Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571440 | XP_003630518.1 | 74.306 | 144 | 4 | 1 | 1 | 111 | 1 | 144 | 8.61e-65 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571440 | sp|Q8LBU2|GPX8_ARATH | 59.124 | 137 | 23 | 1 | 8 | 111 | 3 | 139 | 1.02e-51 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571440 | G7LHZ7 | 74.306 | 144 | 4 | 1 | 1 | 111 | 1 | 144 | 4.11e-65 | 206 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0127650 | Msa0571440 | 0.810486 | 1.125581e-50 | -8.615850e-47 |
| Msa0411190 | Msa0571440 | 0.803678 | 3.107931e-49 | -8.615850e-47 |
| Msa0571440 | Msa0571630 | 0.820772 | 5.748943e-53 | -8.615850e-47 |
| Msa0571440 | Msa0966400 | 0.810290 | 1.240875e-50 | -8.615850e-47 |
| Msa0571440 | Msa1375170 | 0.812637 | 3.835459e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571440 | MtrunA17_Chr8g0386731 | 74.306 | 144 | 4 | 1 | 1 | 111 | 1 | 144 | 7.92e-69 | 206 |
| Msa0571440 | MtrunA17_Chr8g0386721 | 49.640 | 139 | 37 | 1 | 6 | 111 | 2 | 140 | 1.82e-44 | 144 |
| Msa0571440 | MtrunA17_Chr5g0397561 | 46.386 | 166 | 55 | 2 | 5 | 136 | 3 | 168 | 1.02e-40 | 135 |
| Msa0571440 | MtrunA17_Chr8g0391921 | 47.552 | 143 | 42 | 1 | 2 | 111 | 55 | 197 | 3.34e-39 | 133 |
| Msa0571440 | MtrunA17_Chr1g0150061 | 47.222 | 144 | 42 | 2 | 12 | 122 | 77 | 219 | 9.90e-37 | 127 |
| Msa0571440 | MtrunA17_Chr7g0259611 | 45.324 | 139 | 43 | 1 | 6 | 111 | 4 | 142 | 3.36e-35 | 121 |
| Msa0571440 | MtrunA17_Chr1g0185791 | 40.602 | 133 | 45 | 2 | 13 | 111 | 11 | 143 | 3.61e-30 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571440 | AT1G63460.1 | 59.124 | 137 | 23 | 1 | 8 | 111 | 3 | 139 | 1.04e-52 | 166 |
| Msa0571440 | AT4G11600.1 | 56.204 | 137 | 27 | 1 | 8 | 111 | 67 | 203 | 7.32e-49 | 158 |
| Msa0571440 | AT4G31870.1 | 48.611 | 144 | 40 | 2 | 12 | 122 | 74 | 216 | 8.01e-38 | 130 |
| Msa0571440 | AT2G31570.1 | 50.000 | 132 | 33 | 1 | 11 | 109 | 6 | 137 | 6.86e-37 | 125 |
| Msa0571440 | AT2G43350.2 | 43.750 | 144 | 48 | 1 | 2 | 112 | 36 | 179 | 8.48e-35 | 121 |
| Msa0571440 | AT2G43350.1 | 43.750 | 144 | 48 | 1 | 2 | 112 | 36 | 179 | 8.48e-35 | 121 |
| Msa0571440 | AT2G25080.1 | 45.139 | 144 | 45 | 2 | 12 | 122 | 77 | 219 | 1.87e-34 | 121 |
| Msa0571440 | AT3G63080.1 | 41.985 | 131 | 43 | 1 | 14 | 111 | 14 | 144 | 1.33e-31 | 112 |
| Msa0571440 | AT2G48150.1 | 40.288 | 139 | 50 | 1 | 6 | 111 | 4 | 142 | 2.13e-31 | 111 |
| Msa0571440 | AT2G48150.2 | 57.143 | 77 | 33 | 0 | 35 | 111 | 40 | 116 | 2.45e-28 | 103 |
Find 58 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATTAGGCCTTGAGATTC+TGG | 0.187620 | 4_1:+74075651 | Msa0571440:intron |
| GTGAAGTCGTAGACCGATTT+TGG | 0.224009 | 4_1:-74074877 | None:intergenic |
| AATTCTTAAAGTCAGGTAAA+TGG | 0.245816 | 4_1:+74076212 | Msa0571440:CDS |
| AACTCCATTACCACTGTTTC+GGG | 0.246127 | 4_1:+74074772 | Msa0571440:five_prime_UTR |
| GCATTTCCAAGTAATCAATT+TGG | 0.254246 | 4_1:+74075673 | Msa0571440:CDS |
| AAGCAAACATGTTGTCTATA+AGG | 0.304042 | 4_1:-74076626 | None:intergenic |
| TCCTCGCCAAATTGATTACT+TGG | 0.314943 | 4_1:-74075679 | None:intergenic |
| AAACTCCATTACCACTGTTT+CGG | 0.316048 | 4_1:+74074771 | Msa0571440:five_prime_UTR |
| AAAATCCAATATTTGATCAT+TGG | 0.340942 | 4_1:-74075713 | None:intergenic |
| ATTCTTAAAGTCAGGTAAAT+GGG | 0.352395 | 4_1:+74076213 | Msa0571440:CDS |
| CCACTATTACAACTTCAAAA+AGG | 0.353221 | 4_1:-74076569 | None:intergenic |
| ACCGTACTCACTTGACTTGA+TGG | 0.356237 | 4_1:-74074817 | None:intergenic |
| TGGAACCAATGATCAAATAT+TGG | 0.356345 | 4_1:+74075708 | Msa0571440:CDS |
| TTGAATTACCTTATCAAAGA+TGG | 0.358414 | 4_1:-74075764 | None:intergenic |
