AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568120 MtrunA17_Chr8g0382711 98.122 213 4 0 1 213 1 213 2.48e-154 426
Msa0568120 MtrunA17_Chr4g0052911 53.846 130 59 1 76 204 108 237 1.01e-42 144
Msa0568120 MtrunA17_Chr8g0339171 40.000 110 55 2 104 213 46 144 9.50e-20 82.0
Msa0568120 MtrunA17_Chr4g0033841 28.090 178 111 4 36 203 48 218 3.60e-17 77.0
Msa0568120 MtrunA17_Chr7g0234801 38.235 102 50 3 108 208 52 141 9.13e-13 66.6
Msa0568120 MtrunA17_Chr8g0377771 36.885 122 63 4 89 208 36 145 1.53e-12 65.9
Msa0568120 MtrunA17_Chr8g0339141 36.449 107 55 3 103 208 53 147 8.56e-12 63.5
Msa0568120 MtrunA17_Chr1g0179681 35.075 134 66 5 81 206 123 243 1.31e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568120 AT4G39710.1 76.471 170 40 0 44 213 48 217 1.03e-94 276
Msa0568120 AT4G39710.3 76.471 170 40 0 44 213 48 217 1.03e-94 276
Msa0568120 AT4G39710.2 75.630 119 29 0 44 162 48 166 2.08e-62 192
Msa0568120 AT5G45680.1 56.911 123 53 0 83 205 84 206 6.18e-44 146
Msa0568120 AT5G48580.1 39.806 103 51 2 104 206 48 139 1.63e-18 79.3
Msa0568120 AT3G25220.1 40.777 103 50 2 104 206 48 139 9.44e-18 77.0
Msa0568120 AT2G43560.1 32.317 164 85 5 49 203 66 212 1.19e-15 73.2
Msa0568120 AT2G43560.2 32.317 164 85 5 49 203 10 156 1.23e-15 72.0
Msa0568120 AT5G05420.1 37.736 106 52 4 102 206 50 142 1.21e-14 68.6
Msa0568120 AT3G25230.1 37.008 127 66 4 84 208 32 146 3.06e-13 68.2
Msa0568120 AT3G25230.2 37.008 127 66 4 84 208 32 146 3.17e-13 68.2
Msa0568120 AT5G48570.1 36.634 101 53 2 108 208 65 154 1.25e-11 63.5
Msa0568120 AT3G10060.1 30.000 160 91 5 55 206 70 216 2.53e-11 61.6

Find 95 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTGGATCAGGGAATTT+TGG 0.124572 4_1:+69707264 Msa0568120:CDS
GGATCCCCTTTACTCTTAAA+AGG 0.169519 4_1:-69708977 None:intergenic
GCAAAGATGAATCATGATTT+TGG 0.178363 4_1:+69709210 Msa0568120:three_prime_UTR
AGTTAAAATGTACAATTTCT+TGG 0.227295 4_1:+69709251 Msa0568120:three_prime_UTR
AATGTGAATTTCAGGTAATT+AGG 0.235234 4_1:+69707242 Msa0568120:intron
TAAATTTGTTGGTCTTTATT+CGG 0.242676 4_1:+69708058 Msa0568120:CDS
TGCTGAGCATAACACCTTAT+TGG 0.256082 4_1:-69706740 None:intergenic
TACTCTTAAAAGGGGTATTC+AGG 0.261225 4_1:-69708967 None:intergenic
GGATTAAAGATACAAGTAAT+AGG 0.266749 4_1:-69709147 None:intergenic
GAGTAATGAAATGGACATTT+TGG 0.269018 4_1:+69708848 Msa0568120:intron
TGTGATTATGTTGAGGGTTT+TGG 0.277118 4_1:+69706931 Msa0568120:CDS
GGTAATTAGGGGATTGGATC+AGG 0.291509 4_1:+69707255 Msa0568120:intron
GAGCTTAATTATGTTAAATC+TGG 0.297049 4_1:+69706898 Msa0568120:CDS
GTTAGGCAGATTCTCCTTCC+TGG 0.307741 4_1:+69708892 Msa0568120:three_prime_UTR
AAATTTGTTGGTCTTTATTC+GGG 0.311128 4_1:+69708059 Msa0568120:CDS
GTGTTATGCTCAGCACTTAA+TGG 0.318669 4_1:+69706748 Msa0568120:CDS
CTGTATGATATTAAATTTGT+TGG 0.318710 4_1:+69708047 Msa0568120:CDS
CGTTAGTTGGAATTGGTATT+GGG 0.335154 4_1:+69706785 Msa0568120:CDS
