Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570270 | XP_013446935.1 | 77.169 | 219 | 8 | 1 | 1 | 177 | 1 | 219 | 8.58e-116 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570270 | sp|Q67YC9|Y4141_ARATH | 44.633 | 177 | 55 | 2 | 9 | 143 | 8 | 183 | 1.16e-49 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570270 | A0A072TU64 | 77.169 | 219 | 8 | 1 | 1 | 177 | 1 | 219 | 4.10e-116 | 337 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070740 | Msa0570270 | 0.815925 | 7.199346e-52 | -8.615850e-47 |
| Msa0568120 | Msa0570270 | 0.808658 | 2.779362e-50 | -8.615850e-47 |
| Msa0568230 | Msa0570270 | 0.809949 | 1.469414e-50 | -8.615850e-47 |
| Msa0570250 | Msa0570270 | 0.805296 | 1.429299e-49 | -8.615850e-47 |
| Msa0570270 | Msa0570340 | 0.822743 | 2.011952e-53 | -8.615850e-47 |
| Msa0570270 | Msa0570490 | 0.811505 | 6.771781e-51 | -8.615850e-47 |
| Msa0570270 | Msa0570770 | 0.849821 | 2.527681e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570270 | MtrunA17_Chr8g0385631 | 77.169 | 219 | 8 | 1 | 1 | 177 | 1 | 219 | 7.90e-120 | 337 |
| Msa0570270 | MtrunA17_Chr8g0385601 | 63.063 | 222 | 38 | 2 | 1 | 178 | 1 | 222 | 8.69e-94 | 271 |
| Msa0570270 | MtrunA17_Chr3g0131541 | 50.000 | 188 | 45 | 4 | 1 | 143 | 1 | 184 | 2.03e-55 | 174 |
| Msa0570270 | MtrunA17_Chr8g0385611 | 73.913 | 115 | 30 | 0 | 1 | 115 | 1 | 115 | 2.60e-53 | 167 |
| Msa0570270 | MtrunA17_Chr3g0131551 | 47.619 | 189 | 54 | 2 | 1 | 144 | 7 | 195 | 4.93e-53 | 168 |
| Msa0570270 | MtrunA17_Chr8g0385621 | 75.000 | 56 | 11 | 2 | 116 | 169 | 1 | 55 | 1.03e-21 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570270 | AT3G23760.1 | 50.000 | 168 | 41 | 2 | 22 | 147 | 26 | 192 | 4.04e-52 | 165 |
| Msa0570270 | AT4G14100.1 | 44.633 | 177 | 55 | 2 | 9 | 143 | 8 | 183 | 1.18e-50 | 162 |
Find 53 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGCCACGGCGTTGGAAT+TGG | 0.214822 | 4_1:-72359156 | None:intergenic |
| CTTCGTCCCAATTGGCTTGA+TGG | 0.251154 | 4_1:+72359393 | Msa0570270:CDS |
| AATGTTGAAGTTGCGTCCTT+TGG | 0.308667 | 4_1:-72359250 | None:intergenic |
| AGCAGCTTCTAAATCTAATA+AGG | 0.316448 | 4_1:-72360101 | None:intergenic |
| TGAGAACACCAAGCTGATAT+TGG | 0.332979 | 4_1:-72359275 | None:intergenic |
| CCGGCCACGGCGTTGGAATT+GGG | 0.346904 | 4_1:-72359155 | None:intergenic |
| TGCCGCTTCTGTTTATGAAT+AGG | 0.369449 | 4_1:-72359194 | None:intergenic |
| TATAAACCGTATGCTATTGC+TGG | 0.388005 | 4_1:-72360174 | None:intergenic |
| TGGGTATTCTTCGTCCCAAT+TGG | 0.401532 | 4_1:+72359385 | Msa0570270:CDS |
| TTCTCAAATACGACCTTGAA+TGG | 0.403268 | 4_1:+72359292 | Msa0570270:CDS |
| ATGTTGAAGTTGCGTCCTTT+GGG | 0.414721 | 4_1:-72359249 | None:intergenic |
| GTTAGCACCATCAAGCCAAT+TGG | 0.414933 | 4_1:-72359400 | None:intergenic |
| AGGACTGAATGAAACTGTTC+CGG | 0.452659 | 4_1:-72359174 | None:intergenic |
| AGGTGCCATTGTTCCATTCA+AGG | 0.452905 | 4_1:-72359305 | None:intergenic |
| CCCAATTCCAACGCCGTGGC+CGG | 0.458323 | 4_1:+72359155 | Msa0570270:CDS |
| AACTGTTCCGGCCACGGCGT+TGG | 0.477557 | 4_1:-72359162 | None:intergenic |
| AACCAAAGATACAGAAAAGA+AGG | 0.480532 | 4_1:+72360071 | Msa0570270:CDS |
| ATTTGAGGTTGGTGCAGTGC+TGG | 0.481969 | 4_1:+72359997 | Msa0570270:CDS |
| TCTCAAGACCACAGAGTAGT+AGG | 0.485162 | 4_1:-72362064 | None:intergenic |
| TTTGTCACAGCTAGTGCATA+GGG | 0.487513 | 4_1:+72362099 | Msa0570270:three_prime_UTR |
