Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713230 | XP_003611408.1 | 97.790 | 543 | 12 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713230 | sp|O23553|BAM3_ARATH | 68.051 | 554 | 160 | 8 | 1 | 543 | 1 | 548 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713230 | G7JYN2 | 97.790 | 543 | 12 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1118 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0614980 | Msa0713230 | 0.842137 | 3.107146e-58 | -8.615850e-47 |
| Msa0621780 | Msa0713230 | 0.824476 | 7.907640e-54 | -8.615850e-47 |
| Msa0622910 | Msa0713230 | -0.824923 | 6.203953e-54 | -8.615850e-47 |
| Msa0629440 | Msa0713230 | -0.849121 | 3.963106e-60 | -8.615850e-47 |
| Msa0644770 | Msa0713230 | -0.809164 | 2.166403e-50 | -8.615850e-47 |
| Msa0650640 | Msa0713230 | 0.847826 | 9.041771e-60 | -8.615850e-47 |
| Msa0650740 | Msa0713230 | 0.800210 | 1.603580e-48 | -8.615850e-47 |
| Msa0667070 | Msa0713230 | -0.829668 | 4.525929e-55 | -8.615850e-47 |
| Msa0700490 | Msa0713230 | -0.800966 | 1.124691e-48 | -8.615850e-47 |
| Msa0713210 | Msa0713230 | 0.913317 | 7.077032e-84 | -8.615850e-47 |
| Msa0713220 | Msa0713230 | 0.931928 | 1.824133e-94 | -8.615850e-47 |
| Msa0713230 | Msa0754350 | 0.842746 | 2.141462e-58 | -8.615850e-47 |
| Msa0713230 | Msa0755080 | 0.911195 | 8.004531e-83 | -8.615850e-47 |
| Msa0713230 | Msa0755090 | 0.863511 | 2.362672e-64 | -8.615850e-47 |
| Msa0713230 | Msa0795710 | 0.825466 | 4.617112e-54 | -8.615850e-47 |
| Msa0713230 | Msa0796950 | 0.916709 | 1.285595e-85 | -8.615850e-47 |
| Msa0713230 | Msa0797000 | 0.895612 | 8.125011e-76 | -8.615850e-47 |
| Msa0713230 | Msa0833450 | 0.805187 | 1.506627e-49 | -8.615850e-47 |
| Msa0713230 | Msa0834450 | 0.916877 | 1.048769e-85 | -8.615850e-47 |
| Msa0713230 | Msa0834460 | 0.866577 | 2.576419e-65 | -8.615850e-47 |
| Msa0713230 | Msa0964580 | 0.816507 | 5.336935e-52 | -8.615850e-47 |
| Msa0713230 | Msa1075590 | 0.809823 | 1.563739e-50 | -8.615850e-47 |
| Msa0713230 | Msa1137090 | 0.814293 | 1.658740e-51 | -8.615850e-47 |
| Msa0713230 | Msa1164530 | 0.801652 | 8.140102e-49 | -8.615850e-47 |
| Msa0713230 | Msa1172360 | 0.806521 | 7.902724e-50 | -8.615850e-47 |
| Msa0713230 | Msa1174870 | 0.806563 | 7.741152e-50 | -8.615850e-47 |
| Msa0713230 | Msa1204600 | -0.804988 | 1.658203e-49 | -8.615850e-47 |
| Msa0713230 | Msa1234730 | 0.801183 | 1.015508e-48 | -8.615850e-47 |
| Msa0713230 | Msa1353670 | 0.824668 | 7.126514e-54 | -8.615850e-47 |
| Msa0713230 | Msa1356180 | 0.858841 | 6.243749e-63 | -8.615850e-47 |
| Msa0713230 | Msa1403950 | 0.806578 | 7.683570e-50 | -8.615850e-47 |
| Msa0713230 | Msa1412620 | -0.826035 | 3.382804e-54 | -8.615850e-47 |
| Msa0197180 | Msa0713230 | 0.863424 | 2.514303e-64 | -8.615850e-47 |
| Msa0376340 | Msa0713230 | 0.863943 | 1.734368e-64 | -8.615850e-47 |
| Msa0424780 | Msa0713230 | 0.856269 | 3.605368e-62 | -8.615850e-47 |
| Msa0453280 | Msa0713230 | 0.860199 | 2.438903e-63 | -8.615850e-47 |
| Msa0238940 | Msa0713230 | 0.866836 | 2.130879e-65 | -8.615850e-47 |
| Msa0308770 | Msa0713230 | 0.836281 | 1.026176e-56 | -8.615850e-47 |
| Msa0316750 | Msa0713230 | 0.860641 | 1.792551e-63 | -8.615850e-47 |
| Msa0362060 | Msa0713230 | 0.815363 | 9.607183e-52 | -8.615850e-47 |
| Msa0501510 | Msa0713230 | 0.841106 | 5.810788e-58 | -8.615850e-47 |
| Msa0516160 | Msa0713230 | 0.862466 | 4.966769e-64 | -8.615850e-47 |
| Msa0530380 | Msa0713230 | 0.822364 | 2.464551e-53 | -8.615850e-47 |
| Msa0563970 | Msa0713230 | -0.803542 | 3.317746e-49 | -8.615850e-47 |
| Msa0577320 | Msa0713230 | -0.823491 | 1.346037e-53 | -8.615850e-47 |
| Msa0579340 | Msa0713230 | 0.809733 | 1.634959e-50 | -8.615850e-47 |
| Msa0579350 | Msa0713230 | 0.854804 | 9.641790e-62 | -8.615850e-47 |
| Msa0579360 | Msa0713230 | 0.842197 | 2.996247e-58 | -8.615850e-47 |
| Msa0580540 | Msa0713230 | 0.822499 | 2.292532e-53 | -8.615850e-47 |
| Msa0598560 | Msa0713230 | 0.801332 | 9.464625e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713230 | MtrunA17_Chr5g0399991 | 97.790 | 543 | 12 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1118 |
| Msa0713230 | MtrunA17_Chr5g0400001 | 91.743 | 545 | 41 | 2 | 1 | 543 | 1 | 543 | 0.0 | 1040 |
| Msa0713230 | MtrunA17_Chr4g0055281 | 73.432 | 542 | 126 | 5 | 1 | 535 | 1 | 531 | 0.0 | 829 |
| Msa0713230 | MtrunA17_Chr6g0481031 | 63.825 | 434 | 145 | 2 | 89 | 510 | 106 | 539 | 0.0 | 614 |
