Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559800 | XP_003608406.2 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 8.54e-96 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559800 | G7JV55 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 4.08e-96 | 282 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0362450 | Msa0559800 | -0.805242 | 1.467441e-49 | -8.615850e-47 |
| Msa0559800 | Msa0810360 | 0.819083 | 1.399211e-52 | -8.615850e-47 |
| Msa0559800 | Msa0901020 | -0.806261 | 8.964480e-50 | -8.615850e-47 |
| Msa0559800 | Msa0967280 | -0.829127 | 6.124258e-55 | -8.615850e-47 |
| Msa0559800 | Msa1241130 | 0.808860 | 2.516798e-50 | -8.615850e-47 |
| Msa0559800 | Msa1279690 | 0.807918 | 3.997542e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559800 | MtrunA17_Chr4g0049721 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 7.85e-100 | 282 |
| Msa0559800 | MtrunA17_Chr2g0279691 | 54.167 | 120 | 45 | 3 | 25 | 137 | 47 | 163 | 5.22e-30 | 106 |
| Msa0559800 | MtrunA17_Chr2g0279681 | 51.351 | 74 | 26 | 2 | 50 | 113 | 2 | 75 | 2.06e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559800 | AT5G09570.1 | 57.639 | 144 | 49 | 3 | 1 | 139 | 1 | 137 | 7.32e-53 | 164 |
| Msa0559800 | AT5G64400.1 | 72.043 | 93 | 24 | 1 | 47 | 139 | 52 | 142 | 3.80e-38 | 127 |
| Msa0559800 | AT5G64400.3 | 72.857 | 70 | 17 | 1 | 40 | 109 | 1 | 68 | 1.23e-22 | 86.7 |
| Msa0559800 | AT5G64400.2 | 71.429 | 63 | 16 | 1 | 47 | 109 | 52 | 112 | 1.92e-17 | 74.3 |
Find 72 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAGACAAATAAAATTTAT+TGG | 0.160648 | 4_1:+58978157 | None:intergenic |
| TTTATGGCAGGTATGGCTTT+TGG | 0.258248 | 4_1:-58979381 | Msa0559800:intron |
| GCACCGACTTCAAGCTCTTT+TGG | 0.290138 | 4_1:-58979258 | Msa0559800:CDS |
| TTCTTTAAACATCTGAAGAT+TGG | 0.314777 | 4_1:-58977880 | Msa0559800:three_prime_UTR |
| ACCTTGTGAAAGTTAAGTTT+TGG | 0.320673 | 4_1:+58977803 | None:intergenic |
| TAACTGCTCTAGGCATGTTT+TGG | 0.334364 | 4_1:-58978244 | Msa0559800:three_prime_UTR |
| AGAAAACTTGGAAATGGTCT+TGG | 0.392994 | 4_1:+58980625 | None:intergenic |
| AACCCTAGAAAACTTGGAAA+TGG | 0.396000 | 4_1:+58980619 | None:intergenic |
| CTAGCATATCCATGTAAAAC+TGG | 0.399015 | 4_1:+58978305 | None:intergenic |
| GGCGGTATGCTTAGTGGCAT+TGG | 0.424555 | 4_1:-58979494 | Msa0559800:CDS |
| CTGCTAATAAAGACGGCAAT+AGG | 0.432341 | 4_1:+58978005 | None:intergenic |
| GTTGGTCTGGATTGACTTTG+TGG | 0.434691 | 4_1:+58977978 | None:intergenic |
| TATATTCTATGAAGTTGGTC+TGG | 0.441285 | 4_1:+58977965 | None:intergenic |
| TATTTAAACCCTAGAAAACT+TGG | 0.442628 | 4_1:+58980613 | None:intergenic |
| CAGGGCCGTGGATGCTGTTG+TGG | 0.451033 | 4_1:-58979337 | Msa0559800:CDS |
| GGTGGCGGCGGTATGCTTAG+TGG | 0.466010 | 4_1:-58979500 | Msa0559800:CDS |
| ACCATGGCACGCCGTAGCTC+CGG | 0.466038 | 4_1:-58980480 | Msa0559800:CDS |
| GAAAACTTGGAAATGGTCTT+GGG | 0.469304 | 4_1:+58980626 | None:intergenic |
| CCACCACTCTGAGGATTAGC+TGG | 0.472443 | 4_1:+58979518 | None:intergenic |
| AACTACTGCTTCATGTTGAA+TGG | 0.473377 | 4_1:+58979305 | None:intergenic |
| TGCAATGGCACACAGGGCCG+TGG | 0.474780 | 4_1:-58979349 | Msa0559800:CDS |
