AlfalfaGEDB | Msa0300210

M. sativa cultivar zhongmu-4 / Msa0300210

KEGG: -
GO: GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0300210	XP_013465160.1	99.234	261	2	0	1	261	1	261	0.0	545

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0300210	sp\|O49459\|NAC73_ARATH	79.104	201	40	2	25	224	36	235	2.09e-116	339

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0300210	A0A072VM12	99.234	261	2	0	1	261	1	261	0.0	545

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TFs/TRs:

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Gene ID	Type	Classification
Msa0300210	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0199960	Msa0300210	0.809358	1.968827e-50	-8.615850e-47
Msa0220870	Msa0300210	0.897421	1.429384e-76	-8.615850e-47
Msa0227950	Msa0300210	0.942769	3.990098e-102	-8.615850e-47
Msa0242490	Msa0300210	0.803378	3.586358e-49	-8.615850e-47
Msa0243600	Msa0300210	0.831277	1.828887e-55	-8.615850e-47
Msa0282220	Msa0300210	0.826025	3.402370e-54	-8.615850e-47
Msa0300180	Msa0300210	0.860377	2.154510e-63	-8.615850e-47
Msa0300210	Msa0319940	0.821920	3.123437e-53	-8.615850e-47
Msa0300210	Msa0337540	0.909242	7.073731e-82	-8.615850e-47
Msa0300210	Msa0548620	0.800587	1.343993e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0300210	MtrunA17_Chr2g0324961	99.234	261	2	0	1	261	1	261	0.0	545
Msa0300210	MtrunA17_Chr4g0040541	78.491	265	53	3	1	262	1	264	4.33e-148	415
Msa0300210	MtrunA17_Chr4g0046431	68.061	263	72	7	9	264	26	283	2.25e-123	354
Msa0300210	MtrunA17_Chr2g0282871	61.278	266	94	4	1	259	1	264	1.13e-113	329
Msa0300210	MtrunA17_Chr8g0367761	83.240	179	29	1	26	204	46	223	4.32e-109	316
Msa0300210	MtrunA17_Chr8g0389661	73.737	198	40	4	27	217	30	222	4.93e-96	290
Msa0300210	MtrunA17_Chr5g0422431	55.446	202	86	2	20	221	32	229	9.69e-71	224
Msa0300210	MtrunA17_Chr1g0198751	57.068	191	78	2	25	215	37	223	1.33e-70	224
Msa0300210	MtrunA17_Chr7g0227071	54.595	185	80	2	25	208	34	215	6.63e-64	208
Msa0300210	MtrunA17_Chr1g0198741	55.357	112	50	0	104	215	7	118	2.00e-35	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0300210	AT4G28500.1	79.104	201	40	2	25	224	36	235	2.13e-117	339
Msa0300210	AT1G28470.1	76.289	194	44	1	24	215	50	243	7.27e-106	310
Msa0300210	AT4G29230.3	71.144	201	45	2	25	217	29	224	1.30e-97	293
Msa0300210	AT4G29230.1	71.144	201	45	2	25	217	29	224	5.18e-97	293
Msa0300210	AT4G29230.2	71.144	201	44	2	25	217	29	223	1.49e-96	292
Msa0300210	AT5G56620.3	68.342	199	48	4	27	214	25	219	1.18e-90	275
Msa0300210	AT5G56620.2	68.342	199	48	4	27	214	25	219	1.50e-90	274
Msa0300210	AT5G56620.1	68.342	199	48	4	27	214	25	219	1.78e-90	273
Msa0300210	AT1G25580.1	57.143	189	71	4	25	213	37	215	5.29e-66	212
Msa0300210	AT5G14490.2	50.785	191	85	4	30	213	30	218	5.92e-55	179