| Msa0713230 | MtrunA17_Chr4g0023601 | 49.436 | 443 | 207 | 4 | 79 | 507 | 3 | 442 | 1.69e-156 | 456 |
| Msa0713230 | MtrunA17_Chr2g0323051 | 50.000 | 436 | 201 | 4 | 86 | 507 | 83 | 515 | 1.17e-149 | 442 |
| Msa0713230 | MtrunA17_Chr8g0388651 | 45.625 | 480 | 236 | 8 | 81 | 543 | 67 | 538 | 1.21e-140 | 417 |
| Msa0713230 | MtrunA17_Chr7g0247631 | 46.292 | 445 | 222 | 6 | 84 | 515 | 260 | 700 | 1.40e-123 | 378 |
| Msa0713230 | MtrunA17_Chr2g0286431 | 39.636 | 439 | 253 | 5 | 75 | 508 | 71 | 502 | 6.58e-106 | 327 |
| Msa0713230 | MtrunA17_Chr5g0408851 | 38.229 | 463 | 268 | 8 | 59 | 510 | 189 | 644 | 5.01e-104 | 326 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713230 | AT4G17090.1 | 68.051 | 554 | 160 | 8 | 1 | 543 | 1 | 548 | 0.0 | 782 |
| Msa0713230 | AT3G23920.1 | 59.267 | 491 | 181 | 4 | 34 | 510 | 56 | 541 | 0.0 | 613 |
| Msa0713230 | AT4G15210.1 | 47.534 | 446 | 216 | 5 | 77 | 507 | 2 | 444 | 4.47e-149 | 437 |
| Msa0713230 | AT4G15210.2 | 50.750 | 400 | 192 | 4 | 77 | 474 | 2 | 398 | 6.73e-147 | 429 |
| Msa0713230 | AT2G32290.1 | 45.188 | 478 | 244 | 6 | 43 | 507 | 34 | 506 | 1.02e-141 | 421 |
| Msa0713230 | AT4G00490.1 | 48.843 | 432 | 204 | 6 | 89 | 507 | 95 | 522 | 1.09e-138 | 412 |
| Msa0713230 | AT4G15210.3 | 47.608 | 418 | 195 | 5 | 128 | 531 | 1 | 408 | 1.45e-138 | 409 |
| Msa0713230 | AT4G15210.4 | 47.608 | 418 | 195 | 5 | 128 | 531 | 1 | 408 | 1.45e-138 | 409 |
| Msa0713230 | AT5G55700.1 | 43.964 | 439 | 227 | 5 | 88 | 508 | 91 | 528 | 2.56e-130 | 390 |
| Msa0713230 | AT2G45880.1 | 46.387 | 429 | 213 | 6 | 89 | 504 | 248 | 672 | 4.92e-122 | 374 |
| Msa0713230 | AT5G45300.3 | 40.045 | 442 | 247 | 8 | 81 | 510 | 261 | 696 | 4.30e-100 | 318 |
| Msa0713230 | AT5G45300.2 | 40.045 | 442 | 247 | 8 | 81 | 510 | 245 | 680 | 4.57e-100 | 317 |
| Msa0713230 | AT5G45300.1 | 40.045 | 442 | 247 | 8 | 81 | 510 | 247 | 682 | 5.99e-100 | 317 |
| Msa0713230 | AT5G55700.2 | 44.954 | 327 | 167 | 3 | 195 | 508 | 39 | 365 | 5.67e-98 | 301 |
| Msa0713230 | AT5G18670.1 | 37.939 | 427 | 247 | 4 | 89 | 508 | 87 | 502 | 2.27e-89 | 285 |
Find 137 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAGATTTACAGATTATT+TGG | 0.109679 | 5_1:+5357997 | Msa0713230:CDS |
| CCAATGAATTCCAGCTATTT+TGG | 0.174268 | 5_1:-5359334 | None:intergenic |
| AATGCACCCCTTAGATAATT+TGG | 0.176654 | 5_1:+5359949 | Msa0713230:three_prime_UTR |
| TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5_1:-5358489 | None:intergenic |
| TATATAAGATTTCATCATTC+AGG | 0.250144 | 5_1:-5360002 | None:intergenic |
| ATGGTCCAATGAAGTATAAT+TGG | 0.253077 | 5_1:+5357542 | Msa0713230:CDS |
| ACTTGTTTGGAATATGCTTT+TGG | 0.267147 | 5_1:-5359295 | None:intergenic |
| TTGGTTTACACAGACAAATT+AGG | 0.267790 | 5_1:+5357872 | Msa0713230:CDS |
| TAAAAGCATGTTGAATCATT+AGG | 0.284791 | 5_1:+5359896 | Msa0713230:three_prime_UTR |
| TATATTAAATTTCACATGTA+TGG | 0.290695 | 5_1:+5359464 | Msa0713230:CDS |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5_1:+5358504 | Msa0713230:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5_1:+5357510 | Msa0713230:CDS |
| GGTTGCTTGAGGGTGATAAT+TGG | 0.305293 | 5_1:+5359685 | Msa0713230:CDS |
| GGAACATGGAACACAGAATA+TGG | 0.310195 | 5_1:+5359207 | Msa0713230:CDS |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5_1:+5359168 | Msa0713230:CDS |
| TTATGTTGGACACATAATTA+AGG | 0.321924 | 5_1:+5359791 | Msa0713230:CDS |
| CATTGGAATTCTCCAATTCC+TGG | 0.333977 | 5_1:-5358516 | None:intergenic |
| ATAGTTTCACTCCACTTGTT+TGG | 0.337144 | 5_1:-5359308 | None:intergenic |
| GATGGAACTTGGAAGTTTCC+AGG | 0.338985 | 5_1:+5358498 | Msa0713230:CDS |
| GCTTCCCAATTATACTTCAT+TGG | 0.343253 | 5_1:-5357547 | None:intergenic |
| GAAGCATCAGCAGGGGCAAT+TGG | 0.347112 | 5_1:+5359099 | Msa0713230:CDS |
| ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | 5_1:+5359226 | Msa0713230:CDS |
| AGACACCACCAAATTATCTA+AGG | 0.351703 | 5_1:-5359957 | None:intergenic |
| CTGTAAAGAAAGACAAGAAA+TGG | 0.352936 | 5_1:+5357314 | Msa0713230:CDS |
| TGGTTTACACAGACAAATTA+GGG | 0.354994 | 5_1:+5357873 | Msa0713230:CDS |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.361586 | 5_1:-5359432 | None:intergenic |
| ACAAGTGGACCTCATGATTC+TGG | 0.369913 | 5_1:+5359138 | Msa0713230:CDS |
| GATAGATTTACAGATTATTT+GGG | 0.377086 | 5_1:+5357998 | Msa0713230:CDS |
