Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700490 | XP_013446617.1 | 93.667 | 300 | 2 | 1 | 1 | 300 | 1 | 283 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700490 | sp|P35694|XTH2_SOYBN | 82.060 | 301 | 35 | 3 | 1 | 300 | 1 | 283 | 1.35e-178 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700490 | A0A072TT00 | 93.667 | 300 | 2 | 1 | 1 | 300 | 1 | 283 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0622910 | Msa0700490 | 0.972059 | 3.754740e-134 | -8.615850e-47 |
| Msa0629440 | Msa0700490 | 0.814661 | 1.375260e-51 | -8.615850e-47 |
| Msa0667070 | Msa0700490 | 0.813745 | 2.190674e-51 | -8.615850e-47 |
| Msa0700490 | Msa0713230 | -0.800966 | 1.124691e-48 | -8.615850e-47 |
| Msa0700490 | Msa1204600 | 0.832375 | 9.798229e-56 | -8.615850e-47 |
| Msa0700490 | Msa1204770 | 0.824697 | 7.012398e-54 | -8.615850e-47 |
| Msa0700490 | Msa1304320 | 0.808069 | 3.712196e-50 | -8.615850e-47 |
| Msa0700490 | Msa1329350 | 0.826473 | 2.660758e-54 | -8.615850e-47 |
| Msa0700490 | Msa1329420 | 0.806515 | 7.925177e-50 | -8.615850e-47 |
| Msa0700490 | Msa1329580 | 0.805244 | 1.465945e-49 | -8.615850e-47 |
| Msa0700490 | Msa1412620 | 0.803457 | 3.455001e-49 | -8.615850e-47 |
| Msa0563970 | Msa0700490 | 0.951924 | 7.287352e-110 | -8.615850e-47 |
| Msa0577320 | Msa0700490 | 0.971768 | 1.097343e-133 | -8.615850e-47 |
| Msa0580540 | Msa0700490 | -0.802831 | 4.655755e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700490 | MtrunA17_Chr8g0377841 | 93.667 | 300 | 2 | 1 | 1 | 300 | 1 | 283 | 0.0 | 578 |
| Msa0700490 | MtrunA17_Chr3g0122021 | 80.208 | 288 | 38 | 3 | 14 | 300 | 10 | 279 | 3.40e-170 | 473 |
| Msa0700490 | MtrunA17_Chr3g0122031 | 80.208 | 288 | 38 | 3 | 14 | 300 | 10 | 279 | 3.87e-170 | 472 |
| Msa0700490 | MtrunA17_Chr8g0389641 | 68.027 | 294 | 40 | 2 | 5 | 298 | 3 | 242 | 1.47e-146 | 411 |
| Msa0700490 | MtrunA17_Chr4g0072611 | 66.782 | 289 | 74 | 2 | 15 | 298 | 9 | 280 | 3.07e-139 | 394 |
| Msa0700490 | MtrunA17_Chr7g0258911 | 65.306 | 294 | 80 | 2 | 10 | 298 | 3 | 279 | 3.10e-137 | 389 |
| Msa0700490 | MtrunA17_Chr4g0072671 | 68.182 | 286 | 65 | 2 | 24 | 300 | 19 | 287 | 6.52e-136 | 386 |
| Msa0700490 | MtrunA17_Chr4g0072601 | 59.736 | 303 | 97 | 3 | 1 | 298 | 1 | 283 | 1.49e-131 | 375 |
| Msa0700490 | MtrunA17_Chr2g0299061 | 63.300 | 297 | 82 | 2 | 12 | 298 | 7 | 286 | 2.18e-131 | 375 |
| Msa0700490 | MtrunA17_Chr4g0071341 | 63.636 | 286 | 80 | 3 | 21 | 299 | 14 | 282 | 2.32e-127 | 364 |
| Msa0700490 | MtrunA17_Chr4g0072681 | 66.807 | 238 | 52 | 2 | 73 | 300 | 25 | 245 | 1.73e-110 | 320 |
| Msa0700490 | MtrunA17_Chr5g0443391 | 50.694 | 288 | 125 | 1 | 11 | 298 | 8 | 278 | 1.30e-101 | 299 |
| Msa0700490 | MtrunA17_Chr7g0252621 | 50.000 | 298 | 120 | 5 | 14 | 300 | 10 | 289 | 5.09e-98 | 290 |
| Msa0700490 | MtrunA17_Chr7g0252631 | 52.174 | 276 | 108 | 4 | 31 | 300 | 32 | 289 | 1.01e-96 | 286 |
| Msa0700490 | MtrunA17_Chr6g0461731 | 48.993 | 298 | 120 | 5 | 16 | 299 | 32 | 311 | 2.07e-96 | 287 |
| Msa0700490 | MtrunA17_Chr6g0461761 | 48.837 | 301 | 122 | 5 | 14 | 300 | 7 | 289 | 2.23e-96 | 286 |
| Msa0700490 | MtrunA17_Chr7g0252601 | 48.026 | 304 | 126 | 5 | 9 | 298 | 2 | 287 | 2.39e-96 | 286 |
| Msa0700490 | MtrunA17_Chr4g0023961 | 45.333 | 300 | 129 | 6 | 15 | 300 | 12 | 290 | 2.81e-91 | 273 |
| Msa0700490 | MtrunA17_Chr3g0096651 | 48.352 | 273 | 122 | 2 | 28 | 298 | 27 | 282 | 6.05e-90 | 269 |
| Msa0700490 | MtrunA17_Chr4g0054431 | 46.735 | 291 | 133 | 4 | 13 | 298 | 14 | 287 | 7.77e-90 | 269 |
| Msa0700490 | MtrunA17_Chr6g0486581 | 46.284 | 296 | 131 | 4 | 12 | 298 | 7 | 283 | 7.78e-90 | 269 |
| Msa0700490 | MtrunA17_Chr4g0054451 | 45.973 | 298 | 138 | 5 | 7 | 298 | 9 | 289 | 8.03e-90 | 269 |
| Msa0700490 | MtrunA17_Chr2g0323161 | 44.000 | 300 | 132 | 6 | 15 | 298 | 7 | 286 | 3.43e-88 | 265 |
| Msa0700490 | MtrunA17_Chr1g0206681 | 45.205 | 292 | 134 | 3 | 15 | 299 | 20 | 292 | 3.97e-86 | 260 |
| Msa0700490 | MtrunA17_Chr1g0206081 | 43.709 | 302 | 143 | 7 | 10 | 299 | 9 | 295 | 5.34e-83 | 252 |
| Msa0700490 | MtrunA17_Chr8g0390201 | 55.556 | 198 | 79 | 4 | 110 | 298 | 12 | 209 | 2.23e-75 | 229 |
| Msa0700490 | MtrunA17_Chr8g0340001 | 42.387 | 243 | 115 | 4 | 62 | 298 | 8 | 231 | 6.81e-65 | 203 |
| Msa0700490 | MtrunA17_Chr7g0264731 | 37.906 | 277 | 145 | 6 | 30 | 299 | 36 | 292 | 1.14e-58 | 189 |
| Msa0700490 | MtrunA17_Chr1g0180451 | 37.681 | 276 | 145 | 6 | 30 | 298 | 39 | 294 | 5.57e-57 | 185 |
| Msa0700490 | MtrunA17_Chr4g0028221 | 38.768 | 276 | 142 | 7 | 30 | 298 | 49 | 304 | 2.25e-56 | 184 |
| Msa0700490 | MtrunA17_Chr2g0327411 | 38.806 | 268 | 137 | 6 | 30 | 289 | 53 | 301 | 1.86e-55 | 182 |
| Msa0700490 | MtrunA17_Chr2g0303861 | 38.491 | 265 | 127 | 8 | 31 | 284 | 29 | 268 | 4.48e-54 | 177 |
| Msa0700490 | MtrunA17_Chr4g0072641 | 65.574 | 122 | 33 | 2 | 178 | 299 | 37 | 149 | 6.18e-51 | 165 |
| Msa0700490 | MtrunA17_Chr8g0375981 | 32.971 | 276 | 163 | 4 | 30 | 298 | 30 | 290 | 2.77e-48 | 164 |
| Msa0700490 | MtrunA17_Chr8g0365231 | 32.895 | 304 | 151 | 9 | 18 | 298 | 37 | 310 | 1.35e-47 | 161 |
| Msa0700490 | MtrunA17_Chr2g0303721 | 34.539 | 304 | 155 | 10 | 5 | 296 | 4 | 275 | 2.26e-47 | 160 |
| Msa0700490 | MtrunA17_Chr5g0410621 | 34.944 | 269 | 144 | 8 | 43 | 299 | 57 | 306 | 7.73e-45 | 155 |
| Msa0700490 | MtrunA17_Chr7g0235541 | 39.535 | 215 | 108 | 6 | 78 | 286 | 1 | 199 | 3.13e-44 | 149 |
