Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577320 | XP_013446617.1 | 93.667 | 300 | 2 | 1 | 1 | 300 | 1 | 283 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577320 | sp|P35694|XTH2_SOYBN | 82.060 | 301 | 35 | 3 | 1 | 300 | 1 | 283 | 1.35e-178 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577320 | A0A072TT00 | 93.667 | 300 | 2 | 1 | 1 | 300 | 1 | 283 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0563970 | Msa0577320 | 0.917329 | 6.060461e-86 | -8.615850e-47 |
| Msa0577320 | Msa0622910 | 0.999858 | 0.000000e+00 | -8.615850e-47 |
| Msa0577320 | Msa0629440 | 0.805704 | 1.174142e-49 | -8.615850e-47 |
| Msa0577320 | Msa0667070 | 0.801178 | 1.017631e-48 | -8.615850e-47 |
| Msa0577320 | Msa0700490 | 0.971768 | 1.097343e-133 | -8.615850e-47 |
| Msa0577320 | Msa0713230 | -0.823491 | 1.346037e-53 | -8.615850e-47 |
| Msa0577320 | Msa0755080 | -0.845716 | 3.413901e-59 | -8.615850e-47 |
| Msa0577320 | Msa0755090 | -0.800457 | 1.428698e-48 | -8.615850e-47 |
| Msa0577320 | Msa0796950 | -0.837470 | 5.099435e-57 | -8.615850e-47 |
| Msa0577320 | Msa0797000 | -0.811460 | 6.923836e-51 | -8.615850e-47 |
| Msa0577320 | Msa0834450 | -0.845348 | 4.296841e-59 | -8.615850e-47 |
| Msa0577320 | Msa0834460 | -0.810195 | 1.300699e-50 | -8.615850e-47 |
| Msa0577320 | Msa1204600 | 0.825861 | 3.720551e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577320 | MtrunA17_Chr8g0377841 | 93.667 | 300 | 2 | 1 | 1 | 300 | 1 | 283 | 0.0 | 578 |
| Msa0577320 | MtrunA17_Chr3g0122021 | 80.208 | 288 | 38 | 3 | 14 | 300 | 10 | 279 | 3.40e-170 | 473 |
| Msa0577320 | MtrunA17_Chr3g0122031 | 80.208 | 288 | 38 | 3 | 14 | 300 | 10 | 279 | 3.87e-170 | 472 |
| Msa0577320 | MtrunA17_Chr8g0389641 | 68.027 | 294 | 40 | 2 | 5 | 298 | 3 | 242 | 1.47e-146 | 411 |
| Msa0577320 | MtrunA17_Chr4g0072611 | 66.782 | 289 | 74 | 2 | 15 | 298 | 9 | 280 | 3.07e-139 | 394 |
| Msa0577320 | MtrunA17_Chr7g0258911 | 65.306 | 294 | 80 | 2 | 10 | 298 | 3 | 279 | 3.10e-137 | 389 |
| Msa0577320 | MtrunA17_Chr4g0072671 | 68.182 | 286 | 65 | 2 | 24 | 300 | 19 | 287 | 6.52e-136 | 386 |
| Msa0577320 | MtrunA17_Chr4g0072601 | 59.736 | 303 | 97 | 3 | 1 | 298 | 1 | 283 | 1.49e-131 | 375 |
| Msa0577320 | MtrunA17_Chr2g0299061 | 63.300 | 297 | 82 | 2 | 12 | 298 | 7 | 286 | 2.18e-131 | 375 |
| Msa0577320 | MtrunA17_Chr4g0071341 | 63.636 | 286 | 80 | 3 | 21 | 299 | 14 | 282 | 2.32e-127 | 364 |
| Msa0577320 | MtrunA17_Chr4g0072681 | 66.807 | 238 | 52 | 2 | 73 | 300 | 25 | 245 | 1.73e-110 | 320 |
| Msa0577320 | MtrunA17_Chr5g0443391 | 50.694 | 288 | 125 | 1 | 11 | 298 | 8 | 278 | 1.30e-101 | 299 |
| Msa0577320 | MtrunA17_Chr7g0252621 | 50.000 | 298 | 120 | 5 | 14 | 300 | 10 | 289 | 5.09e-98 | 290 |
| Msa0577320 | MtrunA17_Chr7g0252631 | 52.174 | 276 | 108 | 4 | 31 | 300 | 32 | 289 | 1.01e-96 | 286 |
| Msa0577320 | MtrunA17_Chr6g0461731 | 48.993 | 298 | 120 | 5 | 16 | 299 | 32 | 311 | 2.07e-96 | 287 |
| Msa0577320 | MtrunA17_Chr6g0461761 | 48.837 | 301 | 122 | 5 | 14 | 300 | 7 | 289 | 2.23e-96 | 286 |
| Msa0577320 | MtrunA17_Chr7g0252601 | 48.026 | 304 | 126 | 5 | 9 | 298 | 2 | 287 | 2.39e-96 | 286 |
| Msa0577320 | MtrunA17_Chr4g0023961 | 45.333 | 300 | 129 | 6 | 15 | 300 | 12 | 290 | 2.81e-91 | 273 |
| Msa0577320 | MtrunA17_Chr3g0096651 | 48.352 | 273 | 122 | 2 | 28 | 298 | 27 | 282 | 6.05e-90 | 269 |
| Msa0577320 | MtrunA17_Chr4g0054431 | 46.735 | 291 | 133 | 4 | 13 | 298 | 14 | 287 | 7.77e-90 | 269 |
| Msa0577320 | MtrunA17_Chr6g0486581 | 46.284 | 296 | 131 | 4 | 12 | 298 | 7 | 283 | 7.78e-90 | 269 |
| Msa0577320 | MtrunA17_Chr4g0054451 | 45.973 | 298 | 138 | 5 | 7 | 298 | 9 | 289 | 8.03e-90 | 269 |
| Msa0577320 | MtrunA17_Chr2g0323161 | 44.000 | 300 | 132 | 6 | 15 | 298 | 7 | 286 | 3.43e-88 | 265 |
| Msa0577320 | MtrunA17_Chr1g0206681 | 45.205 | 292 | 134 | 3 | 15 | 299 | 20 | 292 | 3.97e-86 | 260 |
| Msa0577320 | MtrunA17_Chr1g0206081 | 43.709 | 302 | 143 | 7 | 10 | 299 | 9 | 295 | 5.34e-83 | 252 |
| Msa0577320 | MtrunA17_Chr8g0390201 | 55.556 | 198 | 79 | 4 | 110 | 298 | 12 | 209 | 2.23e-75 | 229 |
| Msa0577320 | MtrunA17_Chr8g0340001 | 42.387 | 243 | 115 | 4 | 62 | 298 | 8 | 231 | 6.81e-65 | 203 |
| Msa0577320 | MtrunA17_Chr7g0264731 | 37.906 | 277 | 145 | 6 | 30 | 299 | 36 | 292 | 1.14e-58 | 189 |
| Msa0577320 | MtrunA17_Chr1g0180451 | 37.681 | 276 | 145 | 6 | 30 | 298 | 39 | 294 | 5.57e-57 | 185 |
| Msa0577320 | MtrunA17_Chr4g0028221 | 38.768 | 276 | 142 | 7 | 30 | 298 | 49 | 304 | 2.25e-56 | 184 |
| Msa0577320 | MtrunA17_Chr2g0327411 | 38.806 | 268 | 137 | 6 | 30 | 289 | 53 | 301 | 1.86e-55 | 182 |
| Msa0577320 | MtrunA17_Chr2g0303861 | 38.491 | 265 | 127 | 8 | 31 | 284 | 29 | 268 | 4.48e-54 | 177 |
| Msa0577320 | MtrunA17_Chr4g0072641 | 65.574 | 122 | 33 | 2 | 178 | 299 | 37 | 149 | 6.18e-51 | 165 |
| Msa0577320 | MtrunA17_Chr8g0375981 | 32.971 | 276 | 163 | 4 | 30 | 298 | 30 | 290 | 2.77e-48 | 164 |
| Msa0577320 | MtrunA17_Chr8g0365231 | 32.895 | 304 | 151 | 9 | 18 | 298 | 37 | 310 | 1.35e-47 | 161 |
| Msa0577320 | MtrunA17_Chr2g0303721 | 34.539 | 304 | 155 | 10 | 5 | 296 | 4 | 275 | 2.26e-47 | 160 |
| Msa0577320 | MtrunA17_Chr5g0410621 | 34.944 | 269 | 144 | 8 | 43 | 299 | 57 | 306 | 7.73e-45 | 155 |
| Msa0577320 | MtrunA17_Chr7g0235541 | 39.535 | 215 | 108 | 6 | 78 | 286 | 1 | 199 | 3.13e-44 | 149 |
