Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563970 | XP_013446617.1 | 99.293 | 283 | 2 | 0 | 1 | 283 | 1 | 283 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563970 | sp|P35694|XTH2_SOYBN | 87.589 | 282 | 33 | 2 | 1 | 281 | 1 | 281 | 0.0 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563970 | A0A072TT00 | 99.293 | 283 | 2 | 0 | 1 | 283 | 1 | 283 | 0.0 | 590 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0563970 | Msa0577320 | 0.917329 | 6.060461e-86 | -8.615850e-47 |
| Msa0563970 | Msa0579360 | -0.806753 | 7.059198e-50 | -8.615850e-47 |
| Msa0563970 | Msa0622910 | 0.917608 | 4.317222e-86 | -8.615850e-47 |
| Msa0563970 | Msa0650640 | -0.828271 | 9.866538e-55 | -8.615850e-47 |
| Msa0563970 | Msa0700490 | 0.951924 | 7.287352e-110 | -8.615850e-47 |
| Msa0563970 | Msa0713230 | -0.803542 | 3.317746e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563970 | MtrunA17_Chr8g0377841 | 99.293 | 283 | 2 | 0 | 1 | 283 | 1 | 283 | 0.0 | 590 |
| Msa0563970 | MtrunA17_Chr3g0122021 | 85.874 | 269 | 36 | 2 | 14 | 281 | 10 | 277 | 5.37e-175 | 484 |
| Msa0563970 | MtrunA17_Chr3g0122031 | 85.874 | 269 | 36 | 2 | 14 | 281 | 10 | 277 | 6.19e-175 | 484 |
| Msa0563970 | MtrunA17_Chr8g0389641 | 72.202 | 277 | 40 | 1 | 5 | 281 | 3 | 242 | 1.80e-151 | 423 |
| Msa0563970 | MtrunA17_Chr4g0072611 | 70.956 | 272 | 74 | 1 | 15 | 281 | 9 | 280 | 6.58e-144 | 405 |
| Msa0563970 | MtrunA17_Chr7g0258911 | 69.314 | 277 | 80 | 1 | 10 | 281 | 3 | 279 | 1.08e-141 | 400 |
| Msa0563970 | MtrunA17_Chr4g0072671 | 72.491 | 269 | 65 | 1 | 24 | 283 | 19 | 287 | 1.37e-140 | 397 |
| Msa0563970 | MtrunA17_Chr4g0072601 | 63.287 | 286 | 97 | 2 | 1 | 281 | 1 | 283 | 2.19e-136 | 386 |
| Msa0563970 | MtrunA17_Chr2g0299061 | 67.626 | 278 | 80 | 1 | 14 | 281 | 9 | 286 | 6.00e-136 | 385 |
| Msa0563970 | MtrunA17_Chr4g0071341 | 67.658 | 269 | 80 | 2 | 21 | 282 | 14 | 282 | 6.43e-132 | 375 |
| Msa0563970 | MtrunA17_Chr4g0072681 | 71.946 | 221 | 52 | 1 | 73 | 283 | 25 | 245 | 9.22e-115 | 330 |
| Msa0563970 | MtrunA17_Chr5g0443391 | 53.875 | 271 | 125 | 0 | 11 | 281 | 8 | 278 | 2.35e-106 | 310 |
| Msa0563970 | MtrunA17_Chr7g0252621 | 53.405 | 279 | 118 | 4 | 14 | 281 | 10 | 287 | 1.56e-102 | 301 |
| Msa0563970 | MtrunA17_Chr7g0252631 | 56.031 | 257 | 106 | 3 | 31 | 281 | 32 | 287 | 1.67e-101 | 298 |
| Msa0563970 | MtrunA17_Chr6g0461731 | 51.957 | 281 | 120 | 4 | 16 | 282 | 32 | 311 | 3.56e-101 | 298 |
| Msa0563970 | MtrunA17_Chr6g0461761 | 51.943 | 283 | 121 | 4 | 14 | 282 | 7 | 288 | 4.80e-101 | 297 |
| Msa0563970 | MtrunA17_Chr7g0252601 | 50.871 | 287 | 126 | 4 | 9 | 281 | 2 | 287 | 5.71e-101 | 297 |
| Msa0563970 | MtrunA17_Chr4g0023961 | 48.057 | 283 | 129 | 5 | 15 | 283 | 12 | 290 | 5.20e-96 | 284 |
| Msa0563970 | MtrunA17_Chr3g0096651 | 51.562 | 256 | 122 | 1 | 28 | 281 | 27 | 282 | 1.54e-94 | 280 |
| Msa0563970 | MtrunA17_Chr6g0486581 | 49.104 | 279 | 131 | 3 | 12 | 281 | 7 | 283 | 2.16e-94 | 280 |
| Msa0563970 | MtrunA17_Chr4g0054431 | 49.455 | 275 | 132 | 4 | 13 | 281 | 14 | 287 | 3.41e-93 | 277 |
| Msa0563970 | MtrunA17_Chr4g0054451 | 48.582 | 282 | 137 | 5 | 7 | 281 | 9 | 289 | 3.84e-93 | 277 |
| Msa0563970 | MtrunA17_Chr2g0323161 | 46.290 | 283 | 133 | 4 | 15 | 281 | 7 | 286 | 9.38e-93 | 276 |
| Msa0563970 | MtrunA17_Chr1g0206681 | 47.636 | 275 | 135 | 2 | 15 | 282 | 20 | 292 | 1.36e-90 | 270 |
| Msa0563970 | MtrunA17_Chr1g0206081 | 45.486 | 288 | 141 | 7 | 10 | 282 | 9 | 295 | 7.20e-85 | 256 |
| Msa0563970 | MtrunA17_Chr8g0390201 | 55.897 | 195 | 77 | 4 | 96 | 281 | 15 | 209 | 2.24e-75 | 229 |
| Msa0563970 | MtrunA17_Chr8g0340001 | 45.575 | 226 | 115 | 3 | 62 | 281 | 8 | 231 | 1.99e-69 | 214 |
| Msa0563970 | MtrunA17_Chr7g0264731 | 40.684 | 263 | 140 | 6 | 30 | 282 | 36 | 292 | 3.12e-62 | 198 |
| Msa0563970 | MtrunA17_Chr1g0180451 | 40.076 | 262 | 141 | 6 | 30 | 281 | 39 | 294 | 3.07e-60 | 193 |
| Msa0563970 | MtrunA17_Chr4g0028221 | 40.840 | 262 | 139 | 6 | 30 | 281 | 49 | 304 | 4.29e-60 | 193 |
| Msa0563970 | MtrunA17_Chr2g0327411 | 40.945 | 254 | 134 | 5 | 30 | 272 | 53 | 301 | 1.32e-58 | 189 |
| Msa0563970 | MtrunA17_Chr2g0303861 | 40.964 | 249 | 126 | 8 | 31 | 267 | 29 | 268 | 2.63e-56 | 182 |
| Msa0563970 | MtrunA17_Chr4g0072641 | 65.574 | 122 | 33 | 2 | 161 | 282 | 37 | 149 | 3.79e-51 | 165 |
| Msa0563970 | MtrunA17_Chr8g0375981 | 34.733 | 262 | 160 | 4 | 30 | 281 | 30 | 290 | 5.79e-51 | 170 |
| Msa0563970 | MtrunA17_Chr8g0365231 | 35.165 | 273 | 139 | 8 | 35 | 281 | 50 | 310 | 4.26e-50 | 167 |
| Msa0563970 | MtrunA17_Chr2g0303721 | 35.540 | 287 | 158 | 9 | 5 | 279 | 4 | 275 | 8.73e-50 | 166 |
| Msa0563970 | MtrunA17_Chr5g0410621 | 37.255 | 255 | 140 | 8 | 43 | 282 | 57 | 306 | 9.72e-48 | 162 |
| Msa0563970 | MtrunA17_Chr7g0235541 | 42.365 | 203 | 102 | 6 | 78 | 269 | 1 | 199 | 3.83e-47 | 157 |
| Msa0563970 | MtrunA17_Chr1g0161951 | 36.015 | 261 | 155 | 5 | 31 | 281 | 33 | 291 | 4.03e-47 | 160 |
| Msa0563970 | MtrunA17_Chr8g0382041 | 34.091 | 264 | 158 | 6 | 31 | 281 | 34 | 294 | 1.52e-43 | 151 |