| GTTTGTTACTCTGTCTAAGA+TGG | 0.478212 | 4_1:-58978212 | Msa0559800:three_prime_UTR |
| CGTGGTGCAGCACGTGGAGC+TGG | 0.485293 | 4_1:+58979715 | None:intergenic |
| GTGTTCCCATTCGTTTATAC+CGG | 0.493083 | 4_1:+58980657 | None:intergenic |
| GCAAGTATATTCTATGAAGT+TGG | 0.493959 | 4_1:+58977960 | None:intergenic |
| TTCATAGAATATACTTGCTG+TGG | 0.505655 | 4_1:-58977955 | Msa0559800:three_prime_UTR |
| AATGAGTATGTAACTGCTCT+AGG | 0.511721 | 4_1:-58978254 | Msa0559800:exon |
| AAGATCCGGTATAAACGAAT+GGG | 0.516747 | 4_1:-58980662 | Msa0559800:five_prime_UTR |
| GCTGCACCACGTCCTGCTCC+AGG | 0.519152 | 4_1:-58979703 | Msa0559800:intron |
| TCCGGAGCTACGGCGTGCCA+TGG | 0.527864 | 4_1:+58980479 | None:intergenic |
| TAAGATCCGGTATAAACGAA+TGG | 0.531946 | 4_1:-58980663 | Msa0559800:five_prime_UTR |
| TAGATTATTCGAGTAAGATC+CGG | 0.533042 | 4_1:-58980676 | None:intergenic |
| AAAGAGCTTGAAGTCGGTGC+AGG | 0.533911 | 4_1:+58979261 | None:intergenic |
| CTCTGAGGATTAGCTGGAGG+AGG | 0.538286 | 4_1:+58979524 | None:intergenic |
| CTAATAAAGACGGCAATAGG+AGG | 0.552348 | 4_1:+58978008 | None:intergenic |
| AGGACCCACAACAGCATCCA+CGG | 0.556091 | 4_1:+58979332 | None:intergenic |
| GCTAATCCTCAGAGTGGTGG+CGG | 0.558257 | 4_1:-58979515 | Msa0559800:CDS |
| GCAGGACGTGGTGCAGCACG+TGG | 0.561238 | 4_1:+58979709 | None:intergenic |
| AAATCAAAACATGCTAAACC+AGG | 0.561285 | 4_1:+58978056 | None:intergenic |
| TGCATGCAATATTCATTCAA+AGG | 0.562704 | 4_1:-58979229 | Msa0559800:CDS |
| AGGGCCGTGGATGCTGTTGT+GGG | 0.564421 | 4_1:-58979336 | Msa0559800:CDS |
| TGGAAGTGCAATGGCACACA+GGG | 0.567260 | 4_1:-58979355 | Msa0559800:CDS |
| GAACGTTACCTCCGGAGCTA+CGG | 0.573066 | 4_1:+58980469 | None:intergenic |
| CATTAATATATACCTGGAGC+AGG | 0.580772 | 4_1:+58979691 | None:intergenic |
| TAGAATATACTTGCTGTGGG+TGG | 0.581323 | 4_1:-58977951 | Msa0559800:three_prime_UTR |
| ACATGAAGCAGTAGTTAATG+AGG | 0.581873 | 4_1:-58979298 | Msa0559800:CDS |
| AATCCTCAGAGTGGTGGCGG+CGG | 0.582840 | 4_1:-58979512 | Msa0559800:CDS |
| TATATACCTGGAGCAGGACG+TGG | 0.583895 | 4_1:+58979697 | None:intergenic |
| TCATAGAATATACTTGCTGT+GGG | 0.585331 | 4_1:-58977954 | Msa0559800:three_prime_UTR |
| ATTGGTTCAACCATTGCTCA+AGG | 0.588907 | 4_1:-58979476 | Msa0559800:intron |
| CTGGAAGTGCAATGGCACAC+AGG | 0.589957 | 4_1:-58979356 | Msa0559800:CDS |
| GATGGATACAACTGCTTGTG+TGG | 0.592085 | 4_1:-58978194 | Msa0559800:three_prime_UTR |
| GCCCTAATCTTCGACAACCA+TGG | 0.595522 | 4_1:-58980496 | Msa0559800:intron |
| GCTTGACATACCTTGAGCAA+TGG | 0.600932 | 4_1:+58979466 | None:intergenic |
| CCCAAAACTTAACTTTCACA+AGG | 0.602043 | 4_1:-58977804 | Msa0559800:three_prime_UTR |
| AATAAGTCTTTAGCACCCTA+CGG | 0.602221 | 4_1:+58977850 | None:intergenic |
| ATGGCACGCCGTAGCTCCGG+AGG | 0.604368 | 4_1:-58980477 | Msa0559800:intron |
| TGCTGATCTCAGTTCCGTAG+TGG | 0.607249 | 4_1:+58978332 | None:intergenic |
| TGGACAGCTGCTAATAAAGA+CGG | 0.613721 | 4_1:+58977998 | None:intergenic |
| GAAGATTGGATAACATCCGT+AGG | 0.615057 | 4_1:-58977866 | Msa0559800:three_prime_UTR |
| CCAGCTAATCCTCAGAGTGG+TGG | 0.634085 | 4_1:-58979518 | Msa0559800:CDS |
| AAGATTGGATAACATCCGTA+GGG | 0.637112 | 4_1:-58977865 | Msa0559800:three_prime_UTR |
