AlfalfaGEDB | Msa1363810

M. sativa cultivar zhongmu-4 / Msa1363810

KEGG: -
GO: GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045893 GO:0045935 GO:0046677 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0090693 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363810	XP_013447178.1	98.061	361	7	0	1	361	1	361	0.0	738

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363810	sp\|Q8H0Y8\|WRK41_ARATH	39.669	363	143	12	6	353	5	306	2.66e-65	212

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363810	A0A072U5T4	98.061	361	7	0	1	361	1	361	0.0	738

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TFs/TRs:

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Gene ID	Type	Classification
Msa1363810	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013280	Msa1363810	0.804617	1.982389e-49	-8.615850e-47
Msa0106530	Msa1363810	0.844490	7.321623e-59	-8.615850e-47
Msa0259440	Msa1363810	0.803474	3.425878e-49	-8.615850e-47
Msa0259580	Msa1363810	0.801039	1.086700e-48	-8.615850e-47
Msa0377840	Msa1363810	0.809270	2.055794e-50	-8.615850e-47
Msa0437070	Msa1363810	0.811843	5.716347e-51	-8.615850e-47
Msa0463490	Msa1363810	0.854531	1.156894e-61	-8.615850e-47
Msa0473140	Msa1363810	0.813775	2.158325e-51	-8.615850e-47
Msa0517610	Msa1363810	0.806551	7.785124e-50	-8.615850e-47
Msa0524330	Msa1363810	0.805099	1.572225e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363810	MtrunA17_Chr8g0387981	98.061	361	7	0	1	361	1	361	0.0	738
Msa1363810	MtrunA17_Chr7g0275531	36.927	371	180	11	1	361	1	327	3.60e-57	189
Msa1363810	MtrunA17_Chr3g0126391	38.564	376	163	17	12	361	7	340	3.15e-56	187
Msa1363810	MtrunA17_Chr8g0347251	35.849	371	187	14	1	349	1	342	2.38e-51	174
Msa1363810	MtrunA17_Chr7g0244981	32.178	202	105	5	1	191	1	181	6.97e-24	99.8
Msa1363810	MtrunA17_Chr8g0334541	33.511	188	99	5	13	198	6	169	1.10e-22	96.3
Msa1363810	MtrunA17_Chr2g0315381	30.583	206	108	6	8	191	11	203	2.84e-22	95.9
Msa1363810	MtrunA17_Chr7g0244971	32.143	196	95	5	9	191	12	182	2.43e-20	90.1
Msa1363810	MtrunA17_Chr2g0315361	29.327	208	115	6	6	191	10	207	5.45e-20	89.4
Msa1363810	MtrunA17_Chr2g0315371	30.144	209	119	5	1	191	1	200	4.56e-19	86.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363810	AT4G11070.1	39.669	363	143	12	6	353	5	306	2.71e-66	212
Msa1363810	AT4G23810.1	44.912	285	119	7	5	259	7	283	1.16e-64	208
Msa1363810	AT4G11070.2	39.045	356	123	11	6	353	5	274	4.50e-63	203
Msa1363810	AT5G24110.1	39.234	209	93	7	7	205	10	194	6.40e-36	133
Msa1363810	AT2G46400.1	32.534	292	154	8	8	295	4	256	8.87e-35	129
Msa1363810	AT3G56400.1	36.464	181	102	5	12	191	11	179	2.64e-25	104
Msa1363810	AT2G40740.1	58.065	62	26	0	130	191	171	232	3.22e-20	90.1
Msa1363810	AT2G40740.3	58.065	62	26	0	130	191	180	241	4.05e-20	89.7
Msa1363810	AT2G40750.1	33.333	171	96	3	40	201	63	224	9.37e-20	89.7
Msa1363810	AT1G66550.2	35.862	145	81	4	54	191	23	162	1.20e-17	82.0