| Msa0563970 | MtrunA17_Chr4g0072631 | 61.333 | 75 | 27 | 1 | 6 | 78 | 4 | 78 | 1.30e-25 | 97.8 |
| Msa0563970 | MtrunA17_Chr8g0374231 | 43.689 | 103 | 50 | 5 | 187 | 282 | 1 | 102 | 2.40e-18 | 78.6 |
| Msa0563970 | MtrunA17_Chr8g0390181 | 48.837 | 86 | 41 | 2 | 13 | 98 | 11 | 93 | 2.45e-17 | 75.5 |
| Msa0563970 | MtrunA17_Chr8g0350711 | 31.977 | 172 | 109 | 5 | 53 | 222 | 54 | 219 | 2.06e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563970 | AT3G23730.1 | 74.101 | 278 | 62 | 3 | 14 | 281 | 9 | 286 | 2.92e-158 | 442 |
| Msa0563970 | AT4G14130.1 | 75.277 | 271 | 61 | 2 | 17 | 281 | 14 | 284 | 1.19e-156 | 438 |
| Msa0563970 | AT4G25810.1 | 65.091 | 275 | 89 | 1 | 14 | 281 | 9 | 283 | 5.29e-135 | 383 |
| Msa0563970 | AT5G57550.1 | 61.679 | 274 | 103 | 1 | 12 | 283 | 11 | 284 | 1.27e-130 | 372 |
| Msa0563970 | AT4G30270.1 | 63.004 | 273 | 91 | 2 | 10 | 282 | 4 | 266 | 2.08e-130 | 371 |
| Msa0563970 | AT5G57560.1 | 61.151 | 278 | 100 | 2 | 12 | 281 | 4 | 281 | 3.71e-128 | 366 |
| Msa0563970 | AT5G57540.1 | 63.602 | 261 | 88 | 2 | 28 | 282 | 23 | 282 | 1.15e-126 | 362 |
| Msa0563970 | AT5G57530.1 | 63.774 | 265 | 87 | 3 | 24 | 282 | 22 | 283 | 8.44e-126 | 360 |
| Msa0563970 | AT4G25820.1 | 63.910 | 266 | 89 | 2 | 22 | 281 | 21 | 285 | 3.87e-123 | 353 |
| Msa0563970 | AT5G48070.1 | 59.636 | 275 | 105 | 3 | 12 | 282 | 10 | 282 | 1.50e-121 | 349 |
| Msa0563970 | AT2G18800.1 | 58.007 | 281 | 100 | 3 | 20 | 282 | 17 | 297 | 2.19e-120 | 347 |
| Msa0563970 | AT4G30280.1 | 59.636 | 275 | 105 | 3 | 12 | 282 | 10 | 282 | 2.70e-112 | 325 |
| Msa0563970 | AT4G30290.1 | 59.273 | 275 | 106 | 3 | 12 | 282 | 5 | 277 | 1.63e-111 | 323 |
| Msa0563970 | AT1G65310.2 | 62.548 | 259 | 91 | 3 | 28 | 282 | 48 | 304 | 2.31e-110 | 322 |
| Msa0563970 | AT1G65310.1 | 62.548 | 259 | 91 | 3 | 28 | 282 | 26 | 282 | 2.97e-110 | 320 |
| Msa0563970 | AT5G13870.2 | 52.899 | 276 | 120 | 4 | 15 | 281 | 13 | 287 | 1.84e-98 | 291 |
| Msa0563970 | AT5G13870.1 | 52.899 | 276 | 120 | 4 | 15 | 281 | 13 | 287 | 1.84e-98 | 291 |
| Msa0563970 | AT5G13870.3 | 52.899 | 276 | 120 | 4 | 15 | 281 | 13 | 287 | 1.84e-98 | 291 |
| Msa0563970 | AT4G03210.1 | 50.000 | 280 | 129 | 5 | 12 | 283 | 10 | 286 | 1.16e-97 | 288 |
| Msa0563970 | AT2G06850.1 | 54.864 | 257 | 109 | 3 | 31 | 281 | 35 | 290 | 3.82e-97 | 288 |
| Msa0563970 | AT5G65730.1 | 47.826 | 276 | 136 | 5 | 12 | 281 | 17 | 290 | 6.29e-92 | 274 |
| Msa0563970 | AT4G37800.1 | 47.018 | 285 | 143 | 5 | 5 | 282 | 7 | 290 | 9.37e-91 | 271 |
| Msa0563970 | AT4G28850.1 | 47.687 | 281 | 135 | 2 | 12 | 282 | 10 | 288 | 2.08e-90 | 270 |
| Msa0563970 | AT4G03210.2 | 55.022 | 229 | 94 | 4 | 63 | 283 | 31 | 258 | 1.17e-89 | 267 |
| Msa0563970 | AT2G06850.2 | 55.895 | 229 | 94 | 3 | 61 | 283 | 5 | 232 | 1.24e-89 | 266 |
| Msa0563970 | AT2G14620.1 | 44.643 | 280 | 148 | 3 | 10 | 282 | 16 | 295 | 5.10e-86 | 259 |
| Msa0563970 | AT1G11545.1 | 45.270 | 296 | 145 | 7 | 1 | 282 | 8 | 300 | 1.51e-85 | 258 |
| Msa0563970 | AT2G14620.2 | 46.957 | 230 | 115 | 2 | 60 | 282 | 16 | 245 | 2.29e-77 | 236 |
| Msa0563970 | AT2G14620.3 | 47.945 | 219 | 107 | 2 | 71 | 282 | 16 | 234 | 3.70e-75 | 229 |
| Msa0563970 | AT4G13090.1 | 41.754 | 285 | 150 | 6 | 11 | 281 | 6 | 288 | 3.89e-73 | 226 |
| Msa0563970 | AT3G25050.1 | 41.538 | 260 | 140 | 4 | 30 | 281 | 34 | 289 | 7.46e-72 | 223 |
| Msa0563970 | AT4G13080.1 | 43.750 | 256 | 136 | 5 | 31 | 281 | 39 | 291 | 4.59e-70 | 218 |
| Msa0563970 | AT2G36870.1 | 40.840 | 262 | 139 | 6 | 30 | 281 | 42 | 297 | 8.26e-60 | 192 |
| Msa0563970 | AT3G44990.1 | 41.603 | 262 | 135 | 9 | 31 | 281 | 39 | 293 | 1.32e-56 | 184 |
| Msa0563970 | AT1G32170.1 | 35.235 | 298 | 168 | 9 | 3 | 281 | 2 | 293 | 1.09e-51 | 172 |
| Msa0563970 | AT1G10550.1 | 35.000 | 260 | 131 | 6 | 50 | 281 | 60 | 309 | 9.19e-51 | 169 |
| Msa0563970 | AT1G14720.1 | 36.641 | 262 | 153 | 6 | 31 | 281 | 31 | 290 | 4.95e-48 | 163 |
| Msa0563970 | AT2G01850.1 | 34.601 | 263 | 144 | 6 | 30 | 273 | 30 | 283 | 1.57e-46 | 159 |
| Msa0563970 | AT3G48580.1 | 33.725 | 255 | 146 | 8 | 37 | 281 | 32 | 273 | 4.42e-42 | 146 |
| Msa0563970 | AT4G18990.1 | 33.984 | 256 | 137 | 6 | 53 | 281 | 62 | 312 | 1.82e-40 | 144 |
| Msa0563970 | AT3G48580.3 | 32.889 | 225 | 135 | 7 | 60 | 281 | 3 | 214 | 8.26e-37 | 130 |
| Msa0563970 | AT4G18990.2 | 33.043 | 230 | 118 | 7 | 80 | 281 | 17 | 238 | 5.18e-33 | 122 |
| Msa0563970 | AT2G36870.2 | 41.727 | 139 | 71 | 3 | 30 | 160 | 42 | 178 | 4.93e-30 | 112 |
| Msa0563970 | AT3G48580.2 | 30.859 | 256 | 132 | 10 | 37 | 281 | 32 | 253 | 3.83e-27 | 106 |
Find 88 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATAATGGTTAGCTTTA+TGG | 0.091663 | 4_1:+64413160 | Msa0563970:CDS |
| ACATTCTTGAATACCCTTAT+TGG | 0.161725 | 4_1:-64414796 | None:intergenic |
| ATTCTCATTGGTTGGTTCTT+TGG | 0.193461 | 4_1:-64414841 | None:intergenic |
| TCAAAGAGAGAGTACCTATT+TGG | 0.231310 | 4_1:+64413311 | Msa0563970:CDS |
| AGTGGAATTAGAAGCCATTT+TGG | 0.245346 | 4_1:-64413108 | None:intergenic |