| ATAGTTAGATGTTATATGAT+TGG | 0.368618 | 4_1:-74076706 | None:intergenic |
| AATATTTGATCATTGGTTCC+AGG | 0.413256 | 4_1:-74075706 | None:intergenic |
| AGAATTCCCCATCTTTGATA+AGG | 0.431153 | 4_1:+74075756 | Msa0571440:CDS |
| CAATTTGGCGAGGAAGAACC+TGG | 0.436830 | 4_1:+74075688 | Msa0571440:CDS |
| TTCCATTCTGCAGGATGGTA+AGG | 0.440621 | 4_1:+74075093 | Msa0571440:intron |
| ATAATTTGAGTTGAGTTGTT+TGG | 0.454132 | 4_1:+74074741 | Msa0571440:five_prime_UTR |
| CAAGTTTCTAGTTGACAAGA+TGG | 0.457048 | 4_1:+74076270 | Msa0571440:CDS |
| TGTTGATCTCGCCACTTACA+AGG | 0.462862 | 4_1:+74075123 | Msa0571440:CDS |
| TGAATTACCTTATCAAAGAT+GGG | 0.470782 | 4_1:-74075763 | None:intergenic |
| TAACAGTAAGGATCCAAAAT+CGG | 0.474969 | 4_1:+74074864 | Msa0571440:CDS |
| CATCTTGTCAACTAGAAACT+TGG | 0.482408 | 4_1:-74076269 | None:intergenic |
| GAGACCCGAAACAGTGGTAA+TGG | 0.493464 | 4_1:-74074776 | None:intergenic |
| TTTGGATCCTTACTGTTACT+GGG | 0.498091 | 4_1:-74074859 | None:intergenic |
| GTGTATAAATTCTTAAAGTC+AGG | 0.502203 | 4_1:+74076205 | Msa0571440:CDS |
| CGAGACATCTGTAAACTACT+TGG | 0.504943 | 4_1:+74076458 | Msa0571440:CDS |
| ATGGATTCAGCTTGGAAAAG+AGG | 0.510743 | 4_1:+74076499 | Msa0571440:CDS |
| TGTGCTAGATTGAAGTGAAT+GGG | 0.521263 | 4_1:+74076167 | Msa0571440:intron |
| GAGGACTTTACCCTTGTAAG+TGG | 0.525139 | 4_1:-74075134 | None:intergenic |
| AAGGCTAAGAGGAGAGGTGG+TGG | 0.529913 | 4_1:-74076316 | None:intergenic |
| CCATGTACCTCAAGGCTAAG+AGG | 0.532425 | 4_1:-74076327 | None:intergenic |
| TCCATTCTGCAGGATGGTAA+GGG | 0.552702 | 4_1:+74075094 | Msa0571440:intron |
| TTGTGCTAGATTGAAGTGAA+TGG | 0.553490 | 4_1:+74076166 | Msa0571440:intron |
| TCCATCAAGTCAAGTGAGTA+CGG | 0.553643 | 4_1:+74074816 | Msa0571440:five_prime_UTR |
| CAGCGAACCCAGTAACAGTA+AGG | 0.563779 | 4_1:+74074852 | Msa0571440:CDS |
| CACCTCTCCTCTTAGCCTTG+AGG | 0.570064 | 4_1:+74076320 | Msa0571440:CDS |
| GTGTTGAATGAATACATACA+TGG | 0.571873 | 4_1:+74076480 | Msa0571440:CDS |
| AGGCTAAGAGGAGAGGTGGT+GGG | 0.578274 | 4_1:-74076315 | None:intergenic |
| ATACATACATGGATTCAGCT+TGG | 0.592578 | 4_1:+74076491 | Msa0571440:CDS |
| CTCAAGGCTAAGAGGAGAGG+TGG | 0.599220 | 4_1:-74076319 | None:intergenic |
| GACTTTAAGAATTTATACAC+GGG | 0.603329 | 4_1:-74076202 | None:intergenic |
| TTCTTAAAGTCAGGTAAATG+GGG | 0.604283 | 4_1:+74076214 | Msa0571440:CDS |
| TTGGAAATGCCAGAATCTCA+AGG | 0.604387 | 4_1:-74075660 | None:intergenic |
| ATTCAGCTTGGAAAAGAGGA+TGG | 0.606734 | 4_1:+74076503 | Msa0571440:CDS |
| GAATTACCTTATCAAAGATG+GGG | 0.609426 | 4_1:-74075762 | None:intergenic |
| TACCTCAAGGCTAAGAGGAG+AGG | 0.624418 | 4_1:-74076322 | None:intergenic |
| GTTGATCTCGCCACTTACAA+GGG | 0.632755 | 4_1:+74075124 | Msa0571440:CDS |
| TTGACAAGATGGTCAAGTGG+TGG | 0.632914 | 4_1:+74076281 | Msa0571440:CDS |
| TCCAAGTAATCAATTTGGCG+AGG | 0.638053 | 4_1:+74075678 | Msa0571440:CDS |
| GGTCTACGACTTCACTCTCA+AGG | 0.640018 | 4_1:+74074885 | Msa0571440:CDS |
| TAGTTGACAAGATGGTCAAG+TGG | 0.643721 | 4_1:+74076278 | Msa0571440:CDS |
| TGACTTTAAGAATTTATACA+CGG | 0.655845 | 4_1:-74076203 | None:intergenic |
| CAAGAAGAGACCCGAAACAG+TGG | 0.661375 | 4_1:-74074782 | None:intergenic |
| GTGCTAGATTGAAGTGAATG+GGG | 0.691263 | 4_1:+74076168 | Msa0571440:intron |
| GTACTCACTTGACTTGATGG+AGG | 0.692832 | 4_1:-74074814 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTATTTTAGCTTATCTAT+TGG | + | chr4_1:74075257-74075276 | Msa0571440:intron | 20.0% |
| !! | AAAATCCAATATTTGATCAT+TGG | - | chr4_1:74075716-74075735 | None:intergenic | 20.0% |