| CCCATTGTTACCGTGTCTAA+TGG | 0.379739 | 5_1:-5357412 | None:intergenic |
| TCCTCTACCTCCATGGGTGC+TGG | 0.385744 | 5_1:+5357826 | Msa0713230:CDS |
| CATCCCAGTGAGATATATTC+AGG | 0.390835 | 5_1:-5357905 | None:intergenic |
| AGATATGATTCAAGTGCTTA+TGG | 0.392336 | 5_1:+5359606 | Msa0713230:CDS |
| CTGATTTCTTCCAGCACCCA+TGG | 0.403500 | 5_1:-5357836 | None:intergenic |
| CATATCTAAGAATAAATAAG+AGG | 0.406737 | 5_1:+5359664 | Msa0713230:CDS |
| CCAAAATAGCTGGAATTCAT+TGG | 0.410744 | 5_1:+5359334 | Msa0713230:CDS |
| CTTGCTGAAGCTGATTCATA+TGG | 0.414041 | 5_1:+5359759 | Msa0713230:CDS |
| AAGTGGGACTAGGTCCTTGT+GGG | 0.419249 | 5_1:+5358445 | Msa0713230:CDS |
| CTGAAGAGTGCTGGAGTTGA+AGG | 0.424511 | 5_1:+5357481 | Msa0713230:CDS |
| CAGGAAGTTCAAGTGGGACT+AGG | 0.426275 | 5_1:+5358435 | Msa0713230:intron |
| AGCAGGAAGAACTCCACTTC+AGG | 0.426300 | 5_1:+5357946 | Msa0713230:CDS |
| AGCAATGAATGCTAGTTTGA+TGG | 0.437255 | 5_1:+5357456 | Msa0713230:CDS |
| ACTTGATTCACCAATCCTTC+TGG | 0.439551 | 5_1:-5359528 | None:intergenic |
| GGAGAATGATGTTATAATTG+AGG | 0.440317 | 5_1:+5359812 | Msa0713230:CDS |
| TGTTTCTTTCTGATTAATCA+AGG | 0.443999 | 5_1:-5357155 | None:intergenic |
| GGAGTTCTTCCTGCTAGAAC+AGG | 0.447514 | 5_1:-5357938 | None:intergenic |
| CATGGGTGCTGGAAGAAATC+AGG | 0.450808 | 5_1:+5357837 | Msa0713230:CDS |
| TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5_1:-5358488 | None:intergenic |
| TTTCACATGTATGGAAATGA+AGG | 0.453248 | 5_1:+5359473 | Msa0713230:CDS |
| AAACTATCTGCCAAAATAGC+TGG | 0.456022 | 5_1:+5359324 | Msa0713230:CDS |
| TATGGGACTGATCTTTATGT+TGG | 0.456464 | 5_1:+5359777 | Msa0713230:CDS |
| AAGCATCAGCAGGGGCAATT+GGG | 0.462242 | 5_1:+5359100 | Msa0713230:CDS |
| ATAGCATTCCTCTACCTCCA+TGG | 0.463802 | 5_1:+5357819 | Msa0713230:intron |
| CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5_1:-5358480 | None:intergenic |
| TGATAATTGGAGGAAATTTG+TGG | 0.467073 | 5_1:+5359698 | Msa0713230:CDS |
| TTCAGTTTGTGACCAAAAGA+TGG | 0.467366 | 5_1:-5357238 | None:intergenic |
| TTTGTACCTTGTCATAGCAT+TGG | 0.470424 | 5_1:-5358533 | None:intergenic |
| TGGTCCAATGAAGTATAATT+GGG | 0.473267 | 5_1:+5357543 | Msa0713230:CDS |
| GCGGAAGCTTCTCATGTAAT+CGG | 0.475464 | 5_1:-5357975 | None:intergenic |
| TTGTCTGTGTAAACCAACTC+AGG | 0.475976 | 5_1:-5357866 | None:intergenic |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5_1:+5357504 | Msa0713230:CDS |
| TCATCCTTGGAAGCATCAGC+AGG | 0.479509 | 5_1:+5359090 | Msa0713230:CDS |
| ATGGCAGGTGGTGAACTTGC+TGG | 0.480529 | 5_1:+5359567 | Msa0713230:CDS |
| AAATCCTGAATATATCTCAC+TGG | 0.483131 | 5_1:+5357901 | Msa0713230:CDS |
| ACAGTATATGAGATCATCCT+TGG | 0.486046 | 5_1:+5359077 | Msa0713230:intron |
| ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5_1:+5358487 | Msa0713230:CDS |
| TCCAGCACCCATGGAGGTAG+AGG | 0.495023 | 5_1:-5357827 | None:intergenic |
| TAGCATTCCTCTACCTCCAT+GGG | 0.501230 | 5_1:+5357820 | Msa0713230:intron |
| AAATTATCTAAGGGGTGCAT+TGG | 0.502313 | 5_1:-5359947 | None:intergenic |
| TGCTTGAGGGTGATAATTGG+AGG | 0.503043 | 5_1:+5359688 | Msa0713230:CDS |
| TGCCCCTGCTGATGCTTCCA+AGG | 0.505543 | 5_1:-5359094 | None:intergenic |
| CCATTAGACACGGTAACAAT+GGG | 0.505572 | 5_1:+5357412 | Msa0713230:CDS |
| ATAAATAAGAGGTTGCTTGA+GGG | 0.505894 | 5_1:+5359675 | Msa0713230:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5_1:+5357503 | Msa0713230:CDS |
| TAATTGTTCACCAGAAGGAT+TGG | 0.508926 | 5_1:+5359518 | Msa0713230:CDS |
| GAAATGTTGGTGACTCCTGC+AGG | 0.512870 | 5_1:+5357647 | Msa0713230:CDS |
| TGTAAAGAAAGACAAGAAAT+GGG | 0.514719 | 5_1:+5357315 | Msa0713230:CDS |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5_1:+5357634 | Msa0713230:CDS |
| AATAAATAAGAGGTTGCTTG+AGG | 0.517623 | 5_1:+5359674 | Msa0713230:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5_1:+5357570 | Msa0713230:CDS |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.525311 | 5_1:+5359723 | Msa0713230:CDS |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5_1:+5357505 | Msa0713230:CDS |
| GATTCAGTGCCTGTTCTAGC+AGG | 0.529878 | 5_1:+5357929 | Msa0713230:CDS |
| CACACATATATCATGTTGAC+GGG | 0.536006 | 5_1:+5359857 | Msa0713230:three_prime_UTR |
| CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5_1:+5358480 | Msa0713230:CDS |
| GCCATTAGACACGGTAACAA+TGG | 0.539108 | 5_1:+5357411 | Msa0713230:CDS |
| TGTCTGATGGTGGTAAACTA+AGG | 0.542826 | 5_1:+5359736 | Msa0713230:CDS |