| GCAGACAGAGAGAGAAGTTT+TGG | 0.263592 | 4_1:-64413077 | None:intergenic |
| TGGTTGATAACATGCCAATA+AGG | 0.266753 | 4_1:+64414782 | Msa0563970:CDS |
| ATGTTTGTGTGAAGAATATA+AGG | 0.286309 | 4_1:-64414558 | None:intergenic |
| GTCTGCTTCTCTGTCCAAAA+TGG | 0.297346 | 4_1:+64413094 | Msa0563970:exon |
| GTTTATGCTAATTGCTATAA+TGG | 0.308914 | 4_1:+64413148 | Msa0563970:CDS |
| TAGCCACTAGGCACTTTATA+AGG | 0.315025 | 4_1:+64415140 | Msa0563970:exon |
| CTCATCATGGGTTGGCCCTT+GGG | 0.318423 | 4_1:-64414499 | None:intergenic |
| TGGATTTAACTGCAGATTCT+TGG | 0.319730 | 4_1:+64414762 | Msa0563970:intron |
| ATAGTTGTTAATGTACATTA+AGG | 0.333362 | 4_1:+64415290 | Msa0563970:three_prime_UTR |
| TCCACACTTACTCCATCATT+TGG | 0.354596 | 4_1:+64414646 | Msa0563970:CDS |
| TTCAAGAATGTTGAATCTAT+TGG | 0.357714 | 4_1:+64414808 | Msa0563970:CDS |
| ATAAATGCGCTTGATGCTTA+TGG | 0.368751 | 4_1:+64415024 | Msa0563970:CDS |
| TCTCATCATGGGTTGGCCCT+TGG | 0.389738 | 4_1:-64414500 | None:intergenic |
| GCATATCAATTCTCCCAAAT+AGG | 0.393235 | 4_1:-64413325 | None:intergenic |
| CAAAGAGAGAGTACCTATTT+GGG | 0.397766 | 4_1:+64413312 | Msa0563970:CDS |
| GCCTGTGGAATGCTGATGAT+TGG | 0.400428 | 4_1:+64414872 | Msa0563970:CDS |
| ATTGGTTGGTTCTTTGGAAA+AGG | 0.403105 | 4_1:-64414835 | None:intergenic |
| AGTTGGATTAATTATTTCAA+TGG | 0.405936 | 4_1:+64415193 | Msa0563970:three_prime_UTR |
| ACTGAGTGGCCTTGAAATTA+CGG | 0.411712 | 4_1:-64414954 | None:intergenic |
| CTTGACAAAGTCTCTGGCTC+TGG | 0.412130 | 4_1:+64413281 | Msa0563970:CDS |
| TAGTTGTTAATGTACATTAA+GGG | 0.422289 | 4_1:+64415291 | Msa0563970:three_prime_UTR |
| GCCTAGTGGCTACACTCAAC+AGG | 0.435642 | 4_1:-64415129 | None:intergenic |
| CTTTCCCTTGACAAAGTCTC+TGG | 0.439703 | 4_1:+64413275 | Msa0563970:CDS |
| GAGAACAACAGTTCTACCTT+TGG | 0.440008 | 4_1:+64414604 | Msa0563970:CDS |
| CTTGTTGCTGGCAACTCAGC+TGG | 0.440806 | 4_1:+64413356 | Msa0563970:CDS |
| ATGCAGCTTAAGCTTGTTGC+TGG | 0.445241 | 4_1:+64413344 | Msa0563970:CDS |
| GTATGCTGTAAAGGGTGCTT+TGG | 0.447810 | 4_1:-64414929 | None:intergenic |
| ATTACGGTAGTATGCTGTAA+AGG | 0.449817 | 4_1:-64414938 | None:intergenic |
| AGCATACTACCGTAATTTCA+AGG | 0.452720 | 4_1:+64414945 | Msa0563970:CDS |
| GGTTGATAACATGCCAATAA+GGG | 0.455271 | 4_1:+64414783 | Msa0563970:CDS |
| GTTCAAATTCTGATGCTGAA+TGG | 0.458018 | 4_1:+64414998 | Msa0563970:CDS |
| ACTCAAAATCAATCTCATCA+TGG | 0.481396 | 4_1:-64414512 | None:intergenic |
| AGGCTGGAATAGATTCTCAT+TGG | 0.482882 | 4_1:-64414853 | None:intergenic |
| AGTGACTTACATGATGTGTT+GGG | 0.486675 | 4_1:-64414673 | None:intergenic |
| TTTCACCAATCCACCTCTTG+TGG | 0.492660 | 4_1:-64414896 | None:intergenic |
| TGGAATAGATTCTCATTGGT+TGG | 0.493361 | 4_1:-64414849 | None:intergenic |
| TTTATGGTGGCTACTTGTGC+TGG | 0.495035 | 4_1:+64413176 | Msa0563970:CDS |
| ATCATCAGCATTCCACAGGC+TGG | 0.499092 | 4_1:-64414869 | None:intergenic |
| CTCAAAATCAATCTCATCAT+GGG | 0.501697 | 4_1:-64414511 | None:intergenic |
| CCTGTGGAATGCTGATGATT+GGG | 0.507771 | 4_1:+64414873 | Msa0563970:CDS |
| GTGGTACAGCTGTCATCCCA+AGG | 0.509097 | 4_1:+64414483 | Msa0563970:intron |
| TTACGGTAGTATGCTGTAAA+GGG | 0.510381 | 4_1:-64414937 | None:intergenic |
| ATTTGAACTTAAAGAAGACT+TGG | 0.523911 | 4_1:-64414983 | None:intergenic |
| CACTCAACAGGAACACCTTG+TGG | 0.524101 | 4_1:-64415117 | None:intergenic |
| AACATCTTTACTCAAGGTAA+AGG | 0.524688 | 4_1:+64414576 | Msa0563970:CDS |
| ACCAAGACTTTGATCTAACA+TGG | 0.525267 | 4_1:+64413207 | Msa0563970:CDS |
| ACTCAACAGGAACACCTTGT+GGG | 0.532653 | 4_1:-64415116 | None:intergenic |
| AACCGTGCTAAGATATTCAA+TGG | 0.538829 | 4_1:+64413236 | Msa0563970:CDS |
| GTGTTGGGGCTTCCAAATGA+TGG | 0.542384 | 4_1:-64414658 | None:intergenic |
| ATGGTAGAAGAAGATTGAGA+TGG | 0.542822 | 4_1:+64415043 | Msa0563970:CDS |
| CCCAATCATCAGCATTCCAC+AGG | 0.544118 | 4_1:-64414873 | None:intergenic |
| CACACAAACATCTTTACTCA+AGG | 0.546119 | 4_1:+64414570 | Msa0563970:CDS |
| TCCTGTTGAGTGTAGCCACT+AGG | 0.556001 | 4_1:+64415128 | Msa0563970:CDS |
| AGTTGTTAATGTACATTAAG+GGG | 0.558771 | 4_1:+64415292 | Msa0563970:three_prime_UTR |
| CCCATGTTAGATCAAAGTCT+TGG | 0.564659 | 4_1:-64413208 | None:intergenic |
| TTCTAGTGGGGTCAAACCAA+AGG | 0.574586 | 4_1:-64414620 | None:intergenic |
| TATAATGGTTAGCTTTATGG+TGG | 0.576994 | 4_1:+64413163 | Msa0563970:CDS |
| AAATCAATCTCATCATGGGT+TGG | 0.583038 | 4_1:-64414507 | None:intergenic |
| TTGGGCCACAAGAGGTGGAT+TGG | 0.585521 | 4_1:+64414891 | Msa0563970:CDS |
| TGGTAGAAGAAGATTGAGAT+GGG | 0.586469 | 4_1:+64415044 | Msa0563970:CDS |
| GATGATTGGGCCACAAGAGG+TGG | 0.588016 | 4_1:+64414886 | Msa0563970:CDS |
| TAAGTGTGGAAGTTTCTAGT+GGG | 0.590801 | 4_1:-64414633 | None:intergenic |
| CAGAGCCAGAGACTTTGTCA+AGG | 0.592607 | 4_1:-64413280 | None:intergenic |
| TCCAAATGATGGAGTAAGTG+TGG | 0.592696 | 4_1:-64414647 | None:intergenic |
| GTGGATTGGTGAAAACTGAT+TGG | 0.593499 | 4_1:+64414905 | Msa0563970:CDS |
| TAGTGACTTACATGATGTGT+TGG | 0.593803 | 4_1:-64414674 | None:intergenic |
| CACATGAAACTCATTGTGAG+TGG | 0.603766 | 4_1:-64413126 | None:intergenic |