ATGTGAATTTCAGGTAATTA+GGG 0.335286 4_1:+69707243 Msa0568120:intron
GAACCTGCAGGCTGCTTCTC+AGG 0.336346 4_1:+69707448 Msa0568120:CDS
TTTGGTGATGAAGCTCCTTT+AGG 0.338411 4_1:+69706949 Msa0568120:CDS
GAGAAGCAGCCTGCAGGTTC+AGG 0.345343 4_1:-69707445 None:intergenic
ACACACACACAGATAGAAAA+TGG 0.363468 4_1:+69706630 Msa0568120:exon
ATATGAACCACACGTGGATT+AGG 0.372541 4_1:+69708126 Msa0568120:three_prime_UTR
CTCTCATTCTCACTCTGTTC+AGG 0.375218 4_1:+69706655 Msa0568120:CDS
AAGAAGCCGTTAGTTGGAAT+TGG 0.375819 4_1:+69706778 Msa0568120:CDS
CCGTTAGTTGGAATTGGTAT+TGG 0.376392 4_1:+69706784 Msa0568120:CDS
GGTTATTGTGATTATGTTGA+GGG 0.390983 4_1:+69706925 Msa0568120:CDS
CCTTCTTGTATGAAATTGAA+TGG 0.401384 4_1:+69706700 Msa0568120:CDS
CAATATTGCACTCTGAATGA+TGG 0.405638 4_1:+69709092 Msa0568120:three_prime_UTR
CATGTCCAACTGCACTAAAC+AGG 0.407915 4_1:-69708939 None:intergenic
AATTATGTTAAATCTGGGCT+TGG 0.422396 4_1:+69706904 Msa0568120:CDS
ATTGTAGCAGCATGGGTAAT+GGG 0.427828 4_1:+69706808 Msa0568120:CDS
AATTGTTTAGAGTAATGAAA+TGG 0.430565 4_1:+69708839 Msa0568120:intron
ATTTCAGGTAATTAGGGGAT+TGG 0.431931 4_1:+69707249 Msa0568120:intron
CTATTCCTGTTTAGTGCAGT+TGG 0.438216 4_1:+69708934 Msa0568120:three_prime_UTR
GATCCCCTTTACTCTTAAAA+GGG 0.440507 4_1:-69708976 None:intergenic
ATGATATGAGTAACTCCATT+TGG 0.450015 4_1:-69706574 None:intergenic
GATTAAAGATACAAGTAATA+GGG 0.452910 4_1:-69709146 None:intergenic
GGGATTAACGGCGTTGGATG+CGG 0.454068 4_1:+69706828 Msa0568120:CDS
AGCTTAATTATGTTAAATCT+GGG 0.462974 4_1:+69706899 Msa0568120:CDS
AAGTTATAAAGTATCCAATA+AGG 0.464158 4_1:+69706726 Msa0568120:CDS
CACAGAGGAAGAAGATCAAA+AGG 0.465127 4_1:-69709168 None:intergenic
AACGAAAAGAAGCCGTTAGT+TGG 0.477049 4_1:+69706772 Msa0568120:CDS
GTGTGCTGTTTGCAATGAAA+TGG 0.477161 4_1:+69709188 Msa0568120:three_prime_UTR
AGCATGGGTAATGGGATTAA+CGG 0.477643 4_1:+69706816 Msa0568120:CDS
AATAGGTGACTGCAATATAC+CGG 0.483379 4_1:+69708010 Msa0568120:intron
ATTTCATACAAGAAGGAAAA+CGG 0.483988 4_1:-69706693 None:intergenic
CCATTCAATTTCATACAAGA+AGG 0.487470 4_1:-69706700 None:intergenic
GATTGTAGCAGCATGGGTAA+TGG 0.497305 4_1:+69706807 Msa0568120:CDS
TGGTTATTGTGATTATGTTG+AGG 0.508666 4_1:+69706924 Msa0568120:CDS
TGATATATATTAGACAAGTC+TGG 0.509545 4_1:+69709013 Msa0568120:three_prime_UTR
AGAAAGGATGGTATGCCAAA+TGG 0.512086 4_1:+69706559 None:intergenic
ATTCCTCCATTGTTAGCGTA+TGG 0.515896 4_1:+69707421 Msa0568120:CDS
AATTTGAGAGAGCTGGAACC+AGG 0.519696 4_1:-69708910 None:intergenic
ATATATCACCGCACCAGAGT+TGG 0.530324 4_1:-69708998 None:intergenic
AAACCTGAGAAGCAGCCTGC+AGG 0.532161 4_1:-69707451 None:intergenic
GAGTAAAGGGGATCCAACTC+TGG 0.535853 4_1:+69708985 Msa0568120:three_prime_UTR
TGAGTGTGGATCAACTTGTT+AGG 0.538737 4_1:+69708875 Msa0568120:three_prime_UTR
TACAGAAGAGTTGCATTGCC+CGG 0.539306 4_1:-69708029 None:intergenic
GAATAGTAATTTGAGAGAGC+TGG 0.541808 4_1:-69708917 None:intergenic