| AGTGAGGATGGCAACAAAGA+TGG | 0.542830 | 5_1:+5359548 | Msa0713230:CDS |
| TAATCGGAGTAGACCTGAAG+TGG | 0.543820 | 5_1:-5357959 | None:intergenic |
| TGCTGGAGTTGAAGGAGTAA+TGG | 0.546595 | 5_1:+5357489 | Msa0713230:CDS |
| AATCAGGAAGAACCCTGAGT+TGG | 0.548086 | 5_1:+5357853 | Msa0713230:CDS |
| GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | 5_1:-5359239 | None:intergenic |
| GGGCAATTGGGAAGAAAGAG+TGG | 0.553037 | 5_1:+5359112 | Msa0713230:CDS |
| CATGATATATGTGTGTTCAA+TGG | 0.553485 | 5_1:-5359849 | None:intergenic |
| TTGATGGCACTGAAGAGTGC+TGG | 0.558159 | 5_1:+5357472 | Msa0713230:CDS |
| AAAAGCATATTCCAAACAAG+TGG | 0.558992 | 5_1:+5359297 | Msa0713230:CDS |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5_1:+5359402 | Msa0713230:CDS |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5_1:+5357500 | Msa0713230:CDS |
| GATGCTAATTGTTCACCAGA+AGG | 0.566913 | 5_1:+5359513 | Msa0713230:CDS |
| GTTGTGAGTATGTCTGATGG+TGG | 0.571037 | 5_1:+5359726 | Msa0713230:CDS |
| TTGCTGAAGCTGATTCATAT+GGG | 0.575219 | 5_1:+5359760 | Msa0713230:CDS |
| AGGATGGCAACAAAGATGGC+AGG | 0.578781 | 5_1:+5359552 | Msa0713230:CDS |
| TCATTTGCAGGAAGTTCAAG+TGG | 0.580508 | 5_1:+5358428 | Msa0713230:intron |
| GACACCACCAAATTATCTAA+GGG | 0.581499 | 5_1:-5359956 | None:intergenic |
| GCACAAATGCTAGCAAAACA+TGG | 0.581514 | 5_1:+5359438 | Msa0713230:CDS |
| GCACCCCTTAGATAATTTGG+TGG | 0.589080 | 5_1:+5359952 | Msa0713230:three_prime_UTR |
| AAGAAAGAGTGGGGAACAAG+TGG | 0.590788 | 5_1:+5359123 | Msa0713230:CDS |
| ATTGGTGAATCAAGTGAGGA+TGG | 0.590817 | 5_1:+5359536 | Msa0713230:CDS |
| CATGCAACTGAACTAACTGC+AGG | 0.595551 | 5_1:+5359375 | Msa0713230:CDS |
| TGCTGATTCGAATAGAGTAC+CGG | 0.599220 | 5_1:+5357375 | Msa0713230:CDS |
| AATCCTGAATATATCTCACT+GGG | 0.599678 | 5_1:+5357902 | Msa0713230:CDS |
| GGCAATTGGGAAGAAAGAGT+GGG | 0.609694 | 5_1:+5359113 | Msa0713230:CDS |
| ACACACATATATCATGTTGA+CGG | 0.609907 | 5_1:+5359856 | Msa0713230:three_prime_UTR |
| ACTTGCTGGTGAGAATGCAT+TGG | 0.612219 | 5_1:+5359581 | Msa0713230:CDS |
| CATTTGCAGGAAGTTCAAGT+GGG | 0.616706 | 5_1:+5358429 | Msa0713230:intron |
| CATCCTTGGAAGCATCAGCA+GGG | 0.618285 | 5_1:+5359091 | Msa0713230:CDS |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5_1:+5359252 | Msa0713230:CDS |
| TGTCTGTGTAAACCAACTCA+GGG | 0.620140 | 5_1:-5357865 | None:intergenic |
| CTGCAGGTTACTATAACACA+AGG | 0.621880 | 5_1:+5359391 | Msa0713230:CDS |
| CAAGTGGGACTAGGTCCTTG+TGG | 0.627114 | 5_1:+5358444 | Msa0713230:CDS |
| GGATATCTCAGCTCCCCACA+AGG | 0.629732 | 5_1:-5358459 | None:intergenic |
| AATAATCTGTAAATCTATCG+CGG | 0.635987 | 5_1:-5357994 | None:intergenic |
| AGTGGGACTAGGTCCTTGTG+GGG | 0.637417 | 5_1:+5358446 | Msa0713230:CDS |
| GGTGAACAATTAGCATCACA+AGG | 0.655544 | 5_1:-5359507 | None:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | 5_1:-5357394 | None:intergenic |
| ATCCTTGGAAGCATCAGCAG+GGG | 0.664828 | 5_1:+5359092 | Msa0713230:CDS |
| TTAGACACGGTAACAATGGG+AGG | 0.667348 | 5_1:+5357415 | Msa0713230:CDS |
| TTGTATTGACCAGAATCATG+AGG | 0.670196 | 5_1:-5359147 | None:intergenic |
| ATGGCAACAAAGATGGCAGG+TGG | 0.674756 | 5_1:+5359555 | Msa0713230:CDS |
| AAGGATTGGTGAATCAAGTG+AGG | 0.679297 | 5_1:+5359532 | Msa0713230:CDS |
| CTCTATTCGAATCAGCATCG+TGG | 0.679739 | 5_1:-5357369 | None:intergenic |
| ACACCACCAAATTATCTAAG+GGG | 0.679810 | 5_1:-5359955 | None:intergenic |
| TCAATACAATCAATTTCCTG+AGG | 0.689657 | 5_1:+5359161 | Msa0713230:CDS |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | 5_1:+5358527 | Msa0713230:CDS |
| TTTACACAGACAAATTAGGG+AGG | 0.692025 | 5_1:+5357876 | Msa0713230:CDS |
| TGTGATGTTGCCATTAGACA+CGG | 0.702107 | 5_1:+5357402 | Msa0713230:CDS |
| ATTTCTTCCAGCACCCATGG+AGG | 0.717534 | 5_1:-5357833 | None:intergenic |
| GCAATTGGGAAGAAAGAGTG+GGG | 0.730495 | 5_1:+5359114 | Msa0713230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTCTATTTTTATTCAATT+AGG | - | chr5_1:5358216-5358235 | None:intergenic | 10.0% |
| !!! | GTTTTATTTTTATATTTGTT+TGG | + | chr5_1:5359918-5359937 | Msa0713230:three_prime_UTR | 10.0% |
| !! | AGATATTATTACACTAAAAA+TGG | + | chr5_1:5357108-5357127 | Msa0713230:exon | 15.0% |
| !!! | TAGTCTTAGATTTTTATTTT+TGG | - | chr5_1:5357778-5357797 | None:intergenic | 15.0% |
| !!! | ATAAAAATCTAAGACTAATT+TGG | + | chr5_1:5357781-5357800 | Msa0713230:intron | 15.0% |