| Msa0577320 | MtrunA17_Chr1g0161951 | 33.818 | 275 | 159 | 5 | 31 | 298 | 33 | 291 | 4.52e-44 | 152 |
| Msa0577320 | MtrunA17_Chr8g0382041 | 32.130 | 277 | 163 | 6 | 31 | 298 | 34 | 294 | 3.30e-41 | 145 |
| Msa0577320 | MtrunA17_Chr4g0072631 | 61.333 | 75 | 27 | 1 | 6 | 78 | 4 | 78 | 1.92e-25 | 97.8 |
| Msa0577320 | MtrunA17_Chr8g0374231 | 43.689 | 103 | 50 | 5 | 204 | 299 | 1 | 102 | 3.69e-18 | 78.6 |
| Msa0577320 | MtrunA17_Chr8g0390181 | 48.810 | 84 | 40 | 2 | 13 | 96 | 11 | 91 | 2.28e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577320 | AT3G23730.1 | 69.831 | 295 | 62 | 4 | 14 | 298 | 9 | 286 | 1.61e-153 | 431 |
| Msa0577320 | AT4G14130.1 | 69.625 | 293 | 66 | 3 | 12 | 298 | 9 | 284 | 6.41e-152 | 427 |
| Msa0577320 | AT4G25810.1 | 61.301 | 292 | 89 | 2 | 14 | 298 | 9 | 283 | 9.12e-131 | 373 |
| Msa0577320 | AT5G57550.1 | 58.076 | 291 | 103 | 2 | 12 | 300 | 11 | 284 | 4.28e-126 | 361 |
| Msa0577320 | AT4G30270.1 | 59.310 | 290 | 91 | 3 | 10 | 299 | 4 | 266 | 6.87e-126 | 360 |
| Msa0577320 | AT5G57560.1 | 57.627 | 295 | 100 | 3 | 12 | 298 | 4 | 281 | 1.16e-123 | 355 |
| Msa0577320 | AT5G57540.1 | 59.712 | 278 | 88 | 3 | 28 | 299 | 23 | 282 | 5.36e-122 | 351 |
| Msa0577320 | AT5G57530.1 | 59.075 | 281 | 91 | 3 | 25 | 299 | 21 | 283 | 4.24e-121 | 348 |
| Msa0577320 | AT4G25820.1 | 60.071 | 283 | 89 | 3 | 22 | 298 | 21 | 285 | 1.39e-118 | 342 |
| Msa0577320 | AT5G48070.1 | 56.164 | 292 | 105 | 4 | 12 | 299 | 10 | 282 | 7.38e-117 | 338 |
| Msa0577320 | AT2G18800.1 | 54.698 | 298 | 100 | 4 | 20 | 299 | 17 | 297 | 6.41e-116 | 336 |
| Msa0577320 | AT4G30280.1 | 56.164 | 292 | 105 | 4 | 12 | 299 | 10 | 282 | 1.30e-107 | 314 |
| Msa0577320 | AT4G30290.1 | 55.822 | 292 | 106 | 4 | 12 | 299 | 5 | 277 | 8.91e-107 | 312 |
| Msa0577320 | AT1G65310.2 | 58.696 | 276 | 91 | 4 | 28 | 299 | 48 | 304 | 1.12e-105 | 310 |
| Msa0577320 | AT1G65310.1 | 58.696 | 276 | 91 | 4 | 28 | 299 | 26 | 282 | 1.24e-105 | 309 |
| Msa0577320 | AT5G13870.2 | 49.829 | 293 | 120 | 5 | 15 | 298 | 13 | 287 | 7.48e-94 | 280 |
| Msa0577320 | AT5G13870.1 | 49.829 | 293 | 120 | 5 | 15 | 298 | 13 | 287 | 7.48e-94 | 280 |
| Msa0577320 | AT5G13870.3 | 49.829 | 293 | 120 | 5 | 15 | 298 | 13 | 287 | 7.48e-94 | 280 |
| Msa0577320 | AT4G03210.1 | 47.138 | 297 | 129 | 6 | 12 | 300 | 10 | 286 | 5.73e-93 | 277 |
| Msa0577320 | AT2G06850.1 | 51.087 | 276 | 111 | 4 | 31 | 300 | 35 | 292 | 1.49e-92 | 276 |
| Msa0577320 | AT5G65730.1 | 44.863 | 292 | 138 | 5 | 12 | 298 | 17 | 290 | 4.89e-88 | 265 |
| Msa0577320 | AT4G37800.1 | 44.518 | 301 | 144 | 5 | 5 | 299 | 7 | 290 | 2.22e-87 | 263 |
| Msa0577320 | AT4G28850.1 | 44.966 | 298 | 135 | 3 | 12 | 299 | 10 | 288 | 7.21e-86 | 259 |
| Msa0577320 | AT2G06850.2 | 52.033 | 246 | 94 | 4 | 61 | 300 | 5 | 232 | 4.27e-85 | 255 |
| Msa0577320 | AT4G03210.2 | 51.220 | 246 | 94 | 5 | 63 | 300 | 31 | 258 | 4.73e-85 | 256 |
| Msa0577320 | AT1G11545.1 | 43.226 | 310 | 148 | 7 | 1 | 299 | 8 | 300 | 4.26e-83 | 253 |
| Msa0577320 | AT2G14620.1 | 42.088 | 297 | 148 | 4 | 10 | 299 | 16 | 295 | 1.51e-81 | 249 |
| Msa0577320 | AT2G14620.2 | 44.534 | 247 | 113 | 4 | 60 | 299 | 16 | 245 | 8.74e-73 | 224 |
| Msa0577320 | AT2G14620.3 | 44.492 | 236 | 107 | 3 | 71 | 299 | 16 | 234 | 1.32e-70 | 219 |
| Msa0577320 | AT4G13090.1 | 39.404 | 302 | 150 | 7 | 11 | 298 | 6 | 288 | 1.71e-68 | 215 |
| Msa0577320 | AT3G25050.1 | 38.989 | 277 | 140 | 5 | 30 | 298 | 34 | 289 | 3.00e-67 | 212 |
| Msa0577320 | AT4G13080.1 | 41.026 | 273 | 136 | 6 | 31 | 298 | 39 | 291 | 1.39e-65 | 207 |
| Msa0577320 | AT2G36870.1 | 38.406 | 276 | 143 | 6 | 30 | 298 | 42 | 297 | 8.63e-57 | 185 |
| Msa0577320 | AT3G44990.1 | 39.130 | 276 | 139 | 9 | 31 | 298 | 39 | 293 | 4.75e-53 | 175 |
| Msa0577320 | AT1G32170.1 | 33.333 | 312 | 172 | 9 | 3 | 298 | 2 | 293 | 1.01e-48 | 166 |
| Msa0577320 | AT1G10550.1 | 32.847 | 274 | 135 | 6 | 50 | 298 | 60 | 309 | 1.16e-47 | 162 |
| Msa0577320 | AT1G14720.1 | 34.420 | 276 | 157 | 6 | 31 | 298 | 31 | 290 | 3.64e-45 | 156 |
| Msa0577320 | AT2G01850.1 | 32.852 | 277 | 147 | 6 | 30 | 290 | 30 | 283 | 6.59e-44 | 153 |
| Msa0577320 | AT3G48580.1 | 31.618 | 272 | 146 | 9 | 37 | 298 | 32 | 273 | 1.10e-37 | 135 |
| Msa0577320 | AT4G18990.1 | 32.117 | 274 | 135 | 7 | 53 | 298 | 62 | 312 | 2.65e-37 | 136 |
| Msa0577320 | AT4G18990.2 | 33.498 | 203 | 106 | 5 | 120 | 298 | 41 | 238 | 1.38e-32 | 122 |
| Msa0577320 | AT3G48580.3 | 30.579 | 242 | 135 | 8 | 60 | 298 | 3 | 214 | 1.45e-32 | 120 |
| Msa0577320 | AT2G36870.2 | 37.255 | 153 | 75 | 3 | 30 | 177 | 42 | 178 | 2.13e-27 | 105 |
| Msa0577320 | AT3G48580.2 | 28.938 | 273 | 132 | 11 | 37 | 298 | 32 | 253 | 8.08e-23 | 95.5 |
Find 87 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATAATGGTTAGCTTTA+TGG | 0.091663 | 4_1:+81620151 | Msa0577320:CDS |
| ACATTCTTGAATACCCTTAT+TGG | 0.161725 | 4_1:-81621813 | None:intergenic |
| ATTCTCATTGGTTGGTTCTT+TGG | 0.193461 | 4_1:-81621858 | None:intergenic |
| TCAAAGAGAGAGTACCTATT+TGG | 0.231310 | 4_1:+81620302 | Msa0577320:CDS |
| TGGTTGATAACATGCCAATA+AGG | 0.266753 | 4_1:+81621799 | Msa0577320:CDS |
| ATATTTGTGTGAAGAATATA+AGG | 0.297093 | 4_1:-81621575 | None:intergenic |
| GTTTATGCTAATTGCTATAA+TGG | 0.308914 | 4_1:+81620139 | Msa0577320:CDS |
| TAGCCACTAGGCACTTTATA+AGG | 0.315025 | 4_1:+81622157 | Msa0577320:exon |
| CTCATCATGGGTTGGCCCTT+GGG | 0.318423 | 4_1:-81621516 | None:intergenic |
