AGG - chr4_1:55460591-55460610 None:intergenic 45.0%
GAGTTCTTGGTTATGCCCTT+TGG - chr4_1:55460620-55460639 None:intergenic 45.0%
ACTGGATTCCGGACATTTGA+TGG - chr4_1:55460650-55460669 None:intergenic 45.0%
! CCATCAAATACGGTTGGTTG+AGG - chr4_1:55460687-55460706 None:intergenic 45.0%
CCTCAACCAACCGTATTTGA+TGG + chr4_1:55460684-55460703 Msa0557140:intron 45.0%
GGAAGAAAAAGGACTTGTGC+TGG + chr4_1:55460877-55460896 Msa0557140:intron 45.0%
! TCTTAGCCATTGCCTCCTTT+TGG + chr4_1:55460936-55460955 Msa0557140:intron 45.0%
ACACTACCAAAAGGAGGCAA+TGG - chr4_1:55460945-55460964 None:intergenic 45.0%
!!! ATTGCCTCCTTTTGGTAGTG+TGG + chr4_1:55460944-55460963 Msa0557140:intron 45.0%
!!! TTGCCTCCTTTTGGTAGTGT+GGG + chr4_1:55460945-55460964 Msa0557140:intron 45.0%
TTACCCACACTACCAAAAGG+AGG - chr4_1:55460951-55460970 None:intergenic 45.0%
!!! CCTTTTGGTAGTGTGGGTAA+CGG + chr4_1:55460951-55460970 Msa0557140:intron 45.0%
! AGGTTTAATGTTGATGGGGG+TGG + chr4_1:55460976-55460995 Msa0557140:intron 45.0%
TTGGGGAGAGATGAATGTGA+TGG + chr4_1:55461002-55461021 Msa0557140:intron 45.0%
! TGGTCTTGGTCTCTATTTGG+GGG + chr4_1:55461022-55461041 Msa0557140:intron 45.0%
TTGGTCTCTATTTGGGGGTA+AGG + chr4_1:55461027-55461046 Msa0557140:intron 45.0%
CTATTTGGGGGTAAGGTTGT+TGG + chr4_1:55461034-55461053 Msa0557140:intron 45.0%
ATTTGGGGGTAAGGTTGTTG+GGG + chr4_1:55461036-55461055 Msa0557140:intron 45.0%
TTGGGGTGGAGAAAACATGA+AGG + chr4_1:55461053-55461072 Msa0557140:intron 45.0%
GGATAAGTCTGGCATTTCGT+TGG + chr4_1:55461114-55461133 Msa0557140:intron 45.0%
!! GCATTTCGTTGGTAACAGTG+AGG + chr4_1:55461125-55461144 Msa0557140:intron 45.0%
!! GTTGGTAACAGTGAGGGAAT+TGG + chr4_1:55461132-55461151 Msa0557140:intron 45.0%
AGTGAGGGAATTGGTATCAG+TGG + chr4_1:55461141-55461160 Msa0557140:intron 45.0%
GTGAGGGAATTGGTATCAGT+GGG + chr4_1:55461142-55461161 Msa0557140:intron 45.0%
TGAGGGAATTGGTATCAGTG+GGG + chr4_1:55461143-55461162 Msa0557140:intron 45.0%
! ATTGGTATCAGTGGGGGTTT+TGG + chr4_1:55461150-55461169 Msa0557140:intron 45.0%
!!! GGTTTTGGTTGGAATGTGGT+TGG + chr4_1:55461165-55461184 Msa0557140:intron 45.0%
!! GGAATGTGGTTGGTTTGTTG+TGG + chr4_1:55461175-55461194 Msa0557140:intron 45.0%
! GTAACATTCTGGTGAGTTGG+TGG + chr4_1:55461239-55461258 Msa0557140:intron 45.0%
!! TGAGTTGGTGGAATGTTGCA+GGG + chr4_1:55461251-55461270 Msa0557140:intron 45.0%
TGGAGCCATATAGGGTGATA+AGG + chr4_1:55461290-55461309 Msa0557140:intron 45.0%
GGAGCCATATAGGGTGATAA+GGG + chr4_1:55461291-55461310 Msa0557140:intron 45.0%
ATGCGGTCTTAGGTGTAGAA+TGG - chr4_1:55461384-55461403 None:intergenic 45.0%
ACCTATTCAAGGAGCTGATG+CGG - chr4_1:55461401-55461420 None:intergenic 45.0%
CAGCTCCTTGAATAGGTAGT+AGG + chr4_1:55461404-55461423 Msa0557140:intron 45.0%
AAATGGAATGGTGAGGGTAG+TGG + chr4_1:55461429-55461448 Msa0557140:intron 45.0%
!! GTAGTGGTGGGTATTGCTAA+AGG + chr4_1:55461445-55461464 Msa0557140:intron 45.0%
GCTTCCGGAATCAATGAGAA+CGG + chr4_1:55461594-55461613 Msa0557140:intron 45.0%