| AAACAAACAAATGCGTTCTT+CGG | 0.488717 | 4_1:-72359085 | None:intergenic |
| TTAGAAGCTGCTGTTGGTGG+TGG | 0.492112 | 4_1:+72360112 | Msa0570270:CDS |
| TAGCTGTTGGAAGTTAAGGC+AGG | 0.514518 | 4_1:+72362009 | Msa0570270:three_prime_UTR |
| TTAGCACCATCAAGCCAATT+GGG | 0.514645 | 4_1:-72359399 | None:intergenic |
| AAACCGACCTATGGTACGAT+TGG | 0.517325 | 4_1:+72359226 | Msa0570270:CDS |
| TGCTCATGTGATGACATTTG+AGG | 0.519002 | 4_1:+72359982 | Msa0570270:CDS |
| AACATTATCCAATATCAGCT+TGG | 0.519327 | 4_1:+72359267 | Msa0570270:CDS |
| GATTTAGAAGCTGCTGTTGG+TGG | 0.522659 | 4_1:+72360109 | Msa0570270:CDS |
| GAATGAAACTGTTCCGGCCA+CGG | 0.527864 | 4_1:-72359168 | None:intergenic |
| GGAATAAAATTAAACTCTGA+TGG | 0.530319 | 4_1:+72362030 | Msa0570270:three_prime_UTR |
| CTATGGTACGATTGGCCCAA+AGG | 0.539339 | 4_1:+72359234 | Msa0570270:CDS |
| CTTTGGGCCAATCGTACCAT+AGG | 0.551684 | 4_1:-72359233 | None:intergenic |
| AATGCGTTCTTCGGTGGCAG+AGG | 0.553681 | 4_1:-72359076 | None:intergenic |
| AGGGTCGAGAGTATAGAGAA+AGG | 0.556535 | 4_1:-72359328 | None:intergenic |
| GCTGGACGATGAGCATTGGC+AGG | 0.560605 | 4_1:+72360015 | Msa0570270:CDS |
| ATAAACCGTATGCTATTGCT+GGG | 0.566960 | 4_1:-72360173 | None:intergenic |
| TTAGATTTAGAAGCTGCTGT+TGG | 0.576944 | 4_1:+72360106 | Msa0570270:CDS |
| CATGTGATGACATTTGAGGT+TGG | 0.580197 | 4_1:+72359986 | Msa0570270:CDS |
| ATAACACACATAATAAGAGA+TGG | 0.589450 | 4_1:-72362171 | None:intergenic |
| GGGCCAATCGTACCATAGGT+CGG | 0.598624 | 4_1:-72359229 | None:intergenic |
| GTCCTATTCATAAACAGAAG+CGG | 0.600560 | 4_1:+72359192 | Msa0570270:CDS |
| GCCTCACTAAAACAATAGAC+AGG | 0.605065 | 4_1:-72360040 | None:intergenic |
| AGCCACCCAGCAATAGCATA+CGG | 0.606199 | 4_1:+72360168 | Msa0570270:exon |
| TACGACCTTGAATGGAACAA+TGG | 0.609959 | 4_1:+72359300 | Msa0570270:CDS |
| CAGTGCTGGACGATGAGCAT+TGG | 0.613309 | 4_1:+72360011 | Msa0570270:CDS |
| CAAACAAATGCGTTCTTCGG+TGG | 0.617342 | 4_1:-72359082 | None:intergenic |
| ACACACATAATAAGAGATGG+AGG | 0.641125 | 4_1:-72362168 | None:intergenic |
| GCATACGGTTTATAATTGTG+AGG | 0.641918 | 4_1:+72360183 | Msa0570270:three_prime_UTR |
| AACCGTATGCTATTGCTGGG+TGG | 0.662984 | 4_1:-72360170 | None:intergenic |
| CACACATAATAAGAGATGGA+GGG | 0.669938 | 4_1:-72362167 | None:intergenic |
| ACGACCCAATTCCAACGCCG+TGG | 0.671513 | 4_1:+72359151 | Msa0570270:CDS |
| GTCGAGAGTATAGAGAAAGG+AGG | 0.699354 | 4_1:-72359325 | None:intergenic |
| ACACTCAGCCTACTACTCTG+TGG | 0.725490 | 4_1:+72362056 | Msa0570270:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTTAAATAAATGATTT+TGG | - | chr4_1:72361915-72361934 | None:intergenic | 10.0% |
| !! | AAAAACAAAACATAAAACAA+GGG | - | chr4_1:72361317-72361336 | None:intergenic | 15.0% |
| !! | AAAAAACAAAACATAAAACA+AGG | - | chr4_1:72361318-72361337 | None:intergenic | 15.0% |
| !! | TTGATTTAAGTATGTATTTA+TGG | + | chr4_1:72361353-72361372 | Msa0570270:intron | 15.0% |
| !! | ACACTACAATTTATAAAATA+TGG | - | chr4_1:72361962-72361981 | None:intergenic | 15.0% |
| !!! | ATACTTTTCTTTGTAATGTT+TGG | + | chr4_1:72359445-72359464 | Msa0570270:intron | 20.0% |
| !!! | TACTTTTCTTTGTAATGTTT+GGG | + | chr4_1:72359446-72359465 | Msa0570270:intron | 20.0% |
| !!! | TGATTTTATTTGGTATTATG+AGG | + | chr4_1:72359476-72359495 | Msa0570270:intron | 20.0% |
| !!! | ATAAAAGCATAATAACTAAC+CGG | - | chr4_1:72359541-72359560 | None:intergenic | 20.0% |