| CACCATTGAATATCTTAGCA+CGG | 0.605044 | 4_1:-64413238 | None:intergenic |
| CCAAGACTTTGATCTAACAT+GGG | 0.605585 | 4_1:+64413208 | Msa0563970:CDS |
| GAGTTCTTGGGAAACACAAG+TGG | 0.615147 | 4_1:+64414531 | Msa0563970:CDS |
| TGAGAATCTATTCCAGCCTG+TGG | 0.616171 | 4_1:+64414857 | Msa0563970:CDS |
| TGTTTGTGTGAAGAATATAA+GGG | 0.617384 | 4_1:-64414557 | None:intergenic |
| AGAGCCAGAGACTTTGTCAA+GGG | 0.627053 | 4_1:-64413279 | None:intergenic |
| GTAAGTGTGGAAGTTTCTAG+TGG | 0.637553 | 4_1:-64414634 | None:intergenic |
| GTGACTTACATGATGTGTTG+GGG | 0.642539 | 4_1:-64414672 | None:intergenic |
| GCTGATGATTGGGCCACAAG+AGG | 0.655452 | 4_1:+64414883 | Msa0563970:CDS |
| TGGTACAGCTGTCATCCCAA+GGG | 0.668640 | 4_1:+64414484 | Msa0563970:intron |
| GATCTTAAGCGATTCCCACA+AGG | 0.682204 | 4_1:+64415102 | Msa0563970:CDS |
| CAAGACTTTGATCTAACATG+GGG | 0.690513 | 4_1:+64413209 | Msa0563970:CDS |
| CGTGCTAAGATATTCAATGG+TGG | 0.692895 | 4_1:+64413239 | Msa0563970:CDS |
| AAGTGTGGAAGTTTCTAGTG+GGG | 0.697172 | 4_1:-64414632 | None:intergenic |
| GAACCTTATAAAGTGCCTAG+TGG | 0.721452 | 4_1:-64415143 | None:intergenic |
| AGACTTGGTTGAGAACTGAG+TGG | 0.735795 | 4_1:-64414968 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTTATAAAGTAAAAACAA+GGG | - | chr4_1:64413663-64413682 | None:intergenic | 15.0% |
| !! | AGATTTATAAAGTAAAAACA+AGG | - | chr4_1:64413664-64413683 | None:intergenic | 15.0% |
| !! | TATGTCTTAAAAATCTAAAT+TGG | - | chr4_1:64414174-64414193 | None:intergenic | 15.0% |
| !! | ATCTAACTAAATTATTGATA+TGG | - | chr4_1:64414448-64414467 | None:intergenic | 15.0% |
| !!! | AGATTAATTTAAATTTGTTG+TGG | + | chr4_1:64414464-64414483 | Msa0563970:intron | 15.0% |
| !! | GATTTATAAAGTAAAAACAA+GGG | - | chr4_1:64413663-64413682 | None:intergenic | 15.0% |
| !! | AGATTTATAAAGTAAAAACA+AGG | - | chr4_1:64413664-64413683 | None:intergenic | 15.0% |
| !! | TATGTCTTAAAAATCTAAAT+TGG | - | chr4_1:64414174-64414193 | None:intergenic | 15.0% |
| !! | ATCTAACTAAATTATTGATA+TGG | - | chr4_1:64414448-64414467 | None:intergenic | 15.0% |
| !!! | AGATTAATTTAAATTTGTTG+TGG | + | chr4_1:64414464-64414483 | Msa0563970:intron | 15.0% |
| !! | TGTATAAAAGTGATTATAGT+AGG | - | chr4_1:64413414-64413433 | None:intergenic | 20.0% |
| !!! | TTATACACTACTTTCAATTT+TGG | + | chr4_1:64413427-64413446 | Msa0563970:intron | 20.0% |
| !! | TTTATGTACATTAATCAACT+TGG | + | chr4_1:64413995-64414014 | Msa0563970:intron | 20.0% |
| !!! | ACTTGGTCTTTTTTTTAAAA+CGG | + | chr4_1:64414012-64414031 | Msa0563970:intron | 20.0% |
| !!! | TAAGTTTCAAATGAATGTTT+TGG | - | chr4_1:64414092-64414111 | None:intergenic | 20.0% |
| !!! | ACAAAATTTTACTTCTAAGT+TGG | + | chr4_1:64415176-64415195 | Msa0563970:three_prime_UTR | 20.0% |
| !! | AGTTGGATTAATTATTTCAA+TGG | + | chr4_1:64415193-64415212 | Msa0563970:three_prime_UTR | 20.0% |
| !! | ATAGTTGTTAATGTACATTA+AGG | + | chr4_1:64415290-64415309 | Msa0563970:three_prime_UTR | 20.0% |
| !! | TAGTTGTTAATGTACATTAA+GGG | + | chr4_1:64415291-64415310 | Msa0563970:three_prime_UTR | 20.0% |
| !! | TGTATAAAAGTGATTATAGT+AGG | - | chr4_1:64413414-64413433 | None:intergenic | 20.0% |
| !!! | TTATACACTACTTTCAATTT+TGG | + | chr4_1:64413427-64413446 | Msa0563970:intron | 20.0% |
| !! | TTTATGTACATTAATCAACT+TGG | + | chr4_1:64413995-64414014 | Msa0563970:intron | 20.0% |
| !!! | ACTTGGTCTTTTTTTTAAAA+CGG | + | chr4_1:64414012-64414031 | Msa0563970:intron | 20.0% |
| !!! | TAAGTTTCAAATGAATGTTT+TGG | - | chr4_1:64414092-64414111 | None:intergenic | 20.0% |
| !!! | ACAAAATTTTACTTCTAAGT+TGG | + | chr4_1:64415176-64415195 | Msa0563970:three_prime_UTR | 20.0% |
| !! | AGTTGGATTAATTATTTCAA+TGG | + | chr4_1:64415193-64415212 | Msa0563970:three_prime_UTR | 20.0% |
| !! | ATAGTTGTTAATGTACATTA+AGG | + | chr4_1:64415290-64415309 | Msa0563970:three_prime_UTR | 20.0% |
| !! | TAGTTGTTAATGTACATTAA+GGG | + | chr4_1:64415291-64415310 | Msa0563970:three_prime_UTR | 20.0% |
| ! | GTTTATGCTAATTGCTATAA+TGG | + | chr4_1:64413148-64413167 | Msa0563970:CDS | 25.0% |
| ! | ATACAACAAGGTTATAATGA+TGG | - | chr4_1:64413476-64413495 | None:intergenic | 25.0% |
| !!! | ACTTTAGTATTGATTCTTCA+AGG | + | chr4_1:64413791-64413810 | Msa0563970:intron | 25.0% |
| ! | GTTATCTAATGTGTAAAAGT+AGG | - | chr4_1:64413855-64413874 | None:intergenic | 25.0% |
| !!! | AATGTAGTTAATGTTGACTT+TGG | + | chr4_1:64414065-64414084 | Msa0563970:intron | 25.0% |
| !! | AGTGATTTTATGTGAAGAAT+CGG | - | chr4_1:64414311-64414330 | None:intergenic | 25.0% |
| ! | TGTTTGTGTGAAGAATATAA+GGG | - | chr4_1:64414560-64414579 | None:intergenic | 25.0% |
| ! | ATGTTTGTGTGAAGAATATA+AGG | - | chr4_1:64414561-64414580 | None:intergenic | 25.0% |
| ! | CATTAGTTACTTAATGCTTA+AGG | - | chr4_1:64414735-64414754 | None:intergenic | 25.0% |
| ! | TAAGTAACTAATGCATGAAT+TGG | + | chr4_1:64414742-64414761 | Msa0563970:intron | 25.0% |
| ! | TTCAAGAATGTTGAATCTAT+TGG | + | chr4_1:64414808-64414827 | Msa0563970:CDS | 25.0% |
| ! | ATTTGAACTTAAAGAAGACT+TGG | - | chr4_1:64414986-64415005 | None:intergenic | 25.0% |