| !!! | TACATATATATCGCAAATTT+TGG | - | chr4_1:74075972-74075991 | None:intergenic | 20.0% |
| !!! | TGACTTTAAGAATTTATACA+CGG | - | chr4_1:74076206-74076225 | None:intergenic | 20.0% |
| !! | TATATCAATATCAATTGACA+TGG | + | chr4_1:74076384-74076403 | Msa0571440:intron | 20.0% |
| !! | ATAGTTAGATGTTATATGAT+TGG | - | chr4_1:74076709-74076728 | None:intergenic | 20.0% |
| !!! | ACTTATTTTAGCTTATCTAT+TGG | + | chr4_1:74075257-74075276 | Msa0571440:intron | 20.0% |
| !! | AAAATCCAATATTTGATCAT+TGG | - | chr4_1:74075716-74075735 | None:intergenic | 20.0% |
| !!! | TACATATATATCGCAAATTT+TGG | - | chr4_1:74075972-74075991 | None:intergenic | 20.0% |
| !!! | TGACTTTAAGAATTTATACA+CGG | - | chr4_1:74076206-74076225 | None:intergenic | 20.0% |
| !! | TATATCAATATCAATTGACA+TGG | + | chr4_1:74076384-74076403 | Msa0571440:intron | 20.0% |
| !! | ATAGTTAGATGTTATATGAT+TGG | - | chr4_1:74076709-74076728 | None:intergenic | 20.0% |
| !!! | ATAATTTGAGTTGAGTTGTT+TGG | + | chr4_1:74074741-74074760 | Msa0571440:five_prime_UTR | 25.0% |
| ! | AACAAAACAAAACAAAACAG+TGG | - | chr4_1:74074987-74075006 | None:intergenic | 25.0% |
| ! | GAAATGAATAAAAGAGAGTA+TGG | - | chr4_1:74075200-74075219 | None:intergenic | 25.0% |
| !! | TTTTTATAAACTATCGAGGA+GGG | - | chr4_1:74075341-74075360 | None:intergenic | 25.0% |
| !! | ATTTTTATAAACTATCGAGG+AGG | - | chr4_1:74075342-74075361 | None:intergenic | 25.0% |
| !!! | GCTATTTTTATAAACTATCG+AGG | - | chr4_1:74075345-74075364 | None:intergenic | 25.0% |
| ! | AAAGAAACACTAATTTGAGT+TGG | - | chr4_1:74075559-74075578 | None:intergenic | 25.0% |
| ! | TCAGGTAAACATGTAATATT+TGG | - | chr4_1:74075599-74075618 | None:intergenic | 25.0% |
| ! | TGAATTACCTTATCAAAGAT+GGG | - | chr4_1:74075766-74075785 | None:intergenic | 25.0% |
| ! | TTGAATTACCTTATCAAAGA+TGG | - | chr4_1:74075767-74075786 | None:intergenic | 25.0% |
| ! | TGAAGATCGATAATTACAAT+TGG | - | chr4_1:74075931-74075950 | None:intergenic | 25.0% |
| !! | GACTTTAAGAATTTATACAC+GGG | - | chr4_1:74076205-74076224 | None:intergenic | 25.0% |
| ! | GTGTATAAATTCTTAAAGTC+AGG | + | chr4_1:74076205-74076224 | Msa0571440:CDS | 25.0% |
| ! | AATTCTTAAAGTCAGGTAAA+TGG | + | chr4_1:74076212-74076231 | Msa0571440:CDS | 25.0% |
| ! | ATTCTTAAAGTCAGGTAAAT+GGG | + | chr4_1:74076213-74076232 | Msa0571440:CDS | 25.0% |
| ! | TTCAAAAAGGAACATTACAA+AGG | - | chr4_1:74076559-74076578 | None:intergenic | 25.0% |
| !!! | ATAATTTGAGTTGAGTTGTT+TGG | + | chr4_1:74074741-74074760 | Msa0571440:five_prime_UTR | 25.0% |
| ! | AACAAAACAAAACAAAACAG+TGG | - | chr4_1:74074987-74075006 | None:intergenic | 25.0% |
| ! | GAAATGAATAAAAGAGAGTA+TGG | - | chr4_1:74075200-74075219 | None:intergenic | 25.0% |
| !! | TTTTTATAAACTATCGAGGA+GGG | - | chr4_1:74075341-74075360 | None:intergenic | 25.0% |
| !! | ATTTTTATAAACTATCGAGG+AGG | - | chr4_1:74075342-74075361 | None:intergenic | 25.0% |
| !!! | GCTATTTTTATAAACTATCG+AGG | - | chr4_1:74075345-74075364 | None:intergenic | 25.0% |
| ! | AAAGAAACACTAATTTGAGT+TGG | - | chr4_1:74075559-74075578 | None:intergenic | 25.0% |
| ! | TCAGGTAAACATGTAATATT+TGG | - | chr4_1:74075599-74075618 | None:intergenic | 25.0% |
| ! | TGAATTACCTTATCAAAGAT+GGG | - | chr4_1:74075766-74075785 | None:intergenic | 25.0% |
| ! | TTGAATTACCTTATCAAAGA+TGG | - | chr4_1:74075767-74075786 | None:intergenic | 25.0% |
| ! | TGAAGATCGATAATTACAAT+TGG | - | chr4_1:74075931-74075950 | None:intergenic | 25.0% |
| !! | GACTTTAAGAATTTATACAC+GGG | - | chr4_1:74076205-74076224 | None:intergenic | 25.0% |
| ! | GTGTATAAATTCTTAAAGTC+AGG | + | chr4_1:74076205-74076224 | Msa0571440:CDS | 25.0% |