AATATAATACCTATCCGCAT+TGG 0.544357 4_1:-69707304 None:intergenic
GGTAATGGGATTAACGGCGT+TGG 0.544791 4_1:+69706822 Msa0568120:CDS
AGGCCACTCACTATGCGTAT+TGG 0.545910 4_1:+69707136 Msa0568120:CDS
ACATCAATAAGCTCTCCTAA+AGG 0.553954 4_1:-69706964 None:intergenic
ATAATACCTATCCGCATTGG+AGG 0.558936 4_1:-69707301 None:intergenic
GCGTATGGTCCTGAACCTGC+AGG 0.559980 4_1:+69707436 Msa0568120:CDS
TGTGTGTGTATAGTTCTCTA+AGG 0.563555 4_1:-69706612 None:intergenic
CTCACTATGCGTATTGGTGT+TGG 0.565060 4_1:+69707142 Msa0568120:CDS
ATAGTAGTTATAAACGTGCT+AGG 0.567467 4_1:+69707116 Msa0568120:CDS
TATTGGGATTGTAGCAGCAT+GGG 0.571835 4_1:+69706801 Msa0568120:CDS
GCCACATGGTGTAGAAAGGA+TGG 0.591372 4_1:+69706547 None:intergenic
AATTGAATACTATGCTACTG+TGG 0.592481 4_1:+69706861 Msa0568120:CDS
GTAATTAGGGGATTGGATCA+GGG 0.593610 4_1:+69707256 Msa0568120:CDS
ATTGAATACTATGCTACTGT+GGG 0.611936 4_1:+69706862 Msa0568120:CDS
ATCCCCTTTACTCTTAAAAG+GGG 0.619462 4_1:-69708975 None:intergenic
CCAATACCAATTCCAACTAA+CGG 0.620051 4_1:-69706784 None:intergenic
TGAGAGAGCTGGAACCAGGA+AGG 0.621370 4_1:-69708906 None:intergenic
TATGCGTATTGGTGTTGGCA+AGG 0.622438 4_1:+69707147 Msa0568120:CDS
GTATTGGGATTGTAGCAGCA+TGG 0.623097 4_1:+69706800 Msa0568120:CDS
TGTGAATTTCAGGTAATTAG+GGG 0.623369 4_1:+69707244 Msa0568120:intron
ACATAATTAAGCTCACACAT+TGG 0.625130 4_1:-69706889 None:intergenic
GGCGTACCTCCAATGCGGAT+AGG 0.639198 4_1:+69707295 Msa0568120:CDS
AGAAGGAAAACGGTTATGAA+CGG 0.643601 4_1:-69706683 None:intergenic
ATAGGTGACTGCAATATACC+GGG 0.650180 4_1:+69708011 Msa0568120:intron
TCAGGACCATACGCTAACAA+TGG 0.656714 4_1:-69707427 None:intergenic
ACTATCGAATACTATTCCAT+CGG 0.660108 4_1:-69707098 None:intergenic
GGACCATACGCTAACAATGG+AGG 0.666829 4_1:-69707424 None:intergenic
ACACCAATACGCATAGTGAG+TGG 0.668322 4_1:-69707139 None:intergenic
AAGGGGATCCAACTCTGGTG+CGG 0.676952 4_1:+69708990 Msa0568120:three_prime_UTR
TATACTGCTAGATTCGCCGA+TGG 0.684653 4_1:+69707082 Msa0568120:CDS
AAACTCACCTAATCCACGTG+TGG 0.702738 4_1:-69708133 None:intergenic
ATACACATATGAACCACACG+TGG 0.705108 4_1:+69708120 Msa0568120:three_prime_UTR
GTGAAGGCGTACCTCCAATG+CGG 0.724987 4_1:+69707290 Msa0568120:CDS
TCATTGCAAACAGCACACAG+AGG 0.755533 4_1:-69709183 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTACTATTTTTACTT+AGG + chr4_1:69707379-69707398 Msa0568120:intron 10.0%
!!! AAGTTATAAAGTATCCAATA+AGG + chr4_1:69706726-69706745 Msa0568120:CDS 20.0%
!! AGCTTAATTATGTTAAATCT+GGG + chr4_1:69706899-69706918 Msa0568120:CDS 20.0%
!!! ATTTACTATTTTTACTTAGG+TGG + chr4_1:69707382-69707401 Msa0568120:intron 20.0%
!!! TTTACTATTTTTACTTAGGT+GGG + chr4_1:69707383-69707402 Msa0568120:intron 20.0%
!! TGAAACATTAATTGTGTATT+TGG + chr4_1:69707582-69707601 Msa0568120:intron 20.0%
!! ACATTGGTAGAAAATATATT+GGG - chr4_1:69707631-69707650 None:intergenic 20.0%