| !!! | AATTCAATTTTTCCATATTA+AGG | + | chr5_1:5358260-5358279 | Msa0713230:intron | 15.0% |
| !!! | ATCTAACACTAATATTATTT+TGG | - | chr5_1:5358583-5358602 | None:intergenic | 15.0% |
| !!! | TTAAGATATTTTGCAATTAA+AGG | - | chr5_1:5358807-5358826 | None:intergenic | 15.0% |
| !! | TAATAATTTCAAATATGACA+AGG | + | chr5_1:5358941-5358960 | Msa0713230:intron | 15.0% |
| !! | TATATTAAATTTCACATGTA+TGG | + | chr5_1:5359464-5359483 | Msa0713230:CDS | 15.0% |
| !! | GATAGATTTACAGATTATTT+GGG | + | chr5_1:5357998-5358017 | Msa0713230:CDS | 20.0% |
| !! | ACATTTGTTCAAAACTTTAA+CGG | + | chr5_1:5358122-5358141 | Msa0713230:intron | 20.0% |
| !!! | TAGATATATTTTGTTACAAC+CGG | + | chr5_1:5358598-5358617 | Msa0713230:intron | 20.0% |
| !!! | GAGTTCAAAGAATATTTTTT+TGG | + | chr5_1:5358835-5358854 | Msa0713230:intron | 20.0% |
| !! | CATATCTAAGAATAAATAAG+AGG | + | chr5_1:5359664-5359683 | Msa0713230:CDS | 20.0% |
| !! | TATATAAGATTTCATCATTC+AGG | - | chr5_1:5360005-5360024 | None:intergenic | 20.0% |
| ! | TGTTTCTTTCTGATTAATCA+AGG | - | chr5_1:5357158-5357177 | None:intergenic | 25.0% |
| !!! | CCAAAAGATGGTTTAATTTT+TGG | - | chr5_1:5357229-5357248 | None:intergenic | 25.0% |
| !! | CCAAAAATTAAACCATCTTT+TGG | + | chr5_1:5357226-5357245 | Msa0713230:CDS | 25.0% |
| ! | TGTAAAGAAAGACAAGAAAT+GGG | + | chr5_1:5357315-5357334 | Msa0713230:CDS | 25.0% |
| ! | AAATATTCATCCACCAATTT+AGG | + | chr5_1:5357696-5357715 | Msa0713230:intron | 25.0% |
| ! | AATAATCTGTAAATCTATCG+CGG | - | chr5_1:5357997-5358016 | None:intergenic | 25.0% |
| ! | CGATAGATTTACAGATTATT+TGG | + | chr5_1:5357997-5358016 | Msa0713230:CDS | 25.0% |
| !! | TAAGTACTTCATCAATTTTG+TGG | + | chr5_1:5358035-5358054 | Msa0713230:intron | 25.0% |
| !!! | TAAAGTTTTGAACAAATGTG+TGG | - | chr5_1:5358121-5358140 | None:intergenic | 25.0% |
| ! | CATTTGTTCAAAACTTTAAC+GGG | + | chr5_1:5358123-5358142 | Msa0713230:intron | 25.0% |
| ! | ATTTGTTCAAAACTTTAACG+GGG | + | chr5_1:5358124-5358143 | Msa0713230:intron | 25.0% |
| !! | TTATCTAAGACATTACGTTA+AGG | - | chr5_1:5358190-5358209 | None:intergenic | 25.0% |
| ! | ACTAACTATCATCCTTAATA+TGG | - | chr5_1:5358275-5358294 | None:intergenic | 25.0% |
| !! | GTTATAAGAGGAATACTTTT+TGG | + | chr5_1:5358293-5358312 | Msa0713230:intron | 25.0% |
| !! | AGATATATTTTGTTACAACC+GGG | + | chr5_1:5358599-5358618 | Msa0713230:intron | 25.0% |
| !! | AATCAATAAAGTATTTCTCC+CGG | - | chr5_1:5358620-5358639 | None:intergenic | 25.0% |
| ! | TTATGTTGGACACATAATTA+AGG | + | chr5_1:5359791-5359810 | Msa0713230:CDS | 25.0% |
| !! | TAAAAGCATGTTGAATCATT+AGG | + | chr5_1:5359896-5359915 | Msa0713230:three_prime_UTR | 25.0% |
| ! | TTTTGGACAAGAAACTTTGT+TGG | - | chr5_1:5357212-5357231 | None:intergenic | 30.0% |
| CTGTAAAGAAAGACAAGAAA+TGG | + | chr5_1:5357314-5357333 | Msa0713230:CDS | 30.0% | |
| ATGGTCCAATGAAGTATAAT+TGG | + | chr5_1:5357542-5357561 | Msa0713230:CDS | 30.0% | |
| TGGTCCAATGAAGTATAATT+GGG | + | chr5_1:5357543-5357562 | Msa0713230:CDS | 30.0% | |
| ! | GTTATGTCTTTTCATCAATG+TGG | + | chr5_1:5357622-5357641 | Msa0713230:CDS | 30.0% |
| TCACATTTAAGAGCCTAAAT+TGG | - | chr5_1:5357712-5357731 | None:intergenic | 30.0% | |
| TTGGTTTACACAGACAAATT+AGG | + | chr5_1:5357872-5357891 | Msa0713230:CDS | 30.0% | |
| TGGTTTACACAGACAAATTA+GGG | + | chr5_1:5357873-5357892 | Msa0713230:CDS | 30.0% | |
| AAATCCTGAATATATCTCAC+TGG | + | chr5_1:5357901-5357920 | Msa0713230:CDS | 30.0% | |
| AATCCTGAATATATCTCACT+GGG | + | chr5_1:5357902-5357921 | Msa0713230:CDS | 30.0% | |
| GGATGATAGTTAGTTATAAG+AGG | + | chr5_1:5358281-5358300 | Msa0713230:intron | 30.0% | |
| TTATGACCAAATTCATTTGC+AGG | + | chr5_1:5358416-5358435 | Msa0713230:intron | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | + | chr5_1:5359161-5359180 | Msa0713230:CDS | 30.0% | |
| !! | ACTGGATTTTTCAAAAGAGA+AGG | + | chr5_1:5359186-5359205 | Msa0713230:CDS | 30.0% |
| ! | TTTTCAAAAGAGAAGGAACA+TGG | + | chr5_1:5359193-5359212 | Msa0713230:CDS | 30.0% |
| !! | ACTTGTTTGGAATATGCTTT+TGG | - | chr5_1:5359298-5359317 | None:intergenic | 30.0% |
| ! | AAAAGCATATTCCAAACAAG+TGG | + | chr5_1:5359297-5359316 | Msa0713230:CDS | 30.0% |
| TATAACACAAGGTTTCATGA+TGG | + | chr5_1:5359402-5359421 | Msa0713230:CDS | 30.0% | |
| TTTCACATGTATGGAAATGA+AGG | + | chr5_1:5359473-5359492 | Msa0713230:CDS | 30.0% | |
| AGATATGATTCAAGTGCTTA+TGG | + | chr5_1:5359606-5359625 | Msa0713230:CDS | 30.0% | |