| ! | AGTTGTTAATGTACATTAAG+GGG | + | chr4_1:64415292-64415311 | Msa0563970:three_prime_UTR | 25.0% |
| ! | GTTTATGCTAATTGCTATAA+TGG | + | chr4_1:64413148-64413167 | Msa0563970:CDS | 25.0% |
| ! | ATACAACAAGGTTATAATGA+TGG | - | chr4_1:64413476-64413495 | None:intergenic | 25.0% |
| !!! | ACTTTAGTATTGATTCTTCA+AGG | + | chr4_1:64413791-64413810 | Msa0563970:intron | 25.0% |
| ! | GTTATCTAATGTGTAAAAGT+AGG | - | chr4_1:64413855-64413874 | None:intergenic | 25.0% |
| !!! | AATGTAGTTAATGTTGACTT+TGG | + | chr4_1:64414065-64414084 | Msa0563970:intron | 25.0% |
| !! | AGTGATTTTATGTGAAGAAT+CGG | - | chr4_1:64414311-64414330 | None:intergenic | 25.0% |
| ! | TGTTTGTGTGAAGAATATAA+GGG | - | chr4_1:64414560-64414579 | None:intergenic | 25.0% |
| ! | ATGTTTGTGTGAAGAATATA+AGG | - | chr4_1:64414561-64414580 | None:intergenic | 25.0% |
| ! | CATTAGTTACTTAATGCTTA+AGG | - | chr4_1:64414735-64414754 | None:intergenic | 25.0% |
| ! | TAAGTAACTAATGCATGAAT+TGG | + | chr4_1:64414742-64414761 | Msa0563970:intron | 25.0% |
| ! | TTCAAGAATGTTGAATCTAT+TGG | + | chr4_1:64414808-64414827 | Msa0563970:CDS | 25.0% |
| ! | ATTTGAACTTAAAGAAGACT+TGG | - | chr4_1:64414986-64415005 | None:intergenic | 25.0% |
| ! | AGTTGTTAATGTACATTAAG+GGG | + | chr4_1:64415292-64415311 | Msa0563970:three_prime_UTR | 25.0% |
| !! | TGCTATAATGGTTAGCTTTA+TGG | + | chr4_1:64413160-64413179 | Msa0563970:CDS | 30.0% |
| !! | TATAATGGTTAGCTTTATGG+TGG | + | chr4_1:64413163-64413182 | Msa0563970:CDS | 30.0% |
| !! | GGTTATAATGATGGATGAAA+TGG | - | chr4_1:64413467-64413486 | None:intergenic | 30.0% |
| AGCATGTATATGATACAACA+AGG | - | chr4_1:64413488-64413507 | None:intergenic | 30.0% | |
| ATAAGCTCTTCAGAAATAGT+AGG | - | chr4_1:64413598-64413617 | None:intergenic | 30.0% | |
| GATTTATGACATCTTCCAAT+AGG | + | chr4_1:64413818-64413837 | Msa0563970:intron | 30.0% | |
| GTGTAAAAGTAGGTCAATAA+TGG | - | chr4_1:64413845-64413864 | None:intergenic | 30.0% | |
| !! | TGCACAGTTTAATTTGACAA+AGG | - | chr4_1:64413880-64413899 | None:intergenic | 30.0% |
| ACATATGTATGATAGCAACA+TGG | - | chr4_1:64413976-64413995 | None:intergenic | 30.0% | |
| ! | CTTGAAATTTAAAGCTCTCT+TGG | + | chr4_1:64414285-64414304 | Msa0563970:intron | 30.0% |
| TTGATATGGCAATACCAAAA+AGG | - | chr4_1:64414434-64414453 | None:intergenic | 30.0% | |
| CTCAAAATCAATCTCATCAT+GGG | - | chr4_1:64414514-64414533 | None:intergenic | 30.0% | |
| ACTCAAAATCAATCTCATCA+TGG | - | chr4_1:64414515-64414534 | None:intergenic | 30.0% | |
| !!! | TGAGATTGATTTTGAGTTCT+TGG | + | chr4_1:64414518-64414537 | Msa0563970:CDS | 30.0% |
| !!! | GAGATTGATTTTGAGTTCTT+GGG | + | chr4_1:64414519-64414538 | Msa0563970:CDS | 30.0% |
| AACATCTTTACTCAAGGTAA+AGG | + | chr4_1:64414576-64414595 | Msa0563970:CDS | 30.0% | |
| ACATTCTTGAATACCCTTAT+TGG | - | chr4_1:64414799-64414818 | None:intergenic | 30.0% | |
| !! | TGCTATAATGGTTAGCTTTA+TGG | + | chr4_1:64413160-64413179 | Msa0563970:CDS | 30.0% |
| !! | TATAATGGTTAGCTTTATGG+TGG | + | chr4_1:64413163-64413182 | Msa0563970:CDS | 30.0% |
| !! | GGTTATAATGATGGATGAAA+TGG | - | chr4_1:64413467-64413486 | None:intergenic | 30.0% |
| AGCATGTATATGATACAACA+AGG | - | chr4_1:64413488-64413507 | None:intergenic | 30.0% | |
| ATAAGCTCTTCAGAAATAGT+AGG | - | chr4_1:64413598-64413617 | None:intergenic | 30.0% | |
| GATTTATGACATCTTCCAAT+AGG | + | chr4_1:64413818-64413837 | Msa0563970:intron | 30.0% | |
| GTGTAAAAGTAGGTCAATAA+TGG | - | chr4_1:64413845-64413864 | None:intergenic | 30.0% | |
| !! | TGCACAGTTTAATTTGACAA+AGG | - | chr4_1:64413880-64413899 | None:intergenic | 30.0% |
| ACATATGTATGATAGCAACA+TGG | - | chr4_1:64413976-64413995 | None:intergenic | 30.0% | |
| ! | CTTGAAATTTAAAGCTCTCT+TGG | + | chr4_1:64414285-64414304 | Msa0563970:intron | 30.0% |
| TTGATATGGCAATACCAAAA+AGG | - | chr4_1:64414434-64414453 | None:intergenic | 30.0% | |
| CTCAAAATCAATCTCATCAT+GGG | - | chr4_1:64414514-64414533 | None:intergenic | 30.0% | |
| ACTCAAAATCAATCTCATCA+TGG | - | chr4_1:64414515-64414534 | None:intergenic | 30.0% | |
| !!! | TGAGATTGATTTTGAGTTCT+TGG | + | chr4_1:64414518-64414537 | Msa0563970:CDS | 30.0% |
| !!! | GAGATTGATTTTGAGTTCTT+GGG | + | chr4_1:64414519-64414538 | Msa0563970:CDS | 30.0% |
| AACATCTTTACTCAAGGTAA+AGG | + | chr4_1:64414576-64414595 | Msa0563970:CDS | 30.0% | |
| ACATTCTTGAATACCCTTAT+TGG | - | chr4_1:64414799-64414818 | None:intergenic | 30.0% | |
| ! | AGTGGAATTAGAAGCCATTT+TGG | - | chr4_1:64413111-64413130 | None:intergenic | 35.0% |
| ACCAAGACTTTGATCTAACA+TGG | + | chr4_1:64413207-64413226 | Msa0563970:CDS | 35.0% | |
| CCAAGACTTTGATCTAACAT+GGG | + | chr4_1:64413208-64413227 | Msa0563970:CDS | 35.0% | |
| CAAGACTTTGATCTAACATG+GGG | + | chr4_1:64413209-64413228 | Msa0563970:CDS | 35.0% | |
| AACCGTGCTAAGATATTCAA+TGG | + | chr4_1:64413236-64413255 | Msa0563970:CDS | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | - | chr4_1:64413241-64413260 | None:intergenic | 35.0% | |
| !! | TCAAAGAGAGAGTACCTATT+TGG | + | chr4_1:64413311-64413330 | Msa0563970:CDS | 35.0% |
| !! | CAAAGAGAGAGTACCTATTT+GGG | + | chr4_1:64413312-64413331 | Msa0563970:CDS | 35.0% |