| ! | AATTCTTAAAGTCAGGTAAA+TGG | + | chr4_1:74076212-74076231 | Msa0571440:CDS | 25.0% |
| ! | ATTCTTAAAGTCAGGTAAAT+GGG | + | chr4_1:74076213-74076232 | Msa0571440:CDS | 25.0% |
| ! | TTCAAAAAGGAACATTACAA+AGG | - | chr4_1:74076559-74076578 | None:intergenic | 25.0% |
| TAACAGTAAGGATCCAAAAT+CGG | + | chr4_1:74074864-74074883 | Msa0571440:CDS | 30.0% | |
| GAAATGAAAGAGATAGATAG+AGG | - | chr4_1:74074923-74074942 | None:intergenic | 30.0% | |
| ! | TTGTTAATGTTGCTTCCAAA+TGG | + | chr4_1:74075161-74075180 | Msa0571440:intron | 30.0% |
| ! | TGAATAAAAGAGAGTATGGT+CGG | - | chr4_1:74075196-74075215 | None:intergenic | 30.0% |
| ACACATCAATTGACACAATT+TGG | + | chr4_1:74075230-74075249 | Msa0571440:intron | 30.0% | |
| GCTTAAAGTATAAGTGCTTA+CGG | - | chr4_1:74075389-74075408 | None:intergenic | 30.0% | |
| !! | GTTTTCGATTGATTTCATTG+AGG | + | chr4_1:74075443-74075462 | Msa0571440:intron | 30.0% |
| TAACTCCACATAATTTGAGT+TGG | - | chr4_1:74075480-74075499 | None:intergenic | 30.0% | |
| TATGACAAGTACAAACACAA+AGG | + | chr4_1:74075509-74075528 | Msa0571440:intron | 30.0% | |
| ! | ACTGAATTGGTAGCTTAATT+AGG | + | chr4_1:74075637-74075656 | Msa0571440:intron | 30.0% |
| GCATTTCCAAGTAATCAATT+TGG | + | chr4_1:74075673-74075692 | Msa0571440:CDS | 30.0% | |
| !! | AATATTTGATCATTGGTTCC+AGG | - | chr4_1:74075709-74075728 | None:intergenic | 30.0% |
| TGGAACCAATGATCAAATAT+TGG | + | chr4_1:74075708-74075727 | Msa0571440:CDS | 30.0% | |
| GAATTACCTTATCAAAGATG+GGG | - | chr4_1:74075765-74075784 | None:intergenic | 30.0% | |
| TTTCAATTATGTGTTTGCAG+TGG | + | chr4_1:74075852-74075871 | Msa0571440:intron | 30.0% | |
| AACTTATAAGTTCATCTCCA+TGG | + | chr4_1:74076143-74076162 | Msa0571440:intron | 30.0% | |
| TTCTTAAAGTCAGGTAAATG+GGG | + | chr4_1:74076214-74076233 | Msa0571440:CDS | 30.0% | |
| TCAATATCAATTGACATGGA+TGG | + | chr4_1:74076388-74076407 | Msa0571440:intron | 30.0% | |
| GTGTTGAATGAATACATACA+TGG | + | chr4_1:74076480-74076499 | Msa0571440:CDS | 30.0% | |
| CCACTATTACAACTTCAAAA+AGG | - | chr4_1:74076572-74076591 | None:intergenic | 30.0% | |
| !!! | CCTTTTTGAAGTTGTAATAG+TGG | + | chr4_1:74076569-74076588 | Msa0571440:CDS | 30.0% |
| AAGCAAACATGTTGTCTATA+AGG | - | chr4_1:74076629-74076648 | None:intergenic | 30.0% | |
| TAACAGTAAGGATCCAAAAT+CGG | + | chr4_1:74074864-74074883 | Msa0571440:CDS | 30.0% | |
| GAAATGAAAGAGATAGATAG+AGG | - | chr4_1:74074923-74074942 | None:intergenic | 30.0% | |
| ! | TTGTTAATGTTGCTTCCAAA+TGG | + | chr4_1:74075161-74075180 | Msa0571440:intron | 30.0% |
| ! | TGAATAAAAGAGAGTATGGT+CGG | - | chr4_1:74075196-74075215 | None:intergenic | 30.0% |
| ACACATCAATTGACACAATT+TGG | + | chr4_1:74075230-74075249 | Msa0571440:intron | 30.0% | |
| GCTTAAAGTATAAGTGCTTA+CGG | - | chr4_1:74075389-74075408 | None:intergenic | 30.0% | |
| !! | GTTTTCGATTGATTTCATTG+AGG | + | chr4_1:74075443-74075462 | Msa0571440:intron | 30.0% |
| TAACTCCACATAATTTGAGT+TGG | - | chr4_1:74075480-74075499 | None:intergenic | 30.0% | |
| TATGACAAGTACAAACACAA+AGG | + | chr4_1:74075509-74075528 | Msa0571440:intron | 30.0% | |
| ! | ACTGAATTGGTAGCTTAATT+AGG | + | chr4_1:74075637-74075656 | Msa0571440:intron | 30.0% |
| GCATTTCCAAGTAATCAATT+TGG | + | chr4_1:74075673-74075692 | Msa0571440:CDS | 30.0% | |
| !! | AATATTTGATCATTGGTTCC+AGG | - | chr4_1:74075709-74075728 | None:intergenic | 30.0% |
| TGGAACCAATGATCAAATAT+TGG | + | chr4_1:74075708-74075727 | Msa0571440:CDS | 30.0% | |
| GAATTACCTTATCAAAGATG+GGG | - | chr4_1:74075765-74075784 | None:intergenic | 30.0% | |
| TTTCAATTATGTGTTTGCAG+TGG | + | chr4_1:74075852-74075871 | Msa0571440:intron | 30.0% | |