| AATAAATAAGAGGTTGCTTG+AGG | + | chr5_1:5359674-5359693 | Msa0713230:CDS | 30.0% | |
| ATAAATAAGAGGTTGCTTGA+GGG | + | chr5_1:5359675-5359694 | Msa0713230:CDS | 30.0% | |
| TGATAATTGGAGGAAATTTG+TGG | + | chr5_1:5359698-5359717 | Msa0713230:CDS | 30.0% | |
| GGAGAATGATGTTATAATTG+AGG | + | chr5_1:5359812-5359831 | Msa0713230:CDS | 30.0% | |
| CATGATATATGTGTGTTCAA+TGG | - | chr5_1:5359852-5359871 | None:intergenic | 30.0% | |
| ACACACATATATCATGTTGA+CGG | + | chr5_1:5359856-5359875 | Msa0713230:three_prime_UTR | 30.0% | |
| TTCAGTTTGTGACCAAAAGA+TGG | - | chr5_1:5357241-5357260 | None:intergenic | 35.0% | |
| ! | AGCAATGAATGCTAGTTTGA+TGG | + | chr5_1:5357456-5357475 | Msa0713230:CDS | 35.0% |
| GCTTCCCAATTATACTTCAT+TGG | - | chr5_1:5357550-5357569 | None:intergenic | 35.0% | |
| GTTCAGATGGTACAAAAACA+TGG | + | chr5_1:5357583-5357602 | Msa0713230:CDS | 35.0% | |
| ! | ATGTCTTTTCATCAATGTGG+TGG | + | chr5_1:5357625-5357644 | Msa0713230:CDS | 35.0% |
| AGATATATTTGCATACCTGC+AGG | - | chr5_1:5357665-5357684 | None:intergenic | 35.0% | |
| CATTTAAGAGCCTAAATTGG+TGG | - | chr5_1:5357709-5357728 | None:intergenic | 35.0% | |
| TTTACACAGACAAATTAGGG+AGG | + | chr5_1:5357876-5357895 | Msa0713230:CDS | 35.0% | |
| TACCGAGTAATTTCGATACT+TGG | + | chr5_1:5358059-5358078 | Msa0713230:intron | 35.0% | |
| !! | AGCCAAGTATCGAAATTACT+CGG | - | chr5_1:5358064-5358083 | None:intergenic | 35.0% |
| GAACTTCCTGCAAATGAATT+TGG | - | chr5_1:5358425-5358444 | None:intergenic | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | + | chr5_1:5358527-5358546 | Msa0713230:CDS | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | - | chr5_1:5358536-5358555 | None:intergenic | 35.0% | |
| GGACACACAAAAAAGTTGAA+AGG | - | chr5_1:5358736-5358755 | None:intergenic | 35.0% | |
| TCCTAATTGTTGTGCTCAAA+TGG | + | chr5_1:5358753-5358772 | Msa0713230:intron | 35.0% | |
| TCCATTTGAGCACAACAATT+AGG | - | chr5_1:5358757-5358776 | None:intergenic | 35.0% | |
| ACAGTATATGAGATCATCCT+TGG | + | chr5_1:5359077-5359096 | Msa0713230:intron | 35.0% | |
| ! | TTGTATTGACCAGAATCATG+AGG | - | chr5_1:5359150-5359169 | None:intergenic | 35.0% |
| AATCAATTTCCTGAGGATAC+TGG | + | chr5_1:5359168-5359187 | Msa0713230:CDS | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | - | chr5_1:5359180-5359199 | None:intergenic | 35.0% | |
| ATGGAGATTTCTTCCTTGAT+TGG | + | chr5_1:5359226-5359245 | Msa0713230:CDS | 35.0% | |
| !! | TCAAGCAAACTTGTTGAACA+TGG | + | chr5_1:5359252-5359271 | Msa0713230:CDS | 35.0% |
| ATAGTTTCACTCCACTTGTT+TGG | - | chr5_1:5359311-5359330 | None:intergenic | 35.0% | |
| AAACTATCTGCCAAAATAGC+TGG | + | chr5_1:5359324-5359343 | Msa0713230:CDS | 35.0% | |
| ! | CCAATGAATTCCAGCTATTT+TGG | - | chr5_1:5359337-5359356 | None:intergenic | 35.0% |
| CCAAAATAGCTGGAATTCAT+TGG | + | chr5_1:5359334-5359353 | Msa0713230:CDS | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | - | chr5_1:5359435-5359454 | None:intergenic | 35.0% | |
| TAATTGTTCACCAGAAGGAT+TGG | + | chr5_1:5359518-5359537 | Msa0713230:CDS | 35.0% | |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | + | chr5_1:5359723-5359742 | Msa0713230:CDS | 35.0% |
| ! | TTGCTGAAGCTGATTCATAT+GGG | + | chr5_1:5359760-5359779 | Msa0713230:CDS | 35.0% |
| TATGGGACTGATCTTTATGT+TGG | + | chr5_1:5359777-5359796 | Msa0713230:CDS | 35.0% | |
| CACACATATATCATGTTGAC+GGG | + | chr5_1:5359857-5359876 | Msa0713230:three_prime_UTR | 35.0% | |
| ! | AAATTATCTAAGGGGTGCAT+TGG | - | chr5_1:5359950-5359969 | None:intergenic | 35.0% |
| AATGCACCCCTTAGATAATT+TGG | + | chr5_1:5359949-5359968 | Msa0713230:three_prime_UTR | 35.0% | |
| ACACCACCAAATTATCTAAG+GGG | - | chr5_1:5359958-5359977 | None:intergenic | 35.0% | |
| GACACCACCAAATTATCTAA+GGG | - | chr5_1:5359959-5359978 | None:intergenic | 35.0% | |
| AGACACCACCAAATTATCTA+AGG | - | chr5_1:5359960-5359979 | None:intergenic | 35.0% | |
| CTAAAAATGGCTCAAGCACT+TGG | + | chr5_1:5357121-5357140 | Msa0713230:exon | 40.0% | |
| !! | TGCTGATTCGAATAGAGTAC+CGG | + | chr5_1:5357375-5357394 | Msa0713230:CDS | 40.0% |
| AATGGCAACATCACAAACAC+CGG | - | chr5_1:5357397-5357416 | None:intergenic | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | + | chr5_1:5357402-5357421 | Msa0713230:CDS | 40.0% | |