! CTTTAATGGTGGCTTGGAAG+CGG + chr4_1:55461629-55461648 Msa0557140:intron 45.0%
!! TGTTTTGGGTGAAGGTTGTC+CGG + chr4_1:55461654-55461673 Msa0557140:intron 45.0%
TTATCCCTCCATGCTATCAC+CGG - chr4_1:55461676-55461695 None:intergenic 45.0%
!!! TTTTCAGGTGAGTCGGTTGA+AGG + chr4_1:55461703-55461722 Msa0557140:intron 45.0%
GTTGAATTGGAATGGAGGTC+AGG + chr4_1:55461733-55461752 Msa0557140:intron 45.0%
TGAATTGGAATGGAGGTCAG+GGG + chr4_1:55461735-55461754 Msa0557140:intron 45.0%
ACGACGAAGTTGTAATTCGG+CGG + chr4_1:55461924-55461943 Msa0557140:intron 45.0%
!! GAGAGGCGTTTAATGGGTAT+AGG + chr4_1:55461949-55461968 Msa0557140:intron 45.0%
! AGGCGTTTAATGGGTATAGG+CGG + chr4_1:55461952-55461971 Msa0557140:intron 45.0%
GTAAGGCTAATCTGGGTGTA+GGG + chr4_1:55461989-55462008 Msa0557140:intron 45.0%
! TAGGGTTCGGTAGTGAAGTT+GGG + chr4_1:55462007-55462026 Msa0557140:intron 45.0%
! TTGTTTGGAGTATGGGTAGG+TGG + chr4_1:55462056-55462075 Msa0557140:intron 45.0%
GCCTATGGCTTGAGAAATTG+TGG + chr4_1:55462119-55462138 Msa0557140:intron 45.0%
CCCACAATTTCTCAAGCCAT+AGG - chr4_1:55462123-55462142 None:intergenic 45.0%
ATGGCTTGAGAAATTGTGGG+GGG + chr4_1:55462123-55462142 Msa0557140:intron 45.0%
GCCCAGAGATGAAACAATCA+AGG + chr4_1:55462184-55462203 Msa0557140:intron 45.0%
CTGATACTCTTGAACAGAGG+AGG + chr4_1:55462260-55462279 Msa0557140:intron 45.0%
GTGACCTAGAGCTGAGATTT+GGG - chr4_1:55462335-55462354 None:intergenic 45.0%
!! CAAATCTCAGCTCTAGGTCA+CGG + chr4_1:55462334-55462353 Msa0557140:intron 45.0%
!! AAATCTCAGCTCTAGGTCAC+GGG + chr4_1:55462335-55462354 Msa0557140:intron 45.0%
CAGCAACTTACTCTCAACCT+GGG - chr4_1:55462370-55462389 None:intergenic 45.0%
ATGTAAGAGAGGCGAGCATT+AGG + chr4_1:55462441-55462460 Msa0557140:intron 45.0%
! AGTTGTATTGGTGAGTGGTG+AGG + chr4_1:55462593-55462612 Msa0557140:intron 45.0%
CTGGGTTTGTAAGGCTTGTA+CGG + chr4_1:55462647-55462666 Msa0557140:intron 45.0%
AAACATGGATTTCGTGGCGT+TGG + chr4_1:55462673-55462692 Msa0557140:intron 45.0%
AGCTCGAAATTCTGCTAAGG+CGG + chr4_1:55462704-55462723 Msa0557140:intron 45.0%
!! TTGGATTTGTTGAAGGTCGG+CGG + chr4_1:55462749-55462768 Msa0557140:intron 45.0%
! CTGGGCTTTCCCTTTTTCTT+TGG - chr4_1:55457895-55457914 None:intergenic 45.0%
! GTCCATTGATCCTGCCATTT+AGG - chr4_1:55458016-55458035 None:intergenic 45.0%
ACTCATGTAGGTGGCAGATA+AGG + chr4_1:55458102-55458121 Msa0557140:intron 45.0%
GAGTCAATTGTTGAACCTGC+TGG + chr4_1:55458147-55458166 Msa0557140:intron 45.0%
! GGGCCTTTTGATGTTTCTCT+TGG + chr4_1:55458168-55458187 Msa0557140:intron 45.0%
GGCCCAAGAGAAACATCAAA+AGG - chr4_1:55458174-55458193 None:intergenic 45.0%
TTGATGTTTCTCTTGGGCCT+TGG + chr4_1:55458175-55458194 Msa0557140:intron 45.0%
TGATGTTTCTCTTGGGCCTT+GGG + chr4_1:55458176-55458195 Msa0557140:intron 45.0%
!! AGTGCTAATGTGGTGGTGGA+TGG + chr4_1:55456550-55456569 Msa0557140:CDS 50.0%
!! GTGCAGCTCTAAAACACAGC+AGG + chr4_1:55457348-55457367 Msa0557140:three_prime_UTR 50.0%