| TGGATTTAACTGCAGATTCT+TGG | 0.319730 | 4_1:+81621779 | Msa0577320:intron |
| ATAGTTGTTAATGTACATTA+AGG | 0.323492 | 4_1:+81622309 | Msa0577320:three_prime_UTR |
| TCCACACTTACTCCATCATT+TGG | 0.354596 | 4_1:+81621663 | Msa0577320:CDS |
| TTCAAGAATGTTGAATCTAT+TGG | 0.357714 | 4_1:+81621825 | Msa0577320:CDS |
| ATAAATGCGCTTGATGCTTA+TGG | 0.368751 | 4_1:+81622041 | Msa0577320:CDS |
| GAGAACAACAATTCTACCTT+TGG | 0.383624 | 4_1:+81621621 | Msa0577320:CDS |
| TCTCATCATGGGTTGGCCCT+TGG | 0.389738 | 4_1:-81621517 | None:intergenic |
| AAGAGTACCAGAATTGAAAA+TGG | 0.390935 | 4_1:-81620425 | None:intergenic |
| GCATATCAATTCTCCCAAAT+AGG | 0.393235 | 4_1:-81620316 | None:intergenic |
| CAAAGAGAGAGTACCTATTT+GGG | 0.397766 | 4_1:+81620303 | Msa0577320:CDS |
| GCCTGTGGAATGCTGATGAT+TGG | 0.400428 | 4_1:+81621889 | Msa0577320:CDS |
| ATTGGTTGGTTCTTTGGAAA+AGG | 0.403105 | 4_1:-81621852 | None:intergenic |
| ACTGAGTGGCCTTGAAATTA+CGG | 0.411712 | 4_1:-81621971 | None:intergenic |
| CTTGACAAAGTCTCTGGCTC+TGG | 0.412130 | 4_1:+81620272 | Msa0577320:CDS |
| AGTTGGATTAATCATTTCAA+TGG | 0.414765 | 4_1:+81622212 | Msa0577320:three_prime_UTR |
| TAGTTGTTAATGTACATTAA+GGG | 0.422289 | 4_1:+81622310 | Msa0577320:three_prime_UTR |
| GCCTAGTGGCTACACTCAAC+AGG | 0.435642 | 4_1:-81622146 | None:intergenic |
| CTTTCCCTTGACAAAGTCTC+TGG | 0.439703 | 4_1:+81620266 | Msa0577320:CDS |
| CTTGTTGCTGGCAACTCAGC+TGG | 0.440806 | 4_1:+81620347 | Msa0577320:CDS |
| ATGCAGCTTAAGCTTGTTGC+TGG | 0.445241 | 4_1:+81620335 | Msa0577320:CDS |
| TGTATAAAAGTGATTATAGT+AGG | 0.446990 | 4_1:-81620402 | None:intergenic |
| GTATGCTGTAAAGGGTGCTT+TGG | 0.447810 | 4_1:-81621946 | None:intergenic |
| ATTACGGTAGTATGCTGTAA+AGG | 0.449817 | 4_1:-81621955 | None:intergenic |
| AGCATACTACCGTAATTTCA+AGG | 0.452720 | 4_1:+81621962 | Msa0577320:CDS |
| GGTTGATAACATGCCAATAA+GGG | 0.455271 | 4_1:+81621800 | Msa0577320:CDS |
| GTTCAAATTCTGATGCTGAA+TGG | 0.458018 | 4_1:+81622015 | Msa0577320:CDS |
| ACTCAAAATCAATCTCATCA+TGG | 0.481396 | 4_1:-81621529 | None:intergenic |
| AGGCTGGAATAGATTCTCAT+TGG | 0.482882 | 4_1:-81621870 | None:intergenic |
| AGTGACTTACATGATGTGTT+GGG | 0.486675 | 4_1:-81621690 | None:intergenic |
| TTTATGGTGGCTACTTGTGC+TGG | 0.490303 | 4_1:+81620167 | Msa0577320:CDS |
| TTTCACCAATCCACCTCTTG+TGG | 0.492660 | 4_1:-81621913 | None:intergenic |
| TGGAATAGATTCTCATTGGT+TGG | 0.493361 | 4_1:-81621866 | None:intergenic |
| ATCATCAGCATTCCACAGGC+TGG | 0.499092 | 4_1:-81621886 | None:intergenic |
| CTCAAAATCAATCTCATCAT+GGG | 0.501697 | 4_1:-81621528 | None:intergenic |
| CCTGTGGAATGCTGATGATT+GGG | 0.507771 | 4_1:+81621890 | Msa0577320:CDS |
| GTGGTACAGCTGTCATCCCA+AGG | 0.509097 | 4_1:+81621500 | Msa0577320:intron |
| TTACGGTAGTATGCTGTAAA+GGG | 0.510381 | 4_1:-81621954 | None:intergenic |
| AATATCTTTACTCAAGGTAA+AGG | 0.513107 | 4_1:+81621593 | Msa0577320:CDS |
| ATTTGAACTTAAAGAAGACT+TGG | 0.523911 | 4_1:-81622000 | None:intergenic |
| CACTCAACAGGAACACCTTG+TGG | 0.524101 | 4_1:-81622134 | None:intergenic |
| ACCAAGACTTTGATCTAACA+TGG | 0.525267 | 4_1:+81620198 | Msa0577320:CDS |
| ACTCAACAGGAACACCTTGT+GGG | 0.532653 | 4_1:-81622133 | None:intergenic |
| AACCGTGCTAAGATATTCAA+TGG | 0.538829 | 4_1:+81620227 | Msa0577320:CDS |
| GTGTTGGGGCTTCCAAATGA+TGG | 0.542384 | 4_1:-81621675 | None:intergenic |
| ATGGTAGAAGAAGATTGAGA+TGG | 0.542822 | 4_1:+81622060 | Msa0577320:CDS |
| CCCAATCATCAGCATTCCAC+AGG | 0.544118 | 4_1:-81621890 | None:intergenic |
| TCCTGTTGAGTGTAGCCACT+AGG | 0.556001 | 4_1:+81622145 | Msa0577320:CDS |
| AGTTGTTAATGTACATTAAG+GGG | 0.558771 | 4_1:+81622311 | Msa0577320:three_prime_UTR |
| CCCATGTTAGATCAAAGTCT+TGG | 0.564659 | 4_1:-81620199 | None:intergenic |
| CACACAAATATCTTTACTCA+AGG | 0.572059 | 4_1:+81621587 | Msa0577320:CDS |
| TTCTAGTGGGGTCAAACCAA+AGG | 0.574586 | 4_1:-81621637 | None:intergenic |
| TATAATGGTTAGCTTTATGG+TGG | 0.576994 | 4_1:+81620154 | Msa0577320:CDS |
| AAATCAATCTCATCATGGGT+TGG | 0.583038 | 4_1:-81621524 | None:intergenic |
| TTGGGCCACAAGAGGTGGAT+TGG | 0.585521 | 4_1:+81621908 | Msa0577320:CDS |
| TGGTAGAAGAAGATTGAGAT+GGG | 0.586469 | 4_1:+81622061 | Msa0577320:CDS |
| GATGATTGGGCCACAAGAGG+TGG | 0.588016 | 4_1:+81621903 | Msa0577320:CDS |
| TAAGTGTGGAAGTTTCTAGT+GGG | 0.590801 | 4_1:-81621650 | None:intergenic |
| CAGAGCCAGAGACTTTGTCA+AGG | 0.592607 | 4_1:-81620271 | None:intergenic |
| TCCAAATGATGGAGTAAGTG+TGG | 0.592696 | 4_1:-81621664 | None:intergenic |
| GTGGATTGGTGAAAACTGAT+TGG | 0.593499 | 4_1:+81621922 | Msa0577320:CDS |
| TAGTGACTTACATGATGTGT+TGG | 0.593803 | 4_1:-81621691 | None:intergenic |
| CACATGAAACTCATTGTGAG+TGG | 0.603766 | 4_1:-81620117 | None:intergenic |
| CACCATTGAATATCTTAGCA+CGG | 0.605044 | 4_1:-81620229 | None:intergenic |
| CCAAGACTTTGATCTAACAT+GGG | 0.605585 | 4_1:+81620199 | Msa0577320:CDS |
| GAGTTCTTGGGAAACACAAG+TGG | 0.615147 | 4_1:+81621548 | Msa0577320:CDS |
| TGAGAATCTATTCCAGCCTG+TGG | 0.616171 | 4_1:+81621874 | Msa0577320:CDS |
| TATTTGTGTGAAGAATATAA+GGG | 0.617384 | 4_1:-81621574 | None:intergenic |
| AGAGCCAGAGACTTTGTCAA+GGG | 0.627053 | 4_1:-81620270 | None:intergenic |
| GTAAGTGTGGAAGTTTCTAG+TGG | 0.637553 | 4_1:-81621651 | None:intergenic |
| GTGACTTACATGATGTGTTG+GGG | 0.642539 | 4_1:-81621689 | None:intergenic |
| GCTGATGATTGGGCCACAAG+AGG | 0.655452 | 4_1:+81621900 | Msa0577320:CDS |