| CCATTAGACACGGTAACAAT+GGG | + | chr5_1:5357412-5357431 | Msa0713230:CDS | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | + | chr5_1:5357500-5357519 | Msa0713230:CDS | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | + | chr5_1:5357504-5357523 | Msa0713230:CDS | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | + | chr5_1:5357523-5357542 | Msa0713230:CDS | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | + | chr5_1:5357570-5357589 | Msa0713230:CDS | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | + | chr5_1:5357634-5357653 | Msa0713230:CDS | 40.0% |
| TGTCTGTGTAAACCAACTCA+GGG | - | chr5_1:5357868-5357887 | None:intergenic | 40.0% | |
| TTGTCTGTGTAAACCAACTC+AGG | - | chr5_1:5357869-5357888 | None:intergenic | 40.0% | |
| CATCCCAGTGAGATATATTC+AGG | - | chr5_1:5357908-5357927 | None:intergenic | 40.0% | |
| !! | GTTTTGAACAAATGTGTGGC+TGG | - | chr5_1:5358117-5358136 | None:intergenic | 40.0% |
| TTAACGGGGCTATATATCGT+CGG | + | chr5_1:5358138-5358157 | Msa0713230:intron | 40.0% | |
| TCATTTGCAGGAAGTTCAAG+TGG | + | chr5_1:5358428-5358447 | Msa0713230:intron | 40.0% | |
| CATTTGCAGGAAGTTCAAGT+GGG | + | chr5_1:5358429-5358448 | Msa0713230:intron | 40.0% | |
| TCCAAGTTCCATCAGTTTCA+GGG | - | chr5_1:5358491-5358510 | None:intergenic | 40.0% | |
| TTCCAAGTTCCATCAGTTTC+AGG | - | chr5_1:5358492-5358511 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | + | chr5_1:5358504-5358523 | Msa0713230:CDS | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | - | chr5_1:5358519-5358538 | None:intergenic | 40.0% | |
| GGAACATGGAACACAGAATA+TGG | + | chr5_1:5359207-5359226 | Msa0713230:CDS | 40.0% | |
| GTTTGCTTGAGTACCAATCA+AGG | - | chr5_1:5359242-5359261 | None:intergenic | 40.0% | |
| CTGCAGGTTACTATAACACA+AGG | + | chr5_1:5359391-5359410 | Msa0713230:CDS | 40.0% | |
| GCACAAATGCTAGCAAAACA+TGG | + | chr5_1:5359438-5359457 | Msa0713230:CDS | 40.0% | |
| GGTGAACAATTAGCATCACA+AGG | - | chr5_1:5359510-5359529 | None:intergenic | 40.0% | |
| GATGCTAATTGTTCACCAGA+AGG | + | chr5_1:5359513-5359532 | Msa0713230:CDS | 40.0% | |
| ACTTGATTCACCAATCCTTC+TGG | - | chr5_1:5359531-5359550 | None:intergenic | 40.0% | |
| ! | AAGGATTGGTGAATCAAGTG+AGG | + | chr5_1:5359532-5359551 | Msa0713230:CDS | 40.0% |
| ATTGGTGAATCAAGTGAGGA+TGG | + | chr5_1:5359536-5359555 | Msa0713230:CDS | 40.0% | |
| !! | GGTCAAGTTTTGTCAACAAG+TGG | + | chr5_1:5359627-5359646 | Msa0713230:CDS | 40.0% |
| !! | TGTCTGATGGTGGTAAACTA+AGG | + | chr5_1:5359736-5359755 | Msa0713230:CDS | 40.0% |
| ! | CTTGCTGAAGCTGATTCATA+TGG | + | chr5_1:5359759-5359778 | Msa0713230:CDS | 40.0% |
| CTCTATTCGAATCAGCATCG+TGG | - | chr5_1:5357372-5357391 | None:intergenic | 45.0% | |
| GCCATTAGACACGGTAACAA+TGG | + | chr5_1:5357411-5357430 | Msa0713230:CDS | 45.0% | |
| CCCATTGTTACCGTGTCTAA+TGG | - | chr5_1:5357415-5357434 | None:intergenic | 45.0% | |
| TTAGACACGGTAACAATGGG+AGG | + | chr5_1:5357415-5357434 | Msa0713230:CDS | 45.0% | |
| TGCTGGAGTTGAAGGAGTAA+TGG | + | chr5_1:5357489-5357508 | Msa0713230:CDS | 45.0% | |
| ! | GAGTAATGGTTGATGCTTGG+TGG | + | chr5_1:5357503-5357522 | Msa0713230:CDS | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | + | chr5_1:5357505-5357524 | Msa0713230:CDS | 45.0% |
| ATAGCATTCCTCTACCTCCA+TGG | + | chr5_1:5357819-5357838 | Msa0713230:intron | 45.0% | |
| TAGCATTCCTCTACCTCCAT+GGG | + | chr5_1:5357820-5357839 | Msa0713230:intron | 45.0% | |
| AATCAGGAAGAACCCTGAGT+TGG | + | chr5_1:5357853-5357872 | Msa0713230:CDS | 45.0% | |
| TAATCGGAGTAGACCTGAAG+TGG | - | chr5_1:5357962-5357981 | None:intergenic | 45.0% | |
| GCGGAAGCTTCTCATGTAAT+CGG | - | chr5_1:5357978-5357997 | None:intergenic | 45.0% | |
| CCATCAGTTTCAGGGTAAGA+TGG | - | chr5_1:5358483-5358502 | None:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+TGG | + | chr5_1:5358480-5358499 | Msa0713230:CDS | 45.0% | |
| ACCCTGAAACTGATGGAACT+TGG | + | chr5_1:5358487-5358506 | Msa0713230:CDS | 45.0% | |
| GATGGAACTTGGAAGTTTCC+AGG | + | chr5_1:5358498-5358517 | Msa0713230:CDS | 45.0% | |
| GGCAATTGGGAAGAAAGAGT+GGG | + | chr5_1:5359113-5359132 | Msa0713230:CDS | 45.0% | |
| GCAATTGGGAAGAAAGAGTG+GGG | + | chr5_1:5359114-5359133 | Msa0713230:CDS | 45.0% | |
| AAGAAAGAGTGGGGAACAAG+TGG | + | chr5_1:5359123-5359142 | Msa0713230:CDS | 45.0% | |
| ACAAGTGGACCTCATGATTC+TGG | + | chr5_1:5359138-5359157 | Msa0713230:CDS | 45.0% | |
| CATGCAACTGAACTAACTGC+AGG | + | chr5_1:5359375-5359394 | Msa0713230:CDS | 45.0% | |