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Find 123 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCTGGAGTATTGAAA+GGG	0.560663	tig0018089:-16851	None:intergenic
AAAGGTTGCGCCCAAATGGA+TGG	0.526632	tig0018089:+16007	Msa1363810:CDS
AAATGGAGAATGAATGTAAC+TGG	0.315765	tig0018089:+15565	Msa1363810:exon
AAATTTGGATCTATTTCCAC+TGG	0.446466	tig0018089:-16828	None:intergenic
AACAACCCTCGTTCAGAATC+CGG	0.427607	tig0018089:+16732	Msa1363810:CDS
AACGCAGGAAAACCACAGCT+GGG	0.639928	tig0018089:+16578	Msa1363810:CDS
AACTTCTTGGTGATCTTGGA+AGG	0.459080	tig0018089:-15850	None:intergenic
AAGTCATTCATGTTGAAAGA+TGG	0.505789	tig0018089:-16696	None:intergenic
AATAGATTTGAAAATTCAAA+TGG	0.431973	tig0018089:-15409	None:intergenic
AATATTATTATTATGGATGT+GGG	0.437122	tig0018089:-16424	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTGCTCACTTTAAATACA+AGG	+	tig0018089:15310-15329	Msa1363810:five_prime_UTR	30.0%
GTTGGATACTGAAGAAATTT+AGG	-	tig0018089:15468-15487	None:intergenic	30.0%
AAATGGAGAATGAATGTAAC+TGG	+	tig0018089:15565-15584	Msa1363810:exon	30.0%
AATGGAGAATGAATGTAACT+GGG	+	tig0018089:15566-15585	Msa1363810:exon	30.0%
CTCATCAATGAGTTAATTCA+AGG	+	tig0018089:15600-15619	Msa1363810:CDS	30.0%
TATGGTCAAAAAGATATCCT+TGG	+	tig0018089:16098-16117	Msa1363810:CDS	30.0%
ACTTCTGCAATTGTCATAAT+GGG	-	tig0018089:16235-16254	None:intergenic	30.0%
AACTTCTGCAATTGTCATAA+TGG	-	tig0018089:16236-16255	None:intergenic	30.0%
ACAATTGCAGAAGTTACTAT+AGG	+	tig0018089:16241-16260	Msa1363810:intron	30.0%
GATGAGAAATAGTTTGATTC+TGG	-	tig0018089:16675-16694	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018089	gene	15225	17248	15225	ID=Msa1363810;Name=Msa1363810
tig0018089	mRNA	15225	17248	15225	ID=Msa1363810-mRNA-1;Parent=Msa1363810;Name=Msa1363810-mRNA-1;_AED=0.03;_eAED=0.03;_QI=342\|1\|1\|1\|1\|1\|3\|367\|361
tig0018089	exon	15225	15892	15225	ID=Msa1363810-mRNA-1:exon:13701;Parent=Msa1363810-mRNA-1
tig0018089	exon	16007	16135	16007	ID=Msa1363810-mRNA-1:exon:13702;Parent=Msa1363810-mRNA-1
tig0018089	exon	16251	17248	16251	ID=Msa1363810-mRNA-1:exon:13703;Parent=Msa1363810-mRNA-1
tig0018089	five_prime_UTR	15225	15566	15225	ID=Msa1363810-mRNA-1:five_prime_utr;Parent=Msa1363810-mRNA-1
tig0018089	CDS	15567	15892	15567	ID=Msa1363810-mRNA-1:cds;Parent=Msa1363810-mRNA-1
tig0018089	CDS	16007	16135	16007	ID=Msa1363810-mRNA-1:cds;Parent=Msa1363810-mRNA-1
tig0018089	CDS	16251	16881	16251	ID=Msa1363810-mRNA-1:cds;Parent=Msa1363810-mRNA-1
tig0018089	three_prime_UTR	16882	17248	16882	ID=Msa1363810-mRNA-1:three_prime_utr;Parent=Msa1363810-mRNA-1

Gene Sequence

>Msa1363810

ATGGAGAATGAATGTAACTGGGAGCAAAACACACTCATCAATGAGTTAATTCAAGGGATGGATGTAGCAAAGAGATTGAAAGAAGACTTGAGGACACCATATTCCCTTGGCACAAGGGATTCACAGGTGCAGATGATACTATCTTCTTATGAAAAGGCTTTACAAATTTTAAGATGTAATGAATCAACTTCTAAGTCACAGACAGTGACTCCAGTAATAACTTCGTTACCGGAATCCCCAGCGTCTACCAATGGGAGTCCTCTGAGCGAGGACTTTGATGGGACCTTCCAAGATCACCAAGAAGTTAAAAACAAATCAAAGAAAAGAAAGGTTGCGCCCAAATGGATGGATCAGATAAGAGTGAGCTGTGACAGTAGCCTTGAAGGACCAAATGAAGATGGCTACAACTGGAGAAAATATGGTCAAAAAGATATCCTTGGCACCAAACATCCAAGAAGTTACTATAGGTGCACCTTCCGCAACACACAGGACTGCTGGGCGACGAAGCAAGTGCAGAGATCAGATGAAGATCCGACAATATTTGACATAACTTATAGAGGAAAGCATACATGTTCTCAGGGAAACAATGCCATTGAGCCATATAAGTCACAAGAAAAACAAGAGAAACCCCACATCCATAATAATAATATTATTCACCATGCACAACAATCACAAGAAAGCTTTACAAATTTCAGCAACACCTTGACTGTGAAAACAGATAACCTGGGAAACGAAGAAATGACATGTCCTTTCACCTTCCCTTCCACTTCATATGGGTACACAACGCAGGAAAACCACAGCTGGGTTCCGCCAGCCTTAGAAAACGATTCCTTCTTGAGCAGTCTTTTCCAGACACACTTATTATCTCCAGCAACACCAGAATCAAACTATTTCTCATCTCCATCTTTCAACATGAATGACTTTGATGGGTTCTATAACAACCCTCGTTCAGAATCCGGCATTACGGAGATCATTTCCACCAATACATCAGTAACAAATTCTCCTATTCCCAATTTCCGTTTCCCACTTGATCCAGTGGAAATAGATCCAAATTTCCCTTTCAATACTCCAGGCTTTTTCTCCTAA

Protein sequence

>Msa1363810

MENECNWEQNTLINELIQGMDVAKRLKEDLRTPYSLGTRDSQVQMILSSYEKALQILRCNESTSKSQTVTPVITSLPESPASTNGSPLSEDFDGTFQDHQEVKNKSKKRKVAPKWMDQIRVSCDSSLEGPNEDGYNWRKYGQKDILGTKHPRSYYRCTFRNTQDCWATKQVQRSDEDPTIFDITYRGKHTCSQGNNAIEPYKSQEKQEKPHIHNNNIIHHAQQSQESFTNFSNTLTVKTDNLGNEEMTCPFTFPSTSYGYTTQENHSWVPPALENDSFLSSLFQTHLLSPATPESNYFSSPSFNMNDFDGFYNNPRSESGITEIISTNTSVTNSPIPNFRFPLDPVEIDPNFPFNTPGFFS*