| !!! | TATATGTACTTTGTTTTGTT+GGG | + | chr4_1:72360237-72360256 | Msa0570270:intron | 20.0% |
| !!! | ATTAAAAGAGACATGTTTTT+GGG | - | chr4_1:72360659-72360678 | None:intergenic | 20.0% |
| !!! | AATTAAAAGAGACATGTTTT+TGG | - | chr4_1:72360660-72360679 | None:intergenic | 20.0% |
| !! | TTCATTGTTAACTCATTTAT+TGG | + | chr4_1:72361065-72361084 | Msa0570270:intron | 20.0% |
| !!! | ATGGATATAATTTAAGATTG+TGG | + | chr4_1:72361536-72361555 | Msa0570270:intron | 20.0% |
| !! | TTTTGCAAGTGTGATTAAAA+GGG | - | chr4_1:72359350-72359369 | None:intergenic | 25.0% |
| !! | TTTTTGCAAGTGTGATTAAA+AGG | - | chr4_1:72359351-72359370 | None:intergenic | 25.0% |
| !!! | AAAAAGCTTCATTTTGATGT+GGG | + | chr4_1:72359366-72359385 | Msa0570270:CDS | 25.0% |
| ! | TAACATAGTACATCAGTTAA+AGG | - | chr4_1:72359565-72359584 | None:intergenic | 25.0% |
| ! | CTACTAAATGATTAATTGCT+AGG | + | chr4_1:72359859-72359878 | Msa0570270:intron | 25.0% |
| !!! | CTATATGTACTTTGTTTTGT+TGG | + | chr4_1:72360236-72360255 | Msa0570270:intron | 25.0% |
| !!! | CTTAATAGAAGCTTTGTTTT+TGG | + | chr4_1:72360282-72360301 | Msa0570270:intron | 25.0% |
| ! | AGACATAAAACATGCATATT+TGG | - | chr4_1:72360318-72360337 | None:intergenic | 25.0% |
| ! | ATCTTCTAATAGAATCTTGT+TGG | + | chr4_1:72360346-72360365 | Msa0570270:intron | 25.0% |
| !!! | TTAAAAGAGACATGTTTTTG+GGG | - | chr4_1:72360658-72360677 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTGTGTCCATTTT+TGG | + | chr4_1:72360740-72360759 | Msa0570270:intron | 25.0% |
| ! | GAGATCAATGCATAAATATA+TGG | - | chr4_1:72360900-72360919 | None:intergenic | 25.0% |
| !!! | TTGTGTTGCTCATTTTTTTT+TGG | + | chr4_1:72361645-72361664 | Msa0570270:intron | 25.0% |
| ! | CACAGTTTATTCTAGTAATT+TGG | + | chr4_1:72361702-72361721 | Msa0570270:intron | 25.0% |
| ! | ATTCTAGTAATTTGGTTGTA+CGG | + | chr4_1:72361710-72361729 | Msa0570270:intron | 25.0% |
| !!! | GTGATATCAATATTTGGTTT+TGG | + | chr4_1:72361880-72361899 | Msa0570270:intron | 25.0% |
| ! | AAATTGTAGTGTTTATTGCA+TGG | + | chr4_1:72361970-72361989 | Msa0570270:intron | 25.0% |
| ! | GGAATAAAATTAAACTCTGA+TGG | + | chr4_1:72362030-72362049 | Msa0570270:three_prime_UTR | 25.0% |
| ! | ATAACACACATAATAAGAGA+TGG | - | chr4_1:72362174-72362193 | None:intergenic | 25.0% |
| AAACAAACAAATGCGTTCTT+CGG | - | chr4_1:72359088-72359107 | None:intergenic | 30.0% | |
| AACATTATCCAATATCAGCT+TGG | + | chr4_1:72359267-72359286 | Msa0570270:CDS | 30.0% | |
| !! | CAAAAAGCTTCATTTTGATG+TGG | + | chr4_1:72359365-72359384 | Msa0570270:CDS | 30.0% |
| !! | GGGAGAAAGTTGATTTTATT+TGG | + | chr4_1:72359466-72359485 | Msa0570270:intron | 30.0% |
| TGAGTGTAATTAAATGTGTC+AGG | + | chr4_1:72359650-72359669 | Msa0570270:intron | 30.0% | |
| CATGTACTTTCTTCTTCATA+AGG | - | chr4_1:72359736-72359755 | None:intergenic | 30.0% | |
| !! | TTAGTTGTGTTGATAGTGAT+TGG | + | chr4_1:72359915-72359934 | Msa0570270:intron | 30.0% |
| AAGCCTGATATATGATATGA+TGG | + | chr4_1:72359939-72359958 | Msa0570270:intron | 30.0% | |
| CAACCATCATATCATATATC+AGG | - | chr4_1:72359945-72359964 | None:intergenic | 30.0% | |
| CTGATATATGATATGATGGT+TGG | + | chr4_1:72359943-72359962 | Msa0570270:intron | 30.0% | |
| AACCAAAGATACAGAAAAGA+AGG | + | chr4_1:72360071-72360090 | Msa0570270:CDS | 30.0% | |
| AGCAGCTTCTAAATCTAATA+AGG | - | chr4_1:72360104-72360123 | None:intergenic | 30.0% | |