| AACTTATAAGTTCATCTCCA+TGG | + | chr4_1:74076143-74076162 | Msa0571440:intron | 30.0% | |
| TTCTTAAAGTCAGGTAAATG+GGG | + | chr4_1:74076214-74076233 | Msa0571440:CDS | 30.0% | |
| TCAATATCAATTGACATGGA+TGG | + | chr4_1:74076388-74076407 | Msa0571440:intron | 30.0% | |
| GTGTTGAATGAATACATACA+TGG | + | chr4_1:74076480-74076499 | Msa0571440:CDS | 30.0% | |
| CCACTATTACAACTTCAAAA+AGG | - | chr4_1:74076572-74076591 | None:intergenic | 30.0% | |
| !!! | CCTTTTTGAAGTTGTAATAG+TGG | + | chr4_1:74076569-74076588 | Msa0571440:CDS | 30.0% |
| AAGCAAACATGTTGTCTATA+AGG | - | chr4_1:74076629-74076648 | None:intergenic | 30.0% | |
| AAACTCCATTACCACTGTTT+CGG | + | chr4_1:74074771-74074790 | Msa0571440:five_prime_UTR | 35.0% | |
| TTTGGATCCTTACTGTTACT+GGG | - | chr4_1:74074862-74074881 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTTACTGTTAC+TGG | - | chr4_1:74074863-74074882 | None:intergenic | 35.0% |
| ! | AAAGAGATAGATAGAGGCAT+AGG | - | chr4_1:74074917-74074936 | None:intergenic | 35.0% |
| !! | TTTGTTTTCTTCCATTCTGC+AGG | + | chr4_1:74075084-74075103 | Msa0571440:intron | 35.0% |
| AAGCAACATTAACAATGAGG+AGG | - | chr4_1:74075156-74075175 | None:intergenic | 35.0% | |
| TGGAAGCAACATTAACAATG+AGG | - | chr4_1:74075159-74075178 | None:intergenic | 35.0% | |
| CATGACCAACTCAAATTATG+TGG | + | chr4_1:74075472-74075491 | Msa0571440:intron | 35.0% | |
| ATGAGATGAGATGACTGAAT+TGG | + | chr4_1:74075624-74075643 | Msa0571440:intron | 35.0% | |
| TTAATTAGGCCTTGAGATTC+TGG | + | chr4_1:74075651-74075670 | Msa0571440:intron | 35.0% | |
| AGAATTCCCCATCTTTGATA+AGG | + | chr4_1:74075756-74075775 | Msa0571440:CDS | 35.0% | |
| ATTACAGTTCACATTAGCAG+TGG | - | chr4_1:74076004-74076023 | None:intergenic | 35.0% | |
| ! | CTTGACTAGTTGTACTTAGT+TGG | + | chr4_1:74076039-74076058 | Msa0571440:intron | 35.0% |
| TTGTGCTAGATTGAAGTGAA+TGG | + | chr4_1:74076166-74076185 | Msa0571440:intron | 35.0% | |
| TGTGCTAGATTGAAGTGAAT+GGG | + | chr4_1:74076167-74076186 | Msa0571440:intron | 35.0% | |
| ! | TCAGGTAAATGGGGAATTTT+TGG | + | chr4_1:74076223-74076242 | Msa0571440:CDS | 35.0% |
| ! | CAGGTAAATGGGGAATTTTT+GGG | + | chr4_1:74076224-74076243 | Msa0571440:CDS | 35.0% |
| ! | AGGTAAATGGGGAATTTTTG+GGG | + | chr4_1:74076225-74076244 | Msa0571440:CDS | 35.0% |
| !! | TTTTTGGGGATGATATTCAG+TGG | + | chr4_1:74076239-74076258 | Msa0571440:CDS | 35.0% |
| CATCTTGTCAACTAGAAACT+TGG | - | chr4_1:74076272-74076291 | None:intergenic | 35.0% | |
| !! | CAAGTTTCTAGTTGACAAGA+TGG | + | chr4_1:74076270-74076289 | Msa0571440:CDS | 35.0% |
| TGTTGCGTATGTAATTCTTC+TGG | + | chr4_1:74076415-74076434 | Msa0571440:intron | 35.0% | |
| ATACATACATGGATTCAGCT+TGG | + | chr4_1:74076491-74076510 | Msa0571440:CDS | 35.0% | |
| AAACTCCATTACCACTGTTT+CGG | + | chr4_1:74074771-74074790 | Msa0571440:five_prime_UTR | 35.0% | |
| TTTGGATCCTTACTGTTACT+GGG | - | chr4_1:74074862-74074881 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTTACTGTTAC+TGG | - | chr4_1:74074863-74074882 | None:intergenic | 35.0% |
| ! | AAAGAGATAGATAGAGGCAT+AGG | - | chr4_1:74074917-74074936 | None:intergenic | 35.0% |
| !! | TTTGTTTTCTTCCATTCTGC+AGG | + | chr4_1:74075084-74075103 | Msa0571440:intron | 35.0% |
| AAGCAACATTAACAATGAGG+AGG | - | chr4_1:74075156-74075175 | None:intergenic | 35.0% | |
| TGGAAGCAACATTAACAATG+AGG | - | chr4_1:74075159-74075178 | None:intergenic | 35.0% | |
| CATGACCAACTCAAATTATG+TGG | + | chr4_1:74075472-74075491 | Msa0571440:intron | 35.0% | |
| ATGAGATGAGATGACTGAAT+TGG | + | chr4_1:74075624-74075643 | Msa0571440:intron | 35.0% | |
| TTAATTAGGCCTTGAGATTC+TGG | + | chr4_1:74075651-74075670 | Msa0571440:intron | 35.0% | |