| CTGCCAAAAGAGCTTGAAGT+CGG | 0.641855 | 4_1:+58979255 | None:intergenic |
| TTGCAGTGCATCAACCACTA+CGG | 0.648457 | 4_1:-58978346 | Msa0559800:intron |
| GAGCAGTTACATACTCATTG+TGG | 0.664410 | 4_1:+58978258 | None:intergenic |
| AATCAAAACATGCTAAACCA+GGG | 0.666601 | 4_1:+58978057 | None:intergenic |
| CCACTCTGAGGATTAGCTGG+AGG | 0.669248 | 4_1:+58979521 | None:intergenic |
| CCTCCAGCTAATCCTCAGAG+TGG | 0.682091 | 4_1:-58979521 | Msa0559800:CDS |
| ATACCGCCGCCACCACTCTG+AGG | 0.688047 | 4_1:+58979509 | None:intergenic |
| GATTAGCTGGAGGAGGAGCG+CGG | 0.689214 | 4_1:+58979531 | None:intergenic |
| AAACGAAGGAGTAATAATCG+CGG | 0.726372 | 4_1:+58980561 | None:intergenic |
| GCTTCATGTTGAATGGTGCG+AGG | 0.729803 | 4_1:+58979312 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATTATAACGATAAT+AGG | + | chr4_1:58978033-58978052 | None:intergenic | 10.0% |
| !! | CAATCTAAATAAAAAAATTA+GGG | + | chr4_1:58978362-58978381 | None:intergenic | 10.0% |
| !! | TCAATCTAAATAAAAAAATT+AGG | + | chr4_1:58978363-58978382 | None:intergenic | 10.0% |
| !!! | TTTTGAAAAATTGTGTATTT+TGG | - | chr4_1:58978128-58978147 | Msa0559800:three_prime_UTR | 15.0% |
| !!! | TTTATTTTAAATTGCTGTAT+TGG | - | chr4_1:58978302-58978321 | Msa0559800:CDS | 15.0% |
| !!! | TTATTTTAAATTGCTGTATT+GGG | - | chr4_1:58978303-58978322 | Msa0559800:CDS | 15.0% |
| !! | AAATCTTAAATAGTAGTTAT+TGG | - | chr4_1:58979292-58979311 | Msa0559800:CDS | 15.0% |
| !!! | TGATTTTTTTTCAATTATTG+TGG | - | chr4_1:58980400-58980419 | Msa0559800:intron | 15.0% |
| !! | AATACAACATAAAACTGAAA+GGG | + | chr4_1:58978056-58978075 | None:intergenic | 20.0% |
| !! | AAATACAACATAAAACTGAA+AGG | + | chr4_1:58978057-58978076 | None:intergenic | 20.0% |
| !! | GTTATAGTTTATTAGGTTAT+TGG | - | chr4_1:58978483-58978502 | Msa0559800:intron | 20.0% |
| !! | AATAAAAGTAAACCATTCAT+TGG | + | chr4_1:58978632-58978651 | None:intergenic | 20.0% |
| !! | ATACTACATTAATATATACC+TGG | + | chr4_1:58978757-58978776 | None:intergenic | 20.0% |
| !! | TTGTCTAAATAAGATATTGT+GGG | - | chr4_1:58978837-58978856 | Msa0559800:intron | 20.0% |
| !!! | TGAATGAAATTTTCATTTTC+TGG | - | chr4_1:58979017-58979036 | Msa0559800:intron | 20.0% |
| !! | TGGTACTAAATTTCAATTTA+TGG | - | chr4_1:58979042-58979061 | Msa0559800:intron | 20.0% |
| !!! | TATTTAAGATTTAAACCAAC+AGG | + | chr4_1:58979284-58979303 | None:intergenic | 20.0% |
| !!! | AGTTGAAAACAAATCTTTTA+AGG | + | chr4_1:58979377-58979396 | None:intergenic | 20.0% |
| !!! | CTGTTTCTTTTATTTTTGTA+AGG | - | chr4_1:58979764-58979783 | Msa0559800:intron | 20.0% |
| !! | ATAATTAAGATCATAGTTGT+TGG | + | chr4_1:58979793-58979812 | None:intergenic | 20.0% |
| !! | AATTGTGTTTGTATTCATAT+TGG | - | chr4_1:58979832-58979851 | Msa0559800:intron | 20.0% |
| !!! | TCCAATAAATTTTATTTGTC+TGG | - | chr4_1:58980281-58980300 | Msa0559800:intron | 20.0% |
| !! | ACCAGACAAATAAAATTTAT+TGG | + | chr4_1:58980285-58980304 | None:intergenic | 20.0% |
| !!! | ATTGATACTTGAAAGTTTTT+TGG | - | chr4_1:58980349-58980368 | Msa0559800:intron | 20.0% |
| ! | TATTTAAACCCTAGAAAACT+TGG | + | chr4_1:58977829-58977848 | None:intergenic | 25.0% |
| !!! | TCAGATCTGCTTTATTATTT+TGG | - | chr4_1:58977998-58978017 | Msa0559800:three_prime_UTR | 25.0% |