| TTTCTTGCTTATAAAGCTTG+AGG | + | chr4_1:72360422-72360441 | Msa0570270:intron | 30.0% | |
| TTCTTGCTTATAAAGCTTGA+GGG | + | chr4_1:72360423-72360442 | Msa0570270:intron | 30.0% | |
| ATACAGACACACTTAAAACT+CGG | - | chr4_1:72360576-72360595 | None:intergenic | 30.0% | |
| ACTTAAAGTTGAAACATGCT+TGG | - | chr4_1:72360721-72360740 | None:intergenic | 30.0% | |
| !!! | TTTTCCTACTGATTTCTACA+AGG | - | chr4_1:72360783-72360802 | None:intergenic | 30.0% |
| CATTAACTGCTATGATAGAA+TGG | + | chr4_1:72360817-72360836 | Msa0570270:intron | 30.0% | |
| CTATTTGCAATCATCTATTG+CGG | - | chr4_1:72360875-72360894 | None:intergenic | 30.0% | |
| ! | TCAAATTAAATCCCTTTTGG+CGG | - | chr4_1:72361393-72361412 | None:intergenic | 30.0% |
| ! | CCATCAAATTAAATCCCTTT+TGG | - | chr4_1:72361396-72361415 | None:intergenic | 30.0% |
| !! | CCAAAAGGGATTTAATTTGA+TGG | + | chr4_1:72361393-72361412 | Msa0570270:intron | 30.0% |
| AGCTAAAGATAAATAGCTTC+CGG | + | chr4_1:72361435-72361454 | Msa0570270:intron | 30.0% | |
| ATCATATGTTTGGATTCTAC+GGG | - | chr4_1:72361510-72361529 | None:intergenic | 30.0% | |
| GATCATATGTTTGGATTCTA+CGG | - | chr4_1:72361511-72361530 | None:intergenic | 30.0% | |
| CCATTTACTGATCATATGTT+TGG | - | chr4_1:72361520-72361539 | None:intergenic | 30.0% | |
| CCAAACATATGATCAGTAAA+TGG | + | chr4_1:72361517-72361536 | Msa0570270:intron | 30.0% | |
| ATTCTTCTACGTATGACAAA+AGG | - | chr4_1:72361574-72361593 | None:intergenic | 30.0% | |
| !!! | TGCTCATTTTTTTTTGGCTT+AGG | + | chr4_1:72361651-72361670 | Msa0570270:intron | 30.0% |
| !!! | GCTCATTTTTTTTTGGCTTA+GGG | + | chr4_1:72361652-72361671 | Msa0570270:intron | 30.0% |
| ! | GCTATGTAAAAGGCTTTTAA+GGG | - | chr4_1:72361790-72361809 | None:intergenic | 30.0% |
| ACATATTGTGGCTATGTAAA+AGG | - | chr4_1:72361800-72361819 | None:intergenic | 30.0% | |
| CTGTCTGTGATATCAATATT+TGG | + | chr4_1:72361874-72361893 | Msa0570270:intron | 30.0% | |
| !! | TTTTGGTTGATGTTGAGAGA+TGG | - | chr4_1:72359131-72359150 | None:intergenic | 35.0% |
| GTCCTATTCATAAACAGAAG+CGG | + | chr4_1:72359192-72359211 | Msa0570270:CDS | 35.0% | |
| ATCTTCAAAAAACCGACCTA+TGG | + | chr4_1:72359217-72359236 | Msa0570270:CDS | 35.0% | |
| TTCTCAAATACGACCTTGAA+TGG | + | chr4_1:72359292-72359311 | Msa0570270:CDS | 35.0% | |
| !! | CTTGATGGTGCTAACTATTT+GGG | + | chr4_1:72359408-72359427 | Msa0570270:intron | 35.0% |
| TCACTAAAAGACCTGTTAAG+TGG | + | chr4_1:72359505-72359524 | Msa0570270:intron | 35.0% | |
| !!! | TCCTGTCTATTGTTTTAGTG+AGG | + | chr4_1:72360039-72360058 | Msa0570270:CDS | 35.0% |
| !! | CTTTTCTGTATCTTTGGTTC+AGG | - | chr4_1:72360070-72360089 | None:intergenic | 35.0% |
| ! | CTCCTTCTTTTCTGTATCTT+TGG | - | chr4_1:72360076-72360095 | None:intergenic | 35.0% |
| TTAGATTTAGAAGCTGCTGT+TGG | + | chr4_1:72360106-72360125 | Msa0570270:CDS | 35.0% | |
| ATAAACCGTATGCTATTGCT+GGG | - | chr4_1:72360176-72360195 | None:intergenic | 35.0% | |
| TATAAACCGTATGCTATTGC+TGG | - | chr4_1:72360177-72360196 | None:intergenic | 35.0% | |
| GCATACGGTTTATAATTGTG+AGG | + | chr4_1:72360183-72360202 | Msa0570270:three_prime_UTR | 35.0% | |
| !!! | TACTTTGTTTTGTTGGGAGT+TGG | + | chr4_1:72360243-72360262 | Msa0570270:intron | 35.0% |
| !!! | ACTTTGTTTTGTTGGGAGTT+GGG | + | chr4_1:72360244-72360263 | Msa0570270:intron | 35.0% |
| ACAAGACTCCGATTATAATG+CGG | - | chr4_1:72360375-72360394 | None:intergenic | 35.0% | |