GTACATGTCCTTGTCTTGCG+TGG - chr4_1:55457590-55457609 None:intergenic 50.0%
GAAACATCAAAAGGCCCAGC+AGG - chr4_1:55458165-55458184 None:intergenic 50.0%
TACGGGGCAAAAAGCAACAG+AGG - chr4_1:55458221-55458240 None:intergenic 50.0%
CTTGTCCTCAAGATCAAGGG+TGG + chr4_1:55458291-55458310 Msa0557140:intron 50.0%
TGTCCTCAAGATCAAGGGTG+GGG + chr4_1:55458293-55458312 Msa0557140:intron 50.0%
TCCTCCCATGTAGCTTCCAA+TGG + chr4_1:55458340-55458359 Msa0557140:intron 50.0%
CCTCCCATGTAGCTTCCAAT+GGG + chr4_1:55458341-55458360 Msa0557140:intron 50.0%
CTCCCATGTAGCTTCCAATG+GGG + chr4_1:55458342-55458361 Msa0557140:intron 50.0%
!! ATGGACTGGACAAACCCCAT+TGG - chr4_1:55458359-55458378 None:intergenic 50.0%
!! AGGGGCAAGAGAAAGTGCTT+CGG + chr4_1:55458444-55458463 Msa0557140:intron 50.0%
!! GCAAGAGAAAGTGCTTCGGT+TGG + chr4_1:55458448-55458467 Msa0557140:intron 50.0%
!! AGAGAAAGTGCTTCGGTTGG+TGG + chr4_1:55458451-55458470 Msa0557140:intron 50.0%
!! AAGTGCTTCGGTTGGTGGTA+AGG + chr4_1:55458456-55458475 Msa0557140:intron 50.0%
!! AGTGCTTCGGTTGGTGGTAA+GGG + chr4_1:55458457-55458476 Msa0557140:intron 50.0%
AAGGGGCAGACTTGTACATC+AGG + chr4_1:55458475-55458494 Msa0557140:intron 50.0%
GGCAGACTTGTACATCAGGT+TGG + chr4_1:55458479-55458498 Msa0557140:intron 50.0%
!! CTTGTACATCAGGTTGGCCA+TGG + chr4_1:55458485-55458504 Msa0557140:intron 50.0%
ACTGGGTGAATTCGAGCTGT+AGG + chr4_1:55458535-55458554 Msa0557140:intron 50.0%
GAAGGGACCATAGTAACGCT+TGG + chr4_1:55458606-55458625 Msa0557140:intron 50.0%
TTGACAGATAGCTGGCGGTA+TGG + chr4_1:55458652-55458671 Msa0557140:intron 50.0%
ACACATCATGAGGGGACTGA+AGG - chr4_1:55458779-55458798 None:intergenic 50.0%
TAATCCACAAGCTTGGGAGG+AGG + chr4_1:55458853-55458872 Msa0557140:intron 50.0%
ACCAAAATTCGGCAAGAGGG+AGG + chr4_1:55458935-55458954 Msa0557140:intron 50.0%
! TCCTCCCTCTTGCCGAATTT+TGG - chr4_1:55458939-55458958 None:intergenic 50.0%
TTCGGCAAGAGGGAGGAATT+TGG + chr4_1:55458942-55458961 Msa0557140:intron 50.0%
!! TTTCACTCACGAAGCATCGG+AGG + chr4_1:55458980-55458999 Msa0557140:intron 50.0%
! AGCATCGGAGGTAAGTCTCA+AGG + chr4_1:55458992-55459011 Msa0557140:intron 50.0%
GGAGGTAAGTCTCAAGGCAA+CGG + chr4_1:55458998-55459017 Msa0557140:intron 50.0%
TTTGGCCATCAGTTTGAGGG+TGG + chr4_1:55459034-55459053 Msa0557140:intron 50.0%
CCATCTGGGTTGTAGTAGAC+CGG - chr4_1:55459260-55459279 None:intergenic 50.0%
GAGAAGGCCATATGGGCTTT+GGG + chr4_1:55459365-55459384 Msa0557140:intron 50.0%
ACTGGCAGGTTGCACATTGT+TGG + chr4_1:55459403-55459422 Msa0557140:intron 50.0%
TGTTGAAATGCGAGCTAGGG+TGG + chr4_1:55459470-55459489 Msa0557140:intron 50.0%
TTTCACTCAACACCCATGGG+AGG - chr4_1:55459513-55459532 None:intergenic 50.0%
CTTTGATGAGGGTAGGTTGC+AGG + chr4_1:55459535-55459554 Msa0557140:intron 50.0%
CAAGCCTGGGAGACAACTTA+CGG + chr4_1:55460006-55460025 Msa0557140:intron 50.0%
! TGAAAAAGGCGATTGGCTGG+TGG + chr4_1:55460030-55460049 Msa0557140:intron 50.0%