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Find 85 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGTACCATCATGAAC+AGG	0.483493	2_3:+55593424	None:intergenic
AAAGCCAGAGAAAACAAATT+GGG	0.504516	2_3:-55593724	Msa0300210:CDS
AAAGTGCACACAGATGCTGA+TGG	0.650930	2_3:-55593858	Msa0300210:CDS
AACAAATAGTAGTTTAAGAG+GGG	0.562162	2_3:-55593325	Msa0300210:three_prime_UTR
AACATTTGGAAGCAAAAGTG+AGG	0.616853	2_3:-55594193	Msa0300210:CDS
AACTTGCCACTCACGAAAAC+TGG	0.294833	2_3:+55593798	None:intergenic
AAGAACTTGTCTCTTCTAAA+GGG	0.412652	2_3:+55594785	None:intergenic
AATAATGAAGAGGAGAAAGA+AGG	0.526318	2_3:-55593678	Msa0300210:CDS
AATGAACCACCACATTGTCT+AGG	0.596526	2_3:+55593618	None:intergenic
AATTAACCTGGTAATTTCTC+TGG	0.347710	2_3:+55594089	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAACTTGTCTCTTCTAAA+GGG	+	chr2_3:55593170-55593189	None:intergenic	30.0%
GTTAATTAATTATAGGGTGC+TGG	-	chr2_3:55593671-55593690	Msa0300210:CDS	30.0%
TCAAGAGATTCTTGAACATT+TGG	-	chr2_3:55593745-55593764	Msa0300210:CDS	30.0%
GGGATGAATTCATCAATTAA+AGG	+	chr2_3:55593806-55593825	None:intergenic	30.0%
AATTAACCTGGTAATTTCTC+TGG	+	chr2_3:55593866-55593885	None:intergenic	30.0%
AAAGCCAGAGAAAACAAATT+GGG	-	chr2_3:55594228-55594247	Msa0300210:CDS	30.0%
CATTATTTCCAAGATGGTAT+TGG	+	chr2_3:55594261-55594280	None:intergenic	30.0%
AATAATGAAGAGGAGAAAGA+AGG	-	chr2_3:55594274-55594293	Msa0300210:intron	30.0%
GTGGTTAATCATAAAAACAG+TGG	-	chr2_3:55594418-55594437	Msa0300210:intron	30.0%
TAACATGAAATTGTGATGCA+TGG	-	chr2_3:55594571-55594590	Msa0300210:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	55593023	55594951	55593023	ID=Msa0300210;Name=Msa0300210
chr2_3	mRNA	55593023	55594951	55593023	ID=Msa0300210-mRNA-1;Parent=Msa0300210;Name=Msa0300210-mRNA-1;_AED=0.28;_eAED=0.28;_QI=326\|1\|1\|1\|1\|1\|3\|435\|270
chr2_3	exon	55593023	55593960	55593023	ID=Msa0300210-mRNA-1:exon:17806;Parent=Msa0300210-mRNA-1
chr2_3	exon	55594096	55594288	55594096	ID=Msa0300210-mRNA-1:exon:17805;Parent=Msa0300210-mRNA-1
chr2_3	exon	55594509	55594951	55594509	ID=Msa0300210-mRNA-1:exon:17804;Parent=Msa0300210-mRNA-1
chr2_3	five_prime_UTR	55594626	55594951	55594626	ID=Msa0300210-mRNA-1:five_prime_utr;Parent=Msa0300210-mRNA-1
chr2_3	CDS	55594509	55594625	55594509	ID=Msa0300210-mRNA-1:cds;Parent=Msa0300210-mRNA-1
chr2_3	CDS	55594096	55594288	55594096	ID=Msa0300210-mRNA-1:cds;Parent=Msa0300210-mRNA-1
chr2_3	CDS	55593458	55593960	55593458	ID=Msa0300210-mRNA-1:cds;Parent=Msa0300210-mRNA-1
chr2_3	three_prime_UTR	55593023	55593457	55593023	ID=Msa0300210-mRNA-1:three_prime_utr;Parent=Msa0300210-mRNA-1

Gene Sequence

>Msa0300210

ATGACTCAGTGTAGTTACCCTGAAAATAATCATAGTACTATCCTTATGGAGAGACGCAAAGATAGCTTAATCAGAACTTGTCCTACATGTGGTCATCATATCAAATGCCAAGATCAGGGTGCTGGAATTCATGAGTTGCCTGGATTACCTGCTGGGGTGAAGTTTGATCCTACTGATCAAGAGATTCTTGAACATTTGGAAGCAAAAGTGAGGTCTGATATTCAAATGCTTCATCCTTTAATTGATGAATTCATCCCTACTCTTGAAGGAGAGAATGGAATCTGCTGTACTCATCCAGAGAAATTACCAGGTGTCGGCAAAGATGGACTGATCCGACATTTCTTTCACCGGCCATCAAAAGCATACACAACAGGAACAAGAAAAAGAAGAAAAGTGCACACAGATGCTGATGGAAGTGAAACAAGATGGCATAAAACAGGTAAAACAAGGCCAGTTTTCGTGAGTGGCAAGTTAAAAGGTTATAAGAAAATCCTTGTGCTTTACACTAACTACAGAAAGCAAAGAAAGCCAGAGAAAACAAATTGGGTTATGCACCAATACCATCTTGGAAATAATGAAGAGGAGAAAGAAGGAGAATTGGTAGTTTCCAAAGTTTTCTACCAAACACAGCCTAGACAATGTGGTGGTTCATTGATGAAAGACTCAGCATCATTTTCTGATAAAAAACTAAATAGTGATCAAGGTGTGCATGAGGTGGTTAATCATAAAAACAGTGGATTTGTTGAATACTATAGTACTTCTTTCATATCTTTTGATCAAGGGAACAACATAGATCAAACAATGCTCAAGTGA

Protein sequence

>Msa0300210

MTQCSYPENNHSTILMERRKDSLIRTCPTCGHHIKCQDQGAGIHELPGLPAGVKFDPTDQEILEHLEAKVRSDIQMLHPLIDEFIPTLEGENGICCTHPEKLPGVGKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSETRWHKTGKTRPVFVSGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGGSLMKDSASFSDKKLNSDQGVHEVVNHKNSGFVEYYSTSFISFDQGNNIDQTMLK*