| ! | GCTAAAATAACTACGAAAAA+TGG | + | chr4_1:58978187-58978206 | None:intergenic | 25.0% |
| ! | GCAAAGCAAAAAATATCTAA+AGG | + | chr4_1:58978261-58978280 | None:intergenic | 25.0% |
| ! | ATAAAAAAAACAGATATCCC+AGG | + | chr4_1:58978287-58978306 | None:intergenic | 25.0% |
| ! | TGTGTATTCAATACTTGATA+TGG | - | chr4_1:58978412-58978431 | Msa0559800:intron | 25.0% |
| ! | TAATGTTATGATAATAGCTC+TGG | - | chr4_1:58978459-58978478 | Msa0559800:intron | 25.0% |
| !!! | CAAAGTGAAATTTTGATTGT+TGG | - | chr4_1:58978547-58978566 | Msa0559800:intron | 25.0% |
| !! | CAATATCTTATTTAGACAAC+AGG | + | chr4_1:58978836-58978855 | None:intergenic | 25.0% |
| ! | GTTGTCTAAATAAGATATTG+TGG | - | chr4_1:58978836-58978855 | Msa0559800:intron | 25.0% |
| !!! | GAAATTTTCATTTTCTGGTT+TGG | - | chr4_1:58979022-58979041 | Msa0559800:intron | 25.0% |
| ! | ACTAAATTTCAATTTATGGC+AGG | - | chr4_1:58979046-58979065 | Msa0559800:intron | 25.0% |
| !!! | GATTTGTTTTCAACTTTGAA+AGG | - | chr4_1:58979382-58979401 | Msa0559800:intron | 25.0% |
| !!! | TCTTCTAATGTTTTGAAAAC+CGG | - | chr4_1:58979422-58979441 | Msa0559800:intron | 25.0% |
| ! | TACTGTAAAATCTTTCAAAG+TGG | + | chr4_1:58979679-58979698 | None:intergenic | 25.0% |
| ! | AAAATTTCTCAATGACAACA+AGG | + | chr4_1:58980028-58980047 | None:intergenic | 25.0% |
| ! | TTCTTTAAACATCTGAAGAT+TGG | - | chr4_1:58980559-58980578 | Msa0559800:five_prime_UTR | 25.0% |
| TTTAGAAGCTGAAAAAACGA+AGG | + | chr4_1:58977895-58977914 | None:intergenic | 30.0% | |
| AAAGAAAACCCTAGAAAAGA+TGG | + | chr4_1:58978087-58978106 | None:intergenic | 30.0% | |
| ATTCATAACTTCCCATAATC+GGG | + | chr4_1:58978221-58978240 | None:intergenic | 30.0% | |
| GATTCATAACTTCCCATAAT+CGG | + | chr4_1:58978222-58978241 | None:intergenic | 30.0% | |
| !!! | TATTTTTTGCTTTGCATTCC+TGG | - | chr4_1:58978266-58978285 | Msa0559800:CDS | 30.0% |
| !!! | ATTTTTTGCTTTGCATTCCT+GGG | - | chr4_1:58978267-58978286 | Msa0559800:CDS | 30.0% |
| !! | CTCTGGAGTTATAGTTTATT+AGG | - | chr4_1:58978476-58978495 | Msa0559800:intron | 30.0% |
| !!! | GTGAAATTTTGATTGTTGGT+TGG | - | chr4_1:58978551-58978570 | Msa0559800:intron | 30.0% |
| !! | ATAACAATAAAAGAAGCACC+AGG | + | chr4_1:58978660-58978679 | None:intergenic | 30.0% |
| CACGAAGAAAGAAAACAATA+GGG | + | chr4_1:58978687-58978706 | None:intergenic | 30.0% | |
| ACACGAAGAAAGAAAACAAT+AGG | + | chr4_1:58978688-58978707 | None:intergenic | 30.0% | |
| ! | ATTGTTTTCTTTCTTCGTGT+AGG | - | chr4_1:58978688-58978707 | Msa0559800:intron | 30.0% |
| ATTTCAATTTATGGCAGGTA+TGG | - | chr4_1:58979051-58979070 | Msa0559800:intron | 30.0% | |
| TGCATGCAATATTCATTCAA+AGG | - | chr4_1:58979210-58979229 | Msa0559800:intron | 30.0% | |
| TTATTGCTTGAAATTCCTGT+TGG | - | chr4_1:58979266-58979285 | Msa0559800:CDS | 30.0% | |
| TACTGTAAAGTCTTTCAAAC+TGG | + | chr4_1:58979539-58979558 | None:intergenic | 30.0% | |
| ! | TCATTTAAGATCATAGCTGT+TGG | + | chr4_1:58979648-58979667 | None:intergenic | 30.0% |
| AATCAAAACATGCTAAACCA+GGG | + | chr4_1:58980385-58980404 | None:intergenic | 30.0% | |
| AAATCAAAACATGCTAAACC+AGG | + | chr4_1:58980386-58980405 | None:intergenic | 30.0% | |
| ! | TATATTCTATGAAGTTGGTC+TGG | + | chr4_1:58980477-58980496 | None:intergenic | 30.0% |