| TGGTACAGCTGTCATCCCAA+GGG | 0.668640 | 4_1:+81621501 | Msa0577320:intron |
| GATCTTAAGCGATTCCCACA+AGG | 0.682204 | 4_1:+81622119 | Msa0577320:CDS |
| CAAGACTTTGATCTAACATG+GGG | 0.690513 | 4_1:+81620200 | Msa0577320:CDS |
| CGTGCTAAGATATTCAATGG+TGG | 0.692895 | 4_1:+81620230 | Msa0577320:CDS |
| AAGTGTGGAAGTTTCTAGTG+GGG | 0.697172 | 4_1:-81621649 | None:intergenic |
| GAACCTTATAAAGTGCCTAG+TGG | 0.721452 | 4_1:-81622160 | None:intergenic |
| AGACTTGGTTGAGAACTGAG+TGG | 0.735795 | 4_1:-81621985 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAATATCTTAGATAT+TGG | + | chr4_1:81621152-81621171 | Msa0577320:intron | 10.0% |
| !!! | ATTAATTTATAAATTTGTTG+TGG | + | chr4_1:81621481-81621500 | Msa0577320:intron | 10.0% |
| !! | ATTAAAAATATCTTAGATAT+TGG | + | chr4_1:81621152-81621171 | Msa0577320:intron | 10.0% |
| !!! | ATTAATTTATAAATTTGTTG+TGG | + | chr4_1:81621481-81621500 | Msa0577320:intron | 10.0% |
| !! | GATTTATAAAGTAAAAACAA+GGG | - | chr4_1:81620652-81620671 | None:intergenic | 15.0% |
| !! | AGATTTATAAAGTAAAAACA+AGG | - | chr4_1:81620653-81620672 | None:intergenic | 15.0% |
| !!! | TTGGTCTTTTTTTTTAAAAA+TGG | + | chr4_1:81621005-81621024 | Msa0577320:intron | 15.0% |
| !! | ATTTAATGACGAAAATATAA+TGG | + | chr4_1:81621118-81621137 | Msa0577320:intron | 15.0% |
| !! | ATCTAACTAAATTATTGATA+TGG | - | chr4_1:81621463-81621482 | None:intergenic | 15.0% |
| !!! | AAAAATTTTACTTCTAAAGT+TGG | + | chr4_1:81622195-81622214 | Msa0577320:three_prime_UTR | 15.0% |
| !! | GATTTATAAAGTAAAAACAA+GGG | - | chr4_1:81620652-81620671 | None:intergenic | 15.0% |
| !! | AGATTTATAAAGTAAAAACA+AGG | - | chr4_1:81620653-81620672 | None:intergenic | 15.0% |
| !!! | TTGGTCTTTTTTTTTAAAAA+TGG | + | chr4_1:81621005-81621024 | Msa0577320:intron | 15.0% |
| !! | ATTTAATGACGAAAATATAA+TGG | + | chr4_1:81621118-81621137 | Msa0577320:intron | 15.0% |
| !! | ATCTAACTAAATTATTGATA+TGG | - | chr4_1:81621463-81621482 | None:intergenic | 15.0% |
| !!! | AAAAATTTTACTTCTAAAGT+TGG | + | chr4_1:81622195-81622214 | Msa0577320:three_prime_UTR | 15.0% |
| !! | TGTATAAAAGTGATTATAGT+AGG | - | chr4_1:81620405-81620424 | None:intergenic | 20.0% |
| !! | TTTATGTACATTAATCAACT+TGG | + | chr4_1:81620986-81621005 | Msa0577320:intron | 20.0% |
| !!! | AATATAGTTAATGTTGACTT+TGG | + | chr4_1:81621058-81621077 | Msa0577320:intron | 20.0% |
| !!! | TAAGTTTCAAATGAATGTTT+TGG | - | chr4_1:81621085-81621104 | None:intergenic | 20.0% |
| !! | TATGTGTTAAAAATCCATAT+TGG | - | chr4_1:81621201-81621220 | None:intergenic | 20.0% |
| !! | ATCTTGAAATTTAACCAATA+TGG | + | chr4_1:81621328-81621347 | Msa0577320:intron | 20.0% |
| !! | TATGAAATTATGTGAAGAAT+CGG | - | chr4_1:81621375-81621394 | None:intergenic | 20.0% |
| !! | TATTTGTGTGAAGAATATAA+GGG | - | chr4_1:81621577-81621596 | None:intergenic | 20.0% |
| !! | ATATTTGTGTGAAGAATATA+AGG | - | chr4_1:81621578-81621597 | None:intergenic | 20.0% |
| !! | ATAGTTGTTAATGTACATTA+AGG | + | chr4_1:81622309-81622328 | Msa0577320:three_prime_UTR | 20.0% |
| !! | TAGTTGTTAATGTACATTAA+GGG | + | chr4_1:81622310-81622329 | Msa0577320:three_prime_UTR | 20.0% |
| !! | TGTATAAAAGTGATTATAGT+AGG | - | chr4_1:81620405-81620424 | None:intergenic | 20.0% |
| !! | TTTATGTACATTAATCAACT+TGG | + | chr4_1:81620986-81621005 | Msa0577320:intron | 20.0% |
| !!! | AATATAGTTAATGTTGACTT+TGG | + | chr4_1:81621058-81621077 | Msa0577320:intron | 20.0% |
| !!! | TAAGTTTCAAATGAATGTTT+TGG | - | chr4_1:81621085-81621104 | None:intergenic | 20.0% |
| !! | TATGTGTTAAAAATCCATAT+TGG | - | chr4_1:81621201-81621220 | None:intergenic | 20.0% |
| !! | ATCTTGAAATTTAACCAATA+TGG | + | chr4_1:81621328-81621347 | Msa0577320:intron | 20.0% |
| !! | TATGAAATTATGTGAAGAAT+CGG | - | chr4_1:81621375-81621394 | None:intergenic | 20.0% |
| !! | TATTTGTGTGAAGAATATAA+GGG | - | chr4_1:81621577-81621596 | None:intergenic | 20.0% |
| !! | ATATTTGTGTGAAGAATATA+AGG | - | chr4_1:81621578-81621597 | None:intergenic | 20.0% |
| !! | ATAGTTGTTAATGTACATTA+AGG | + | chr4_1:81622309-81622328 | Msa0577320:three_prime_UTR | 20.0% |
| !! | TAGTTGTTAATGTACATTAA+GGG | + | chr4_1:81622310-81622329 | Msa0577320:three_prime_UTR | 20.0% |
| ! | GTTTATGCTAATTGCTATAA+TGG | + | chr4_1:81620139-81620158 | Msa0577320:CDS | 25.0% |
| !! | TTATACACCATTTTCAATTC+TGG | + | chr4_1:81620418-81620437 | Msa0577320:CDS | 25.0% |
| ! | ATACAACAAGGTTATAATGA+TGG | - | chr4_1:81620467-81620486 | None:intergenic | 25.0% |
| ! | TGAAGAATCAATACTAAAGT+TGG | - | chr4_1:81620782-81620801 | None:intergenic | 25.0% |
| !!! | ACTTTAGTATTGATTCTTCA+AGG | + | chr4_1:81620782-81620801 | Msa0577320:intron | 25.0% |
| !! | AATGACGAAAATATAATGGA+TGG | + | chr4_1:81621122-81621141 | Msa0577320:intron | 25.0% |
| ! | AATATCTTTACTCAAGGTAA+AGG | + | chr4_1:81621593-81621612 | Msa0577320:CDS | 25.0% |
| ! | CATTAGTTACTTAATGCTTA+AGG | - | chr4_1:81621752-81621771 | None:intergenic | 25.0% |
| ! | TAAGTAACTAATGCATGAAT+TGG | + | chr4_1:81621759-81621778 | Msa0577320:intron | 25.0% |
| ! | TTCAAGAATGTTGAATCTAT+TGG | + | chr4_1:81621825-81621844 | Msa0577320:CDS | 25.0% |
| ! | ATTTGAACTTAAAGAAGACT+TGG | - | chr4_1:81622003-81622022 | None:intergenic | 25.0% |
| ! | AGTTGGATTAATCATTTCAA+TGG | + | chr4_1:81622212-81622231 | Msa0577320:three_prime_UTR | 25.0% |
| ! | AGTTGTTAATGTACATTAAG+GGG | + | chr4_1:81622311-81622330 | Msa0577320:three_prime_UTR | 25.0% |