| ! | CATTATAATCGGAGTCTTGT+TGG | + | chr4_1:72360375-72360394 | Msa0570270:intron | 35.0% |
| ! | TTATAAAGCTTGAGGGTATG+AGG | + | chr4_1:72360430-72360449 | Msa0570270:intron | 35.0% |
| GTAGCATTTGATGAAGAATG+AGG | + | chr4_1:72360479-72360498 | Msa0570270:intron | 35.0% | |
| TACAGACACACTTAAAACTC+GGG | - | chr4_1:72360575-72360594 | None:intergenic | 35.0% | |
| TATAAGTGTCCAATGAGTGT+AGG | - | chr4_1:72360617-72360636 | None:intergenic | 35.0% | |
| !! | TTTTTGGGGACACTTATTTG+AGG | - | chr4_1:72360644-72360663 | None:intergenic | 35.0% |
| CATGCTTAGTGAACCAAAAA+TGG | - | chr4_1:72360756-72360775 | None:intergenic | 35.0% | |
| AGAGGAAATATGGATGAAAG+AGG | - | chr4_1:72360992-72361011 | None:intergenic | 35.0% | |
| ACAATGAAAGAAAACGAGCA+AGG | - | chr4_1:72361053-72361072 | None:intergenic | 35.0% | |
| ATTTATTGGACGTAGTGCTT+TGG | + | chr4_1:72361079-72361098 | Msa0570270:intron | 35.0% | |
| TACAAAGAGAATCTAGCCAT+GGG | - | chr4_1:72361247-72361266 | None:intergenic | 35.0% | |
| AACATAAAACAAGGGAGCTA+TGG | - | chr4_1:72361309-72361328 | None:intergenic | 35.0% | |
| GCTAAAGATAAATAGCTTCC+GGG | + | chr4_1:72361436-72361455 | Msa0570270:intron | 35.0% | |
| TACGTATGACAAAAGGAAAC+AGG | - | chr4_1:72361567-72361586 | None:intergenic | 35.0% | |
| CTTAGGGTCAAATTTGTGTA+AGG | + | chr4_1:72361668-72361687 | Msa0570270:intron | 35.0% | |
| ! | GGCTATGTAAAAGGCTTTTA+AGG | - | chr4_1:72361791-72361810 | None:intergenic | 35.0% |
| GGTAACAGAATCACATATTG+TGG | - | chr4_1:72361812-72361831 | None:intergenic | 35.0% | |
| ATATGTGATTCTGTTACCAG+TGG | + | chr4_1:72361814-72361833 | Msa0570270:intron | 35.0% | |
| TTGATATCACAGACAGATCA+AGG | - | chr4_1:72361870-72361889 | None:intergenic | 35.0% | |
| !! | CTTTTAGCTGTTGGAAGTTA+AGG | + | chr4_1:72362005-72362024 | Msa0570270:three_prime_UTR | 35.0% |
| CACACATAATAAGAGATGGA+GGG | - | chr4_1:72362170-72362189 | None:intergenic | 35.0% | |
| ACACACATAATAAGAGATGG+AGG | - | chr4_1:72362171-72362190 | None:intergenic | 35.0% | |
| AGGACTGAATGAAACTGTTC+CGG | - | chr4_1:72359177-72359196 | None:intergenic | 40.0% | |
| ! | TGCCGCTTCTGTTTATGAAT+AGG | - | chr4_1:72359197-72359216 | None:intergenic | 40.0% |
| ATGTTGAAGTTGCGTCCTTT+GGG | - | chr4_1:72359252-72359271 | None:intergenic | 40.0% | |
| AATGTTGAAGTTGCGTCCTT+TGG | - | chr4_1:72359253-72359272 | None:intergenic | 40.0% | |
| TGAGAACACCAAGCTGATAT+TGG | - | chr4_1:72359278-72359297 | None:intergenic | 40.0% | |
| TACGACCTTGAATGGAACAA+TGG | + | chr4_1:72359300-72359319 | Msa0570270:CDS | 40.0% | |
| TTAGCACCATCAAGCCAATT+GGG | - | chr4_1:72359402-72359421 | None:intergenic | 40.0% | |
| !! | GCTTGATGGTGCTAACTATT+TGG | + | chr4_1:72359407-72359426 | Msa0570270:intron | 40.0% |
| GAGTAGAAGATCCACTTAAC+AGG | - | chr4_1:72359519-72359538 | None:intergenic | 40.0% | |
| GTTAAGTGGATCTTCTACTC+CGG | + | chr4_1:72359519-72359538 | Msa0570270:intron | 40.0% | |
| GTCGAATAGCTCAACTAGTT+TGG | + | chr4_1:72359672-72359691 | Msa0570270:intron | 40.0% | |
| TTAACGCAGTGTCATACATG+TGG | - | chr4_1:72359824-72359843 | None:intergenic | 40.0% | |
| TGCTCATGTGATGACATTTG+AGG | + | chr4_1:72359982-72360001 | Msa0570270:CDS | 40.0% | |
| ! | CATGTGATGACATTTGAGGT+TGG | + | chr4_1:72359986-72360005 | Msa0570270:CDS | 40.0% |
| GCCTCACTAAAACAATAGAC+AGG | - | chr4_1:72360043-72360062 | None:intergenic | 40.0% | |