| Msa0700490 | MtrunA17_Chr1g0161951 | 33.818 | 275 | 159 | 5 | 31 | 298 | 33 | 291 | 4.52e-44 | 152 |
| Msa0700490 | MtrunA17_Chr8g0382041 | 32.130 | 277 | 163 | 6 | 31 | 298 | 34 | 294 | 3.30e-41 | 145 |
| Msa0700490 | MtrunA17_Chr4g0072631 | 61.333 | 75 | 27 | 1 | 6 | 78 | 4 | 78 | 1.92e-25 | 97.8 |
| Msa0700490 | MtrunA17_Chr8g0374231 | 43.689 | 103 | 50 | 5 | 204 | 299 | 1 | 102 | 3.69e-18 | 78.6 |
| Msa0700490 | MtrunA17_Chr8g0390181 | 48.810 | 84 | 40 | 2 | 13 | 96 | 11 | 91 | 2.28e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700490 | AT3G23730.1 | 69.831 | 295 | 62 | 4 | 14 | 298 | 9 | 286 | 1.61e-153 | 431 |
| Msa0700490 | AT4G14130.1 | 69.625 | 293 | 66 | 3 | 12 | 298 | 9 | 284 | 6.41e-152 | 427 |
| Msa0700490 | AT4G25810.1 | 61.301 | 292 | 89 | 2 | 14 | 298 | 9 | 283 | 9.12e-131 | 373 |
| Msa0700490 | AT5G57550.1 | 58.076 | 291 | 103 | 2 | 12 | 300 | 11 | 284 | 4.28e-126 | 361 |
| Msa0700490 | AT4G30270.1 | 59.310 | 290 | 91 | 3 | 10 | 299 | 4 | 266 | 6.87e-126 | 360 |
| Msa0700490 | AT5G57560.1 | 57.627 | 295 | 100 | 3 | 12 | 298 | 4 | 281 | 1.16e-123 | 355 |
| Msa0700490 | AT5G57540.1 | 59.712 | 278 | 88 | 3 | 28 | 299 | 23 | 282 | 5.36e-122 | 351 |
| Msa0700490 | AT5G57530.1 | 59.075 | 281 | 91 | 3 | 25 | 299 | 21 | 283 | 4.24e-121 | 348 |
| Msa0700490 | AT4G25820.1 | 60.071 | 283 | 89 | 3 | 22 | 298 | 21 | 285 | 1.39e-118 | 342 |
| Msa0700490 | AT5G48070.1 | 56.164 | 292 | 105 | 4 | 12 | 299 | 10 | 282 | 7.38e-117 | 338 |
| Msa0700490 | AT2G18800.1 | 54.698 | 298 | 100 | 4 | 20 | 299 | 17 | 297 | 6.41e-116 | 336 |
| Msa0700490 | AT4G30280.1 | 56.164 | 292 | 105 | 4 | 12 | 299 | 10 | 282 | 1.30e-107 | 314 |
| Msa0700490 | AT4G30290.1 | 55.822 | 292 | 106 | 4 | 12 | 299 | 5 | 277 | 8.91e-107 | 312 |
| Msa0700490 | AT1G65310.2 | 58.696 | 276 | 91 | 4 | 28 | 299 | 48 | 304 | 1.12e-105 | 310 |
| Msa0700490 | AT1G65310.1 | 58.696 | 276 | 91 | 4 | 28 | 299 | 26 | 282 | 1.24e-105 | 309 |
| Msa0700490 | AT5G13870.2 | 49.829 | 293 | 120 | 5 | 15 | 298 | 13 | 287 | 7.48e-94 | 280 |
| Msa0700490 | AT5G13870.1 | 49.829 | 293 | 120 | 5 | 15 | 298 | 13 | 287 | 7.48e-94 | 280 |
| Msa0700490 | AT5G13870.3 | 49.829 | 293 | 120 | 5 | 15 | 298 | 13 | 287 | 7.48e-94 | 280 |
| Msa0700490 | AT4G03210.1 | 47.138 | 297 | 129 | 6 | 12 | 300 | 10 | 286 | 5.73e-93 | 277 |
| Msa0700490 | AT2G06850.1 | 51.087 | 276 | 111 | 4 | 31 | 300 | 35 | 292 | 1.49e-92 | 276 |
| Msa0700490 | AT5G65730.1 | 44.863 | 292 | 138 | 5 | 12 | 298 | 17 | 290 | 4.89e-88 | 265 |
| Msa0700490 | AT4G37800.1 | 44.518 | 301 | 144 | 5 | 5 | 299 | 7 | 290 | 2.22e-87 | 263 |
| Msa0700490 | AT4G28850.1 | 44.966 | 298 | 135 | 3 | 12 | 299 | 10 | 288 | 7.21e-86 | 259 |
| Msa0700490 | AT2G06850.2 | 52.033 | 246 | 94 | 4 | 61 | 300 | 5 | 232 | 4.27e-85 | 255 |
| Msa0700490 | AT4G03210.2 | 51.220 | 246 | 94 | 5 | 63 | 300 | 31 | 258 | 4.73e-85 | 256 |
| Msa0700490 | AT1G11545.1 | 43.226 | 310 | 148 | 7 | 1 | 299 | 8 | 300 | 4.26e-83 | 253 |
| Msa0700490 | AT2G14620.1 | 42.088 | 297 | 148 | 4 | 10 | 299 | 16 | 295 | 1.51e-81 | 249 |
| Msa0700490 | AT2G14620.2 | 44.534 | 247 | 113 | 4 | 60 | 299 | 16 | 245 | 8.74e-73 | 224 |
| Msa0700490 | AT2G14620.3 | 44.492 | 236 | 107 | 3 | 71 | 299 | 16 | 234 | 1.32e-70 | 219 |
| Msa0700490 | AT4G13090.1 | 39.404 | 302 | 150 | 7 | 11 | 298 | 6 | 288 | 1.71e-68 | 215 |
| Msa0700490 | AT3G25050.1 | 38.989 | 277 | 140 | 5 | 30 | 298 | 34 | 289 | 3.00e-67 | 212 |
| Msa0700490 | AT4G13080.1 | 41.026 | 273 | 136 | 6 | 31 | 298 | 39 | 291 | 1.39e-65 | 207 |
| Msa0700490 | AT2G36870.1 | 38.406 | 276 | 143 | 6 | 30 | 298 | 42 | 297 | 8.63e-57 | 185 |
| Msa0700490 | AT3G44990.1 | 39.130 | 276 | 139 | 9 | 31 | 298 | 39 | 293 | 4.75e-53 | 175 |
| Msa0700490 | AT1G32170.1 | 33.333 | 312 | 172 | 9 | 3 | 298 | 2 | 293 | 1.01e-48 | 166 |
| Msa0700490 | AT1G10550.1 | 32.847 | 274 | 135 | 6 | 50 | 298 | 60 | 309 | 1.16e-47 | 162 |
| Msa0700490 | AT1G14720.1 | 34.420 | 276 | 157 | 6 | 31 | 298 | 31 | 290 | 3.64e-45 | 156 |
| Msa0700490 | AT2G01850.1 | 32.852 | 277 | 147 | 6 | 30 | 290 | 30 | 283 | 6.59e-44 | 153 |
| Msa0700490 | AT3G48580.1 | 31.618 | 272 | 146 | 9 | 37 | 298 | 32 | 273 | 1.10e-37 | 135 |
| Msa0700490 | AT4G18990.1 | 32.117 | 274 | 135 | 7 | 53 | 298 | 62 | 312 | 2.65e-37 | 136 |
| Msa0700490 | AT4G18990.2 | 33.498 | 203 | 106 | 5 | 120 | 298 | 41 | 238 | 1.38e-32 | 122 |
| Msa0700490 | AT3G48580.3 | 30.579 | 242 | 135 | 8 | 60 | 298 | 3 | 214 | 1.45e-32 | 120 |
| Msa0700490 | AT2G36870.2 | 37.255 | 153 | 75 | 3 | 30 | 177 | 42 | 178 | 2.13e-27 | 105 |
| Msa0700490 | AT3G48580.2 | 28.938 | 273 | 132 | 11 | 37 | 298 | 32 | 253 | 8.08e-23 | 95.5 |
Find 87 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATAATGGTTAGCTTTA+TGG | 0.091663 | 4_4:+71536810 | Msa0700490:CDS |
| ACATTCTTGAATACCCTTAT+TGG | 0.161725 | 4_4:-71538472 | None:intergenic |
| ATTCTCATTGGTTGGTTCTT+TGG | 0.193461 | 4_4:-71538517 | None:intergenic |
| TCAAAGAGAGAGTACCTATT+TGG | 0.231310 | 4_4:+71536961 | Msa0700490:CDS |
| TGGTTGATAACATGCCAATA+AGG | 0.266753 | 4_4:+71538458 | Msa0700490:CDS |
| ATATTTGTGTGAAGAATATA+AGG | 0.297093 | 4_4:-71538234 | None:intergenic |
| GTTTATGCTAATTGCTATAA+TGG | 0.308914 | 4_4:+71536798 | Msa0700490:CDS |
| TAGCCACTAGGCACTTTATA+AGG | 0.315025 | 4_4:+71538816 | Msa0700490:exon |
| CTCATCATGGGTTGGCCCTT+GGG | 0.318423 | 4_4:-71538175 | None:intergenic |