| GCAAGTATATTCTATGAAGT+TGG | + | chr4_1:58980482-58980501 | None:intergenic | 30.0% | |
| ! | TTCATAGAATATACTTGCTG+TGG | - | chr4_1:58980484-58980503 | Msa0559800:exon | 30.0% |
| !! | TCATAGAATATACTTGCTGT+GGG | - | chr4_1:58980485-58980504 | Msa0559800:exon | 30.0% |
| ! | CCTTGTGAAAGTTAAGTTTT+GGG | + | chr4_1:58980638-58980657 | None:intergenic | 30.0% |
| ! | ACCTTGTGAAAGTTAAGTTT+TGG | + | chr4_1:58980639-58980658 | None:intergenic | 30.0% |
| TAAGATCCGGTATAAACGAA+TGG | - | chr4_1:58977776-58977795 | Msa0559800:three_prime_UTR | 35.0% | |
| AAGATCCGGTATAAACGAAT+GGG | - | chr4_1:58977777-58977796 | Msa0559800:three_prime_UTR | 35.0% | |
| GAAAACTTGGAAATGGTCTT+GGG | + | chr4_1:58977816-58977835 | None:intergenic | 35.0% | |
| AGAAAACTTGGAAATGGTCT+TGG | + | chr4_1:58977817-58977836 | None:intergenic | 35.0% | |
| ! | AGACCATTTCCAAGTTTTCT+AGG | - | chr4_1:58977817-58977836 | Msa0559800:three_prime_UTR | 35.0% |
| ! | GACCATTTCCAAGTTTTCTA+GGG | - | chr4_1:58977818-58977837 | Msa0559800:three_prime_UTR | 35.0% |
| AACCCTAGAAAACTTGGAAA+TGG | + | chr4_1:58977823-58977842 | None:intergenic | 35.0% | |
| AAACGAAGGAGTAATAATCG+CGG | + | chr4_1:58977881-58977900 | None:intergenic | 35.0% | |
| ! | TTTCGCATACCATCTTTTCT+AGG | - | chr4_1:58978075-58978094 | Msa0559800:three_prime_UTR | 35.0% |
| ! | TTCGCATACCATCTTTTCTA+GGG | - | chr4_1:58978076-58978095 | Msa0559800:three_prime_UTR | 35.0% |
| TTCATAACTTCCCATAATCG+GGG | + | chr4_1:58978220-58978239 | None:intergenic | 35.0% | |
| !! | TGTATTGGGTTGTTTTGTTG+TGG | - | chr4_1:58978317-58978336 | Msa0559800:CDS | 35.0% |
| !! | GATTTGTTGATGCATGTGTT+TGG | - | chr4_1:58978434-58978453 | Msa0559800:intron | 35.0% |
| !! | GTTGGTTGGTTTGATCAATA+TGG | - | chr4_1:58978565-58978584 | Msa0559800:intron | 35.0% |
| !! | TTCATTGGTTCACTTGAGAT+CGG | + | chr4_1:58978617-58978636 | None:intergenic | 35.0% |
| ATCTCAAGTGAACCAATGAA+TGG | - | chr4_1:58978617-58978636 | Msa0559800:intron | 35.0% | |
| !! | GTTTACTTTTATTCTCTGCC+TGG | - | chr4_1:58978639-58978658 | Msa0559800:intron | 35.0% |
| CATTAATATATACCTGGAGC+AGG | + | chr4_1:58978751-58978770 | None:intergenic | 35.0% | |
| AACTACTGCTTCATGTTGAA+TGG | + | chr4_1:58979137-58979156 | None:intergenic | 35.0% | |
| ACATGAAGCAGTAGTTAATG+AGG | - | chr4_1:58979141-58979160 | Msa0559800:intron | 35.0% | |
| GAGGAAAACAACATACATCT+TGG | + | chr4_1:58979240-58979259 | None:intergenic | 35.0% | |
| !!! | TGTATGTTGTTTTCCTCGTT+CGG | - | chr4_1:58979243-58979262 | Msa0559800:CDS | 35.0% |
| !!! | GCTGTTGGTTTTCTTTCAAA+AGG | + | chr4_1:58979490-58979509 | None:intergenic | 35.0% |
| ! | TTTGAGATCATCATAGCTGT+TGG | + | chr4_1:58979505-58979524 | None:intergenic | 35.0% |
| AAGCCTGCAAATACTATAAC+AGG | - | chr4_1:58979581-58979600 | Msa0559800:intron | 35.0% | |
| ! | TATGACCTTGCCTTTGTTAT+TGG | - | chr4_1:58979891-58979910 | Msa0559800:intron | 35.0% |
| !! | ATGACCTTGCCTTTGTTATT+GGG | - | chr4_1:58979892-58979911 | Msa0559800:intron | 35.0% |
| GTTAACAGTCCCAATAACAA+AGG | + | chr4_1:58979904-58979923 | None:intergenic | 35.0% | |
| CTAGCATATCCATGTAAAAC+TGG | + | chr4_1:58980137-58980156 | None:intergenic | 35.0% | |