| GTTGGAAGCCGCATTATAAT+CGG | + | chr4_1:72360364-72360383 | Msa0570270:intron | 40.0% | |
| AAGAACTCCTGGCTCATATT+AGG | + | chr4_1:72360454-72360473 | Msa0570270:intron | 40.0% | |
| AGAACTCCTGGCTCATATTA+GGG | + | chr4_1:72360455-72360474 | Msa0570270:intron | 40.0% | |
| GCATTTGATGAAGAATGAGG+TGG | + | chr4_1:72360482-72360501 | Msa0570270:intron | 40.0% | |
| TGATGAAGAATGAGGTGGTT+TGG | + | chr4_1:72360487-72360506 | Msa0570270:intron | 40.0% | |
| TTGATCACAAGAGATGACGT+TGG | + | chr4_1:72360519-72360538 | Msa0570270:intron | 40.0% | |
| TAGAGGTGAATTAGTGGTGA+AGG | - | chr4_1:72360545-72360564 | None:intergenic | 40.0% | |
| GTGTGATAGAGGTGAATTAG+TGG | - | chr4_1:72360551-72360570 | None:intergenic | 40.0% | |
| AGTTGGATACCTACACTCAT+TGG | + | chr4_1:72360605-72360624 | Msa0570270:intron | 40.0% | |
| TCTGCCTTGTAGAAATCAGT+AGG | + | chr4_1:72360776-72360795 | Msa0570270:intron | 40.0% | |
| AATATTTGTGCACGTGTCGA+TGG | - | chr4_1:72360847-72360866 | None:intergenic | 40.0% | |
| GAGGACTTGAAGAGGAAATA+TGG | - | chr4_1:72361002-72361021 | None:intergenic | 40.0% | |
| AACATAGAGGCAAAAACCCA+GGG | - | chr4_1:72361117-72361136 | None:intergenic | 40.0% | |
| AAACATAGAGGCAAAAACCC+AGG | - | chr4_1:72361118-72361137 | None:intergenic | 40.0% | |
| !! | TTTGTTGTTGACTGTAGCGT+GGG | + | chr4_1:72361184-72361203 | Msa0570270:intron | 40.0% |
| AGTGACAAAGTCATAGAGGA+AGG | - | chr4_1:72361220-72361239 | None:intergenic | 40.0% | |
| GATGAGTGACAAAGTCATAG+AGG | - | chr4_1:72361224-72361243 | None:intergenic | 40.0% | |
| ACAAAGAGAATCTAGCCATG+GGG | - | chr4_1:72361246-72361265 | None:intergenic | 40.0% | |
| GTACAAAGAGAATCTAGCCA+TGG | - | chr4_1:72361248-72361267 | None:intergenic | 40.0% | |
| ! | TTTGATGATACACCGCCAAA+AGG | + | chr4_1:72361378-72361397 | Msa0570270:intron | 40.0% |
| ! | TTGATGATACACCGCCAAAA+GGG | + | chr4_1:72361379-72361398 | Msa0570270:intron | 40.0% |
| GAGATTGACATTTCCCTCTA+AGG | + | chr4_1:72361621-72361640 | Msa0570270:intron | 40.0% | |
| TGAGCAACACAAACCTTAGA+GGG | - | chr4_1:72361637-72361656 | None:intergenic | 40.0% | |
| ATGAGCAACACAAACCTTAG+AGG | - | chr4_1:72361638-72361657 | None:intergenic | 40.0% | |
| GTTTATTGCATGGCCATTAC+AGG | + | chr4_1:72361980-72361999 | Msa0570270:intron | 40.0% | |
| !! | ACAGCTAAAAGCACCTGTAA+TGG | - | chr4_1:72361996-72362015 | None:intergenic | 40.0% |
| !! | TTACAGGTGCTTTTAGCTGT+TGG | + | chr4_1:72361996-72362015 | Msa0570270:intron | 40.0% |
| ! | TTTTGTCACAGCTAGTGCAT+AGG | + | chr4_1:72362098-72362117 | Msa0570270:three_prime_UTR | 40.0% |
| TTTGTCACAGCTAGTGCATA+GGG | + | chr4_1:72362099-72362118 | Msa0570270:three_prime_UTR | 40.0% | |
| CAAACAAATGCGTTCTTCGG+TGG | - | chr4_1:72359085-72359104 | None:intergenic | 45.0% | |
| !! | CGTTGGAATTGGGTCGTTTT+TGG | - | chr4_1:72359148-72359167 | None:intergenic | 45.0% |
| AAACCGACCTATGGTACGAT+TGG | + | chr4_1:72359226-72359245 | Msa0570270:CDS | 45.0% | |
| !! | AGGTGCCATTGTTCCATTCA+AGG | - | chr4_1:72359308-72359327 | None:intergenic | 45.0% |
| ! | GTCGAGAGTATAGAGAAAGG+AGG | - | chr4_1:72359328-72359347 | None:intergenic | 45.0% |
| ! | AGGGTCGAGAGTATAGAGAA+AGG | - | chr4_1:72359331-72359350 | None:intergenic | 45.0% |
| TGGGTATTCTTCGTCCCAAT+TGG | + | chr4_1:72359385-72359404 | Msa0570270:CDS | 45.0% | |