| TGGATTTAACTGCAGATTCT+TGG | 0.319730 | 4_4:+71538438 | Msa0700490:intron |
| ATAGTTGTTAATGTACATTA+AGG | 0.323492 | 4_4:+71538968 | Msa0700490:three_prime_UTR |
| TCCACACTTACTCCATCATT+TGG | 0.354596 | 4_4:+71538322 | Msa0700490:CDS |
| TTCAAGAATGTTGAATCTAT+TGG | 0.357714 | 4_4:+71538484 | Msa0700490:CDS |
| ATAAATGCGCTTGATGCTTA+TGG | 0.368751 | 4_4:+71538700 | Msa0700490:CDS |
| GAGAACAACAATTCTACCTT+TGG | 0.383624 | 4_4:+71538280 | Msa0700490:CDS |
| TCTCATCATGGGTTGGCCCT+TGG | 0.389738 | 4_4:-71538176 | None:intergenic |
| AAGAGTACCAGAATTGAAAA+TGG | 0.390935 | 4_4:-71537084 | None:intergenic |
| GCATATCAATTCTCCCAAAT+AGG | 0.393235 | 4_4:-71536975 | None:intergenic |
| CAAAGAGAGAGTACCTATTT+GGG | 0.397766 | 4_4:+71536962 | Msa0700490:CDS |
| GCCTGTGGAATGCTGATGAT+TGG | 0.400428 | 4_4:+71538548 | Msa0700490:CDS |
| ATTGGTTGGTTCTTTGGAAA+AGG | 0.403105 | 4_4:-71538511 | None:intergenic |
| ACTGAGTGGCCTTGAAATTA+CGG | 0.411712 | 4_4:-71538630 | None:intergenic |
| CTTGACAAAGTCTCTGGCTC+TGG | 0.412130 | 4_4:+71536931 | Msa0700490:CDS |
| AGTTGGATTAATCATTTCAA+TGG | 0.414765 | 4_4:+71538871 | Msa0700490:three_prime_UTR |
| TAGTTGTTAATGTACATTAA+GGG | 0.422289 | 4_4:+71538969 | Msa0700490:three_prime_UTR |
| GCCTAGTGGCTACACTCAAC+AGG | 0.435642 | 4_4:-71538805 | None:intergenic |
| CTTTCCCTTGACAAAGTCTC+TGG | 0.439703 | 4_4:+71536925 | Msa0700490:CDS |
| CTTGTTGCTGGCAACTCAGC+TGG | 0.440806 | 4_4:+71537006 | Msa0700490:CDS |
| ATGCAGCTTAAGCTTGTTGC+TGG | 0.445241 | 4_4:+71536994 | Msa0700490:CDS |
| TGTATAAAAGTGATTATAGT+AGG | 0.446990 | 4_4:-71537061 | None:intergenic |
| GTATGCTGTAAAGGGTGCTT+TGG | 0.447810 | 4_4:-71538605 | None:intergenic |
| ATTACGGTAGTATGCTGTAA+AGG | 0.449817 | 4_4:-71538614 | None:intergenic |
| AGCATACTACCGTAATTTCA+AGG | 0.452720 | 4_4:+71538621 | Msa0700490:CDS |
| GGTTGATAACATGCCAATAA+GGG | 0.455271 | 4_4:+71538459 | Msa0700490:CDS |
| GTTCAAATTCTGATGCTGAA+TGG | 0.458018 | 4_4:+71538674 | Msa0700490:CDS |
| ACTCAAAATCAATCTCATCA+TGG | 0.481396 | 4_4:-71538188 | None:intergenic |
| AGGCTGGAATAGATTCTCAT+TGG | 0.482882 | 4_4:-71538529 | None:intergenic |
| AGTGACTTACATGATGTGTT+GGG | 0.486675 | 4_4:-71538349 | None:intergenic |
| TTTCACCAATCCACCTCTTG+TGG | 0.492660 | 4_4:-71538572 | None:intergenic |
| TGGAATAGATTCTCATTGGT+TGG | 0.493361 | 4_4:-71538525 | None:intergenic |
| TTTATGGTGGCTACTTGTGC+TGG | 0.495035 | 4_4:+71536826 | Msa0700490:CDS |
| ATCATCAGCATTCCACAGGC+TGG | 0.499092 | 4_4:-71538545 | None:intergenic |
| CTCAAAATCAATCTCATCAT+GGG | 0.501697 | 4_4:-71538187 | None:intergenic |
| CCTGTGGAATGCTGATGATT+GGG | 0.507771 | 4_4:+71538549 | Msa0700490:CDS |
| GTGGTACAGCTGTCATCCCA+AGG | 0.509097 | 4_4:+71538159 | Msa0700490:intron |
| TTACGGTAGTATGCTGTAAA+GGG | 0.510381 | 4_4:-71538613 | None:intergenic |
| AATATCTTTACTCAAGGTAA+AGG | 0.513107 | 4_4:+71538252 | Msa0700490:CDS |
| ATTTGAACTTAAAGAAGACT+TGG | 0.523911 | 4_4:-71538659 | None:intergenic |
| CACTCAACAGGAACACCTTG+TGG | 0.524101 | 4_4:-71538793 | None:intergenic |
| ACCAAGACTTTGATCTAACA+TGG | 0.525267 | 4_4:+71536857 | Msa0700490:CDS |
| ACTCAACAGGAACACCTTGT+GGG | 0.532653 | 4_4:-71538792 | None:intergenic |
| AACCGTGCTAAGATATTCAA+TGG | 0.538829 | 4_4:+71536886 | Msa0700490:CDS |
| GTGTTGGGGCTTCCAAATGA+TGG | 0.542384 | 4_4:-71538334 | None:intergenic |
| ATGGTAGAAGAAGATTGAGA+TGG | 0.542822 | 4_4:+71538719 | Msa0700490:CDS |
| CCCAATCATCAGCATTCCAC+AGG | 0.544118 | 4_4:-71538549 | None:intergenic |
| TCCTGTTGAGTGTAGCCACT+AGG | 0.556001 | 4_4:+71538804 | Msa0700490:CDS |
| AGTTGTTAATGTACATTAAG+GGG | 0.558771 | 4_4:+71538970 | Msa0700490:three_prime_UTR |
| CCCATGTTAGATCAAAGTCT+TGG | 0.564659 | 4_4:-71536858 | None:intergenic |
| CACACAAATATCTTTACTCA+AGG | 0.572059 | 4_4:+71538246 | Msa0700490:CDS |
| TTCTAGTGGGGTCAAACCAA+AGG | 0.574586 | 4_4:-71538296 | None:intergenic |
| TATAATGGTTAGCTTTATGG+TGG | 0.576994 | 4_4:+71536813 | Msa0700490:CDS |
| AAATCAATCTCATCATGGGT+TGG | 0.583038 | 4_4:-71538183 | None:intergenic |
| TTGGGCCACAAGAGGTGGAT+TGG | 0.585521 | 4_4:+71538567 | Msa0700490:CDS |
| TGGTAGAAGAAGATTGAGAT+GGG | 0.586469 | 4_4:+71538720 | Msa0700490:CDS |
| GATGATTGGGCCACAAGAGG+TGG | 0.588016 | 4_4:+71538562 | Msa0700490:CDS |
| TAAGTGTGGAAGTTTCTAGT+GGG | 0.590801 | 4_4:-71538309 | None:intergenic |
| CAGAGCCAGAGACTTTGTCA+AGG | 0.592607 | 4_4:-71536930 | None:intergenic |
| TCCAAATGATGGAGTAAGTG+TGG | 0.592696 | 4_4:-71538323 | None:intergenic |
| GTGGATTGGTGAAAACTGAT+TGG | 0.593499 | 4_4:+71538581 | Msa0700490:CDS |
| TAGTGACTTACATGATGTGT+TGG | 0.593803 | 4_4:-71538350 | None:intergenic |
| CACATGAAACTCATTGTGAG+TGG | 0.603766 | 4_4:-71536776 | None:intergenic |
| CACCATTGAATATCTTAGCA+CGG | 0.605044 | 4_4:-71536888 | None:intergenic |
| CCAAGACTTTGATCTAACAT+GGG | 0.605585 | 4_4:+71536858 | Msa0700490:CDS |
| GAGTTCTTGGGAAACACAAG+TGG | 0.615147 | 4_4:+71538207 | Msa0700490:CDS |
| TGAGAATCTATTCCAGCCTG+TGG | 0.616171 | 4_4:+71538533 | Msa0700490:CDS |
| TATTTGTGTGAAGAATATAA+GGG | 0.617384 | 4_4:-71538233 | None:intergenic |
| AGAGCCAGAGACTTTGTCAA+GGG | 0.627053 | 4_4:-71536929 | None:intergenic |
| GTAAGTGTGGAAGTTTCTAG+TGG | 0.637553 | 4_4:-71538310 | None:intergenic |
| GTGACTTACATGATGTGTTG+GGG | 0.642539 | 4_4:-71538348 | None:intergenic |
| GCTGATGATTGGGCCACAAG+AGG | 0.655452 | 4_4:+71538559 | Msa0700490:CDS |