!! TACATTGGTAGAAAATATAT+TGG - chr4_1:69707632-69707651 None:intergenic 20.0%
!! AGTAGCAACTTATTTAAATT+CGG - chr4_1:69707676-69707695 None:intergenic 20.0%
!!! TTGTGTTTTTCTTAATTGAA+AGG + chr4_1:69707856-69707875 Msa0568120:intron 20.0%
!! CTGTATGATATTAAATTTGT+TGG + chr4_1:69708047-69708066 Msa0568120:CDS 20.0%
!!! TAAATTTGTTGGTCTTTATT+CGG + chr4_1:69708058-69708077 Msa0568120:CDS 20.0%
!!! TAAACTAATACATTTTTCTC+TGG + chr4_1:69708697-69708716 Msa0568120:intron 20.0%
!!! AATTGTTTAGAGTAATGAAA+TGG + chr4_1:69708839-69708858 Msa0568120:intron 20.0%
!! GATTAAAGATACAAGTAATA+GGG - chr4_1:69709149-69709168 None:intergenic 20.0%
!! AGTTAAAATGTACAATTTCT+TGG + chr4_1:69709251-69709270 Msa0568120:three_prime_UTR 20.0%
! ATTTCATACAAGAAGGAAAA+CGG - chr4_1:69706696-69706715 None:intergenic 25.0%
! GAGCTTAATTATGTTAAATC+TGG + chr4_1:69706898-69706917 Msa0568120:CDS 25.0%
!!! TTTCATGTTTTTGTTGAGTT+TGG + chr4_1:69707206-69707225 Msa0568120:intron 25.0%
!! AATGTGAATTTCAGGTAATT+AGG + chr4_1:69707242-69707261 Msa0568120:intron 25.0%
!! ATGTGAATTTCAGGTAATTA+GGG + chr4_1:69707243-69707262 Msa0568120:intron 25.0%
! TAAAAAATGTAGTAGACACT+TGG + chr4_1:69707550-69707569 Msa0568120:intron 25.0%
! ATTGGTAGAAAATATATTGG+GGG - chr4_1:69707629-69707648 None:intergenic 25.0%
! CATTGGTAGAAAATATATTG+GGG - chr4_1:69707630-69707649 None:intergenic 25.0%
! GAATTTAAATAAGTTGCTAC+TGG + chr4_1:69707675-69707694 Msa0568120:intron 25.0%
!! ATAAAACCATGGATTTTGTT+AGG + chr4_1:69707882-69707901 Msa0568120:intron 25.0%
!!! AAATTTGTTGGTCTTTATTC+GGG + chr4_1:69708059-69708078 Msa0568120:CDS 25.0%
! CAAAATATTCTCAAAAGATC+AGG - chr4_1:69708159-69708178 None:intergenic 25.0%
!! CTGTTTAAAATATTGACACA+GGG + chr4_1:69708436-69708455 Msa0568120:intron 25.0%
!! AACATTTTTCTTGTGCAATA+TGG + chr4_1:69708468-69708487 Msa0568120:intron 25.0%
! CATTCATCTTAAATATCACT+CGG - chr4_1:69708601-69708620 None:intergenic 25.0%
!! AGTGATATTTAAGATGAATG+AGG + chr4_1:69708601-69708620 Msa0568120:intron 25.0%
!!! GCGTATCATTATAGTTTTAA+AGG - chr4_1:69708735-69708754 None:intergenic 25.0%
! TTAAAACTATAATGATACGC+CGG + chr4_1:69708735-69708754 Msa0568120:intron 25.0%
!!! GGTCTTGATTTTCTAAAAAT+AGG + chr4_1:69708774-69708793 Msa0568120:intron 25.0%
! TGATATATATTAGACAAGTC+TGG + chr4_1:69709013-69709032 Msa0568120:three_prime_UTR 25.0%
! GGATTAAAGATACAAGTAAT+AGG - chr4_1:69709150-69709169 None:intergenic 25.0%
!! CAAAGATGAATCATGATTTT+GGG + chr4_1:69709211-69709230 Msa0568120:three_prime_UTR 25.0%
ATGATATGAGTAACTCCATT+TGG - chr4_1:69706577-69706596 None:intergenic 30.0%
CCATTCAATTTCATACAAGA+AGG - chr4_1:69706703-69706722 None:intergenic 30.0%
CCTTCTTGTATGAAATTGAA+TGG + chr4_1:69706700-69706719 Msa0568120:CDS 30.0%
AATTGAATACTATGCTACTG+TGG + chr4_1:69706861-69706880 Msa0568120:CDS 30.0%
ATTGAATACTATGCTACTGT+GGG + chr4_1:69706862-69706881 Msa0568120:CDS 30.0%