GATACTTCCGGAGTCGCTAT+TGG - chr4_1:55460074-55460093 None:intergenic 50.0%
CAGGAAGAGTCAGCAATGGA+AGG + chr4_1:55460123-55460142 Msa0557140:intron 50.0%
! AGTGAGAGGACTAGCAATGG+TGG + chr4_1:55460226-55460245 Msa0557140:intron 50.0%
! GCGCATTCCTTGGTTTGACA+GGG - chr4_1:55460280-55460299 None:intergenic 50.0%
GGATCAGCTTGAACACCTTC+AGG + chr4_1:55460356-55460375 Msa0557140:intron 50.0%
GGTCACATCATATCCCCTGA+AGG - chr4_1:55460374-55460393 None:intergenic 50.0%
CAGGGGATATGATGTGACCA+AGG + chr4_1:55460375-55460394 Msa0557140:intron 50.0%
GGTGCGTTTGAGAGTCCAAA+GGG + chr4_1:55460602-55460621 Msa0557140:intron 50.0%
CCGTTACCCACACTACCAAA+AGG - chr4_1:55460954-55460973 None:intergenic 50.0%
! TGGTAGTGTGGGTAACGGTA+AGG + chr4_1:55460956-55460975 Msa0557140:intron 50.0%
! ATGTTGATGGGGGTGGAGTT+TGG + chr4_1:55460983-55461002 Msa0557140:intron 50.0%
! TGTTGATGGGGGTGGAGTTT+GGG + chr4_1:55460984-55461003 Msa0557140:intron 50.0%
GAGGGAATTGGTATCAGTGG+GGG + chr4_1:55461144-55461163 Msa0557140:intron 50.0%
!! GTATCAGTGGGGGTTTTGGT+TGG + chr4_1:55461154-55461173 Msa0557140:intron 50.0%
!!! TGGGGGTTTTGGTTGGAATG+TGG + chr4_1:55461161-55461180 Msa0557140:intron 50.0%
!! GTGAGTTGGTGGAATGTTGC+AGG + chr4_1:55461250-55461269 Msa0557140:intron 50.0%
!! GAGTTGGTGGAATGTTGCAG+GGG + chr4_1:55461252-55461271 Msa0557140:intron 50.0%
TGTTGCAGGGGTAGGTAAAG+AGG + chr4_1:55461264-55461283 Msa0557140:intron 50.0%
GTTGCAGGGGTAGGTAAAGA+GGG + chr4_1:55461265-55461284 Msa0557140:intron 50.0%
TTGCAGGGGTAGGTAAAGAG+GGG + chr4_1:55461266-55461285 Msa0557140:intron 50.0%
AAGAGGGGTTGGAGCCATAT+AGG + chr4_1:55461281-55461300 Msa0557140:intron 50.0%
AGAGGGGTTGGAGCCATATA+GGG + chr4_1:55461282-55461301 Msa0557140:intron 50.0%
GGCACCCTTATCACCCTATA+TGG - chr4_1:55461298-55461317 None:intergenic 50.0%
ACCGCATCAGCTCCTTGAAT+AGG + chr4_1:55461397-55461416 Msa0557140:intron 50.0%
!! AATGATGGGTCTGGTGTGCT+TGG + chr4_1:55461526-55461545 Msa0557140:intron 50.0%
CAATGAGAACGGAAATGGGG+TGG + chr4_1:55461605-55461624 Msa0557140:intron 50.0%
GGAAATGGGGTGGCCTTTAA+TGG + chr4_1:55461615-55461634 Msa0557140:intron 50.0%
AATGGGGTGGCCTTTAATGG+TGG + chr4_1:55461618-55461637 Msa0557140:intron 50.0%
CGCTTCCAAGCCACCATTAA+AGG - chr4_1:55461631-55461650 None:intergenic 50.0%
!! GCTTGGAAGCGGAGTGTTTT+GGG + chr4_1:55461640-55461659 Msa0557140:intron 50.0%
!! AAGCGGAGTGTTTTGGGTGA+AGG + chr4_1:55461646-55461665 Msa0557140:intron 50.0%
AAGGTTGTCCGGTGATAGCA+TGG + chr4_1:55461665-55461684 Msa0557140:intron 50.0%
TTGTCCGGTGATAGCATGGA+GGG + chr4_1:55461669-55461688 Msa0557140:intron 50.0%
GGTTGTGGAATCGTCTTCGT+CGG + chr4_1:55461819-55461838 Msa0557140:intron 50.0%
! TGCGATGAGCGATTTGTTCC+AGG - chr4_1:55461883-55461902 None:intergenic 50.0%
CGACGAAGTTGTAATTCGGC+GGG + chr4_1:55461925-55461944 Msa0557140:intron 50.0%
GACGAAGTTGTAATTCGGCG+GGG + chr4_1:55461926-55461945 Msa0557140:intron 50.0%