| TGGTACAGCTGTCATCCCAA+GGG | 0.668640 | 4_4:+71538160 | Msa0700490:intron |
| GATCTTAAGCGATTCCCACA+AGG | 0.682204 | 4_4:+71538778 | Msa0700490:CDS |
| CAAGACTTTGATCTAACATG+GGG | 0.690513 | 4_4:+71536859 | Msa0700490:CDS |
| CGTGCTAAGATATTCAATGG+TGG | 0.692895 | 4_4:+71536889 | Msa0700490:CDS |
| AAGTGTGGAAGTTTCTAGTG+GGG | 0.697172 | 4_4:-71538308 | None:intergenic |
| GAACCTTATAAAGTGCCTAG+TGG | 0.721452 | 4_4:-71538819 | None:intergenic |
| AGACTTGGTTGAGAACTGAG+TGG | 0.735795 | 4_4:-71538644 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAATATCTTAGATAT+TGG | + | chr4_4:71537811-71537830 | Msa0700490:intron | 10.0% |
| !!! | ATTAATTTATAAATTTGTTG+TGG | + | chr4_4:71538140-71538159 | Msa0700490:intron | 10.0% |
| !! | ATTAAAAATATCTTAGATAT+TGG | + | chr4_4:71537811-71537830 | Msa0700490:intron | 10.0% |
| !!! | ATTAATTTATAAATTTGTTG+TGG | + | chr4_4:71538140-71538159 | Msa0700490:intron | 10.0% |
| !! | GATTTATAAAGTAAAAACAA+GGG | - | chr4_4:71537311-71537330 | None:intergenic | 15.0% |
| !! | AGATTTATAAAGTAAAAACA+AGG | - | chr4_4:71537312-71537331 | None:intergenic | 15.0% |
| !!! | TTGGTCTTTTTTTTTAAAAA+TGG | + | chr4_4:71537664-71537683 | Msa0700490:intron | 15.0% |
| !! | ATTTAATGACGAAAATATAA+TGG | + | chr4_4:71537777-71537796 | Msa0700490:intron | 15.0% |
| !! | ATCTAACTAAATTATTGATA+TGG | - | chr4_4:71538122-71538141 | None:intergenic | 15.0% |
| !!! | AAAAATTTTACTTCTAAAGT+TGG | + | chr4_4:71538854-71538873 | Msa0700490:three_prime_UTR | 15.0% |
| !! | GATTTATAAAGTAAAAACAA+GGG | - | chr4_4:71537311-71537330 | None:intergenic | 15.0% |
| !! | AGATTTATAAAGTAAAAACA+AGG | - | chr4_4:71537312-71537331 | None:intergenic | 15.0% |
| !!! | TTGGTCTTTTTTTTTAAAAA+TGG | + | chr4_4:71537664-71537683 | Msa0700490:intron | 15.0% |
| !! | ATTTAATGACGAAAATATAA+TGG | + | chr4_4:71537777-71537796 | Msa0700490:intron | 15.0% |
| !! | ATCTAACTAAATTATTGATA+TGG | - | chr4_4:71538122-71538141 | None:intergenic | 15.0% |
| !!! | AAAAATTTTACTTCTAAAGT+TGG | + | chr4_4:71538854-71538873 | Msa0700490:three_prime_UTR | 15.0% |
| !! | TGTATAAAAGTGATTATAGT+AGG | - | chr4_4:71537064-71537083 | None:intergenic | 20.0% |
| !! | TTTATGTACATTAATCAACT+TGG | + | chr4_4:71537645-71537664 | Msa0700490:intron | 20.0% |
| !!! | AATATAGTTAATGTTGACTT+TGG | + | chr4_4:71537717-71537736 | Msa0700490:intron | 20.0% |
| !! | TATGTGTTAAATATCCATAT+TGG | - | chr4_4:71537860-71537879 | None:intergenic | 20.0% |
| !! | ATCTTGAAATTTAACCAATA+TGG | + | chr4_4:71537987-71538006 | Msa0700490:intron | 20.0% |
| !! | TATGAAATTATGTGAAGAAT+CGG | - | chr4_4:71538034-71538053 | None:intergenic | 20.0% |
| !! | TATTTGTGTGAAGAATATAA+GGG | - | chr4_4:71538236-71538255 | None:intergenic | 20.0% |
| !! | ATATTTGTGTGAAGAATATA+AGG | - | chr4_4:71538237-71538256 | None:intergenic | 20.0% |
| !! | ATAGTTGTTAATGTACATTA+AGG | + | chr4_4:71538968-71538987 | Msa0700490:three_prime_UTR | 20.0% |
| !! | TAGTTGTTAATGTACATTAA+GGG | + | chr4_4:71538969-71538988 | Msa0700490:three_prime_UTR | 20.0% |
| !! | TGTATAAAAGTGATTATAGT+AGG | - | chr4_4:71537064-71537083 | None:intergenic | 20.0% |
| !! | TTTATGTACATTAATCAACT+TGG | + | chr4_4:71537645-71537664 | Msa0700490:intron | 20.0% |
| !!! | AATATAGTTAATGTTGACTT+TGG | + | chr4_4:71537717-71537736 | Msa0700490:intron | 20.0% |
| !! | TATGTGTTAAATATCCATAT+TGG | - | chr4_4:71537860-71537879 | None:intergenic | 20.0% |
| !! | ATCTTGAAATTTAACCAATA+TGG | + | chr4_4:71537987-71538006 | Msa0700490:intron | 20.0% |
| !! | TATGAAATTATGTGAAGAAT+CGG | - | chr4_4:71538034-71538053 | None:intergenic | 20.0% |
| !! | TATTTGTGTGAAGAATATAA+GGG | - | chr4_4:71538236-71538255 | None:intergenic | 20.0% |
| !! | ATATTTGTGTGAAGAATATA+AGG | - | chr4_4:71538237-71538256 | None:intergenic | 20.0% |
| !! | ATAGTTGTTAATGTACATTA+AGG | + | chr4_4:71538968-71538987 | Msa0700490:three_prime_UTR | 20.0% |
| !! | TAGTTGTTAATGTACATTAA+GGG | + | chr4_4:71538969-71538988 | Msa0700490:three_prime_UTR | 20.0% |
| ! | GTTTATGCTAATTGCTATAA+TGG | + | chr4_4:71536798-71536817 | Msa0700490:CDS | 25.0% |
| !! | TTATACACCATTTTCAATTC+TGG | + | chr4_4:71537077-71537096 | Msa0700490:CDS | 25.0% |
| ! | ATACAACAAGGTTATAATGA+TGG | - | chr4_4:71537126-71537145 | None:intergenic | 25.0% |
| ! | TGAAGAATCAATACTAAAGT+TGG | - | chr4_4:71537441-71537460 | None:intergenic | 25.0% |
| !!! | ACTTTAGTATTGATTCTTCA+AGG | + | chr4_4:71537441-71537460 | Msa0700490:intron | 25.0% |
| !! | TAAGTTTCAAATGGATGTTT+TGG | - | chr4_4:71537744-71537763 | None:intergenic | 25.0% |
| !! | AATGACGAAAATATAATGGA+TGG | + | chr4_4:71537781-71537800 | Msa0700490:intron | 25.0% |
| ! | AATATCTTTACTCAAGGTAA+AGG | + | chr4_4:71538252-71538271 | Msa0700490:CDS | 25.0% |
| ! | CATTAGTTACTTAATGCTTA+AGG | - | chr4_4:71538411-71538430 | None:intergenic | 25.0% |
| ! | TAAGTAACTAATGCATGAAT+TGG | + | chr4_4:71538418-71538437 | Msa0700490:intron | 25.0% |
| ! | TTCAAGAATGTTGAATCTAT+TGG | + | chr4_4:71538484-71538503 | Msa0700490:CDS | 25.0% |
| ! | ATTTGAACTTAAAGAAGACT+TGG | - | chr4_4:71538662-71538681 | None:intergenic | 25.0% |
| ! | AGTTGGATTAATCATTTCAA+TGG | + | chr4_4:71538871-71538890 | Msa0700490:three_prime_UTR | 25.0% |
| ! | AGTTGTTAATGTACATTAAG+GGG | + | chr4_4:71538970-71538989 | Msa0700490:three_prime_UTR | 25.0% |
| ! | GTTTATGCTAATTGCTATAA+TGG | + | chr4_4:71536798-71536817 | Msa0700490:CDS | 25.0% |
| !! | TTATACACCATTTTCAATTC+TGG | + | chr4_4:71537077-71537096 | Msa0700490:CDS | 25.0% |