ACATAATTAAGCTCACACAT+TGG - chr4_1:69706892-69706911 None:intergenic 30.0%
AATTATGTTAAATCTGGGCT+TGG + chr4_1:69706904-69706923 Msa0568120:CDS 30.0%
TGGTTATTGTGATTATGTTG+AGG + chr4_1:69706924-69706943 Msa0568120:CDS 30.0%
GGTTATTGTGATTATGTTGA+GGG + chr4_1:69706925-69706944 Msa0568120:CDS 30.0%
ACTATCGAATACTATTCCAT+CGG - chr4_1:69707101-69707120 None:intergenic 30.0%
ATAGTAGTTATAAACGTGCT+AGG + chr4_1:69707116-69707135 Msa0568120:CDS 30.0%
TTGTTGAGTTTGGACTTATA+AGG + chr4_1:69707216-69707235 Msa0568120:intron 30.0%
TGTTGAGTTTGGACTTATAA+GGG + chr4_1:69707217-69707236 Msa0568120:intron 30.0%
! TGTGAATTTCAGGTAATTAG+GGG + chr4_1:69707244-69707263 Msa0568120:intron 30.0%
AATATAATACCTATCCGCAT+TGG - chr4_1:69707307-69707326 None:intergenic 30.0%
! GTTTAAGTTTCATGCATTCA+TGG + chr4_1:69707338-69707357 Msa0568120:intron 30.0%
!! GTGTAATTTGCTACTAAACA+TGG + chr4_1:69707501-69707520 Msa0568120:intron 30.0%
TTGGTAGAAAATATATTGGG+GGG - chr4_1:69707628-69707647 None:intergenic 30.0%
!!! TGTAGCTGCTTTTTTTACAT+TGG - chr4_1:69707647-69707666 None:intergenic 30.0%
AGCACACACAAAAACAAATT+CGG - chr4_1:69707831-69707850 None:intergenic 30.0%
! TTGAAAGGAGTATAAAACCA+TGG + chr4_1:69707871-69707890 Msa0568120:intron 30.0%
TTACATGACATGGTCAATAT+TGG - chr4_1:69708308-69708327 None:intergenic 30.0%
! CATACTGTGTTTTATCATGA+AGG - chr4_1:69708370-69708389 None:intergenic 30.0%
! GCTGTTTAAAATATTGACAC+AGG + chr4_1:69708435-69708454 Msa0568120:intron 30.0%
CACAAGAAAAATGTTCACAA+AGG - chr4_1:69708463-69708482 None:intergenic 30.0%
! GAGTAATGAAATGGACATTT+TGG + chr4_1:69708848-69708867 Msa0568120:intron 30.0%
!! AATACCCCTTTTAAGAGTAA+AGG + chr4_1:69708971-69708990 Msa0568120:three_prime_UTR 30.0%
!! ATACCCCTTTTAAGAGTAAA+GGG + chr4_1:69708972-69708991 Msa0568120:three_prime_UTR 30.0%
! GCAAAGATGAATCATGATTT+TGG + chr4_1:69709210-69709229 Msa0568120:three_prime_UTR 30.0%
TGTGTGTGTATAGTTCTCTA+AGG - chr4_1:69706615-69706634 None:intergenic 35.0%
ACACACACACAGATAGAAAA+TGG + chr4_1:69706630-69706649 Msa0568120:exon 35.0%
AGAAGGAAAACGGTTATGAA+CGG - chr4_1:69706686-69706705 None:intergenic 35.0%
CCAATACCAATTCCAACTAA+CGG - chr4_1:69706787-69706806 None:intergenic 35.0%
CGTTAGTTGGAATTGGTATT+GGG + chr4_1:69706785-69706804 Msa0568120:CDS 35.0%
! TGTGATTATGTTGAGGGTTT+TGG + chr4_1:69706931-69706950 Msa0568120:CDS 35.0%
ACATCAATAAGCTCTCCTAA+AGG - chr4_1:69706967-69706986 None:intergenic 35.0%
TAAGGGTGAATGTGAATTTC+AGG + chr4_1:69707234-69707253 Msa0568120:intron 35.0%
! ATTTCAGGTAATTAGGGGAT+TGG + chr4_1:69707249-69707268 Msa0568120:intron 35.0%
!!! AGTTTTGTCGCTGATTCAAT+AGG + chr4_1:69707993-69708012 Msa0568120:intron 35.0%
AATAGGTGACTGCAATATAC+CGG + chr4_1:69708010-69708029 Msa0568120:intron 35.0%
GATAAAACAATCTGAGTGCT+AGG - chr4_1:69708208-69708227 None:intergenic 35.0%
ATTGACCATGTCATGTAATC+AGG + chr4_1:69708310-69708329 Msa0568120:intron 35.0%