| AGAATTCCCCATCTTTGATA+AGG | + | chr4_1:74075756-74075775 | Msa0571440:CDS | 35.0% | |
| ATTACAGTTCACATTAGCAG+TGG | - | chr4_1:74076004-74076023 | None:intergenic | 35.0% | |
| ! | CTTGACTAGTTGTACTTAGT+TGG | + | chr4_1:74076039-74076058 | Msa0571440:intron | 35.0% |
| TTGTGCTAGATTGAAGTGAA+TGG | + | chr4_1:74076166-74076185 | Msa0571440:intron | 35.0% | |
| TGTGCTAGATTGAAGTGAAT+GGG | + | chr4_1:74076167-74076186 | Msa0571440:intron | 35.0% | |
| ! | TCAGGTAAATGGGGAATTTT+TGG | + | chr4_1:74076223-74076242 | Msa0571440:CDS | 35.0% |
| ! | CAGGTAAATGGGGAATTTTT+GGG | + | chr4_1:74076224-74076243 | Msa0571440:CDS | 35.0% |
| ! | AGGTAAATGGGGAATTTTTG+GGG | + | chr4_1:74076225-74076244 | Msa0571440:CDS | 35.0% |
| !! | TTTTTGGGGATGATATTCAG+TGG | + | chr4_1:74076239-74076258 | Msa0571440:CDS | 35.0% |
| CATCTTGTCAACTAGAAACT+TGG | - | chr4_1:74076272-74076291 | None:intergenic | 35.0% | |
| !! | CAAGTTTCTAGTTGACAAGA+TGG | + | chr4_1:74076270-74076289 | Msa0571440:CDS | 35.0% |
| TGTTGCGTATGTAATTCTTC+TGG | + | chr4_1:74076415-74076434 | Msa0571440:intron | 35.0% | |
| ATACATACATGGATTCAGCT+TGG | + | chr4_1:74076491-74076510 | Msa0571440:CDS | 35.0% | |
| AACTCCATTACCACTGTTTC+GGG | + | chr4_1:74074772-74074791 | Msa0571440:five_prime_UTR | 40.0% | |
| TCCATCAAGTCAAGTGAGTA+CGG | + | chr4_1:74074816-74074835 | Msa0571440:five_prime_UTR | 40.0% | |
| ! | TTTTCTTCCATTCTGCAGGA+TGG | + | chr4_1:74075088-74075107 | Msa0571440:intron | 40.0% |
| GGTCGGATATACATACCATT+TGG | - | chr4_1:74075179-74075198 | None:intergenic | 40.0% | |
| ! | GATTGATTTCATTGAGGCAG+TGG | + | chr4_1:74075449-74075468 | Msa0571440:intron | 40.0% |
| CATCTCATCTCATGTGTATC+AGG | - | chr4_1:74075617-74075636 | None:intergenic | 40.0% | |
| TTGGAAATGCCAGAATCTCA+AGG | - | chr4_1:74075663-74075682 | None:intergenic | 40.0% | |
| TCCAAGTAATCAATTTGGCG+AGG | + | chr4_1:74075678-74075697 | Msa0571440:CDS | 40.0% | |
| TCCTCGCCAAATTGATTACT+TGG | - | chr4_1:74075682-74075701 | None:intergenic | 40.0% | |
| ACACTTTGCATTGTTTGCAG+TGG | + | chr4_1:74075883-74075902 | Msa0571440:intron | 40.0% | |
| ACTTCAATCTAGCACAACCA+TGG | - | chr4_1:74076163-74076182 | None:intergenic | 40.0% | |
| GTGCTAGATTGAAGTGAATG+GGG | + | chr4_1:74076168-74076187 | Msa0571440:intron | 40.0% | |
| TAGTTGACAAGATGGTCAAG+TGG | + | chr4_1:74076278-74076297 | Msa0571440:CDS | 40.0% | |
| ATAATGCTCCATGTACCTCA+AGG | - | chr4_1:74076338-74076357 | None:intergenic | 40.0% | |
| CGAGACATCTGTAAACTACT+TGG | + | chr4_1:74076458-74076477 | Msa0571440:CDS | 40.0% | |
| ATGGATTCAGCTTGGAAAAG+AGG | + | chr4_1:74076499-74076518 | Msa0571440:CDS | 40.0% | |
| ATTCAGCTTGGAAAAGAGGA+TGG | + | chr4_1:74076503-74076522 | Msa0571440:CDS | 40.0% | |
| AACTCCATTACCACTGTTTC+GGG | + | chr4_1:74074772-74074791 | Msa0571440:five_prime_UTR | 40.0% | |
| TCCATCAAGTCAAGTGAGTA+CGG | + | chr4_1:74074816-74074835 | Msa0571440:five_prime_UTR | 40.0% | |
| ! | TTTTCTTCCATTCTGCAGGA+TGG | + | chr4_1:74075088-74075107 | Msa0571440:intron | 40.0% |
| GGTCGGATATACATACCATT+TGG | - | chr4_1:74075179-74075198 | None:intergenic | 40.0% | |
| ! | GATTGATTTCATTGAGGCAG+TGG | + | chr4_1:74075449-74075468 | Msa0571440:intron | 40.0% |
| CATCTCATCTCATGTGTATC+AGG | - | chr4_1:74075617-74075636 | None:intergenic | 40.0% | |
| TTGGAAATGCCAGAATCTCA+AGG | - | chr4_1:74075663-74075682 | None:intergenic | 40.0% | |
| TCCAAGTAATCAATTTGGCG+AGG | + | chr4_1:74075678-74075697 | Msa0571440:CDS | 40.0% | |
| TCCTCGCCAAATTGATTACT+TGG | - | chr4_1:74075682-74075701 | None:intergenic | 40.0% | |