| ! | ATACAACAAGGTTATAATGA+TGG | - | chr4_4:71537126-71537145 | None:intergenic | 25.0% |
| ! | TGAAGAATCAATACTAAAGT+TGG | - | chr4_4:71537441-71537460 | None:intergenic | 25.0% |
| !!! | ACTTTAGTATTGATTCTTCA+AGG | + | chr4_4:71537441-71537460 | Msa0700490:intron | 25.0% |
| !! | TAAGTTTCAAATGGATGTTT+TGG | - | chr4_4:71537744-71537763 | None:intergenic | 25.0% |
| !! | AATGACGAAAATATAATGGA+TGG | + | chr4_4:71537781-71537800 | Msa0700490:intron | 25.0% |
| ! | AATATCTTTACTCAAGGTAA+AGG | + | chr4_4:71538252-71538271 | Msa0700490:CDS | 25.0% |
| ! | CATTAGTTACTTAATGCTTA+AGG | - | chr4_4:71538411-71538430 | None:intergenic | 25.0% |
| ! | TAAGTAACTAATGCATGAAT+TGG | + | chr4_4:71538418-71538437 | Msa0700490:intron | 25.0% |
| ! | TTCAAGAATGTTGAATCTAT+TGG | + | chr4_4:71538484-71538503 | Msa0700490:CDS | 25.0% |
| ! | ATTTGAACTTAAAGAAGACT+TGG | - | chr4_4:71538662-71538681 | None:intergenic | 25.0% |
| ! | AGTTGGATTAATCATTTCAA+TGG | + | chr4_4:71538871-71538890 | Msa0700490:three_prime_UTR | 25.0% |
| ! | AGTTGTTAATGTACATTAAG+GGG | + | chr4_4:71538970-71538989 | Msa0700490:three_prime_UTR | 25.0% |
| !! | TGCTATAATGGTTAGCTTTA+TGG | + | chr4_4:71536810-71536829 | Msa0700490:CDS | 30.0% |
| !! | TATAATGGTTAGCTTTATGG+TGG | + | chr4_4:71536813-71536832 | Msa0700490:CDS | 30.0% |
| !! | AAGAGTACCAGAATTGAAAA+TGG | - | chr4_4:71537087-71537106 | None:intergenic | 30.0% |
| !! | GGTTATAATGATGGATGAAA+TGG | - | chr4_4:71537117-71537136 | None:intergenic | 30.0% |
| AGCATGTATATGATACAACA+AGG | - | chr4_4:71537138-71537157 | None:intergenic | 30.0% | |
| ATAAGCTCTTCAGAAATAGT+AGG | - | chr4_4:71537246-71537265 | None:intergenic | 30.0% | |
| !! | TAGGTCAATAATGGTCTTAT+TGG | - | chr4_4:71537486-71537505 | None:intergenic | 30.0% |
| GTGTAAAAGTAGGTCAATAA+TGG | - | chr4_4:71537495-71537514 | None:intergenic | 30.0% | |
| GTTGTCTAATGTGTAAAAGT+AGG | - | chr4_4:71537505-71537524 | None:intergenic | 30.0% | |
| !! | TGCACAGTTTAATTTGACAA+AGG | - | chr4_4:71537530-71537549 | None:intergenic | 30.0% |
| ACATATGTATGATAGCAACA+TGG | - | chr4_4:71537626-71537645 | None:intergenic | 30.0% | |
| ! | TAATTTTACTTTCTCGTGAC+AGG | + | chr4_4:71537692-71537711 | Msa0700490:intron | 30.0% |
| ! | AATTTTACTTTCTCGTGACA+GGG | + | chr4_4:71537693-71537712 | Msa0700490:intron | 30.0% |
| CTACAAGCTTAAGTTTCAAA+TGG | - | chr4_4:71537753-71537772 | None:intergenic | 30.0% | |
| AACTCAACTCTAATCCAATA+TGG | + | chr4_4:71537843-71537862 | Msa0700490:intron | 30.0% | |
| TTGATATGGCAATACCAAAA+AGG | - | chr4_4:71538108-71538127 | None:intergenic | 30.0% | |
| CTCAAAATCAATCTCATCAT+GGG | - | chr4_4:71538190-71538209 | None:intergenic | 30.0% | |
| ACTCAAAATCAATCTCATCA+TGG | - | chr4_4:71538191-71538210 | None:intergenic | 30.0% | |
| !!! | TGAGATTGATTTTGAGTTCT+TGG | + | chr4_4:71538194-71538213 | Msa0700490:CDS | 30.0% |
| !!! | GAGATTGATTTTGAGTTCTT+GGG | + | chr4_4:71538195-71538214 | Msa0700490:CDS | 30.0% |
| CACACAAATATCTTTACTCA+AGG | + | chr4_4:71538246-71538265 | Msa0700490:CDS | 30.0% | |
| ACATTCTTGAATACCCTTAT+TGG | - | chr4_4:71538475-71538494 | None:intergenic | 30.0% | |
| !! | TGCTATAATGGTTAGCTTTA+TGG | + | chr4_4:71536810-71536829 | Msa0700490:CDS | 30.0% |
| !! | TATAATGGTTAGCTTTATGG+TGG | + | chr4_4:71536813-71536832 | Msa0700490:CDS | 30.0% |
| !! | AAGAGTACCAGAATTGAAAA+TGG | - | chr4_4:71537087-71537106 | None:intergenic | 30.0% |
| !! | GGTTATAATGATGGATGAAA+TGG | - | chr4_4:71537117-71537136 | None:intergenic | 30.0% |
| AGCATGTATATGATACAACA+AGG | - | chr4_4:71537138-71537157 | None:intergenic | 30.0% | |
| ATAAGCTCTTCAGAAATAGT+AGG | - | chr4_4:71537246-71537265 | None:intergenic | 30.0% | |
| !! | TAGGTCAATAATGGTCTTAT+TGG | - | chr4_4:71537486-71537505 | None:intergenic | 30.0% |
| GTGTAAAAGTAGGTCAATAA+TGG | - | chr4_4:71537495-71537514 | None:intergenic | 30.0% | |
| GTTGTCTAATGTGTAAAAGT+AGG | - | chr4_4:71537505-71537524 | None:intergenic | 30.0% | |
| !! | TGCACAGTTTAATTTGACAA+AGG | - | chr4_4:71537530-71537549 | None:intergenic | 30.0% |
| ACATATGTATGATAGCAACA+TGG | - | chr4_4:71537626-71537645 | None:intergenic | 30.0% | |
| ! | TAATTTTACTTTCTCGTGAC+AGG | + | chr4_4:71537692-71537711 | Msa0700490:intron | 30.0% |
| ! | AATTTTACTTTCTCGTGACA+GGG | + | chr4_4:71537693-71537712 | Msa0700490:intron | 30.0% |
| CTACAAGCTTAAGTTTCAAA+TGG | - | chr4_4:71537753-71537772 | None:intergenic | 30.0% | |
| AACTCAACTCTAATCCAATA+TGG | + | chr4_4:71537843-71537862 | Msa0700490:intron | 30.0% | |
| TTGATATGGCAATACCAAAA+AGG | - | chr4_4:71538108-71538127 | None:intergenic | 30.0% | |
| CTCAAAATCAATCTCATCAT+GGG | - | chr4_4:71538190-71538209 | None:intergenic | 30.0% | |
| ACTCAAAATCAATCTCATCA+TGG | - | chr4_4:71538191-71538210 | None:intergenic | 30.0% | |
| !!! | TGAGATTGATTTTGAGTTCT+TGG | + | chr4_4:71538194-71538213 | Msa0700490:CDS | 30.0% |
| !!! | GAGATTGATTTTGAGTTCTT+GGG | + | chr4_4:71538195-71538214 | Msa0700490:CDS | 30.0% |
| CACACAAATATCTTTACTCA+AGG | + | chr4_4:71538246-71538265 | Msa0700490:CDS | 30.0% | |
| ACATTCTTGAATACCCTTAT+TGG | - | chr4_4:71538475-71538494 | None:intergenic | 30.0% | |
| ACCAAGACTTTGATCTAACA+TGG | + | chr4_4:71536857-71536876 | Msa0700490:CDS | 35.0% | |
| CCAAGACTTTGATCTAACAT+GGG | + | chr4_4:71536858-71536877 | Msa0700490:CDS | 35.0% | |
| CAAGACTTTGATCTAACATG+GGG | + | chr4_4:71536859-71536878 | Msa0700490:CDS | 35.0% | |