| AATGAGTATGTAACTGCTCT+AGG | - | chr4_1:58980185-58980204 | Msa0559800:intron | 35.0% | |
| ! | GTTTGTTACTCTGTCTAAGA+TGG | - | chr4_1:58980227-58980246 | Msa0559800:intron | 35.0% |
| AAGATTGGATAACATCCGTA+GGG | - | chr4_1:58980574-58980593 | Msa0559800:five_prime_UTR | 35.0% | |
| AATAAGTCTTTAGCACCCTA+CGG | + | chr4_1:58980592-58980611 | None:intergenic | 35.0% | |
| CCCAAAACTTAACTTTCACA+AGG | - | chr4_1:58980635-58980654 | Msa0559800:five_prime_UTR | 35.0% | |
| GTGTTCCCATTCGTTTATAC+CGG | + | chr4_1:58977785-58977804 | None:intergenic | 40.0% | |
| !!! | GAGTGTTTTTAGGGTGCAAA+TGG | + | chr4_1:58977854-58977873 | None:intergenic | 40.0% |
| !! | CGCGGAATAGAGTGTTTTTA+GGG | + | chr4_1:58977863-58977882 | None:intergenic | 40.0% |
| !! | TCGCGGAATAGAGTGTTTTT+AGG | + | chr4_1:58977864-58977883 | None:intergenic | 40.0% |
| ATTAGGGCAAAGACGCAAAT+GGG | + | chr4_1:58977931-58977950 | None:intergenic | 40.0% | |
| TGATTCTCTTCCCCGATTAT+GGG | - | chr4_1:58978207-58978226 | Msa0559800:three_prime_UTR | 40.0% | |
| !! | ATTGGGTTGTTTTGTTGTGG+AGG | - | chr4_1:58978320-58978339 | Msa0559800:CDS | 40.0% |
| !! | GCTTTCGTGTTTTTCAGCAA+AGG | + | chr4_1:58978795-58978814 | None:intergenic | 40.0% |
| ! | ATTGGTTCAACCATTGCTCA+AGG | - | chr4_1:58978963-58978982 | Msa0559800:intron | 40.0% |
| ! | TTTATGGCAGGTATGGCTTT+TGG | - | chr4_1:58979058-58979077 | Msa0559800:intron | 40.0% |
| ! | TTATGGCAGGTATGGCTTTT+GGG | - | chr4_1:58979059-58979078 | Msa0559800:intron | 40.0% |
| TTTCAAGCAATAACCGAACG+AGG | + | chr4_1:58979259-58979278 | None:intergenic | 40.0% | |
| AAACCGGCAAACACTATAAC+AGG | - | chr4_1:58979438-58979457 | Msa0559800:intron | 40.0% | |
| CAGCCTGTTATAGTATTTGC+AGG | + | chr4_1:58979587-58979606 | None:intergenic | 40.0% | |
| ACAGGCTGCTAACATTGATA+TGG | - | chr4_1:58979599-58979618 | Msa0559800:intron | 40.0% | |
| AAACCAACAGACGCTATAAC+AGG | - | chr4_1:58979722-58979741 | Msa0559800:CDS | 40.0% | |
| ! | TCCAGAGTTCTTTTTGCACT+CGG | + | chr4_1:58980160-58980179 | None:intergenic | 40.0% |
| GAGCAGTTACATACTCATTG+TGG | + | chr4_1:58980184-58980203 | None:intergenic | 40.0% | |
| !! | TAACTGCTCTAGGCATGTTT+TGG | - | chr4_1:58980195-58980214 | Msa0559800:intron | 40.0% |
| !! | TTTTTGGTCTCAAACTTCCC+TGG | - | chr4_1:58980365-58980384 | Msa0559800:intron | 40.0% |
| CTAATAAAGACGGCAATAGG+AGG | + | chr4_1:58980434-58980453 | None:intergenic | 40.0% | |
| CTGCTAATAAAGACGGCAAT+AGG | + | chr4_1:58980437-58980456 | None:intergenic | 40.0% | |
| TGGACAGCTGCTAATAAAGA+CGG | + | chr4_1:58980444-58980463 | None:intergenic | 40.0% | |
| !! | TAGAATATACTTGCTGTGGG+TGG | - | chr4_1:58980488-58980507 | Msa0559800:exon | 40.0% |
| GAAGATTGGATAACATCCGT+AGG | - | chr4_1:58980573-58980592 | Msa0559800:five_prime_UTR | 40.0% | |
| !!! | AAGTTTTGGGCACTAATCTG+TGG | + | chr4_1:58980625-58980644 | None:intergenic | 40.0% |
| AAGACGCAAATGGGAGCAAA+GGG | + | chr4_1:58977922-58977941 | None:intergenic | 45.0% | |
| AAAGACGCAAATGGGAGCAA+AGG | + | chr4_1:58977923-58977942 | None:intergenic | 45.0% | |
| GATTAGGGCAAAGACGCAAA+TGG | + | chr4_1:58977932-58977951 | None:intergenic | 45.0% | |