| GCATATCAATTCTCCCAAAT+AGG | - | chr4_1:64413328-64413347 | None:intergenic | 35.0% | |
| TAGGTCAATAATGGTCCTAT+TGG | - | chr4_1:64413836-64413855 | None:intergenic | 35.0% | |
| AATTTCACTTTCTCGTGACA+AGG | + | chr4_1:64414041-64414060 | Msa0563970:intron | 35.0% | |
| ATTTCACTTTCTCGTGACAA+GGG | + | chr4_1:64414042-64414061 | Msa0563970:intron | 35.0% | |
| ! | GAACATCTAAAACGTGATTC+AGG | + | chr4_1:64414198-64414217 | Msa0563970:intron | 35.0% |
| ! | AAAGGAAAGGGACTTTTCTT+TGG | - | chr4_1:64414416-64414435 | None:intergenic | 35.0% |
| ! | AGAAAAGTCCCTTTCCTTTT+TGG | + | chr4_1:64414417-64414436 | Msa0563970:intron | 35.0% |
| TGGCAATACCAAAAAGGAAA+GGG | - | chr4_1:64414428-64414447 | None:intergenic | 35.0% | |
| ATGGCAATACCAAAAAGGAA+AGG | - | chr4_1:64414429-64414448 | None:intergenic | 35.0% | |
| AAATCAATCTCATCATGGGT+TGG | - | chr4_1:64414510-64414529 | None:intergenic | 35.0% | |
| CACACAAACATCTTTACTCA+AGG | + | chr4_1:64414570-64414589 | Msa0563970:CDS | 35.0% | |
| !! | TAAGTGTGGAAGTTTCTAGT+GGG | - | chr4_1:64414636-64414655 | None:intergenic | 35.0% |
| AGTGACTTACATGATGTGTT+GGG | - | chr4_1:64414676-64414695 | None:intergenic | 35.0% | |
| TAGTGACTTACATGATGTGT+TGG | - | chr4_1:64414677-64414696 | None:intergenic | 35.0% | |
| TGGATTTAACTGCAGATTCT+TGG | + | chr4_1:64414762-64414781 | Msa0563970:intron | 35.0% | |
| !! | TGGTTGATAACATGCCAATA+AGG | + | chr4_1:64414782-64414801 | Msa0563970:CDS | 35.0% |
| !! | GGTTGATAACATGCCAATAA+GGG | + | chr4_1:64414783-64414802 | Msa0563970:CDS | 35.0% |
| ! | ATTGGTTGGTTCTTTGGAAA+AGG | - | chr4_1:64414838-64414857 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | - | chr4_1:64414844-64414863 | None:intergenic | 35.0% |
| TGGAATAGATTCTCATTGGT+TGG | - | chr4_1:64414852-64414871 | None:intergenic | 35.0% | |
| TTACGGTAGTATGCTGTAAA+GGG | - | chr4_1:64414940-64414959 | None:intergenic | 35.0% | |
| ATTACGGTAGTATGCTGTAA+AGG | - | chr4_1:64414941-64414960 | None:intergenic | 35.0% | |
| AGCATACTACCGTAATTTCA+AGG | + | chr4_1:64414945-64414964 | Msa0563970:CDS | 35.0% | |
| GTTCAAATTCTGATGCTGAA+TGG | + | chr4_1:64414998-64415017 | Msa0563970:CDS | 35.0% | |
| ATAAATGCGCTTGATGCTTA+TGG | + | chr4_1:64415024-64415043 | Msa0563970:CDS | 35.0% | |
| ATGGTAGAAGAAGATTGAGA+TGG | + | chr4_1:64415043-64415062 | Msa0563970:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | + | chr4_1:64415044-64415063 | Msa0563970:CDS | 35.0% | |
| ! | AGTGGAATTAGAAGCCATTT+TGG | - | chr4_1:64413111-64413130 | None:intergenic | 35.0% |
| ACCAAGACTTTGATCTAACA+TGG | + | chr4_1:64413207-64413226 | Msa0563970:CDS | 35.0% | |
| CCAAGACTTTGATCTAACAT+GGG | + | chr4_1:64413208-64413227 | Msa0563970:CDS | 35.0% | |
| CAAGACTTTGATCTAACATG+GGG | + | chr4_1:64413209-64413228 | Msa0563970:CDS | 35.0% | |
| AACCGTGCTAAGATATTCAA+TGG | + | chr4_1:64413236-64413255 | Msa0563970:CDS | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | - | chr4_1:64413241-64413260 | None:intergenic | 35.0% | |
| !! | TCAAAGAGAGAGTACCTATT+TGG | + | chr4_1:64413311-64413330 | Msa0563970:CDS | 35.0% |
| !! | CAAAGAGAGAGTACCTATTT+GGG | + | chr4_1:64413312-64413331 | Msa0563970:CDS | 35.0% |
| GCATATCAATTCTCCCAAAT+AGG | - | chr4_1:64413328-64413347 | None:intergenic | 35.0% | |
| TAGGTCAATAATGGTCCTAT+TGG | - | chr4_1:64413836-64413855 | None:intergenic | 35.0% | |
| AATTTCACTTTCTCGTGACA+AGG | + | chr4_1:64414041-64414060 | Msa0563970:intron | 35.0% | |
| ATTTCACTTTCTCGTGACAA+GGG | + | chr4_1:64414042-64414061 | Msa0563970:intron | 35.0% | |
| ! | GAACATCTAAAACGTGATTC+AGG | + | chr4_1:64414198-64414217 | Msa0563970:intron | 35.0% |
| ! | AAAGGAAAGGGACTTTTCTT+TGG | - | chr4_1:64414416-64414435 | None:intergenic | 35.0% |
| ! | AGAAAAGTCCCTTTCCTTTT+TGG | + | chr4_1:64414417-64414436 | Msa0563970:intron | 35.0% |
| TGGCAATACCAAAAAGGAAA+GGG | - | chr4_1:64414428-64414447 | None:intergenic | 35.0% | |
| ATGGCAATACCAAAAAGGAA+AGG | - | chr4_1:64414429-64414448 | None:intergenic | 35.0% | |
| AAATCAATCTCATCATGGGT+TGG | - | chr4_1:64414510-64414529 | None:intergenic | 35.0% | |
| CACACAAACATCTTTACTCA+AGG | + | chr4_1:64414570-64414589 | Msa0563970:CDS | 35.0% | |
| !! | TAAGTGTGGAAGTTTCTAGT+GGG | - | chr4_1:64414636-64414655 | None:intergenic | 35.0% |
| AGTGACTTACATGATGTGTT+GGG | - | chr4_1:64414676-64414695 | None:intergenic | 35.0% | |
| TAGTGACTTACATGATGTGT+TGG | - | chr4_1:64414677-64414696 | None:intergenic | 35.0% | |
| TGGATTTAACTGCAGATTCT+TGG | + | chr4_1:64414762-64414781 | Msa0563970:intron | 35.0% | |
| !! | TGGTTGATAACATGCCAATA+AGG | + | chr4_1:64414782-64414801 | Msa0563970:CDS | 35.0% |
| !! | GGTTGATAACATGCCAATAA+GGG | + | chr4_1:64414783-64414802 | Msa0563970:CDS | 35.0% |
| ! | ATTGGTTGGTTCTTTGGAAA+AGG | - | chr4_1:64414838-64414857 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | - | chr4_1:64414844-64414863 | None:intergenic | 35.0% |
| TGGAATAGATTCTCATTGGT+TGG | - | chr4_1:64414852-64414871 | None:intergenic | 35.0% | |