| ACACTTTGCATTGTTTGCAG+TGG | + | chr4_1:74075883-74075902 | Msa0571440:intron | 40.0% | |
| ACTTCAATCTAGCACAACCA+TGG | - | chr4_1:74076163-74076182 | None:intergenic | 40.0% | |
| GTGCTAGATTGAAGTGAATG+GGG | + | chr4_1:74076168-74076187 | Msa0571440:intron | 40.0% | |
| TAGTTGACAAGATGGTCAAG+TGG | + | chr4_1:74076278-74076297 | Msa0571440:CDS | 40.0% | |
| ATAATGCTCCATGTACCTCA+AGG | - | chr4_1:74076338-74076357 | None:intergenic | 40.0% | |
| CGAGACATCTGTAAACTACT+TGG | + | chr4_1:74076458-74076477 | Msa0571440:CDS | 40.0% | |
| ATGGATTCAGCTTGGAAAAG+AGG | + | chr4_1:74076499-74076518 | Msa0571440:CDS | 40.0% | |
| ATTCAGCTTGGAAAAGAGGA+TGG | + | chr4_1:74076503-74076522 | Msa0571440:CDS | 40.0% | |
| ! | GTACTCACTTGACTTGATGG+AGG | - | chr4_1:74074817-74074836 | None:intergenic | 45.0% |
| ! | ACCGTACTCACTTGACTTGA+TGG | - | chr4_1:74074820-74074839 | None:intergenic | 45.0% |
| !! | GTGAAGTCGTAGACCGATTT+TGG | - | chr4_1:74074880-74074899 | None:intergenic | 45.0% |
| AAAGCTCACAGACAGAGAGA+GGG | - | chr4_1:74074954-74074973 | None:intergenic | 45.0% | |
| TTCCATTCTGCAGGATGGTA+AGG | + | chr4_1:74075093-74075112 | Msa0571440:intron | 45.0% | |
| TCCATTCTGCAGGATGGTAA+GGG | + | chr4_1:74075094-74075113 | Msa0571440:intron | 45.0% | |
| TGTTGATCTCGCCACTTACA+AGG | + | chr4_1:74075123-74075142 | Msa0571440:CDS | 45.0% | |
| GTTGATCTCGCCACTTACAA+GGG | + | chr4_1:74075124-74075143 | Msa0571440:CDS | 45.0% | |
| GAGGACTTTACCCTTGTAAG+TGG | - | chr4_1:74075137-74075156 | None:intergenic | 45.0% | |
| AACTATCGAGGAGGGCTTAT+AGG | - | chr4_1:74075333-74075352 | None:intergenic | 45.0% | |
| ACAGAGCAAACATAGTGCAG+AGG | - | chr4_1:74075827-74075846 | None:intergenic | 45.0% | |
| TTGACAAGATGGTCAAGTGG+TGG | + | chr4_1:74076281-74076300 | Msa0571440:CDS | 45.0% | |
| ! | GTACTCACTTGACTTGATGG+AGG | - | chr4_1:74074817-74074836 | None:intergenic | 45.0% |
| ! | ACCGTACTCACTTGACTTGA+TGG | - | chr4_1:74074820-74074839 | None:intergenic | 45.0% |
| !! | GTGAAGTCGTAGACCGATTT+TGG | - | chr4_1:74074880-74074899 | None:intergenic | 45.0% |
| AAAGCTCACAGACAGAGAGA+GGG | - | chr4_1:74074954-74074973 | None:intergenic | 45.0% | |
| TTCCATTCTGCAGGATGGTA+AGG | + | chr4_1:74075093-74075112 | Msa0571440:intron | 45.0% | |
| TCCATTCTGCAGGATGGTAA+GGG | + | chr4_1:74075094-74075113 | Msa0571440:intron | 45.0% | |
| TGTTGATCTCGCCACTTACA+AGG | + | chr4_1:74075123-74075142 | Msa0571440:CDS | 45.0% | |
| GTTGATCTCGCCACTTACAA+GGG | + | chr4_1:74075124-74075143 | Msa0571440:CDS | 45.0% | |
| GAGGACTTTACCCTTGTAAG+TGG | - | chr4_1:74075137-74075156 | None:intergenic | 45.0% | |
| AACTATCGAGGAGGGCTTAT+AGG | - | chr4_1:74075333-74075352 | None:intergenic | 45.0% | |
| ACAGAGCAAACATAGTGCAG+AGG | - | chr4_1:74075827-74075846 | None:intergenic | 45.0% | |
| TTGACAAGATGGTCAAGTGG+TGG | + | chr4_1:74076281-74076300 | Msa0571440:CDS | 45.0% | |
| GAGACCCGAAACAGTGGTAA+TGG | - | chr4_1:74074779-74074798 | None:intergenic | 50.0% | |
| CAAGAAGAGACCCGAAACAG+TGG | - | chr4_1:74074785-74074804 | None:intergenic | 50.0% | |
| CAGCGAACCCAGTAACAGTA+AGG | + | chr4_1:74074852-74074871 | Msa0571440:CDS | 50.0% | |
| GGTCTACGACTTCACTCTCA+AGG | + | chr4_1:74074885-74074904 | Msa0571440:CDS | 50.0% | |
| GAAAGCTCACAGACAGAGAG+AGG | - | chr4_1:74074955-74074974 | None:intergenic | 50.0% | |
| TCCCTTACCATCCTGCAGAA+TGG | - | chr4_1:74075098-74075117 | None:intergenic | 50.0% | |
| CAATTTGGCGAGGAAGAACC+TGG | + | chr4_1:74075688-74075707 | Msa0571440:CDS | 50.0% | |
| TACCTCAAGGCTAAGAGGAG+AGG | - | chr4_1:74076325-74076344 | None:intergenic | 50.0% | |