| GCCATGGTTGTCGAAGATTA+GGG | + | chr4_1:58977947-58977966 | None:intergenic | 45.0% | |
| TGCCATGGTTGTCGAAGATT+AGG | + | chr4_1:58977948-58977967 | None:intergenic | 45.0% | |
| TGAGATGAGAACGTTACCTC+CGG | + | chr4_1:58977981-58978000 | None:intergenic | 45.0% | |
| CTGATTCTCTTCCCCGATTA+TGG | - | chr4_1:58978206-58978225 | Msa0559800:three_prime_UTR | 45.0% | |
| GCTTGACATACCTTGAGCAA+TGG | + | chr4_1:58978976-58978995 | None:intergenic | 45.0% | |
| !!! | TTTTGGGACTGGAAGTGCAA+TGG | - | chr4_1:58979075-58979094 | Msa0559800:intron | 45.0% |
| CTGCCAAAAGAGCTTGAAGT+CGG | + | chr4_1:58979187-58979206 | None:intergenic | 45.0% | |
| CAGCCTGTTATAGTGTTTGC+CGG | + | chr4_1:58979444-58979463 | None:intergenic | 45.0% | |
| ACAGGCTGCTAACATTGCTA+TGG | - | chr4_1:58979456-58979475 | Msa0559800:intron | 45.0% | |
| ! | GCTGTTGGTTGCATTTCAGA+AGG | + | chr4_1:58979633-58979652 | None:intergenic | 45.0% |
| CAGTCCCAATAACAAAGGCA+AGG | + | chr4_1:58979899-58979918 | None:intergenic | 45.0% | |
| TTGCAGTGCATCAACCACTA+CGG | - | chr4_1:58980093-58980112 | Msa0559800:intron | 45.0% | |
| ! | CAGCAAGTGCCAGTTTTACA+TGG | - | chr4_1:58980125-58980144 | Msa0559800:intron | 45.0% |
| GATGGATACAACTGCTTGTG+TGG | - | chr4_1:58980245-58980264 | Msa0559800:intron | 45.0% | |
| ! | GTTGGTCTGGATTGACTTTG+TGG | + | chr4_1:58980464-58980483 | None:intergenic | 45.0% |
| AGACGCAAATGGGAGCAAAG+GGG | + | chr4_1:58977921-58977940 | None:intergenic | 50.0% | |
| GCCCTAATCTTCGACAACCA+TGG | - | chr4_1:58977943-58977962 | Msa0559800:three_prime_UTR | 50.0% | |
| TATATACCTGGAGCAGGACG+TGG | + | chr4_1:58978745-58978764 | None:intergenic | 50.0% | |
| ! | TGGAAGTGCAATGGCACACA+GGG | - | chr4_1:58979084-58979103 | Msa0559800:intron | 50.0% |
| GCTTCATGTTGAATGGTGCG+AGG | + | chr4_1:58979130-58979149 | None:intergenic | 50.0% | |
| AAAGAGCTTGAAGTCGGTGC+AGG | + | chr4_1:58979181-58979200 | None:intergenic | 50.0% | |
| !!! | GCACCGACTTCAAGCTCTTT+TGG | - | chr4_1:58979181-58979200 | Msa0559800:intron | 50.0% |
| CAGCCTGTTATAGCGTCTGT+TGG | + | chr4_1:58979728-58979747 | None:intergenic | 50.0% | |
| TGCTGATCTCAGTTCCGTAG+TGG | + | chr4_1:58980110-58980129 | None:intergenic | 50.0% | |
| GCCGAGTGCAAAAAGAACTC+TGG | - | chr4_1:58980156-58980175 | Msa0559800:intron | 50.0% | |
| GAACGTTACCTCCGGAGCTA+CGG | + | chr4_1:58977973-58977992 | None:intergenic | 55.0% | |
| !! | CTCTGAGGATTAGCTGGAGG+AGG | + | chr4_1:58978918-58978937 | None:intergenic | 55.0% |
| !! | CCACTCTGAGGATTAGCTGG+AGG | + | chr4_1:58978921-58978940 | None:intergenic | 55.0% |
| CCTCCAGCTAATCCTCAGAG+TGG | - | chr4_1:58978918-58978937 | Msa0559800:intron | 55.0% | |
| ! | CCACCACTCTGAGGATTAGC+TGG | + | chr4_1:58978924-58978943 | None:intergenic | 55.0% |
| CCAGCTAATCCTCAGAGTGG+TGG | - | chr4_1:58978921-58978940 | Msa0559800:intron | 55.0% | |
| GCTAATCCTCAGAGTGGTGG+CGG | - | chr4_1:58978924-58978943 | Msa0559800:intron | 55.0% | |
| GGCGGTATGCTTAGTGGCAT+TGG | - | chr4_1:58978945-58978964 | Msa0559800:intron | 55.0% | |
| !!! | GCAGGTATGGCTTTTGGGAC+TGG | - | chr4_1:58979064-58979083 | Msa0559800:intron | 55.0% |
| ! | CTGGAAGTGCAATGGCACAC+AGG | - | chr4_1:58979083-58979102 | Msa0559800:intron | 55.0% |