| TTACGGTAGTATGCTGTAAA+GGG | - | chr4_1:64414940-64414959 | None:intergenic | 35.0% | |
| ATTACGGTAGTATGCTGTAA+AGG | - | chr4_1:64414941-64414960 | None:intergenic | 35.0% | |
| AGCATACTACCGTAATTTCA+AGG | + | chr4_1:64414945-64414964 | Msa0563970:CDS | 35.0% | |
| GTTCAAATTCTGATGCTGAA+TGG | + | chr4_1:64414998-64415017 | Msa0563970:CDS | 35.0% | |
| ATAAATGCGCTTGATGCTTA+TGG | + | chr4_1:64415024-64415043 | Msa0563970:CDS | 35.0% | |
| ATGGTAGAAGAAGATTGAGA+TGG | + | chr4_1:64415043-64415062 | Msa0563970:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | + | chr4_1:64415044-64415063 | Msa0563970:CDS | 35.0% | |
| CACATGAAACTCATTGTGAG+TGG | - | chr4_1:64413129-64413148 | None:intergenic | 40.0% | |
| CCCATGTTAGATCAAAGTCT+TGG | - | chr4_1:64413211-64413230 | None:intergenic | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | + | chr4_1:64413239-64413258 | Msa0563970:CDS | 40.0% | |
| GAGAACAACAGTTCTACCTT+TGG | + | chr4_1:64414604-64414623 | Msa0563970:CDS | 40.0% | |
| !! | AAGTGTGGAAGTTTCTAGTG+GGG | - | chr4_1:64414635-64414654 | None:intergenic | 40.0% |
| ! | GTAAGTGTGGAAGTTTCTAG+TGG | - | chr4_1:64414637-64414656 | None:intergenic | 40.0% |
| TCCACACTTACTCCATCATT+TGG | + | chr4_1:64414646-64414665 | Msa0563970:CDS | 40.0% | |
| ! | TCCAAATGATGGAGTAAGTG+TGG | - | chr4_1:64414650-64414669 | None:intergenic | 40.0% |
| GTGACTTACATGATGTGTTG+GGG | - | chr4_1:64414675-64414694 | None:intergenic | 40.0% | |
| AGGCTGGAATAGATTCTCAT+TGG | - | chr4_1:64414856-64414875 | None:intergenic | 40.0% | |
| !! | GTGGATTGGTGAAAACTGAT+TGG | + | chr4_1:64414905-64414924 | Msa0563970:CDS | 40.0% |
| ! | ACTGAGTGGCCTTGAAATTA+CGG | - | chr4_1:64414957-64414976 | None:intergenic | 40.0% |
| TAGCCACTAGGCACTTTATA+AGG | + | chr4_1:64415140-64415159 | Msa0563970:exon | 40.0% | |
| ! | GAACCTTATAAAGTGCCTAG+TGG | - | chr4_1:64415146-64415165 | None:intergenic | 40.0% |
| CACATGAAACTCATTGTGAG+TGG | - | chr4_1:64413129-64413148 | None:intergenic | 40.0% | |
| CCCATGTTAGATCAAAGTCT+TGG | - | chr4_1:64413211-64413230 | None:intergenic | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | + | chr4_1:64413239-64413258 | Msa0563970:CDS | 40.0% | |
| GAGAACAACAGTTCTACCTT+TGG | + | chr4_1:64414604-64414623 | Msa0563970:CDS | 40.0% | |
| !! | AAGTGTGGAAGTTTCTAGTG+GGG | - | chr4_1:64414635-64414654 | None:intergenic | 40.0% |
| ! | GTAAGTGTGGAAGTTTCTAG+TGG | - | chr4_1:64414637-64414656 | None:intergenic | 40.0% |
| TCCACACTTACTCCATCATT+TGG | + | chr4_1:64414646-64414665 | Msa0563970:CDS | 40.0% | |
| ! | TCCAAATGATGGAGTAAGTG+TGG | - | chr4_1:64414650-64414669 | None:intergenic | 40.0% |
| GTGACTTACATGATGTGTTG+GGG | - | chr4_1:64414675-64414694 | None:intergenic | 40.0% | |
| AGGCTGGAATAGATTCTCAT+TGG | - | chr4_1:64414856-64414875 | None:intergenic | 40.0% | |
| !! | GTGGATTGGTGAAAACTGAT+TGG | + | chr4_1:64414905-64414924 | Msa0563970:CDS | 40.0% |
| ! | ACTGAGTGGCCTTGAAATTA+CGG | - | chr4_1:64414957-64414976 | None:intergenic | 40.0% |
| TAGCCACTAGGCACTTTATA+AGG | + | chr4_1:64415140-64415159 | Msa0563970:exon | 40.0% | |
| ! | GAACCTTATAAAGTGCCTAG+TGG | - | chr4_1:64415146-64415165 | None:intergenic | 40.0% |
| ! | GCAGACAGAGAGAGAAGTTT+TGG | - | chr4_1:64413080-64413099 | None:intergenic | 45.0% |
| GTCTGCTTCTCTGTCCAAAA+TGG | + | chr4_1:64413094-64413113 | Msa0563970:exon | 45.0% | |
| TTTATGGTGGCTACTTGTGC+TGG | + | chr4_1:64413176-64413195 | Msa0563970:CDS | 45.0% | |
| CTTTCCCTTGACAAAGTCTC+TGG | + | chr4_1:64413275-64413294 | Msa0563970:CDS | 45.0% | |
| AGAGCCAGAGACTTTGTCAA+GGG | - | chr4_1:64413282-64413301 | None:intergenic | 45.0% | |
| !! | ATGCAGCTTAAGCTTGTTGC+TGG | + | chr4_1:64413344-64413363 | Msa0563970:CDS | 45.0% |
| GAGTTCTTGGGAAACACAAG+TGG | + | chr4_1:64414531-64414550 | Msa0563970:CDS | 45.0% | |
| TTCTAGTGGGGTCAAACCAA+AGG | - | chr4_1:64414623-64414642 | None:intergenic | 45.0% | |
| TGAGAATCTATTCCAGCCTG+TGG | + | chr4_1:64414857-64414876 | Msa0563970:CDS | 45.0% | |
| CCTGTGGAATGCTGATGATT+GGG | + | chr4_1:64414873-64414892 | Msa0563970:CDS | 45.0% | |
| TTTCACCAATCCACCTCTTG+TGG | - | chr4_1:64414899-64414918 | None:intergenic | 45.0% | |
| !! | GTATGCTGTAAAGGGTGCTT+TGG | - | chr4_1:64414932-64414951 | None:intergenic | 45.0% |
| ! | AGACTTGGTTGAGAACTGAG+TGG | - | chr4_1:64414971-64414990 | None:intergenic | 45.0% |
| GATCTTAAGCGATTCCCACA+AGG | + | chr4_1:64415102-64415121 | Msa0563970:CDS | 45.0% | |
| ACTCAACAGGAACACCTTGT+GGG | - | chr4_1:64415119-64415138 | None:intergenic | 45.0% | |
| ! | GCAGACAGAGAGAGAAGTTT+TGG | - | chr4_1:64413080-64413099 | None:intergenic | 45.0% |
| GTCTGCTTCTCTGTCCAAAA+TGG | + | chr4_1:64413094-64413113 | Msa0563970:exon | 45.0% | |
| TTTATGGTGGCTACTTGTGC+TGG | + | chr4_1:64413176-64413195 | Msa0563970:CDS | 45.0% | |
| CTTTCCCTTGACAAAGTCTC+TGG | + | chr4_1:64413275-64413294 | Msa0563970:CDS | 45.0% | |
| AGAGCCAGAGACTTTGTCAA+GGG | - | chr4_1:64413282-64413301 | None:intergenic | 45.0% | |
| !! | ATGCAGCTTAAGCTTGTTGC+TGG | + | chr4_1:64413344-64413363 | Msa0563970:CDS | 45.0% |