| AACCGTGCTAAGATATTCAA+TGG | + | chr4_4:71536886-71536905 | Msa0700490:CDS | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | - | chr4_4:71536891-71536910 | None:intergenic | 35.0% | |
| !! | TCAAAGAGAGAGTACCTATT+TGG | + | chr4_4:71536961-71536980 | Msa0700490:CDS | 35.0% |
| !! | CAAAGAGAGAGTACCTATTT+GGG | + | chr4_4:71536962-71536981 | Msa0700490:CDS | 35.0% |
| GCATATCAATTCTCCCAAAT+AGG | - | chr4_4:71536978-71536997 | None:intergenic | 35.0% | |
| ! | ATTTTACTTTCTCGTGACAG+GGG | + | chr4_4:71537694-71537713 | Msa0700490:intron | 35.0% |
| CACTTTAGATGTTTCGTTCT+AGG | - | chr4_4:71537896-71537915 | None:intergenic | 35.0% | |
| ! | CATCTAAAGTGTGATTGAGA+TGG | + | chr4_4:71537905-71537924 | Msa0700490:intron | 35.0% |
| TGATTGAGATGGTTTGATAG+TGG | + | chr4_4:71537916-71537935 | Msa0700490:intron | 35.0% | |
| ! | AACTCTATTAACGAGGTGTT+GGG | - | chr4_4:71537960-71537979 | None:intergenic | 35.0% |
| AAACTCTATTAACGAGGTGT+TGG | - | chr4_4:71537961-71537980 | None:intergenic | 35.0% | |
| GATGTCAAACTCTATTAACG+AGG | - | chr4_4:71537967-71537986 | None:intergenic | 35.0% | |
| !! | TTAACCAATATGGTGTTGTG+TGG | + | chr4_4:71537997-71538016 | Msa0700490:intron | 35.0% |
| !! | TAACCAATATGGTGTTGTGT+GGG | + | chr4_4:71537998-71538017 | Msa0700490:intron | 35.0% |
| ! | AAGGAAAGGGACTTTTCTTT+GGG | - | chr4_4:71538089-71538108 | None:intergenic | 35.0% |
| ! | AAAGGAAAGGGACTTTTCTT+TGG | - | chr4_4:71538090-71538109 | None:intergenic | 35.0% |
| ! | AGAAAAGTCCCTTTCCTTTT+TGG | + | chr4_4:71538091-71538110 | Msa0700490:intron | 35.0% |
| TGGCAATACCAAAAAGGAAA+GGG | - | chr4_4:71538102-71538121 | None:intergenic | 35.0% | |
| ATGGCAATACCAAAAAGGAA+AGG | - | chr4_4:71538103-71538122 | None:intergenic | 35.0% | |
| AAATCAATCTCATCATGGGT+TGG | - | chr4_4:71538186-71538205 | None:intergenic | 35.0% | |
| GAGAACAACAATTCTACCTT+TGG | + | chr4_4:71538280-71538299 | Msa0700490:CDS | 35.0% | |
| !! | TAAGTGTGGAAGTTTCTAGT+GGG | - | chr4_4:71538312-71538331 | None:intergenic | 35.0% |
| AGTGACTTACATGATGTGTT+GGG | - | chr4_4:71538352-71538371 | None:intergenic | 35.0% | |
| TAGTGACTTACATGATGTGT+TGG | - | chr4_4:71538353-71538372 | None:intergenic | 35.0% | |
| TGGATTTAACTGCAGATTCT+TGG | + | chr4_4:71538438-71538457 | Msa0700490:intron | 35.0% | |
| !! | TGGTTGATAACATGCCAATA+AGG | + | chr4_4:71538458-71538477 | Msa0700490:CDS | 35.0% |
| !! | GGTTGATAACATGCCAATAA+GGG | + | chr4_4:71538459-71538478 | Msa0700490:CDS | 35.0% |
| ! | ATTGGTTGGTTCTTTGGAAA+AGG | - | chr4_4:71538514-71538533 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | - | chr4_4:71538520-71538539 | None:intergenic | 35.0% |
| TGGAATAGATTCTCATTGGT+TGG | - | chr4_4:71538528-71538547 | None:intergenic | 35.0% | |
| TTACGGTAGTATGCTGTAAA+GGG | - | chr4_4:71538616-71538635 | None:intergenic | 35.0% | |
| ATTACGGTAGTATGCTGTAA+AGG | - | chr4_4:71538617-71538636 | None:intergenic | 35.0% | |
| AGCATACTACCGTAATTTCA+AGG | + | chr4_4:71538621-71538640 | Msa0700490:CDS | 35.0% | |
| GTTCAAATTCTGATGCTGAA+TGG | + | chr4_4:71538674-71538693 | Msa0700490:CDS | 35.0% | |
| ATAAATGCGCTTGATGCTTA+TGG | + | chr4_4:71538700-71538719 | Msa0700490:CDS | 35.0% | |
| ATGGTAGAAGAAGATTGAGA+TGG | + | chr4_4:71538719-71538738 | Msa0700490:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | + | chr4_4:71538720-71538739 | Msa0700490:CDS | 35.0% | |
| ACCAAGACTTTGATCTAACA+TGG | + | chr4_4:71536857-71536876 | Msa0700490:CDS | 35.0% | |
| CCAAGACTTTGATCTAACAT+GGG | + | chr4_4:71536858-71536877 | Msa0700490:CDS | 35.0% | |
| CAAGACTTTGATCTAACATG+GGG | + | chr4_4:71536859-71536878 | Msa0700490:CDS | 35.0% | |
| AACCGTGCTAAGATATTCAA+TGG | + | chr4_4:71536886-71536905 | Msa0700490:CDS | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | - | chr4_4:71536891-71536910 | None:intergenic | 35.0% | |
| !! | TCAAAGAGAGAGTACCTATT+TGG | + | chr4_4:71536961-71536980 | Msa0700490:CDS | 35.0% |
| !! | CAAAGAGAGAGTACCTATTT+GGG | + | chr4_4:71536962-71536981 | Msa0700490:CDS | 35.0% |
| GCATATCAATTCTCCCAAAT+AGG | - | chr4_4:71536978-71536997 | None:intergenic | 35.0% | |
| ! | ATTTTACTTTCTCGTGACAG+GGG | + | chr4_4:71537694-71537713 | Msa0700490:intron | 35.0% |
| CACTTTAGATGTTTCGTTCT+AGG | - | chr4_4:71537896-71537915 | None:intergenic | 35.0% | |
| ! | CATCTAAAGTGTGATTGAGA+TGG | + | chr4_4:71537905-71537924 | Msa0700490:intron | 35.0% |
| TGATTGAGATGGTTTGATAG+TGG | + | chr4_4:71537916-71537935 | Msa0700490:intron | 35.0% | |
| ! | AACTCTATTAACGAGGTGTT+GGG | - | chr4_4:71537960-71537979 | None:intergenic | 35.0% |
| AAACTCTATTAACGAGGTGT+TGG | - | chr4_4:71537961-71537980 | None:intergenic | 35.0% | |
| GATGTCAAACTCTATTAACG+AGG | - | chr4_4:71537967-71537986 | None:intergenic | 35.0% | |
| !! | TTAACCAATATGGTGTTGTG+TGG | + | chr4_4:71537997-71538016 | Msa0700490:intron | 35.0% |
| !! | TAACCAATATGGTGTTGTGT+GGG | + | chr4_4:71537998-71538017 | Msa0700490:intron | 35.0% |
| ! | AAGGAAAGGGACTTTTCTTT+GGG | - | chr4_4:71538089-71538108 | None:intergenic | 35.0% |
| ! | AAAGGAAAGGGACTTTTCTT+TGG | - | chr4_4:71538090-71538109 | None:intergenic | 35.0% |
| ! | AGAAAAGTCCCTTTCCTTTT+TGG | + | chr4_4:71538091-71538110 | Msa0700490:intron | 35.0% |
| TGGCAATACCAAAAAGGAAA+GGG | - | chr4_4:71538102-71538121 | None:intergenic | 35.0% | |
| ATGGCAATACCAAAAAGGAA+AGG | - | chr4_4:71538103-71538122 | None:intergenic | 35.0% | |