| GTTAGCACCATCAAGCCAAT+TGG | - | chr4_1:72359403-72359422 | None:intergenic | 45.0% | |
| !! | ATATGATGGTTGGTGAGTGC+AGG | + | chr4_1:72359953-72359972 | Msa0570270:intron | 45.0% |
| GATTTAGAAGCTGCTGTTGG+TGG | + | chr4_1:72360109-72360128 | Msa0570270:CDS | 45.0% | |
| GAACTCCTGGCTCATATTAG+GGG | + | chr4_1:72360456-72360475 | Msa0570270:intron | 45.0% | |
| AACTCCTGGCTCATATTAGG+GGG | + | chr4_1:72360457-72360476 | Msa0570270:intron | 45.0% | |
| ! | AAAACTCGGGAGTGTGATAG+AGG | - | chr4_1:72360562-72360581 | None:intergenic | 45.0% |
| ATTGCATTTCTCTCATCGCC+AGG | + | chr4_1:72360928-72360947 | Msa0570270:intron | 45.0% | |
| TTGCATTTCTCTCATCGCCA+GGG | + | chr4_1:72360929-72360948 | Msa0570270:intron | 45.0% | |
| GTTTACTTCCCAGTCTCTTC+TGG | + | chr4_1:72360960-72360979 | Msa0570270:intron | 45.0% | |
| GAAGTCAAGAGGACTTGAAG+AGG | - | chr4_1:72361010-72361029 | None:intergenic | 45.0% | |
| TTGACTTCTCACCAGGGATA+AGG | + | chr4_1:72361022-72361041 | Msa0570270:intron | 45.0% | |
| GCAAGGAAAAACCTTATCCC+TGG | - | chr4_1:72361036-72361055 | None:intergenic | 45.0% | |
| !! | TTTGGTTCTATACTCTCCCC+TGG | + | chr4_1:72361097-72361116 | Msa0570270:intron | 45.0% |
| !! | TTGGTTCTATACTCTCCCCT+GGG | + | chr4_1:72361098-72361117 | Msa0570270:intron | 45.0% |
| ACATAGAGGCAAAAACCCAG+GGG | - | chr4_1:72361116-72361135 | None:intergenic | 45.0% | |
| AACAACATCAAAGCGCAGAG+AGG | - | chr4_1:72361142-72361161 | None:intergenic | 45.0% | |
| TCTGCGCTTTGATGTTGTTC+AGG | + | chr4_1:72361143-72361162 | Msa0570270:intron | 45.0% | |
| !! | CTTTGTTGTTGACTGTAGCG+TGG | + | chr4_1:72361183-72361202 | Msa0570270:intron | 45.0% |
| ATAAATAGCTTCCGGGCATG+TGG | + | chr4_1:72361443-72361462 | Msa0570270:intron | 45.0% | |
| TTCCGGGCATGTGGTTAATT+TGG | + | chr4_1:72361452-72361471 | Msa0570270:intron | 45.0% | |
| GTCCAAATTAACCACATGCC+CGG | - | chr4_1:72361457-72361476 | None:intergenic | 45.0% | |
| GTAAGATGCTAGATTGCCAC+TGG | - | chr4_1:72361833-72361852 | None:intergenic | 45.0% | |
| TAGCTGTTGGAAGTTAAGGC+AGG | + | chr4_1:72362009-72362028 | Msa0570270:three_prime_UTR | 45.0% | |
| TCTCAAGACCACAGAGTAGT+AGG | - | chr4_1:72362067-72362086 | None:intergenic | 45.0% | |
| GAATGAAACTGTTCCGGCCA+CGG | - | chr4_1:72359171-72359190 | None:intergenic | 50.0% | |
| CTTTGGGCCAATCGTACCAT+AGG | - | chr4_1:72359236-72359255 | None:intergenic | 50.0% | |
| ! | CTATGGTACGATTGGCCCAA+AGG | + | chr4_1:72359234-72359253 | Msa0570270:CDS | 50.0% |
| !! | CTTCGTCCCAATTGGCTTGA+TGG | + | chr4_1:72359393-72359412 | Msa0570270:CDS | 50.0% |
| ACGCAGTGTCATACATGTGG+TGG | - | chr4_1:72359821-72359840 | None:intergenic | 50.0% | |
| !! | ATTTGAGGTTGGTGCAGTGC+TGG | + | chr4_1:72359997-72360016 | Msa0570270:CDS | 50.0% |
| ! | TTAGAAGCTGCTGTTGGTGG+TGG | + | chr4_1:72360112-72360131 | Msa0570270:CDS | 50.0% |
| !!! | CTGTTGGTGGTGGTTTTCGT+GGG | + | chr4_1:72360122-72360141 | Msa0570270:CDS | 50.0% |
| AGCCACCCAGCAATAGCATA+CGG | + | chr4_1:72360168-72360187 | Msa0570270:exon | 50.0% | |
| AACCGTATGCTATTGCTGGG+TGG | - | chr4_1:72360173-72360192 | None:intergenic | 50.0% | |
| GGGTATGAGGTAAGAACTCC+TGG | + | chr4_1:72360443-72360462 | Msa0570270:intron | 50.0% | |
| GTCTGTATATCGACGCGAGT+TGG | + | chr4_1:72360588-72360607 | Msa0570270:intron | 50.0% | |
| GGACAAAGCCAGAAGAGACT+GGG | - | chr4_1:72360971-72360990 | None:intergenic | 50.0% | |