| GAGTTCTTGGGAAACACAAG+TGG | + | chr4_1:64414531-64414550 | Msa0563970:CDS | 45.0% | |
| TTCTAGTGGGGTCAAACCAA+AGG | - | chr4_1:64414623-64414642 | None:intergenic | 45.0% | |
| TGAGAATCTATTCCAGCCTG+TGG | + | chr4_1:64414857-64414876 | Msa0563970:CDS | 45.0% | |
| CCTGTGGAATGCTGATGATT+GGG | + | chr4_1:64414873-64414892 | Msa0563970:CDS | 45.0% | |
| TTTCACCAATCCACCTCTTG+TGG | - | chr4_1:64414899-64414918 | None:intergenic | 45.0% | |
| !! | GTATGCTGTAAAGGGTGCTT+TGG | - | chr4_1:64414932-64414951 | None:intergenic | 45.0% |
| ! | AGACTTGGTTGAGAACTGAG+TGG | - | chr4_1:64414971-64414990 | None:intergenic | 45.0% |
| GATCTTAAGCGATTCCCACA+AGG | + | chr4_1:64415102-64415121 | Msa0563970:CDS | 45.0% | |
| ACTCAACAGGAACACCTTGT+GGG | - | chr4_1:64415119-64415138 | None:intergenic | 45.0% | |
| CAGAGCCAGAGACTTTGTCA+AGG | - | chr4_1:64413283-64413302 | None:intergenic | 50.0% | |
| ! | CTTGACAAAGTCTCTGGCTC+TGG | + | chr4_1:64413281-64413300 | Msa0563970:CDS | 50.0% |
| TGGTACAGCTGTCATCCCAA+GGG | + | chr4_1:64414484-64414503 | Msa0563970:intron | 50.0% | |
| GTGTTGGGGCTTCCAAATGA+TGG | - | chr4_1:64414661-64414680 | None:intergenic | 50.0% | |
| ATCATCAGCATTCCACAGGC+TGG | - | chr4_1:64414872-64414891 | None:intergenic | 50.0% | |
| GCCTGTGGAATGCTGATGAT+TGG | + | chr4_1:64414872-64414891 | Msa0563970:CDS | 50.0% | |
| CCCAATCATCAGCATTCCAC+AGG | - | chr4_1:64414876-64414895 | None:intergenic | 50.0% | |
| CACTCAACAGGAACACCTTG+TGG | - | chr4_1:64415120-64415139 | None:intergenic | 50.0% | |
| TCCTGTTGAGTGTAGCCACT+AGG | + | chr4_1:64415128-64415147 | Msa0563970:CDS | 50.0% | |
| CAGAGCCAGAGACTTTGTCA+AGG | - | chr4_1:64413283-64413302 | None:intergenic | 50.0% | |
| ! | CTTGACAAAGTCTCTGGCTC+TGG | + | chr4_1:64413281-64413300 | Msa0563970:CDS | 50.0% |
| TGGTACAGCTGTCATCCCAA+GGG | + | chr4_1:64414484-64414503 | Msa0563970:intron | 50.0% | |
| GTGTTGGGGCTTCCAAATGA+TGG | - | chr4_1:64414661-64414680 | None:intergenic | 50.0% | |
| ATCATCAGCATTCCACAGGC+TGG | - | chr4_1:64414872-64414891 | None:intergenic | 50.0% | |
| GCCTGTGGAATGCTGATGAT+TGG | + | chr4_1:64414872-64414891 | Msa0563970:CDS | 50.0% | |
| CCCAATCATCAGCATTCCAC+AGG | - | chr4_1:64414876-64414895 | None:intergenic | 50.0% | |
| CACTCAACAGGAACACCTTG+TGG | - | chr4_1:64415120-64415139 | None:intergenic | 50.0% | |
| TCCTGTTGAGTGTAGCCACT+AGG | + | chr4_1:64415128-64415147 | Msa0563970:CDS | 50.0% | |
| CTTGTTGCTGGCAACTCAGC+TGG | + | chr4_1:64413356-64413375 | Msa0563970:CDS | 55.0% | |
| GTGGTACAGCTGTCATCCCA+AGG | + | chr4_1:64414483-64414502 | Msa0563970:intron | 55.0% | |
| !! | CTCATCATGGGTTGGCCCTT+GGG | - | chr4_1:64414502-64414521 | None:intergenic | 55.0% |
| !! | TCTCATCATGGGTTGGCCCT+TGG | - | chr4_1:64414503-64414522 | None:intergenic | 55.0% |
| GCTGATGATTGGGCCACAAG+AGG | + | chr4_1:64414883-64414902 | Msa0563970:CDS | 55.0% | |
| GATGATTGGGCCACAAGAGG+TGG | + | chr4_1:64414886-64414905 | Msa0563970:CDS | 55.0% | |
| TTGGGCCACAAGAGGTGGAT+TGG | + | chr4_1:64414891-64414910 | Msa0563970:CDS | 55.0% | |
| GCCTAGTGGCTACACTCAAC+AGG | - | chr4_1:64415132-64415151 | None:intergenic | 55.0% | |
| CTTGTTGCTGGCAACTCAGC+TGG | + | chr4_1:64413356-64413375 | Msa0563970:CDS | 55.0% | |
| GTGGTACAGCTGTCATCCCA+AGG | + | chr4_1:64414483-64414502 | Msa0563970:intron | 55.0% | |
| !! | CTCATCATGGGTTGGCCCTT+GGG | - | chr4_1:64414502-64414521 | None:intergenic | 55.0% |
| !! | TCTCATCATGGGTTGGCCCT+TGG | - | chr4_1:64414503-64414522 | None:intergenic | 55.0% |
| GCTGATGATTGGGCCACAAG+AGG | + | chr4_1:64414883-64414902 | Msa0563970:CDS | 55.0% | |
| GATGATTGGGCCACAAGAGG+TGG | + | chr4_1:64414886-64414905 | Msa0563970:CDS | 55.0% | |
| TTGGGCCACAAGAGGTGGAT+TGG | + | chr4_1:64414891-64414910 | Msa0563970:CDS | 55.0% | |
| GCCTAGTGGCTACACTCAAC+AGG | - | chr4_1:64415132-64415151 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 64413071 | 64415350 | 64413071 | ID=Msa0563970;Name=Msa0563970 |
| chr4_1 | mRNA | 64413071 | 64415350 | 64413071 | ID=Msa0563970-mRNA-1;Parent=Msa0563970;Name=Msa0563970-mRNA-1;_AED=0.04;_eAED=0.04;_QI=42|1|1|1|1|1|3|201|283 |
| chr4_1 | exon | 64413071 | 64413397 | 64413071 | ID=Msa0563970-mRNA-1:exon:20608;Parent=Msa0563970-mRNA-1 |
| chr4_1 | exon | 64414492 | 64414685 | 64414492 | ID=Msa0563970-mRNA-1:exon:20609;Parent=Msa0563970-mRNA-1 |
| chr4_1 | exon | 64414777 | 64415350 | 64414777 | ID=Msa0563970-mRNA-1:exon:20610;Parent=Msa0563970-mRNA-1 |
| chr4_1 | five_prime_UTR | 64413071 | 64413112 | 64413071 | ID=Msa0563970-mRNA-1:five_prime_utr;Parent=Msa0563970-mRNA-1 |
| chr4_1 | CDS | 64413113 | 64413397 | 64413113 | ID=Msa0563970-mRNA-1:cds;Parent=Msa0563970-mRNA-1 |
| chr4_1 | CDS | 64414492 | 64414685 | 64414492 | ID=Msa0563970-mRNA-1:cds;Parent=Msa0563970-mRNA-1 |
| chr4_1 | CDS | 64414777 | 64415149 | 64414777 | ID=Msa0563970-mRNA-1:cds;Parent=Msa0563970-mRNA-1 |
| chr4_1 | three_prime_UTR | 64415150 | 64415350 | 64415150 | ID=Msa0563970-mRNA-1:three_prime_utr;Parent=Msa0563970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