ACGAAGTTGTAATTCGGCGG+GGG + chr4_1:55461927-55461946 Msa0557140:intron 50.0%
!! ATGGGTATAGGCGGTTTTGG+TGG + chr4_1:55461961-55461980 Msa0557140:intron 50.0%
!! TGGTGCTGGTAAGGCTAATC+TGG + chr4_1:55461981-55462000 Msa0557140:intron 50.0%
!! GGTGCTGGTAAGGCTAATCT+GGG + chr4_1:55461982-55462001 Msa0557140:intron 50.0%
GGTAAGGCTAATCTGGGTGT+AGG + chr4_1:55461988-55462007 Msa0557140:intron 50.0%
GCTAATCTGGGTGTAGGGTT+CGG + chr4_1:55461994-55462013 Msa0557140:intron 50.0%
! GTAGGGTTCGGTAGTGAAGT+TGG + chr4_1:55462006-55462025 Msa0557140:intron 50.0%
! AGGGTTCGGTAGTGAAGTTG+GGG + chr4_1:55462008-55462027 Msa0557140:intron 50.0%
!! GGTGGTGAGGAGTATGGTTT+TGG + chr4_1:55462030-55462049 Msa0557140:intron 50.0%
TGGAGTATGGGTAGGTGGAA+CGG + chr4_1:55462061-55462080 Msa0557140:intron 50.0%
! CAGCTTCGATTCGACAAGCT+TGG + chr4_1:55462092-55462111 Msa0557140:intron 50.0%
GACAAGCTTGGCTAAGCCTA+TGG + chr4_1:55462104-55462123 Msa0557140:intron 50.0%
CAATCAAGGATGGCAATGGG+AGG + chr4_1:55462198-55462217 Msa0557140:intron 50.0%
CGTGACCTAGAGCTGAGATT+TGG - chr4_1:55462336-55462355 None:intergenic 50.0%
! GCTCTAGGTCACGGGTAAAA+CGG + chr4_1:55462343-55462362 Msa0557140:intron 50.0%
CCAGCAACTTACTCTCAACC+TGG - chr4_1:55462371-55462390 None:intergenic 50.0%
! CCAGGTTGAGAGTAAGTTGC+TGG + chr4_1:55462368-55462387 Msa0557140:intron 50.0%
AGTTGCTGGTGTGAAGCCAT+TGG + chr4_1:55462382-55462401 Msa0557140:intron 50.0%
AAGCCATTGGAACCAGCCAA+GGG + chr4_1:55462395-55462414 Msa0557140:intron 50.0%
TATATGACCGGAGATGCCCT+TGG - chr4_1:55462414-55462433 None:intergenic 50.0%
GGCATCTCCGGTCATATAAC+TGG + chr4_1:55462416-55462435 Msa0557140:intron 50.0%
AAGAGAGGCGAGCATTAGGT+TGG + chr4_1:55462445-55462464 Msa0557140:intron 50.0%
!! GATTTCGTGGCGTTGGTCTT+GGG + chr4_1:55462680-55462699 Msa0557140:intron 50.0%
GGCAGCTCGAAATTCTGCTA+AGG + chr4_1:55462701-55462720 Msa0557140:intron 50.0%
TCGAAATTCTGCTAAGGCGG+TGG + chr4_1:55462707-55462726 Msa0557140:intron 50.0%
TGCTAAGGCGGTGGTAAGTT+CGG + chr4_1:55462716-55462735 Msa0557140:intron 50.0%
GAAACATCAAAAGGCCCAGC+AGG - chr4_1:55458165-55458184 None:intergenic 50.0%
TACGGGGCAAAAAGCAACAG+AGG - chr4_1:55458221-55458240 None:intergenic 50.0%
!! ACAGTAGGGGATGGTGCTGT+AGG + chr4_1:55456364-55456383 Msa0557140:CDS 55.0%
CTACCCCACCCTTGATCTTG+AGG - chr4_1:55458299-55458318 None:intergenic 55.0%
GATCAAGGGTGGGGTAGTCA+CGG + chr4_1:55458302-55458321 Msa0557140:intron 55.0%
CCCATTGGAAGCTACATGGG+AGG - chr4_1:55458344-55458363 None:intergenic 55.0%
GTTGCTGCAAGACACGCAGA+GGG + chr4_1:55458425-55458444 Msa0557140:intron 55.0%
TTGCTGCAAGACACGCAGAG+GGG + chr4_1:55458426-55458445 Msa0557140:intron 55.0%
!! GTGCTTCGGTTGGTGGTAAG+GGG + chr4_1:55458458-55458477 Msa0557140:intron 55.0%
GGGTGAATTCGAGCTGTAGG+AGG + chr4_1:55458538-55458557 Msa0557140:intron 55.0%
GGCGGTATGGCTGCAATTTG+AGG + chr4_1:55458665-55458684 Msa0557140:intron 55.0%
GAGCCTAGATTAGAGTCCCC+TGG + chr4_1:55458826-55458845 Msa0557140:intron 55.0%