! GGAAGCTTTTATGCATTTGT+AGG + chr4_1:69708331-69708350 Msa0568120:intron 35.0%
CATCATTAACCTTATCCTAG+TGG + chr4_1:69708532-69708551 Msa0568120:intron 35.0%
!! AATGAAATGGACATTTTGGC+TGG + chr4_1:69708852-69708871 Msa0568120:three_prime_UTR 35.0%
GAATAGTAATTTGAGAGAGC+TGG - chr4_1:69708920-69708939 None:intergenic 35.0%
!! TACTCTTAAAAGGGGTATTC+AGG - chr4_1:69708970-69708989 None:intergenic 35.0%
!! TACCCCTTTTAAGAGTAAAG+GGG + chr4_1:69708973-69708992 Msa0568120:three_prime_UTR 35.0%
ATCCCCTTTACTCTTAAAAG+GGG - chr4_1:69708978-69708997 None:intergenic 35.0%
GATCCCCTTTACTCTTAAAA+GGG - chr4_1:69708979-69708998 None:intergenic 35.0%
CAATATTGCACTCTGAATGA+TGG + chr4_1:69709092-69709111 Msa0568120:three_prime_UTR 35.0%
! AGATGAATCATGATTTTGGG+TGG + chr4_1:69709214-69709233 Msa0568120:three_prime_UTR 35.0%
TGCTGAGCATAACACCTTAT+TGG - chr4_1:69706743-69706762 None:intergenic 40.0%
GTGTTATGCTCAGCACTTAA+TGG + chr4_1:69706748-69706767 Msa0568120:CDS 40.0%
AACGAAAAGAAGCCGTTAGT+TGG + chr4_1:69706772-69706791 Msa0568120:CDS 40.0%
AAGAAGCCGTTAGTTGGAAT+TGG + chr4_1:69706778-69706797 Msa0568120:CDS 40.0%
CCGTTAGTTGGAATTGGTAT+TGG + chr4_1:69706784-69706803 Msa0568120:CDS 40.0%
TATTGGGATTGTAGCAGCAT+GGG + chr4_1:69706801-69706820 Msa0568120:CDS 40.0%
ATTGTAGCAGCATGGGTAAT+GGG + chr4_1:69706808-69706827 Msa0568120:CDS 40.0%
!! AGCATGGGTAATGGGATTAA+CGG + chr4_1:69706816-69706835 Msa0568120:CDS 40.0%
!! TTTGGTGATGAAGCTCCTTT+AGG + chr4_1:69706949-69706968 Msa0568120:CDS 40.0%
GTAATTAGGGGATTGGATCA+GGG + chr4_1:69707256-69707275 Msa0568120:CDS 40.0%
! GGATTGGATCAGGGAATTTT+GGG + chr4_1:69707265-69707284 Msa0568120:CDS 40.0%
! GATTGGATCAGGGAATTTTG+GGG + chr4_1:69707266-69707285 Msa0568120:CDS 40.0%
! ATTGGATCAGGGAATTTTGG+GGG + chr4_1:69707267-69707286 Msa0568120:CDS 40.0%
ATAATACCTATCCGCATTGG+AGG - chr4_1:69707304-69707323 None:intergenic 40.0%
ATTCCTCCATTGTTAGCGTA+TGG + chr4_1:69707421-69707440 Msa0568120:CDS 40.0%
! ACCATGGATTTTGTTAGGCT+TGG + chr4_1:69707887-69707906 Msa0568120:intron 40.0%
TCCAAGCCTAACAAAATCCA+TGG - chr4_1:69707891-69707910 None:intergenic 40.0%
ATAGGTGACTGCAATATACC+GGG + chr4_1:69708011-69708030 Msa0568120:intron 40.0%
ATACACATATGAACCACACG+TGG + chr4_1:69708120-69708139 Msa0568120:three_prime_UTR 40.0%
ATATGAACCACACGTGGATT+AGG + chr4_1:69708126-69708145 Msa0568120:three_prime_UTR 40.0%
AGCTTCCTGATTACATGACA+TGG - chr4_1:69708318-69708337 None:intergenic 40.0%
TTTGCTGACACACATGATCA+TGG + chr4_1:69708401-69708420 Msa0568120:intron 40.0%
TTAACCTTATCCTAGTGGCT+TGG + chr4_1:69708537-69708556 Msa0568120:intron 40.0%
AATCAAGACCAGAGAATGCA+TGG - chr4_1:69708764-69708783 None:intergenic 40.0%
! TGAGTGTGGATCAACTTGTT+AGG + chr4_1:69708875-69708894 Msa0568120:three_prime_UTR 40.0%
CTATTCCTGTTTAGTGCAGT+TGG + chr4_1:69708934-69708953 Msa0568120:three_prime_UTR 40.0%
