AlfalfaGEDB | Msa0559800

M. sativa cultivar zhongmu-4 / Msa0559800

KEGG: -
GO: -
PFAM: PF06747.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559800	XP_003608406.2	98.582	141	2	0	1	141	1	141	8.54e-96	282

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559800	G7JV55	98.582	141	2	0	1	141	1	141	4.08e-96	282

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0362450	Msa0559800	-0.805242	1.467441e-49	-8.615850e-47
Msa0559800	Msa0810360	0.819083	1.399211e-52	-8.615850e-47
Msa0559800	Msa0901020	-0.806261	8.964480e-50	-8.615850e-47
Msa0559800	Msa0967280	-0.829127	6.124258e-55	-8.615850e-47
Msa0559800	Msa1241130	0.808860	2.516798e-50	-8.615850e-47
Msa0559800	Msa1279690	0.807918	3.997542e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559800	MtrunA17_Chr4g0049721	98.582	141	2	0	1	141	1	141	7.85e-100	282
Msa0559800	MtrunA17_Chr2g0279691	54.167	120	45	3	25	137	47	163	5.22e-30	106
Msa0559800	MtrunA17_Chr2g0279681	51.351	74	26	2	50	113	2	75	2.06e-12	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559800	AT5G09570.1	57.639	144	49	3	1	139	1	137	7.32e-53	164
Msa0559800	AT5G64400.1	72.043	93	24	1	47	139	52	142	3.80e-38	127
Msa0559800	AT5G64400.3	72.857	70	17	1	40	109	1	68	1.23e-22	86.7
Msa0559800	AT5G64400.2	71.429	63	16	1	47	109	52	112	1.92e-17	74.3