!! TTGTCTTCGGGGTACCGTGA+AGG + chr4_1:55459148-55459167 Msa0557140:intron 55.0%
CCGGTCTACTACAACCCAGA+TGG + chr4_1:55459257-55459276 Msa0557140:intron 55.0%
GGAGAAGGCCATATGGGCTT+TGG + chr4_1:55459364-55459383 Msa0557140:intron 55.0%
!! GGGTGGCTTTGAATCCAGAG+TGG + chr4_1:55459487-55459506 Msa0557140:intron 55.0%
AATCCAGAGTGGCCTCCCAT+GGG + chr4_1:55459498-55459517 Msa0557140:intron 55.0%
! TCCTTGAGTTGCTGAAGCGG+TGG + chr4_1:55459687-55459706 Msa0557140:intron 55.0%
GCGACAGTGTTGTCTTTCCC+TGG + chr4_1:55459780-55459799 Msa0557140:intron 55.0%
TCAGCCGTAAGTTGTCTCCC+AGG - chr4_1:55460013-55460032 None:intergenic 55.0%
GGCTGAAAAAGGCGATTGGC+TGG + chr4_1:55460027-55460046 Msa0557140:intron 55.0%
AACAGCGCCAATAGCGACTC+CGG + chr4_1:55460064-55460083 Msa0557140:intron 55.0%
!! AGCGACTCCGGAAGTATCAG+TGG + chr4_1:55460076-55460095 Msa0557140:intron 55.0%
! CGCGCATTCCTTGGTTTGAC+AGG - chr4_1:55460281-55460300 None:intergenic 55.0%
ACTGCACTACGCGCATTCCT+TGG - chr4_1:55460290-55460309 None:intergenic 55.0%
CGTAGTGCAGTGAGAGACGT+GGG + chr4_1:55460299-55460318 Msa0557140:intron 55.0%
! GGGTAGTGGCCAGTTTGCAA+TGG + chr4_1:55460319-55460338 Msa0557140:intron 55.0%
CGGTGCGTTTGAGAGTCCAA+AGG + chr4_1:55460601-55460620 Msa0557140:intron 55.0%
! GTTGATGGGGGTGGAGTTTG+GGG + chr4_1:55460985-55461004 Msa0557140:intron 55.0%
TGGTGGAATGTTGCAGGGGT+AGG + chr4_1:55461256-55461275 Msa0557140:intron 55.0%
AGGGGTAGGTAAAGAGGGGT+TGG + chr4_1:55461270-55461289 Msa0557140:intron 55.0%
AGTCTGACACAAAGGGGCCT+AGG + chr4_1:55461350-55461369 Msa0557140:intron 55.0%
GTCTGACACAAAGGGGCCTA+GGG + chr4_1:55461351-55461370 Msa0557140:intron 55.0%
CAAGGAGCTGATGCGGTCTT+AGG - chr4_1:55461394-55461413 None:intergenic 55.0%
! TGGAATGGTGAGGGTAGTGG+TGG + chr4_1:55461432-55461451 Msa0557140:intron 55.0%
! GGAATGGTGAGGGTAGTGGT+GGG + chr4_1:55461433-55461452 Msa0557140:intron 55.0%
ATGGGTCTGGTGTGCTTGGT+AGG + chr4_1:55461530-55461549 Msa0557140:intron 55.0%
GGTGGCCTTTAATGGTGGCT+TGG + chr4_1:55461623-55461642 Msa0557140:intron 55.0%
!! GGCTTGGAAGCGGAGTGTTT+TGG + chr4_1:55461639-55461658 Msa0557140:intron 55.0%
GTTGTCCGGTGATAGCATGG+AGG + chr4_1:55461668-55461687 Msa0557140:intron 55.0%
TCAGGTGAGTCGGTTGAAGG+AGG + chr4_1:55461706-55461725 Msa0557140:intron 55.0%
TTGGAATGGAGGTCAGGGGA+TGG + chr4_1:55461739-55461758 Msa0557140:intron 55.0%
TGGAATGGAGGTCAGGGGAT+GGG + chr4_1:55461740-55461759 Msa0557140:intron 55.0%
!! CACTGGTTGTTGGCTCAGCA+AGG + chr4_1:55461764-55461783 Msa0557140:intron 55.0%
!! TGGTTGTTGGCTCAGCAAGG+AGG + chr4_1:55461767-55461786 Msa0557140:intron 55.0%
! GGTGGTTTGCAACGATGTCC+TGG + chr4_1:55461862-55461881 Msa0557140:intron 55.0%
!!! ATAGGCGGTTTTGGTGGTGC+TGG + chr4_1:55461967-55461986 Msa0557140:intron 55.0%
!!! CGGTTTTGGTGGTGCTGGTA+AGG + chr4_1:55461972-55461991 Msa0557140:intron 55.0%
! GGGTTCGGTAGTGAAGTTGG+GGG + chr4_1:55462009-55462028 Msa0557140:intron 55.0%