| AGGACCCACAACAGCATCCA+CGG | + | chr4_1:58979110-58979129 | None:intergenic | 55.0% | |
| ! | GATTAGCTGGAGGAGGAGCG+CGG | + | chr4_1:58978911-58978930 | None:intergenic | 60.0% |
| !! | AATCCTCAGAGTGGTGGCGG+CGG | - | chr4_1:58978927-58978946 | Msa0559800:intron | 60.0% |
| AGGGCCGTGGATGCTGTTGT+GGG | - | chr4_1:58979103-58979122 | Msa0559800:intron | 60.0% | |
| ACCATGGCACGCCGTAGCTC+CGG | - | chr4_1:58977959-58977978 | Msa0559800:three_prime_UTR | 65.0% | |
| ATACCGCCGCCACCACTCTG+AGG | + | chr4_1:58978933-58978952 | None:intergenic | 65.0% | |
| ! | GGTGGCGGCGGTATGCTTAG+TGG | - | chr4_1:58978939-58978958 | Msa0559800:intron | 65.0% |
| TGCAATGGCACACAGGGCCG+TGG | - | chr4_1:58979090-58979109 | Msa0559800:intron | 65.0% | |
| CAGGGCCGTGGATGCTGTTG+TGG | - | chr4_1:58979102-58979121 | Msa0559800:intron | 65.0% | |
| TCCGGAGCTACGGCGTGCCA+TGG | + | chr4_1:58977963-58977982 | None:intergenic | 70.0% | |
| ATGGCACGCCGTAGCTCCGG+AGG | - | chr4_1:58977962-58977981 | Msa0559800:three_prime_UTR | 70.0% | |
| CGTGGTGCAGCACGTGGAGC+TGG | + | chr4_1:58978727-58978746 | None:intergenic | 70.0% | |
| GCAGGACGTGGTGCAGCACG+TGG | + | chr4_1:58978733-58978752 | None:intergenic | 70.0% | |
| GCTGCACCACGTCCTGCTCC+AGG | - | chr4_1:58978736-58978755 | Msa0559800:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 58977773 | 58980688 | 58977773 | ID=Msa0559800;Name=Msa0559800 |
| chr4_1 | mRNA | 58977773 | 58980688 | 58977773 | ID=Msa0559800-mRNA-1;Parent=Msa0559800;Name=Msa0559800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=159|1|1|1|0.8|0.66|6|491|141 |
| chr4_1 | exon | 58977773 | 58978362 | 58977773 | ID=Msa0559800-mRNA-1:exon:18124;Parent=Msa0559800-mRNA-1 |
| chr4_1 | exon | 58979218 | 58979393 | 58979218 | ID=Msa0559800-mRNA-1:exon:18123;Parent=Msa0559800-mRNA-1 |
| chr4_1 | exon | 58979477 | 58979557 | 58979477 | ID=Msa0559800-mRNA-1:exon:18122;Parent=Msa0559800-mRNA-1 |
| chr4_1 | exon | 58979704 | 58979751 | 58979704 | ID=Msa0559800-mRNA-1:exon:18121;Parent=Msa0559800-mRNA-1 |
| chr4_1 | exon | 58980478 | 58980510 | 58980478 | ID=Msa0559800-mRNA-1:exon:18120;Parent=Msa0559800-mRNA-1 |
| chr4_1 | exon | 58980541 | 58980688 | 58980541 | ID=Msa0559800-mRNA-1:exon:18119;Parent=Msa0559800-mRNA-1 |
| chr4_1 | five_prime_UTR | 58980541 | 58980688 | 58980541 | ID=Msa0559800-mRNA-1:five_prime_utr;Parent=Msa0559800-mRNA-1 |
| chr4_1 | five_prime_UTR | 58980500 | 58980510 | 58980500 | ID=Msa0559800-mRNA-1:five_prime_utr;Parent=Msa0559800-mRNA-1 |
| chr4_1 | CDS | 58980478 | 58980499 | 58980478 | ID=Msa0559800-mRNA-1:cds;Parent=Msa0559800-mRNA-1 |
| chr4_1 | CDS | 58979704 | 58979751 | 58979704 | ID=Msa0559800-mRNA-1:cds;Parent=Msa0559800-mRNA-1 |
| chr4_1 | CDS | 58979477 | 58979557 | 58979477 | ID=Msa0559800-mRNA-1:cds;Parent=Msa0559800-mRNA-1 |
| chr4_1 | CDS | 58979218 | 58979393 | 58979218 | ID=Msa0559800-mRNA-1:cds;Parent=Msa0559800-mRNA-1 |
| chr4_1 | CDS | 58978264 | 58978362 | 58978264 | ID=Msa0559800-mRNA-1:cds;Parent=Msa0559800-mRNA-1 |
| chr4_1 | three_prime_UTR | 58977773 | 58978263 | 58977773 | ID=Msa0559800-mRNA-1:three_prime_utr;Parent=Msa0559800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