| AGGACAAAGCCAGAAGAGAC+TGG | - | chr4_1:72360972-72360991 | None:intergenic | 50.0% | |
| AGTCCTCTTGACTTCTCACC+AGG | + | chr4_1:72361015-72361034 | Msa0570270:intron | 50.0% | |
| GTCCTCTTGACTTCTCACCA+GGG | + | chr4_1:72361016-72361035 | Msa0570270:intron | 50.0% | |
| ATCCCTGGTGAGAAGTCAAG+AGG | - | chr4_1:72361021-72361040 | None:intergenic | 50.0% | |
| GCGCAGAGAGGAAAACATAG+AGG | - | chr4_1:72361130-72361149 | None:intergenic | 50.0% | |
| GACTTTGTCACTCATCCCCA+TGG | + | chr4_1:72361228-72361247 | Msa0570270:intron | 50.0% | |
| ACGCTCATTCTGCTACCACA+TGG | + | chr4_1:72361282-72361301 | Msa0570270:intron | 50.0% | |
| ACACTCAGCCTACTACTCTG+TGG | + | chr4_1:72362056-72362075 | Msa0570270:three_prime_UTR | 50.0% | |
| AATGCGTTCTTCGGTGGCAG+AGG | - | chr4_1:72359079-72359098 | None:intergenic | 55.0% | |
| GGGCCAATCGTACCATAGGT+CGG | - | chr4_1:72359232-72359251 | None:intergenic | 55.0% | |
| ! | CAGTGCTGGACGATGAGCAT+TGG | + | chr4_1:72360011-72360030 | Msa0570270:CDS | 55.0% |
| !!! | GCTGTTGGTGGTGGTTTTCG+TGG | + | chr4_1:72360121-72360140 | Msa0570270:CDS | 55.0% |
| GCTACCCCCTAATATGAGCC+AGG | - | chr4_1:72360464-72360483 | None:intergenic | 55.0% | |
| TTCTCTCATCGCCAGGGATG+TGG | + | chr4_1:72360935-72360954 | Msa0570270:intron | 55.0% | |
| TCTCTCATCGCCAGGGATGT+GGG | + | chr4_1:72360936-72360955 | Msa0570270:intron | 55.0% | |
| GAAGTAAACCCCCACATCCC+TGG | - | chr4_1:72360949-72360968 | None:intergenic | 55.0% | |
| CAAGGGAGCTATGGACCATG+TGG | - | chr4_1:72361300-72361319 | None:intergenic | 55.0% | |
| ACGACCCAATTCCAACGCCG+TGG | + | chr4_1:72359151-72359170 | Msa0570270:CDS | 60.0% | |
| !! | GCTGGACGATGAGCATTGGC+AGG | + | chr4_1:72360015-72360034 | Msa0570270:CDS | 60.0% |
| CTCTCATCGCCAGGGATGTG+GGG | + | chr4_1:72360937-72360956 | Msa0570270:intron | 60.0% | |
| TCTCATCGCCAGGGATGTGG+GGG | + | chr4_1:72360938-72360957 | Msa0570270:intron | 60.0% | |
| ! | CCGGCCACGGCGTTGGAATT+GGG | - | chr4_1:72359158-72359177 | None:intergenic | 65.0% |
| CCCAATTCCAACGCCGTGGC+CGG | + | chr4_1:72359155-72359174 | Msa0570270:CDS | 65.0% | |
| ! | TCCGGCCACGGCGTTGGAAT+TGG | - | chr4_1:72359159-72359178 | None:intergenic | 65.0% |
| AACTGTTCCGGCCACGGCGT+TGG | - | chr4_1:72359165-72359184 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 72359072 | 72362270 | 72359072 | ID=Msa0570270;Name=Msa0570270 |
| chr4_1 | mRNA | 72359072 | 72362270 | 72359072 | ID=Msa0570270-mRNA-1;Parent=Msa0570270;Name=Msa0570270-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.5|0.66|1|0.5|0.33|3|305|178 |
| chr4_1 | exon | 72359072 | 72359414 | 72359072 | ID=Msa0570270-mRNA-1:exon:24699;Parent=Msa0570270-mRNA-1 |
| chr4_1 | exon | 72359975 | 72360204 | 72359975 | ID=Msa0570270-mRNA-1:exon:24700;Parent=Msa0570270-mRNA-1 |
| chr4_1 | exon | 72362002 | 72362270 | 72362002 | ID=Msa0570270-mRNA-1:exon:24701;Parent=Msa0570270-mRNA-1 |
| chr4_1 | CDS | 72359072 | 72359414 | 72359072 | ID=Msa0570270-mRNA-1:cds;Parent=Msa0570270-mRNA-1 |
| chr4_1 | CDS | 72359975 | 72360168 | 72359975 | ID=Msa0570270-mRNA-1:cds;Parent=Msa0570270-mRNA-1 |
| chr4_1 | three_prime_UTR | 72360169 | 72360204 | 72360169 | ID=Msa0570270-mRNA-1:three_prime_utr;Parent=Msa0570270-mRNA-1 |
| chr4_1 | three_prime_UTR | 72362002 | 72362270 | 72362002 | ID=Msa0570270-mRNA-1:three_prime_utr;Parent=Msa0570270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