TTCGGTAGTGAAGTTGGGGG+TGG + chr4_1:55462012-55462031 Msa0557140:intron 55.0%
TAGTGAAGTTGGGGGTGGTG+AGG + chr4_1:55462017-55462036 Msa0557140:intron 55.0%
GGAGTATGGGTAGGTGGAAC+GGG + chr4_1:55462062-55462081 Msa0557140:intron 55.0%
GAGAAATTGTGGGGGGTCGA+AGG + chr4_1:55462130-55462149 Msa0557140:intron 55.0%
AATTGTGGGGGGTCGAAGGA+TGG + chr4_1:55462134-55462153 Msa0557140:intron 55.0%
CAAGGATGGCAATGGGAGGA+AGG + chr4_1:55462202-55462221 Msa0557140:intron 55.0%
GATGGCAATGGGAGGAAGGT+TGG + chr4_1:55462206-55462225 Msa0557140:intron 55.0%
AGGGCCCAAATCTCAGCTCT+AGG + chr4_1:55462328-55462347 Msa0557140:intron 55.0%
GAAGCCATTGGAACCAGCCA+AGG + chr4_1:55462394-55462413 Msa0557140:intron 55.0%
! ATGCCCTTGGCTGGTTCCAA+TGG - chr4_1:55462401-55462420 None:intergenic 55.0%
!! GGATTTCGTGGCGTTGGTCT+TGG + chr4_1:55462679-55462698 Msa0557140:intron 55.0%
CGTTGCTGCAAGACACGCAG+AGG + chr4_1:55458424-55458443 Msa0557140:intron 60.0%
CAACTGGACCAATGCGGCGA+AGG + chr4_1:55458578-55458597 Msa0557140:intron 60.0%
GACCAATGCGGCGAAGGATG+CGG + chr4_1:55458584-55458603 Msa0557140:intron 60.0%
TTCCGCATCCTTCGCCGCAT+TGG - chr4_1:55458589-55458608 None:intergenic 60.0%
AATGCGGCGAAGGATGCGGA+AGG + chr4_1:55458588-55458607 Msa0557140:intron 60.0%
ATGCGGCGAAGGATGCGGAA+GGG + chr4_1:55458589-55458608 Msa0557140:intron 60.0%
TCGTCCTCCTCCCAAGCTTG+TGG - chr4_1:55458860-55458879 None:intergenic 60.0%
!! TCTTCGGGGTACCGTGAAGG+CGG + chr4_1:55459151-55459170 Msa0557140:intron 60.0%
GAATCCAGAGTGGCCTCCCA+TGG + chr4_1:55459497-55459516 Msa0557140:intron 60.0%
GATGAGGGTAGGTTGCAGGC+CGG + chr4_1:55459539-55459558 Msa0557140:intron 60.0%
! AGGTTGCAGGCCGGTTTCAG+TGG + chr4_1:55459548-55459567 Msa0557140:intron 60.0%
! GGTTGCAGGCCGGTTTCAGT+GGG + chr4_1:55459549-55459568 Msa0557140:intron 60.0%
GCCACCGCTTCAGCAACTCA+AGG - chr4_1:55459691-55459710 None:intergenic 60.0%
TTGCTGAAGCGGTGGCCAAG+TGG + chr4_1:55459695-55459714 Msa0557140:intron 60.0%
GCGTAGTGCAGTGAGAGACG+TGG + chr4_1:55460298-55460317 Msa0557140:intron 60.0%
GCAGTGAGAGACGTGGGTAG+TGG + chr4_1:55460305-55460324 Msa0557140:intron 60.0%
TGGGGGTAAGGTTGTTGGGG+TGG + chr4_1:55461039-55461058 Msa0557140:intron 60.0%
! GGGGATGGGTCACTGGTTGT+TGG + chr4_1:55461754-55461773 Msa0557140:intron 60.0%
GTTGTAATTCGGCGGGGGAG+AGG + chr4_1:55461932-55461951 Msa0557140:intron 60.0%
!! GCGGGGGAGAGGCGTTTAAT+GGG + chr4_1:55461943-55461962 Msa0557140:intron 60.0%
GTTGGGGGTGGTGAGGAGTA+TGG + chr4_1:55462024-55462043 Msa0557140:intron 60.0%
GTATGGGTAGGTGGAACGGG+AGG + chr4_1:55462065-55462084 Msa0557140:intron 60.0%
GTCACGGGTAAAACGGTCCC+AGG + chr4_1:55462350-55462369 Msa0557140:intron 60.0%
!! GAACCAGCCAAGGGCATCTC+CGG + chr4_1:55462404-55462423 Msa0557140:intron 60.0%
TTTGTTGAAGGTCGGCGGCG+CGG + chr4_1:55462754-55462773 Msa0557140:intron 60.0%
ACACCCATGGGAGGCCACTC+TGG - chr4_1:55459504-55459523 None:intergenic 65.0%