| CCATGTACCTCAAGGCTAAG+AGG | - | chr4_1:74076330-74076349 | None:intergenic | 50.0% | |
| !! | CCTCTTAGCCTTGAGGTACA+TGG | + | chr4_1:74076327-74076346 | Msa0571440:intron | 50.0% |
| GAGACCCGAAACAGTGGTAA+TGG | - | chr4_1:74074779-74074798 | None:intergenic | 50.0% | |
| CAAGAAGAGACCCGAAACAG+TGG | - | chr4_1:74074785-74074804 | None:intergenic | 50.0% | |
| CAGCGAACCCAGTAACAGTA+AGG | + | chr4_1:74074852-74074871 | Msa0571440:CDS | 50.0% | |
| GGTCTACGACTTCACTCTCA+AGG | + | chr4_1:74074885-74074904 | Msa0571440:CDS | 50.0% | |
| GAAAGCTCACAGACAGAGAG+AGG | - | chr4_1:74074955-74074974 | None:intergenic | 50.0% | |
| TCCCTTACCATCCTGCAGAA+TGG | - | chr4_1:74075098-74075117 | None:intergenic | 50.0% | |
| CAATTTGGCGAGGAAGAACC+TGG | + | chr4_1:74075688-74075707 | Msa0571440:CDS | 50.0% | |
| TACCTCAAGGCTAAGAGGAG+AGG | - | chr4_1:74076325-74076344 | None:intergenic | 50.0% | |
| CCATGTACCTCAAGGCTAAG+AGG | - | chr4_1:74076330-74076349 | None:intergenic | 50.0% | |
| !! | CCTCTTAGCCTTGAGGTACA+TGG | + | chr4_1:74076327-74076346 | Msa0571440:intron | 50.0% |
| CTCACAGACAGAGAGAGGGA+AGG | - | chr4_1:74074950-74074969 | None:intergenic | 55.0% | |
| AGGCTAAGAGGAGAGGTGGT+GGG | - | chr4_1:74076318-74076337 | None:intergenic | 55.0% | |
| AAGGCTAAGAGGAGAGGTGG+TGG | - | chr4_1:74076319-74076338 | None:intergenic | 55.0% | |
| CTCAAGGCTAAGAGGAGAGG+TGG | - | chr4_1:74076322-74076341 | None:intergenic | 55.0% | |
| !! | CACCTCTCCTCTTAGCCTTG+AGG | + | chr4_1:74076320-74076339 | Msa0571440:CDS | 55.0% |
| CTCACAGACAGAGAGAGGGA+AGG | - | chr4_1:74074950-74074969 | None:intergenic | 55.0% | |
| AGGCTAAGAGGAGAGGTGGT+GGG | - | chr4_1:74076318-74076337 | None:intergenic | 55.0% | |
| AAGGCTAAGAGGAGAGGTGG+TGG | - | chr4_1:74076319-74076338 | None:intergenic | 55.0% | |
| CTCAAGGCTAAGAGGAGAGG+TGG | - | chr4_1:74076322-74076341 | None:intergenic | 55.0% | |
| !! | CACCTCTCCTCTTAGCCTTG+AGG | + | chr4_1:74076320-74076339 | Msa0571440:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 74074741 | 74076755 | 74074741 | ID=Msa0571440;Name=Msa0571440 |
| chr4_1 | mRNA | 74074741 | 74076755 | 74074741 | ID=Msa0571440-mRNA-1;Parent=Msa0571440;Name=Msa0571440-mRNA-1;_AED=0.39;_eAED=0.39;_QI=106|0.75|0.8|1|0.5|0.8|5|159|174 |
| chr4_1 | exon | 74074741 | 74074906 | 74074741 | ID=Msa0571440-mRNA-1:exon:25436;Parent=Msa0571440-mRNA-1 |
| chr4_1 | exon | 74075106 | 74075145 | 74075106 | ID=Msa0571440-mRNA-1:exon:25437;Parent=Msa0571440-mRNA-1 |
| chr4_1 | exon | 74075659 | 74075777 | 74075659 | ID=Msa0571440-mRNA-1:exon:25438;Parent=Msa0571440-mRNA-1 |
| chr4_1 | exon | 74076175 | 74076341 | 74076175 | ID=Msa0571440-mRNA-1:exon:25439;Parent=Msa0571440-mRNA-1 |
| chr4_1 | exon | 74076458 | 74076755 | 74076458 | ID=Msa0571440-mRNA-1:exon:25440;Parent=Msa0571440-mRNA-1 |
| chr4_1 | five_prime_UTR | 74074741 | 74074846 | 74074741 | ID=Msa0571440-mRNA-1:five_prime_utr;Parent=Msa0571440-mRNA-1 |
| chr4_1 | CDS | 74074847 | 74074906 | 74074847 | ID=Msa0571440-mRNA-1:cds;Parent=Msa0571440-mRNA-1 |
| chr4_1 | CDS | 74075106 | 74075145 | 74075106 | ID=Msa0571440-mRNA-1:cds;Parent=Msa0571440-mRNA-1 |
| chr4_1 | CDS | 74075659 | 74075777 | 74075659 | ID=Msa0571440-mRNA-1:cds;Parent=Msa0571440-mRNA-1 |
| chr4_1 | CDS | 74076175 | 74076341 | 74076175 | ID=Msa0571440-mRNA-1:cds;Parent=Msa0571440-mRNA-1 |
| chr4_1 | CDS | 74076458 | 74076596 | 74076458 | ID=Msa0571440-mRNA-1:cds;Parent=Msa0571440-mRNA-1 |
| chr4_1 | three_prime_UTR | 74076597 | 74076755 | 74076597 | ID=Msa0571440-mRNA-1:three_prime_utr;Parent=Msa0571440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