| AAATCAATCTCATCATGGGT+TGG | - | chr4_4:71538186-71538205 | None:intergenic | 35.0% | |
| GAGAACAACAATTCTACCTT+TGG | + | chr4_4:71538280-71538299 | Msa0700490:CDS | 35.0% | |
| !! | TAAGTGTGGAAGTTTCTAGT+GGG | - | chr4_4:71538312-71538331 | None:intergenic | 35.0% |
| AGTGACTTACATGATGTGTT+GGG | - | chr4_4:71538352-71538371 | None:intergenic | 35.0% | |
| TAGTGACTTACATGATGTGT+TGG | - | chr4_4:71538353-71538372 | None:intergenic | 35.0% | |
| TGGATTTAACTGCAGATTCT+TGG | + | chr4_4:71538438-71538457 | Msa0700490:intron | 35.0% | |
| !! | TGGTTGATAACATGCCAATA+AGG | + | chr4_4:71538458-71538477 | Msa0700490:CDS | 35.0% |
| !! | GGTTGATAACATGCCAATAA+GGG | + | chr4_4:71538459-71538478 | Msa0700490:CDS | 35.0% |
| ! | ATTGGTTGGTTCTTTGGAAA+AGG | - | chr4_4:71538514-71538533 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | - | chr4_4:71538520-71538539 | None:intergenic | 35.0% |
| TGGAATAGATTCTCATTGGT+TGG | - | chr4_4:71538528-71538547 | None:intergenic | 35.0% | |
| TTACGGTAGTATGCTGTAAA+GGG | - | chr4_4:71538616-71538635 | None:intergenic | 35.0% | |
| ATTACGGTAGTATGCTGTAA+AGG | - | chr4_4:71538617-71538636 | None:intergenic | 35.0% | |
| AGCATACTACCGTAATTTCA+AGG | + | chr4_4:71538621-71538640 | Msa0700490:CDS | 35.0% | |
| GTTCAAATTCTGATGCTGAA+TGG | + | chr4_4:71538674-71538693 | Msa0700490:CDS | 35.0% | |
| ATAAATGCGCTTGATGCTTA+TGG | + | chr4_4:71538700-71538719 | Msa0700490:CDS | 35.0% | |
| ATGGTAGAAGAAGATTGAGA+TGG | + | chr4_4:71538719-71538738 | Msa0700490:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | + | chr4_4:71538720-71538739 | Msa0700490:CDS | 35.0% | |
| CACATGAAACTCATTGTGAG+TGG | - | chr4_4:71536779-71536798 | None:intergenic | 40.0% | |
| CCCATGTTAGATCAAAGTCT+TGG | - | chr4_4:71536861-71536880 | None:intergenic | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | + | chr4_4:71536889-71536908 | Msa0700490:CDS | 40.0% | |
| !! | AAGTGTGGAAGTTTCTAGTG+GGG | - | chr4_4:71538311-71538330 | None:intergenic | 40.0% |
| ! | GTAAGTGTGGAAGTTTCTAG+TGG | - | chr4_4:71538313-71538332 | None:intergenic | 40.0% |
| TCCACACTTACTCCATCATT+TGG | + | chr4_4:71538322-71538341 | Msa0700490:CDS | 40.0% | |
| ! | TCCAAATGATGGAGTAAGTG+TGG | - | chr4_4:71538326-71538345 | None:intergenic | 40.0% |
| GTGACTTACATGATGTGTTG+GGG | - | chr4_4:71538351-71538370 | None:intergenic | 40.0% | |
| AGGCTGGAATAGATTCTCAT+TGG | - | chr4_4:71538532-71538551 | None:intergenic | 40.0% | |
| !! | GTGGATTGGTGAAAACTGAT+TGG | + | chr4_4:71538581-71538600 | Msa0700490:CDS | 40.0% |
| ! | ACTGAGTGGCCTTGAAATTA+CGG | - | chr4_4:71538633-71538652 | None:intergenic | 40.0% |
| TAGCCACTAGGCACTTTATA+AGG | + | chr4_4:71538816-71538835 | Msa0700490:exon | 40.0% | |
| ! | GAACCTTATAAAGTGCCTAG+TGG | - | chr4_4:71538822-71538841 | None:intergenic | 40.0% |
| CACATGAAACTCATTGTGAG+TGG | - | chr4_4:71536779-71536798 | None:intergenic | 40.0% | |
| CCCATGTTAGATCAAAGTCT+TGG | - | chr4_4:71536861-71536880 | None:intergenic | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | + | chr4_4:71536889-71536908 | Msa0700490:CDS | 40.0% | |
| !! | AAGTGTGGAAGTTTCTAGTG+GGG | - | chr4_4:71538311-71538330 | None:intergenic | 40.0% |
| ! | GTAAGTGTGGAAGTTTCTAG+TGG | - | chr4_4:71538313-71538332 | None:intergenic | 40.0% |
| TCCACACTTACTCCATCATT+TGG | + | chr4_4:71538322-71538341 | Msa0700490:CDS | 40.0% | |
| ! | TCCAAATGATGGAGTAAGTG+TGG | - | chr4_4:71538326-71538345 | None:intergenic | 40.0% |
| GTGACTTACATGATGTGTTG+GGG | - | chr4_4:71538351-71538370 | None:intergenic | 40.0% | |
| AGGCTGGAATAGATTCTCAT+TGG | - | chr4_4:71538532-71538551 | None:intergenic | 40.0% | |
| !! | GTGGATTGGTGAAAACTGAT+TGG | + | chr4_4:71538581-71538600 | Msa0700490:CDS | 40.0% |
| ! | ACTGAGTGGCCTTGAAATTA+CGG | - | chr4_4:71538633-71538652 | None:intergenic | 40.0% |
| TAGCCACTAGGCACTTTATA+AGG | + | chr4_4:71538816-71538835 | Msa0700490:exon | 40.0% | |
| ! | GAACCTTATAAAGTGCCTAG+TGG | - | chr4_4:71538822-71538841 | None:intergenic | 40.0% |
| TTTATGGTGGCTACTTGTGC+TGG | + | chr4_4:71536826-71536845 | Msa0700490:CDS | 45.0% | |
| CTTTCCCTTGACAAAGTCTC+TGG | + | chr4_4:71536925-71536944 | Msa0700490:CDS | 45.0% | |
| AGAGCCAGAGACTTTGTCAA+GGG | - | chr4_4:71536932-71536951 | None:intergenic | 45.0% | |
| !! | ATGCAGCTTAAGCTTGTTGC+TGG | + | chr4_4:71536994-71537013 | Msa0700490:CDS | 45.0% |
| AGTCCCACACAACACCATAT+TGG | - | chr4_4:71538004-71538023 | None:intergenic | 45.0% | |
| GAGTTCTTGGGAAACACAAG+TGG | + | chr4_4:71538207-71538226 | Msa0700490:CDS | 45.0% | |
| TTCTAGTGGGGTCAAACCAA+AGG | - | chr4_4:71538299-71538318 | None:intergenic | 45.0% | |
| TGAGAATCTATTCCAGCCTG+TGG | + | chr4_4:71538533-71538552 | Msa0700490:CDS | 45.0% | |
| CCTGTGGAATGCTGATGATT+GGG | + | chr4_4:71538549-71538568 | Msa0700490:CDS | 45.0% | |
| TTTCACCAATCCACCTCTTG+TGG | - | chr4_4:71538575-71538594 | None:intergenic | 45.0% | |
| !! | GTATGCTGTAAAGGGTGCTT+TGG | - | chr4_4:71538608-71538627 | None:intergenic | 45.0% |
| ! | AGACTTGGTTGAGAACTGAG+TGG | - | chr4_4:71538647-71538666 | None:intergenic | 45.0% |
| GATCTTAAGCGATTCCCACA+AGG | + | chr4_4:71538778-71538797 | Msa0700490:CDS | 45.0% | |
| ACTCAACAGGAACACCTTGT+GGG | - | chr4_4:71538795-71538814 | None:intergenic | 45.0% | |
| TTTATGGTGGCTACTTGTGC+TGG | + | chr4_4:71536826-71536845 | Msa0700490:CDS | 45.0% | |
| CTTTCCCTTGACAAAGTCTC+TGG | + | chr4_4:71536925-71536944 | Msa0700490:CDS | 45.0% | |