| ! | GTTTATGCTAATTGCTATAA+TGG | + | chr4_1:81620139-81620158 | Msa0577320:CDS | 25.0% |
| !! | TTATACACCATTTTCAATTC+TGG | + | chr4_1:81620418-81620437 | Msa0577320:CDS | 25.0% |
| ! | ATACAACAAGGTTATAATGA+TGG | - | chr4_1:81620467-81620486 | None:intergenic | 25.0% |
| ! | TGAAGAATCAATACTAAAGT+TGG | - | chr4_1:81620782-81620801 | None:intergenic | 25.0% |
| !!! | ACTTTAGTATTGATTCTTCA+AGG | + | chr4_1:81620782-81620801 | Msa0577320:intron | 25.0% |
| !! | AATGACGAAAATATAATGGA+TGG | + | chr4_1:81621122-81621141 | Msa0577320:intron | 25.0% |
| ! | AATATCTTTACTCAAGGTAA+AGG | + | chr4_1:81621593-81621612 | Msa0577320:CDS | 25.0% |
| ! | CATTAGTTACTTAATGCTTA+AGG | - | chr4_1:81621752-81621771 | None:intergenic | 25.0% |
| ! | TAAGTAACTAATGCATGAAT+TGG | + | chr4_1:81621759-81621778 | Msa0577320:intron | 25.0% |
| ! | TTCAAGAATGTTGAATCTAT+TGG | + | chr4_1:81621825-81621844 | Msa0577320:CDS | 25.0% |
| ! | ATTTGAACTTAAAGAAGACT+TGG | - | chr4_1:81622003-81622022 | None:intergenic | 25.0% |
| ! | AGTTGGATTAATCATTTCAA+TGG | + | chr4_1:81622212-81622231 | Msa0577320:three_prime_UTR | 25.0% |
| ! | AGTTGTTAATGTACATTAAG+GGG | + | chr4_1:81622311-81622330 | Msa0577320:three_prime_UTR | 25.0% |
| !! | TGCTATAATGGTTAGCTTTA+TGG | + | chr4_1:81620151-81620170 | Msa0577320:CDS | 30.0% |
| !! | TATAATGGTTAGCTTTATGG+TGG | + | chr4_1:81620154-81620173 | Msa0577320:CDS | 30.0% |
| !! | AAGAGTACCAGAATTGAAAA+TGG | - | chr4_1:81620428-81620447 | None:intergenic | 30.0% |
| !! | GGTTATAATGATGGATGAAA+TGG | - | chr4_1:81620458-81620477 | None:intergenic | 30.0% |
| AGCATGTATATGATACAACA+AGG | - | chr4_1:81620479-81620498 | None:intergenic | 30.0% | |
| ATAAGCTCTTCAGAAATAGT+AGG | - | chr4_1:81620587-81620606 | None:intergenic | 30.0% | |
| !! | TAGGTCAATAATGGTCTTAT+TGG | - | chr4_1:81620827-81620846 | None:intergenic | 30.0% |
| GTGTAAAAGTAGGTCAATAA+TGG | - | chr4_1:81620836-81620855 | None:intergenic | 30.0% | |
| GTTGTCTAATGTGTAAAAGT+AGG | - | chr4_1:81620846-81620865 | None:intergenic | 30.0% | |
| !! | TGCACAGTTTAATTTGACAA+AGG | - | chr4_1:81620871-81620890 | None:intergenic | 30.0% |
| ACATATGTATGATAGCAACA+TGG | - | chr4_1:81620967-81620986 | None:intergenic | 30.0% | |
| ! | TAATTTTACTTTCTCGTGAC+AGG | + | chr4_1:81621033-81621052 | Msa0577320:intron | 30.0% |
| ! | AATTTTACTTTCTCGTGACA+GGG | + | chr4_1:81621034-81621053 | Msa0577320:intron | 30.0% |
| AACTCAACTCTAATCCAATA+TGG | + | chr4_1:81621184-81621203 | Msa0577320:intron | 30.0% | |
| TTGATATGGCAATACCAAAA+AGG | - | chr4_1:81621449-81621468 | None:intergenic | 30.0% | |
| CTCAAAATCAATCTCATCAT+GGG | - | chr4_1:81621531-81621550 | None:intergenic | 30.0% | |
| ACTCAAAATCAATCTCATCA+TGG | - | chr4_1:81621532-81621551 | None:intergenic | 30.0% | |
| !!! | TGAGATTGATTTTGAGTTCT+TGG | + | chr4_1:81621535-81621554 | Msa0577320:CDS | 30.0% |
| !!! | GAGATTGATTTTGAGTTCTT+GGG | + | chr4_1:81621536-81621555 | Msa0577320:CDS | 30.0% |
| CACACAAATATCTTTACTCA+AGG | + | chr4_1:81621587-81621606 | Msa0577320:CDS | 30.0% | |
| ACATTCTTGAATACCCTTAT+TGG | - | chr4_1:81621816-81621835 | None:intergenic | 30.0% | |
| !! | TGCTATAATGGTTAGCTTTA+TGG | + | chr4_1:81620151-81620170 | Msa0577320:CDS | 30.0% |
| !! | TATAATGGTTAGCTTTATGG+TGG | + | chr4_1:81620154-81620173 | Msa0577320:CDS | 30.0% |
| !! | AAGAGTACCAGAATTGAAAA+TGG | - | chr4_1:81620428-81620447 | None:intergenic | 30.0% |
| !! | GGTTATAATGATGGATGAAA+TGG | - | chr4_1:81620458-81620477 | None:intergenic | 30.0% |
| AGCATGTATATGATACAACA+AGG | - | chr4_1:81620479-81620498 | None:intergenic | 30.0% | |
| ATAAGCTCTTCAGAAATAGT+AGG | - | chr4_1:81620587-81620606 | None:intergenic | 30.0% | |
| !! | TAGGTCAATAATGGTCTTAT+TGG | - | chr4_1:81620827-81620846 | None:intergenic | 30.0% |
| GTGTAAAAGTAGGTCAATAA+TGG | - | chr4_1:81620836-81620855 | None:intergenic | 30.0% | |
| GTTGTCTAATGTGTAAAAGT+AGG | - | chr4_1:81620846-81620865 | None:intergenic | 30.0% | |
| !! | TGCACAGTTTAATTTGACAA+AGG | - | chr4_1:81620871-81620890 | None:intergenic | 30.0% |
| ACATATGTATGATAGCAACA+TGG | - | chr4_1:81620967-81620986 | None:intergenic | 30.0% | |
| ! | TAATTTTACTTTCTCGTGAC+AGG | + | chr4_1:81621033-81621052 | Msa0577320:intron | 30.0% |
| ! | AATTTTACTTTCTCGTGACA+GGG | + | chr4_1:81621034-81621053 | Msa0577320:intron | 30.0% |
| AACTCAACTCTAATCCAATA+TGG | + | chr4_1:81621184-81621203 | Msa0577320:intron | 30.0% | |
| TTGATATGGCAATACCAAAA+AGG | - | chr4_1:81621449-81621468 | None:intergenic | 30.0% | |
| CTCAAAATCAATCTCATCAT+GGG | - | chr4_1:81621531-81621550 | None:intergenic | 30.0% | |
| ACTCAAAATCAATCTCATCA+TGG | - | chr4_1:81621532-81621551 | None:intergenic | 30.0% | |
| !!! | TGAGATTGATTTTGAGTTCT+TGG | + | chr4_1:81621535-81621554 | Msa0577320:CDS | 30.0% |
| !!! | GAGATTGATTTTGAGTTCTT+GGG | + | chr4_1:81621536-81621555 | Msa0577320:CDS | 30.0% |
| CACACAAATATCTTTACTCA+AGG | + | chr4_1:81621587-81621606 | Msa0577320:CDS | 30.0% | |
| ACATTCTTGAATACCCTTAT+TGG | - | chr4_1:81621816-81621835 | None:intergenic | 30.0% | |
| ACCAAGACTTTGATCTAACA+TGG | + | chr4_1:81620198-81620217 | Msa0577320:CDS | 35.0% | |
| CCAAGACTTTGATCTAACAT+GGG | + | chr4_1:81620199-81620218 | Msa0577320:CDS | 35.0% | |
| CAAGACTTTGATCTAACATG+GGG | + | chr4_1:81620200-81620219 | Msa0577320:CDS | 35.0% | |