| AGTGAGGATGGCAACAAAGA+TGG | + | chr5_1:5359548-5359567 | Msa0713230:CDS | 45.0% | |
| ! | ACTTGCTGGTGAGAATGCAT+TGG | + | chr5_1:5359581-5359600 | Msa0713230:CDS | 45.0% |
| GGTTGCTTGAGGGTGATAAT+TGG | + | chr5_1:5359685-5359704 | Msa0713230:CDS | 45.0% | |
| TGCTTGAGGGTGATAATTGG+AGG | + | chr5_1:5359688-5359707 | Msa0713230:CDS | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | + | chr5_1:5359726-5359745 | Msa0713230:CDS | 45.0% | |
| GCACCCCTTAGATAATTTGG+TGG | + | chr5_1:5359952-5359971 | Msa0713230:three_prime_UTR | 45.0% | |
| !! | AATCATTAATATAAATTATT+TGG | + | chr5_1:5358642-5358661 | Msa0713230:intron | 5.0% |
| ! | TTGATGGCACTGAAGAGTGC+TGG | + | chr5_1:5357472-5357491 | Msa0713230:CDS | 50.0% |
| !! | CTGAAGAGTGCTGGAGTTGA+AGG | + | chr5_1:5357481-5357500 | Msa0713230:CDS | 50.0% |
| !! | GAAATGTTGGTGACTCCTGC+AGG | + | chr5_1:5357647-5357666 | Msa0713230:CDS | 50.0% |
| ATTTCTTCCAGCACCCATGG+AGG | - | chr5_1:5357836-5357855 | None:intergenic | 50.0% | |
| CTGATTTCTTCCAGCACCCA+TGG | - | chr5_1:5357839-5357858 | None:intergenic | 50.0% | |
| !! | CATGGGTGCTGGAAGAAATC+AGG | + | chr5_1:5357837-5357856 | Msa0713230:CDS | 50.0% |
| GATTCAGTGCCTGTTCTAGC+AGG | + | chr5_1:5357929-5357948 | Msa0713230:CDS | 50.0% | |
| GGAGTTCTTCCTGCTAGAAC+AGG | - | chr5_1:5357941-5357960 | None:intergenic | 50.0% | |
| AGCAGGAAGAACTCCACTTC+AGG | + | chr5_1:5357946-5357965 | Msa0713230:CDS | 50.0% | |
| CAGGAAGTTCAAGTGGGACT+AGG | + | chr5_1:5358435-5358454 | Msa0713230:intron | 50.0% | |
| AAGTGGGACTAGGTCCTTGT+GGG | + | chr5_1:5358445-5358464 | Msa0713230:CDS | 50.0% | |
| !! | TCATCCTTGGAAGCATCAGC+AGG | + | chr5_1:5359090-5359109 | Msa0713230:CDS | 50.0% |
| !! | CATCCTTGGAAGCATCAGCA+GGG | + | chr5_1:5359091-5359110 | Msa0713230:CDS | 50.0% |
| !! | ATCCTTGGAAGCATCAGCAG+GGG | + | chr5_1:5359092-5359111 | Msa0713230:CDS | 50.0% |
| AAGCATCAGCAGGGGCAATT+GGG | + | chr5_1:5359100-5359119 | Msa0713230:CDS | 50.0% | |
| GGGCAATTGGGAAGAAAGAG+TGG | + | chr5_1:5359112-5359131 | Msa0713230:CDS | 50.0% | |
| AGGATGGCAACAAAGATGGC+AGG | + | chr5_1:5359552-5359571 | Msa0713230:CDS | 50.0% | |
| ATGGCAACAAAGATGGCAGG+TGG | + | chr5_1:5359555-5359574 | Msa0713230:CDS | 50.0% | |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | + | chr5_1:5357510-5357529 | Msa0713230:CDS | 55.0% |
| CAAGTGGGACTAGGTCCTTG+TGG | + | chr5_1:5358444-5358463 | Msa0713230:CDS | 55.0% | |
| AGTGGGACTAGGTCCTTGTG+GGG | + | chr5_1:5358446-5358465 | Msa0713230:CDS | 55.0% | |
| GGATATCTCAGCTCCCCACA+AGG | - | chr5_1:5358462-5358481 | None:intergenic | 55.0% | |
| ! | GAAGCATCAGCAGGGGCAAT+TGG | + | chr5_1:5359099-5359118 | Msa0713230:CDS | 55.0% |
| ATGGCAGGTGGTGAACTTGC+TGG | + | chr5_1:5359567-5359586 | Msa0713230:CDS | 55.0% | |
| TCCTCTACCTCCATGGGTGC+TGG | + | chr5_1:5357826-5357845 | Msa0713230:CDS | 60.0% | |
| TCCAGCACCCATGGAGGTAG+AGG | - | chr5_1:5357830-5357849 | None:intergenic | 60.0% | |
| TGCCCCTGCTGATGCTTCCA+AGG | - | chr5_1:5359097-5359116 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 5357094 | 5360039 | 5357094 | ID=Msa0713230;Name=Msa0713230 |
| chr5_1 | mRNA | 5357094 | 5360039 | 5357094 | ID=Msa0713230-mRNA-1;Parent=Msa0713230;Name=Msa0713230-mRNA-1;_AED=0.29;_eAED=0.29;_QI=33|1|1|1|1|1|4|191|543 |
| chr5_1 | exon | 5357094 | 5357668 | 5357094 | ID=Msa0713230-mRNA-1:exon:2335;Parent=Msa0713230-mRNA-1 |
| chr5_1 | exon | 5357823 | 5358033 | 5357823 | ID=Msa0713230-mRNA-1:exon:2336;Parent=Msa0713230-mRNA-1 |
| chr5_1 | exon | 5358438 | 5358548 | 5358438 | ID=Msa0713230-mRNA-1:exon:2337;Parent=Msa0713230-mRNA-1 |
| chr5_1 | exon | 5359081 | 5360039 | 5359081 | ID=Msa0713230-mRNA-1:exon:2338;Parent=Msa0713230-mRNA-1 |
| chr5_1 | five_prime_UTR | 5357094 | 5357126 | 5357094 | ID=Msa0713230-mRNA-1:five_prime_utr;Parent=Msa0713230-mRNA-1 |
| chr5_1 | CDS | 5357127 | 5357668 | 5357127 | ID=Msa0713230-mRNA-1:cds;Parent=Msa0713230-mRNA-1 |
| chr5_1 | CDS | 5357823 | 5358033 | 5357823 | ID=Msa0713230-mRNA-1:cds;Parent=Msa0713230-mRNA-1 |
| chr5_1 | CDS | 5358438 | 5358548 | 5358438 | ID=Msa0713230-mRNA-1:cds;Parent=Msa0713230-mRNA-1 |
| chr5_1 | CDS | 5359081 | 5359848 | 5359081 | ID=Msa0713230-mRNA-1:cds;Parent=Msa0713230-mRNA-1 |
| chr5_1 | three_prime_UTR | 5359849 | 5360039 | 5359849 | ID=Msa0713230-mRNA-1:three_prime_utr;Parent=Msa0713230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