| AGAGCCAGAGACTTTGTCAA+GGG | - | chr4_4:71536932-71536951 | None:intergenic | 45.0% | |
| !! | ATGCAGCTTAAGCTTGTTGC+TGG | + | chr4_4:71536994-71537013 | Msa0700490:CDS | 45.0% |
| AGTCCCACACAACACCATAT+TGG | - | chr4_4:71538004-71538023 | None:intergenic | 45.0% | |
| GAGTTCTTGGGAAACACAAG+TGG | + | chr4_4:71538207-71538226 | Msa0700490:CDS | 45.0% | |
| TTCTAGTGGGGTCAAACCAA+AGG | - | chr4_4:71538299-71538318 | None:intergenic | 45.0% | |
| TGAGAATCTATTCCAGCCTG+TGG | + | chr4_4:71538533-71538552 | Msa0700490:CDS | 45.0% | |
| CCTGTGGAATGCTGATGATT+GGG | + | chr4_4:71538549-71538568 | Msa0700490:CDS | 45.0% | |
| TTTCACCAATCCACCTCTTG+TGG | - | chr4_4:71538575-71538594 | None:intergenic | 45.0% | |
| !! | GTATGCTGTAAAGGGTGCTT+TGG | - | chr4_4:71538608-71538627 | None:intergenic | 45.0% |
| ! | AGACTTGGTTGAGAACTGAG+TGG | - | chr4_4:71538647-71538666 | None:intergenic | 45.0% |
| GATCTTAAGCGATTCCCACA+AGG | + | chr4_4:71538778-71538797 | Msa0700490:CDS | 45.0% | |
| ACTCAACAGGAACACCTTGT+GGG | - | chr4_4:71538795-71538814 | None:intergenic | 45.0% | |
| CAGAGCCAGAGACTTTGTCA+AGG | - | chr4_4:71536933-71536952 | None:intergenic | 50.0% | |
| ! | CTTGACAAAGTCTCTGGCTC+TGG | + | chr4_4:71536931-71536950 | Msa0700490:CDS | 50.0% |
| TGGTACAGCTGTCATCCCAA+GGG | + | chr4_4:71538160-71538179 | Msa0700490:intron | 50.0% | |
| GTGTTGGGGCTTCCAAATGA+TGG | - | chr4_4:71538337-71538356 | None:intergenic | 50.0% | |
| ATCATCAGCATTCCACAGGC+TGG | - | chr4_4:71538548-71538567 | None:intergenic | 50.0% | |
| GCCTGTGGAATGCTGATGAT+TGG | + | chr4_4:71538548-71538567 | Msa0700490:CDS | 50.0% | |
| CCCAATCATCAGCATTCCAC+AGG | - | chr4_4:71538552-71538571 | None:intergenic | 50.0% | |
| CACTCAACAGGAACACCTTG+TGG | - | chr4_4:71538796-71538815 | None:intergenic | 50.0% | |
| TCCTGTTGAGTGTAGCCACT+AGG | + | chr4_4:71538804-71538823 | Msa0700490:CDS | 50.0% | |
| CAGAGCCAGAGACTTTGTCA+AGG | - | chr4_4:71536933-71536952 | None:intergenic | 50.0% | |
| ! | CTTGACAAAGTCTCTGGCTC+TGG | + | chr4_4:71536931-71536950 | Msa0700490:CDS | 50.0% |
| TGGTACAGCTGTCATCCCAA+GGG | + | chr4_4:71538160-71538179 | Msa0700490:intron | 50.0% | |
| GTGTTGGGGCTTCCAAATGA+TGG | - | chr4_4:71538337-71538356 | None:intergenic | 50.0% | |
| ATCATCAGCATTCCACAGGC+TGG | - | chr4_4:71538548-71538567 | None:intergenic | 50.0% | |
| GCCTGTGGAATGCTGATGAT+TGG | + | chr4_4:71538548-71538567 | Msa0700490:CDS | 50.0% | |
| CCCAATCATCAGCATTCCAC+AGG | - | chr4_4:71538552-71538571 | None:intergenic | 50.0% | |
| CACTCAACAGGAACACCTTG+TGG | - | chr4_4:71538796-71538815 | None:intergenic | 50.0% | |
| TCCTGTTGAGTGTAGCCACT+AGG | + | chr4_4:71538804-71538823 | Msa0700490:CDS | 50.0% | |
| CTTGTTGCTGGCAACTCAGC+TGG | + | chr4_4:71537006-71537025 | Msa0700490:CDS | 55.0% | |
| ! | GGTGTTGTGTGGGACTCTCT+TGG | + | chr4_4:71538008-71538027 | Msa0700490:intron | 55.0% |
| GTGGTACAGCTGTCATCCCA+AGG | + | chr4_4:71538159-71538178 | Msa0700490:intron | 55.0% | |
| !! | CTCATCATGGGTTGGCCCTT+GGG | - | chr4_4:71538178-71538197 | None:intergenic | 55.0% |
| !! | TCTCATCATGGGTTGGCCCT+TGG | - | chr4_4:71538179-71538198 | None:intergenic | 55.0% |
| GCTGATGATTGGGCCACAAG+AGG | + | chr4_4:71538559-71538578 | Msa0700490:CDS | 55.0% | |
| GATGATTGGGCCACAAGAGG+TGG | + | chr4_4:71538562-71538581 | Msa0700490:CDS | 55.0% | |
| TTGGGCCACAAGAGGTGGAT+TGG | + | chr4_4:71538567-71538586 | Msa0700490:CDS | 55.0% | |
| GCCTAGTGGCTACACTCAAC+AGG | - | chr4_4:71538808-71538827 | None:intergenic | 55.0% | |
| CTTGTTGCTGGCAACTCAGC+TGG | + | chr4_4:71537006-71537025 | Msa0700490:CDS | 55.0% | |
| ! | GGTGTTGTGTGGGACTCTCT+TGG | + | chr4_4:71538008-71538027 | Msa0700490:intron | 55.0% |
| GTGGTACAGCTGTCATCCCA+AGG | + | chr4_4:71538159-71538178 | Msa0700490:intron | 55.0% | |
| !! | CTCATCATGGGTTGGCCCTT+GGG | - | chr4_4:71538178-71538197 | None:intergenic | 55.0% |
| !! | TCTCATCATGGGTTGGCCCT+TGG | - | chr4_4:71538179-71538198 | None:intergenic | 55.0% |
| GCTGATGATTGGGCCACAAG+AGG | + | chr4_4:71538559-71538578 | Msa0700490:CDS | 55.0% | |
| GATGATTGGGCCACAAGAGG+TGG | + | chr4_4:71538562-71538581 | Msa0700490:CDS | 55.0% | |
| TTGGGCCACAAGAGGTGGAT+TGG | + | chr4_4:71538567-71538586 | Msa0700490:CDS | 55.0% | |
| GCCTAGTGGCTACACTCAAC+AGG | - | chr4_4:71538808-71538827 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 71536763 | 71539028 | 71536763 | ID=Msa0700490;Name=Msa0700490 |
| chr4_4 | mRNA | 71536763 | 71539028 | 71536763 | ID=Msa0700490-mRNA-1;Parent=Msa0700490;Name=Msa0700490-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.5|0.66|1|1|1|3|203|300 |
| chr4_4 | exon | 71536763 | 71537098 | 71536763 | ID=Msa0700490-mRNA-1:exon:21781;Parent=Msa0700490-mRNA-1 |
| chr4_4 | exon | 71538168 | 71538361 | 71538168 | ID=Msa0700490-mRNA-1:exon:21782;Parent=Msa0700490-mRNA-1 |
| chr4_4 | exon | 71538453 | 71539028 | 71538453 | ID=Msa0700490-mRNA-1:exon:21783;Parent=Msa0700490-mRNA-1 |
| chr4_4 | CDS | 71536763 | 71537098 | 71536763 | ID=Msa0700490-mRNA-1:cds;Parent=Msa0700490-mRNA-1 |
| chr4_4 | CDS | 71538168 | 71538361 | 71538168 | ID=Msa0700490-mRNA-1:cds;Parent=Msa0700490-mRNA-1 |
| chr4_4 | CDS | 71538453 | 71538825 | 71538453 | ID=Msa0700490-mRNA-1:cds;Parent=Msa0700490-mRNA-1 |
| chr4_4 | three_prime_UTR | 71538826 | 71539028 | 71538826 | ID=Msa0700490-mRNA-1:three_prime_utr;Parent=Msa0700490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