| AACCGTGCTAAGATATTCAA+TGG | + | chr4_1:81620227-81620246 | Msa0577320:CDS | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | - | chr4_1:81620232-81620251 | None:intergenic | 35.0% | |
| !! | TCAAAGAGAGAGTACCTATT+TGG | + | chr4_1:81620302-81620321 | Msa0577320:CDS | 35.0% |
| !! | CAAAGAGAGAGTACCTATTT+GGG | + | chr4_1:81620303-81620322 | Msa0577320:CDS | 35.0% |
| GCATATCAATTCTCCCAAAT+AGG | - | chr4_1:81620319-81620338 | None:intergenic | 35.0% | |
| ! | ATTTTACTTTCTCGTGACAG+GGG | + | chr4_1:81621035-81621054 | Msa0577320:intron | 35.0% |
| CACTTTAGATGTTTCGTTCT+AGG | - | chr4_1:81621237-81621256 | None:intergenic | 35.0% | |
| ! | CATCTAAAGTGTGATTGAGA+TGG | + | chr4_1:81621246-81621265 | Msa0577320:intron | 35.0% |
| TGATTGAGATGGTTTGATAG+TGG | + | chr4_1:81621257-81621276 | Msa0577320:intron | 35.0% | |
| ! | AACTCTATTAACGAGGTGTT+GGG | - | chr4_1:81621301-81621320 | None:intergenic | 35.0% |
| AAACTCTATTAACGAGGTGT+TGG | - | chr4_1:81621302-81621321 | None:intergenic | 35.0% | |
| GATGTCAAACTCTATTAACG+AGG | - | chr4_1:81621308-81621327 | None:intergenic | 35.0% | |
| !! | TTAACCAATATGGTGTTGTG+TGG | + | chr4_1:81621338-81621357 | Msa0577320:intron | 35.0% |
| !! | TAACCAATATGGTGTTGTGT+GGG | + | chr4_1:81621339-81621358 | Msa0577320:intron | 35.0% |
| ! | AAGGAAAGGGACTTTTCTTT+GGG | - | chr4_1:81621430-81621449 | None:intergenic | 35.0% |
| ! | AAAGGAAAGGGACTTTTCTT+TGG | - | chr4_1:81621431-81621450 | None:intergenic | 35.0% |
| ! | AGAAAAGTCCCTTTCCTTTT+TGG | + | chr4_1:81621432-81621451 | Msa0577320:intron | 35.0% |
| TGGCAATACCAAAAAGGAAA+GGG | - | chr4_1:81621443-81621462 | None:intergenic | 35.0% | |
| ATGGCAATACCAAAAAGGAA+AGG | - | chr4_1:81621444-81621463 | None:intergenic | 35.0% | |
| AAATCAATCTCATCATGGGT+TGG | - | chr4_1:81621527-81621546 | None:intergenic | 35.0% | |
| GAGAACAACAATTCTACCTT+TGG | + | chr4_1:81621621-81621640 | Msa0577320:CDS | 35.0% | |
| !! | TAAGTGTGGAAGTTTCTAGT+GGG | - | chr4_1:81621653-81621672 | None:intergenic | 35.0% |
| AGTGACTTACATGATGTGTT+GGG | - | chr4_1:81621693-81621712 | None:intergenic | 35.0% | |
| TAGTGACTTACATGATGTGT+TGG | - | chr4_1:81621694-81621713 | None:intergenic | 35.0% | |
| TGGATTTAACTGCAGATTCT+TGG | + | chr4_1:81621779-81621798 | Msa0577320:intron | 35.0% | |
| !! | TGGTTGATAACATGCCAATA+AGG | + | chr4_1:81621799-81621818 | Msa0577320:CDS | 35.0% |
| !! | GGTTGATAACATGCCAATAA+GGG | + | chr4_1:81621800-81621819 | Msa0577320:CDS | 35.0% |
| ! | ATTGGTTGGTTCTTTGGAAA+AGG | - | chr4_1:81621855-81621874 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | - | chr4_1:81621861-81621880 | None:intergenic | 35.0% |
| TGGAATAGATTCTCATTGGT+TGG | - | chr4_1:81621869-81621888 | None:intergenic | 35.0% | |
| TTACGGTAGTATGCTGTAAA+GGG | - | chr4_1:81621957-81621976 | None:intergenic | 35.0% | |
| ATTACGGTAGTATGCTGTAA+AGG | - | chr4_1:81621958-81621977 | None:intergenic | 35.0% | |
| AGCATACTACCGTAATTTCA+AGG | + | chr4_1:81621962-81621981 | Msa0577320:CDS | 35.0% | |
| GTTCAAATTCTGATGCTGAA+TGG | + | chr4_1:81622015-81622034 | Msa0577320:CDS | 35.0% | |
| ATAAATGCGCTTGATGCTTA+TGG | + | chr4_1:81622041-81622060 | Msa0577320:CDS | 35.0% | |
| ATGGTAGAAGAAGATTGAGA+TGG | + | chr4_1:81622060-81622079 | Msa0577320:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | + | chr4_1:81622061-81622080 | Msa0577320:CDS | 35.0% | |
| ACCAAGACTTTGATCTAACA+TGG | + | chr4_1:81620198-81620217 | Msa0577320:CDS | 35.0% | |
| CCAAGACTTTGATCTAACAT+GGG | + | chr4_1:81620199-81620218 | Msa0577320:CDS | 35.0% | |
| CAAGACTTTGATCTAACATG+GGG | + | chr4_1:81620200-81620219 | Msa0577320:CDS | 35.0% | |
| AACCGTGCTAAGATATTCAA+TGG | + | chr4_1:81620227-81620246 | Msa0577320:CDS | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | - | chr4_1:81620232-81620251 | None:intergenic | 35.0% | |
| !! | TCAAAGAGAGAGTACCTATT+TGG | + | chr4_1:81620302-81620321 | Msa0577320:CDS | 35.0% |
| !! | CAAAGAGAGAGTACCTATTT+GGG | + | chr4_1:81620303-81620322 | Msa0577320:CDS | 35.0% |
| GCATATCAATTCTCCCAAAT+AGG | - | chr4_1:81620319-81620338 | None:intergenic | 35.0% | |
| ! | ATTTTACTTTCTCGTGACAG+GGG | + | chr4_1:81621035-81621054 | Msa0577320:intron | 35.0% |
| CACTTTAGATGTTTCGTTCT+AGG | - | chr4_1:81621237-81621256 | None:intergenic | 35.0% | |
| ! | CATCTAAAGTGTGATTGAGA+TGG | + | chr4_1:81621246-81621265 | Msa0577320:intron | 35.0% |
| TGATTGAGATGGTTTGATAG+TGG | + | chr4_1:81621257-81621276 | Msa0577320:intron | 35.0% | |
| ! | AACTCTATTAACGAGGTGTT+GGG | - | chr4_1:81621301-81621320 | None:intergenic | 35.0% |
| AAACTCTATTAACGAGGTGT+TGG | - | chr4_1:81621302-81621321 | None:intergenic | 35.0% | |
| GATGTCAAACTCTATTAACG+AGG | - | chr4_1:81621308-81621327 | None:intergenic | 35.0% | |
| !! | TTAACCAATATGGTGTTGTG+TGG | + | chr4_1:81621338-81621357 | Msa0577320:intron | 35.0% |
| !! | TAACCAATATGGTGTTGTGT+GGG | + | chr4_1:81621339-81621358 | Msa0577320:intron | 35.0% |
| ! | AAGGAAAGGGACTTTTCTTT+GGG | - | chr4_1:81621430-81621449 | None:intergenic | 35.0% |
| ! | AAAGGAAAGGGACTTTTCTT+TGG | - | chr4_1:81621431-81621450 | None:intergenic | 35.0% |
| ! | AGAAAAGTCCCTTTCCTTTT+TGG | + | chr4_1:81621432-81621451 | Msa0577320:intron | 35.0% |
| TGGCAATACCAAAAAGGAAA+GGG | - | chr4_1:81621443-81621462 | None:intergenic | 35.0% | |
| ATGGCAATACCAAAAAGGAA+AGG | - | chr4_1:81621444-81621463 | None:intergenic | 35.0% | |
| AAATCAATCTCATCATGGGT+TGG | - | chr4_1:81621527-81621546 | None:intergenic | 35.0% | |