GGATCCCCTTTACTCTTAAA+AGG - chr4_1:69708980-69708999 None:intergenic 40.0%
CACAGAGGAAGAAGATCAAA+AGG - chr4_1:69709171-69709190 None:intergenic 40.0%
!! GTGTGCTGTTTGCAATGAAA+TGG + chr4_1:69709188-69709207 Msa0568120:three_prime_UTR 40.0%
CTCTCATTCTCACTCTGTTC+AGG + chr4_1:69706655-69706674 Msa0568120:CDS 45.0%
GTATTGGGATTGTAGCAGCA+TGG + chr4_1:69706800-69706819 Msa0568120:CDS 45.0%
GATTGTAGCAGCATGGGTAA+TGG + chr4_1:69706807-69706826 Msa0568120:CDS 45.0%
TATACTGCTAGATTCGCCGA+TGG + chr4_1:69707082-69707101 Msa0568120:CDS 45.0%
ACACCAATACGCATAGTGAG+TGG - chr4_1:69707142-69707161 None:intergenic 45.0%
! CTCACTATGCGTATTGGTGT+TGG + chr4_1:69707142-69707161 Msa0568120:CDS 45.0%
!! TATGCGTATTGGTGTTGGCA+AGG + chr4_1:69707147-69707166 Msa0568120:CDS 45.0%
GGTAATTAGGGGATTGGATC+AGG + chr4_1:69707255-69707274 Msa0568120:intron 45.0%
! GGGATTGGATCAGGGAATTT+TGG + chr4_1:69707264-69707283 Msa0568120:CDS 45.0%
! TTGGATCAGGGAATTTTGGG+GGG + chr4_1:69707268-69707287 Msa0568120:CDS 45.0%
TCAGGACCATACGCTAACAA+TGG - chr4_1:69707430-69707449 None:intergenic 45.0%
TACAGAAGAGTTGCATTGCC+CGG - chr4_1:69708032-69708051 None:intergenic 45.0%
AAACTCACCTAATCCACGTG+TGG - chr4_1:69708136-69708155 None:intergenic 45.0%
AGAGCAAACAGAAAGTGAGC+TGG - chr4_1:69708230-69708249 None:intergenic 45.0%
TAAGCCAAGCCACTAGGATA+AGG - chr4_1:69708544-69708563 None:intergenic 45.0%
AATTTGAGAGAGCTGGAACC+AGG - chr4_1:69708913-69708932 None:intergenic 45.0%
CATGTCCAACTGCACTAAAC+AGG - chr4_1:69708942-69708961 None:intergenic 45.0%
ATATATCACCGCACCAGAGT+TGG - chr4_1:69709001-69709020 None:intergenic 45.0%
TCATTGCAAACAGCACACAG+AGG - chr4_1:69709186-69709205 None:intergenic 45.0%
!! GGTAATGGGATTAACGGCGT+TGG + chr4_1:69706822-69706841 Msa0568120:CDS 50.0%
AGGCCACTCACTATGCGTAT+TGG + chr4_1:69707136-69707155 Msa0568120:CDS 50.0%
GGACCATACGCTAACAATGG+AGG - chr4_1:69707427-69707446 None:intergenic 50.0%
GACGAATAAGCCAAGCCACT+AGG - chr4_1:69708550-69708569 None:intergenic 50.0%
ACCAGAGAATGCATGGAGAC+CGG - chr4_1:69708757-69708776 None:intergenic 50.0%
!!! GACATTTTGGCTGGTGAGTG+TGG + chr4_1:69708861-69708880 Msa0568120:three_prime_UTR 50.0%
GTTAGGCAGATTCTCCTTCC+TGG + chr4_1:69708892-69708911 Msa0568120:three_prime_UTR 50.0%
GAGTAAAGGGGATCCAACTC+TGG + chr4_1:69708985-69709004 Msa0568120:three_prime_UTR 50.0%
! GGGATTAACGGCGTTGGATG+CGG + chr4_1:69706828-69706847 Msa0568120:CDS 55.0%
!! CAGGGAATTTTGGGGGGTGA+AGG + chr4_1:69707274-69707293 Msa0568120:CDS 55.0%
! GTGAAGGCGTACCTCCAATG+CGG + chr4_1:69707290-69707309 Msa0568120:CDS 55.0%
AAACCTGAGAAGCAGCCTGC+AGG - chr4_1:69707454-69707473 None:intergenic 55.0%
TGAGAGAGCTGGAACCAGGA+AGG - chr4_1:69708909-69708928 None:intergenic 55.0%
AAGGGGATCCAACTCTGGTG+CGG + chr4_1:69708990-69709009 Msa0568120:three_prime_UTR 55.0%
GGCGTACCTCCAATGCGGAT+AGG + chr4_1:69707295-69707314 Msa0568120:CDS 60.0%