GAGGTCAGGGGATGGGTCAC+TGG + chr4_1:55461747-55461766 Msa0557140:intron 65.0%
!! GGCGGGGGAGAGGCGTTTAA+TGG + chr4_1:55461942-55461961 Msa0557140:intron 65.0%
TGACCGGAGATGCCCTTGGC+TGG - chr4_1:55462410-55462429 None:intergenic 65.0%
TTGTTGAAGGTCGGCGGCGC+GGG + chr4_1:55462755-55462774 Msa0557140:intron 65.0%
TGAAGGTCGGCGGCGCGGGT+AGG + chr4_1:55462759-55462778 Msa0557140:intron 75.0%
! GTCGGCGGCGCGGGTAGGCA+TGG + chr4_1:55462764-55462783 Msa0557140:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 55456200 55463246 55456200 ID=Msa0557140;Name=Msa0557140
chr4_1 mRNA 55456200 55463246 55456200 ID=Msa0557140-mRNA-1;Parent=Msa0557140;Name=Msa0557140-mRNA-1;_AED=0.14;_eAED=0.14;_QI=134|1|1|1|0.83|0.57|7|531|146
chr4_1 exon 55456200 55456432 55456200 ID=Msa0557140-mRNA-1:exon:16547;Parent=Msa0557140-mRNA-1
chr4_1 exon 55456520 55456607 55456520 ID=Msa0557140-mRNA-1:exon:16548;Parent=Msa0557140-mRNA-1
chr4_1 exon 55456734 55456843 55456734 ID=Msa0557140-mRNA-1:exon:16549;Parent=Msa0557140-mRNA-1
chr4_1 exon 55456933 55456996 55456933 ID=Msa0557140-mRNA-1:exon:16550;Parent=Msa0557140-mRNA-1
chr4_1 exon 55457132 55457369 55457132 ID=Msa0557140-mRNA-1:exon:16551;Parent=Msa0557140-mRNA-1
chr4_1 exon 55457521 55457861 55457521 ID=Msa0557140-mRNA-1:exon:16552;Parent=Msa0557140-mRNA-1
chr4_1 exon 55463215 55463246 55463215 ID=Msa0557140-mRNA-1:exon:16553;Parent=Msa0557140-mRNA-1
chr4_1 five_prime_UTR 55456200 55456333 55456200 ID=Msa0557140-mRNA-1:five_prime_utr;Parent=Msa0557140-mRNA-1
chr4_1 CDS 55456334 55456432 55456334 ID=Msa0557140-mRNA-1:cds;Parent=Msa0557140-mRNA-1
chr4_1 CDS 55456520 55456607 55456520 ID=Msa0557140-mRNA-1:cds;Parent=Msa0557140-mRNA-1
chr4_1 CDS 55456734 55456843 55456734 ID=Msa0557140-mRNA-1:cds;Parent=Msa0557140-mRNA-1
chr4_1 CDS 55456933 55456996 55456933 ID=Msa0557140-mRNA-1:cds;Parent=Msa0557140-mRNA-1
chr4_1 CDS 55457132 55457211 55457132 ID=Msa0557140-mRNA-1:cds;Parent=Msa0557140-mRNA-1
chr4_1 three_prime_UTR 55457212 55457369 55457212 ID=Msa0557140-mRNA-1:three_prime_utr;Parent=Msa0557140-mRNA-1
chr4_1 three_prime_UTR 55457521 55457861 55457521 ID=Msa0557140-mRNA-1:three_prime_utr;Parent=Msa0557140-mRNA-1
chr4_1 three_prime_UTR 55463215 55463246 55463215 ID=Msa0557140-mRNA-1:three_prime_utr;Parent=Msa0557140-mRNA-1
Gene Sequence

>Msa0557140

ATGAGTACAGCTAGGTTTATCAAGTGTGTAACAGTAGGGGATGGTGCTGTAGGAAAGACATGCATGCTTATATCATATACAAGCAATACCTTTCCCACAGATTATGTTCCAACTGTGTTTGACAATTTCAGTGCTAATGTGGTGGTGGATGGTAGTACAGTTAATCTTGGTTTATGGGATACTGCAGGACAAGAAGATTACAATAGATTAAGGCCATTGAGTTACAGAGGAGCTGATGTGTTTTTGTTGTGTTTTTCTCTCATTAGTAAAGCTAGTTATGAGAACATTTCCAAAAAGTGGATATCTGAGCTGAGACATTATGCTCCAAATGTGCCTATTGTGTTGGTGGGAACAAAATTAGATTTGCGAGATGACAAGCAATTTTTTATCGATCATCCTGGAGCGACACAAATAACAACTGCTAAGGCATGTCGTCGATAA
Protein sequence

>Msa0557140

MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLCFSLISKASYENISKKWISELRHYAPNVPIVLVGTKLDLRDDKQFFIDHPGATQITTAKACRR*