| GAGAACAACAATTCTACCTT+TGG | + | chr4_1:81621621-81621640 | Msa0577320:CDS | 35.0% | |
| !! | TAAGTGTGGAAGTTTCTAGT+GGG | - | chr4_1:81621653-81621672 | None:intergenic | 35.0% |
| AGTGACTTACATGATGTGTT+GGG | - | chr4_1:81621693-81621712 | None:intergenic | 35.0% | |
| TAGTGACTTACATGATGTGT+TGG | - | chr4_1:81621694-81621713 | None:intergenic | 35.0% | |
| TGGATTTAACTGCAGATTCT+TGG | + | chr4_1:81621779-81621798 | Msa0577320:intron | 35.0% | |
| !! | TGGTTGATAACATGCCAATA+AGG | + | chr4_1:81621799-81621818 | Msa0577320:CDS | 35.0% |
| !! | GGTTGATAACATGCCAATAA+GGG | + | chr4_1:81621800-81621819 | Msa0577320:CDS | 35.0% |
| ! | ATTGGTTGGTTCTTTGGAAA+AGG | - | chr4_1:81621855-81621874 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | - | chr4_1:81621861-81621880 | None:intergenic | 35.0% |
| TGGAATAGATTCTCATTGGT+TGG | - | chr4_1:81621869-81621888 | None:intergenic | 35.0% | |
| TTACGGTAGTATGCTGTAAA+GGG | - | chr4_1:81621957-81621976 | None:intergenic | 35.0% | |
| ATTACGGTAGTATGCTGTAA+AGG | - | chr4_1:81621958-81621977 | None:intergenic | 35.0% | |
| AGCATACTACCGTAATTTCA+AGG | + | chr4_1:81621962-81621981 | Msa0577320:CDS | 35.0% | |
| GTTCAAATTCTGATGCTGAA+TGG | + | chr4_1:81622015-81622034 | Msa0577320:CDS | 35.0% | |
| ATAAATGCGCTTGATGCTTA+TGG | + | chr4_1:81622041-81622060 | Msa0577320:CDS | 35.0% | |
| ATGGTAGAAGAAGATTGAGA+TGG | + | chr4_1:81622060-81622079 | Msa0577320:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | + | chr4_1:81622061-81622080 | Msa0577320:CDS | 35.0% | |
| CACATGAAACTCATTGTGAG+TGG | - | chr4_1:81620120-81620139 | None:intergenic | 40.0% | |
| CCCATGTTAGATCAAAGTCT+TGG | - | chr4_1:81620202-81620221 | None:intergenic | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | + | chr4_1:81620230-81620249 | Msa0577320:CDS | 40.0% | |
| !! | AAGTGTGGAAGTTTCTAGTG+GGG | - | chr4_1:81621652-81621671 | None:intergenic | 40.0% |
| ! | GTAAGTGTGGAAGTTTCTAG+TGG | - | chr4_1:81621654-81621673 | None:intergenic | 40.0% |
| TCCACACTTACTCCATCATT+TGG | + | chr4_1:81621663-81621682 | Msa0577320:CDS | 40.0% | |
| ! | TCCAAATGATGGAGTAAGTG+TGG | - | chr4_1:81621667-81621686 | None:intergenic | 40.0% |
| GTGACTTACATGATGTGTTG+GGG | - | chr4_1:81621692-81621711 | None:intergenic | 40.0% | |
| AGGCTGGAATAGATTCTCAT+TGG | - | chr4_1:81621873-81621892 | None:intergenic | 40.0% | |
| !! | GTGGATTGGTGAAAACTGAT+TGG | + | chr4_1:81621922-81621941 | Msa0577320:CDS | 40.0% |
| ! | ACTGAGTGGCCTTGAAATTA+CGG | - | chr4_1:81621974-81621993 | None:intergenic | 40.0% |
| TAGCCACTAGGCACTTTATA+AGG | + | chr4_1:81622157-81622176 | Msa0577320:exon | 40.0% | |
| ! | GAACCTTATAAAGTGCCTAG+TGG | - | chr4_1:81622163-81622182 | None:intergenic | 40.0% |
| CACATGAAACTCATTGTGAG+TGG | - | chr4_1:81620120-81620139 | None:intergenic | 40.0% | |
| CCCATGTTAGATCAAAGTCT+TGG | - | chr4_1:81620202-81620221 | None:intergenic | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | + | chr4_1:81620230-81620249 | Msa0577320:CDS | 40.0% | |
| !! | AAGTGTGGAAGTTTCTAGTG+GGG | - | chr4_1:81621652-81621671 | None:intergenic | 40.0% |
| ! | GTAAGTGTGGAAGTTTCTAG+TGG | - | chr4_1:81621654-81621673 | None:intergenic | 40.0% |
| TCCACACTTACTCCATCATT+TGG | + | chr4_1:81621663-81621682 | Msa0577320:CDS | 40.0% | |
| ! | TCCAAATGATGGAGTAAGTG+TGG | - | chr4_1:81621667-81621686 | None:intergenic | 40.0% |
| GTGACTTACATGATGTGTTG+GGG | - | chr4_1:81621692-81621711 | None:intergenic | 40.0% | |
| AGGCTGGAATAGATTCTCAT+TGG | - | chr4_1:81621873-81621892 | None:intergenic | 40.0% | |
| !! | GTGGATTGGTGAAAACTGAT+TGG | + | chr4_1:81621922-81621941 | Msa0577320:CDS | 40.0% |
| ! | ACTGAGTGGCCTTGAAATTA+CGG | - | chr4_1:81621974-81621993 | None:intergenic | 40.0% |
| TAGCCACTAGGCACTTTATA+AGG | + | chr4_1:81622157-81622176 | Msa0577320:exon | 40.0% | |
| ! | GAACCTTATAAAGTGCCTAG+TGG | - | chr4_1:81622163-81622182 | None:intergenic | 40.0% |
| TTTATGGTGGCTACTTGTGC+TGG | + | chr4_1:81620167-81620186 | Msa0577320:CDS | 45.0% | |
| CTTTCCCTTGACAAAGTCTC+TGG | + | chr4_1:81620266-81620285 | Msa0577320:CDS | 45.0% | |
| AGAGCCAGAGACTTTGTCAA+GGG | - | chr4_1:81620273-81620292 | None:intergenic | 45.0% | |
| !! | ATGCAGCTTAAGCTTGTTGC+TGG | + | chr4_1:81620335-81620354 | Msa0577320:CDS | 45.0% |
| AGTCCCACACAACACCATAT+TGG | - | chr4_1:81621345-81621364 | None:intergenic | 45.0% | |
| GAGTTCTTGGGAAACACAAG+TGG | + | chr4_1:81621548-81621567 | Msa0577320:CDS | 45.0% | |
| TTCTAGTGGGGTCAAACCAA+AGG | - | chr4_1:81621640-81621659 | None:intergenic | 45.0% | |
| TGAGAATCTATTCCAGCCTG+TGG | + | chr4_1:81621874-81621893 | Msa0577320:CDS | 45.0% | |
| CCTGTGGAATGCTGATGATT+GGG | + | chr4_1:81621890-81621909 | Msa0577320:CDS | 45.0% | |
| TTTCACCAATCCACCTCTTG+TGG | - | chr4_1:81621916-81621935 | None:intergenic | 45.0% | |
| !! | GTATGCTGTAAAGGGTGCTT+TGG | - | chr4_1:81621949-81621968 | None:intergenic | 45.0% |
| ! | AGACTTGGTTGAGAACTGAG+TGG | - | chr4_1:81621988-81622007 | None:intergenic | 45.0% |
| GATCTTAAGCGATTCCCACA+AGG | + | chr4_1:81622119-81622138 | Msa0577320:CDS | 45.0% | |
| ACTCAACAGGAACACCTTGT+GGG | - | chr4_1:81622136-81622155 | None:intergenic | 45.0% | |
| TTTATGGTGGCTACTTGTGC+TGG | + | chr4_1:81620167-81620186 | Msa0577320:CDS | 45.0% | |
| CTTTCCCTTGACAAAGTCTC+TGG | + | chr4_1:81620266-81620285 | Msa0577320:CDS | 45.0% | |