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Find 72 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAAGGAGTAATAATCG+CGG	0.726372	4_1:+58980561	None:intergenic
AAAGAGCTTGAAGTCGGTGC+AGG	0.533911	4_1:+58979261	None:intergenic
AAATCAAAACATGCTAAACC+AGG	0.561285	4_1:+58978056	None:intergenic
AACCCTAGAAAACTTGGAAA+TGG	0.396000	4_1:+58980619	None:intergenic
AACTACTGCTTCATGTTGAA+TGG	0.473377	4_1:+58979305	None:intergenic
AAGATCCGGTATAAACGAAT+GGG	0.516747	4_1:-58980662	Msa0559800:five_prime_UTR
AAGATTGGATAACATCCGTA+GGG	0.637112	4_1:-58977865	Msa0559800:three_prime_UTR
AATAAGTCTTTAGCACCCTA+CGG	0.602221	4_1:+58977850	None:intergenic
AATCAAAACATGCTAAACCA+GGG	0.666601	4_1:+58978057	None:intergenic
AATCCTCAGAGTGGTGGCGG+CGG	0.582840	4_1:-58979512	Msa0559800:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTAGAAGCTGAAAAAACGA+AGG	+	chr4_1:58977895-58977914	None:intergenic	30.0%
AAAGAAAACCCTAGAAAAGA+TGG	+	chr4_1:58978087-58978106	None:intergenic	30.0%
ATTCATAACTTCCCATAATC+GGG	+	chr4_1:58978221-58978240	None:intergenic	30.0%
GATTCATAACTTCCCATAAT+CGG	+	chr4_1:58978222-58978241	None:intergenic	30.0%
CACGAAGAAAGAAAACAATA+GGG	+	chr4_1:58978687-58978706	None:intergenic	30.0%
ACACGAAGAAAGAAAACAAT+AGG	+	chr4_1:58978688-58978707	None:intergenic	30.0%
ATTTCAATTTATGGCAGGTA+TGG	-	chr4_1:58979051-58979070	Msa0559800:intron	30.0%
TGCATGCAATATTCATTCAA+AGG	-	chr4_1:58979210-58979229	Msa0559800:intron	30.0%
TTATTGCTTGAAATTCCTGT+TGG	-	chr4_1:58979266-58979285	Msa0559800:CDS	30.0%
TACTGTAAAGTCTTTCAAAC+TGG	+	chr4_1:58979539-58979558	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	58977773	58980688	58977773	ID=Msa0559800;Name=Msa0559800
chr4_1	mRNA	58977773	58980688	58977773	ID=Msa0559800-mRNA-1;Parent=Msa0559800;Name=Msa0559800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=159\|1\|1\|1\|0.8\|0.66\|6\|491\|141
chr4_1	exon	58977773	58978362	58977773	ID=Msa0559800-mRNA-1:exon:18124;Parent=Msa0559800-mRNA-1
chr4_1	exon	58979218	58979393	58979218	ID=Msa0559800-mRNA-1:exon:18123;Parent=Msa0559800-mRNA-1
chr4_1	exon	58979477	58979557	58979477	ID=Msa0559800-mRNA-1:exon:18122;Parent=Msa0559800-mRNA-1
chr4_1	exon	58979704	58979751	58979704	ID=Msa0559800-mRNA-1:exon:18121;Parent=Msa0559800-mRNA-1
chr4_1	exon	58980478	58980510	58980478	ID=Msa0559800-mRNA-1:exon:18120;Parent=Msa0559800-mRNA-1
chr4_1	exon	58980541	58980688	58980541	ID=Msa0559800-mRNA-1:exon:18119;Parent=Msa0559800-mRNA-1
chr4_1	five_prime_UTR	58980541	58980688	58980541	ID=Msa0559800-mRNA-1:five_prime_utr;Parent=Msa0559800-mRNA-1
chr4_1	five_prime_UTR	58980500	58980510	58980500	ID=Msa0559800-mRNA-1:five_prime_utr;Parent=Msa0559800-mRNA-1
chr4_1	CDS	58980478	58980499	58980478	ID=Msa0559800-mRNA-1:cds;Parent=Msa0559800-mRNA-1
chr4_1	CDS	58979704	58979751	58979704	ID=Msa0559800-mRNA-1:cds;Parent=Msa0559800-mRNA-1
chr4_1	CDS	58979477	58979557	58979477	ID=Msa0559800-mRNA-1:cds;Parent=Msa0559800-mRNA-1
chr4_1	CDS	58979218	58979393	58979218	ID=Msa0559800-mRNA-1:cds;Parent=Msa0559800-mRNA-1
chr4_1	CDS	58978264	58978362	58978264	ID=Msa0559800-mRNA-1:cds;Parent=Msa0559800-mRNA-1
chr4_1	three_prime_UTR	58977773	58978263	58977773	ID=Msa0559800-mRNA-1:three_prime_utr;Parent=Msa0559800-mRNA-1

Gene Sequence

>Msa0559800

ATGGCACGCCGTAGCTCCGGAGGAAGATCTGCTCGTCCAGCTCCACGTGCTGCACCACGTCCTGCTCCAGTTAACCGCGCTCCTCCTCCAGCTAATCCTCAGAGTGGTGGCGGCGGTATGCTTAGTGGCATTGGTTCAACCATTGCTCAAGGTATGGCTTTTGGGACTGGAAGTGCAATGGCACACAGGGCCGTGGATGCTGTTGTGGGTCCTCGCACCATTCAACATGAAGCAGTAGTTAATGAGGCTGCTGCAGCTGCTCCTGCACCGACTTCAAGCTCTTTTGGCAGTGATGCATGCAATATTCATTCAAAGGCATTCCAAGATTGCATCAACCACTACGGAACTGAGATCAGCAAGTGCCAGTTTTACATGGATATGCTAGCCGAGTGCAAAAAGAACTCTGGAGCCACAATGAGTATGTAA

Protein sequence

>Msa0559800

MARRSSGGRSARPAPRAAPRPAPVNRAPPPANPQSGGGGMLSGIGSTIAQGMAFGTGSAMAHRAVDAVVGPRTIQHEAVVNEAAAAAPAPTSSSFGSDACNIHSKAFQDCINHYGTEISKCQFYMDMLAECKKNSGATMSM*