GCGTATGGTCCTGAACCTGC+AGG + chr4_1:69707436-69707455 Msa0568120:CDS 60.0%
GAGAAGCAGCCTGCAGGTTC+AGG - chr4_1:69707448-69707467 None:intergenic 60.0%
GAACCTGCAGGCTGCTTCTC+AGG + chr4_1:69707448-69707467 Msa0568120:CDS 60.0%
GCCGGTCTCCATGCATTCTC+TGG + chr4_1:69708753-69708772 Msa0568120:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 69706562 69709274 69706562 ID=Msa0568120;Name=Msa0568120
chr4_1 mRNA 69706562 69709274 69706562 ID=Msa0568120-mRNA-1;Parent=Msa0568120;Name=Msa0568120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=87|1|1|1|0.8|0.66|6|476|213
chr4_1 exon 69706562 69706984 69706562 ID=Msa0568120-mRNA-1:exon:23306;Parent=Msa0568120-mRNA-1
chr4_1 exon 69707076 69707168 69707076 ID=Msa0568120-mRNA-1:exon:23307;Parent=Msa0568120-mRNA-1
chr4_1 exon 69707256 69707316 69707256 ID=Msa0568120-mRNA-1:exon:23308;Parent=Msa0568120-mRNA-1
chr4_1 exon 69707401 69707469 69707401 ID=Msa0568120-mRNA-1:exon:23309;Parent=Msa0568120-mRNA-1
chr4_1 exon 69708015 69708147 69708015 ID=Msa0568120-mRNA-1:exon:23310;Parent=Msa0568120-mRNA-1
chr4_1 exon 69708849 69709274 69708849 ID=Msa0568120-mRNA-1:exon:23311;Parent=Msa0568120-mRNA-1
chr4_1 five_prime_UTR 69706562 69706648 69706562 ID=Msa0568120-mRNA-1:five_prime_utr;Parent=Msa0568120-mRNA-1
chr4_1 CDS 69706649 69706984 69706649 ID=Msa0568120-mRNA-1:cds;Parent=Msa0568120-mRNA-1
chr4_1 CDS 69707076 69707168 69707076 ID=Msa0568120-mRNA-1:cds;Parent=Msa0568120-mRNA-1
chr4_1 CDS 69707256 69707316 69707256 ID=Msa0568120-mRNA-1:cds;Parent=Msa0568120-mRNA-1
chr4_1 CDS 69707401 69707469 69707401 ID=Msa0568120-mRNA-1:cds;Parent=Msa0568120-mRNA-1
chr4_1 CDS 69708015 69708097 69708015 ID=Msa0568120-mRNA-1:cds;Parent=Msa0568120-mRNA-1
chr4_1 three_prime_UTR 69708098 69708147 69708098 ID=Msa0568120-mRNA-1:three_prime_utr;Parent=Msa0568120-mRNA-1
chr4_1 three_prime_UTR 69708849 69709274 69708849 ID=Msa0568120-mRNA-1:three_prime_utr;Parent=Msa0568120-mRNA-1
Gene Sequence

>Msa0568120

ATGGCACTCTCATTCTCACTCTGTTCAGGCGCAACCGTTCATAACCGTTTTCCTTCTTGTATGAAATTGAATGGTAAAAGTTATAAAGTATCCAATAAGGTGTTATGCTCAGCACTTAATGGTAACGAAAAGAAGCCGTTAGTTGGAATTGGTATTGGGATTGTAGCAGCATGGGTAATGGGATTAACGGCGTTGGATGCGGATGCAACGAGAATTGAATACTATGCTACTGTGGGAGAGCCAATGTGTGAGCTTAATTATGTTAAATCTGGGCTTGGTTATTGTGATTATGTTGAGGGTTTTGGTGATGAAGCTCCTTTAGGAGAGCTTATTGATATTCACTATACTGCTAGATTCGCCGATGGAATAGTATTCGATAGTAGTTATAAACGTGCTAGGCCACTCACTATGCGTATTGGTGTTGGCAAGGTAATTAGGGGATTGGATCAGGGAATTTTGGGGGGTGAAGGCGTACCTCCAATGCGGATAGGTGGGAAACGCAAACTCATGATTCCTCCATTGTTAGCGTATGGTCCTGAACCTGCAGGCTGCTTCTCAGGTGACTGCAATATACCGGGCAATGCAACTCTTCTGTATGATATTAAATTTGTTGGTCTTTATTCGGGCAATCGAAGTCAATGA

Protein sequence

>Msa0568120

MALSFSLCSGATVHNRFPSCMKLNGKSYKVSNKVLCSALNGNEKKPLVGIGIGIVAAWVMGLTALDADATRIEYYATVGEPMCELNYVKSGLGYCDYVEGFGDEAPLGELIDIHYTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMRIGGKRKLMIPPLLAYGPEPAGCFSGDCNIPGNATLLYDIKFVGLYSGNRSQ*