| AGAGCCAGAGACTTTGTCAA+GGG | - | chr4_1:81620273-81620292 | None:intergenic | 45.0% | |
| !! | ATGCAGCTTAAGCTTGTTGC+TGG | + | chr4_1:81620335-81620354 | Msa0577320:CDS | 45.0% |
| AGTCCCACACAACACCATAT+TGG | - | chr4_1:81621345-81621364 | None:intergenic | 45.0% | |
| GAGTTCTTGGGAAACACAAG+TGG | + | chr4_1:81621548-81621567 | Msa0577320:CDS | 45.0% | |
| TTCTAGTGGGGTCAAACCAA+AGG | - | chr4_1:81621640-81621659 | None:intergenic | 45.0% | |
| TGAGAATCTATTCCAGCCTG+TGG | + | chr4_1:81621874-81621893 | Msa0577320:CDS | 45.0% | |
| CCTGTGGAATGCTGATGATT+GGG | + | chr4_1:81621890-81621909 | Msa0577320:CDS | 45.0% | |
| TTTCACCAATCCACCTCTTG+TGG | - | chr4_1:81621916-81621935 | None:intergenic | 45.0% | |
| !! | GTATGCTGTAAAGGGTGCTT+TGG | - | chr4_1:81621949-81621968 | None:intergenic | 45.0% |
| ! | AGACTTGGTTGAGAACTGAG+TGG | - | chr4_1:81621988-81622007 | None:intergenic | 45.0% |
| GATCTTAAGCGATTCCCACA+AGG | + | chr4_1:81622119-81622138 | Msa0577320:CDS | 45.0% | |
| ACTCAACAGGAACACCTTGT+GGG | - | chr4_1:81622136-81622155 | None:intergenic | 45.0% | |
| CAGAGCCAGAGACTTTGTCA+AGG | - | chr4_1:81620274-81620293 | None:intergenic | 50.0% | |
| ! | CTTGACAAAGTCTCTGGCTC+TGG | + | chr4_1:81620272-81620291 | Msa0577320:CDS | 50.0% |
| TGGTACAGCTGTCATCCCAA+GGG | + | chr4_1:81621501-81621520 | Msa0577320:intron | 50.0% | |
| GTGTTGGGGCTTCCAAATGA+TGG | - | chr4_1:81621678-81621697 | None:intergenic | 50.0% | |
| ATCATCAGCATTCCACAGGC+TGG | - | chr4_1:81621889-81621908 | None:intergenic | 50.0% | |
| GCCTGTGGAATGCTGATGAT+TGG | + | chr4_1:81621889-81621908 | Msa0577320:CDS | 50.0% | |
| CCCAATCATCAGCATTCCAC+AGG | - | chr4_1:81621893-81621912 | None:intergenic | 50.0% | |
| CACTCAACAGGAACACCTTG+TGG | - | chr4_1:81622137-81622156 | None:intergenic | 50.0% | |
| TCCTGTTGAGTGTAGCCACT+AGG | + | chr4_1:81622145-81622164 | Msa0577320:CDS | 50.0% | |
| CAGAGCCAGAGACTTTGTCA+AGG | - | chr4_1:81620274-81620293 | None:intergenic | 50.0% | |
| ! | CTTGACAAAGTCTCTGGCTC+TGG | + | chr4_1:81620272-81620291 | Msa0577320:CDS | 50.0% |
| TGGTACAGCTGTCATCCCAA+GGG | + | chr4_1:81621501-81621520 | Msa0577320:intron | 50.0% | |
| GTGTTGGGGCTTCCAAATGA+TGG | - | chr4_1:81621678-81621697 | None:intergenic | 50.0% | |
| ATCATCAGCATTCCACAGGC+TGG | - | chr4_1:81621889-81621908 | None:intergenic | 50.0% | |
| GCCTGTGGAATGCTGATGAT+TGG | + | chr4_1:81621889-81621908 | Msa0577320:CDS | 50.0% | |
| CCCAATCATCAGCATTCCAC+AGG | - | chr4_1:81621893-81621912 | None:intergenic | 50.0% | |
| CACTCAACAGGAACACCTTG+TGG | - | chr4_1:81622137-81622156 | None:intergenic | 50.0% | |
| TCCTGTTGAGTGTAGCCACT+AGG | + | chr4_1:81622145-81622164 | Msa0577320:CDS | 50.0% | |
| CTTGTTGCTGGCAACTCAGC+TGG | + | chr4_1:81620347-81620366 | Msa0577320:CDS | 55.0% | |
| ! | GGTGTTGTGTGGGACTCTCT+TGG | + | chr4_1:81621349-81621368 | Msa0577320:intron | 55.0% |
| GTGGTACAGCTGTCATCCCA+AGG | + | chr4_1:81621500-81621519 | Msa0577320:intron | 55.0% | |
| !! | CTCATCATGGGTTGGCCCTT+GGG | - | chr4_1:81621519-81621538 | None:intergenic | 55.0% |
| !! | TCTCATCATGGGTTGGCCCT+TGG | - | chr4_1:81621520-81621539 | None:intergenic | 55.0% |
| GCTGATGATTGGGCCACAAG+AGG | + | chr4_1:81621900-81621919 | Msa0577320:CDS | 55.0% | |
| GATGATTGGGCCACAAGAGG+TGG | + | chr4_1:81621903-81621922 | Msa0577320:CDS | 55.0% | |
| TTGGGCCACAAGAGGTGGAT+TGG | + | chr4_1:81621908-81621927 | Msa0577320:CDS | 55.0% | |
| GCCTAGTGGCTACACTCAAC+AGG | - | chr4_1:81622149-81622168 | None:intergenic | 55.0% | |
| CTTGTTGCTGGCAACTCAGC+TGG | + | chr4_1:81620347-81620366 | Msa0577320:CDS | 55.0% | |
| ! | GGTGTTGTGTGGGACTCTCT+TGG | + | chr4_1:81621349-81621368 | Msa0577320:intron | 55.0% |
| GTGGTACAGCTGTCATCCCA+AGG | + | chr4_1:81621500-81621519 | Msa0577320:intron | 55.0% | |
| !! | CTCATCATGGGTTGGCCCTT+GGG | - | chr4_1:81621519-81621538 | None:intergenic | 55.0% |
| !! | TCTCATCATGGGTTGGCCCT+TGG | - | chr4_1:81621520-81621539 | None:intergenic | 55.0% |
| GCTGATGATTGGGCCACAAG+AGG | + | chr4_1:81621900-81621919 | Msa0577320:CDS | 55.0% | |
| GATGATTGGGCCACAAGAGG+TGG | + | chr4_1:81621903-81621922 | Msa0577320:CDS | 55.0% | |
| TTGGGCCACAAGAGGTGGAT+TGG | + | chr4_1:81621908-81621927 | Msa0577320:CDS | 55.0% | |
| GCCTAGTGGCTACACTCAAC+AGG | - | chr4_1:81622149-81622168 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 81620104 | 81622369 | 81620104 | ID=Msa0577320;Name=Msa0577320 |
| chr4_1 | mRNA | 81620104 | 81622369 | 81620104 | ID=Msa0577320-mRNA-1;Parent=Msa0577320;Name=Msa0577320-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.5|0.66|1|1|1|3|203|300 |
| chr4_1 | exon | 81620104 | 81620439 | 81620104 | ID=Msa0577320-mRNA-1:exon:29379;Parent=Msa0577320-mRNA-1 |
| chr4_1 | exon | 81621509 | 81621702 | 81621509 | ID=Msa0577320-mRNA-1:exon:29380;Parent=Msa0577320-mRNA-1 |
| chr4_1 | exon | 81621794 | 81622369 | 81621794 | ID=Msa0577320-mRNA-1:exon:29381;Parent=Msa0577320-mRNA-1 |
| chr4_1 | CDS | 81620104 | 81620439 | 81620104 | ID=Msa0577320-mRNA-1:cds;Parent=Msa0577320-mRNA-1 |
| chr4_1 | CDS | 81621509 | 81621702 | 81621509 | ID=Msa0577320-mRNA-1:cds;Parent=Msa0577320-mRNA-1 |
| chr4_1 | CDS | 81621794 | 81622166 | 81621794 | ID=Msa0577320-mRNA-1:cds;Parent=Msa0577320-mRNA-1 |
| chr4_1 | three_prime_UTR | 81622167 | 81622369 | 81622167 | ID=Msa0577320-mRNA-1:three_prime_utr;Parent=Msa0577320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
