AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127650 MtrunA17_Chr1g0191241 99.495 198 1 0 7 204 100 297 5.04e-143 400
Msa0127650 MtrunA17_Chr4g0061391 62.500 200 73 1 7 204 87 286 2.65e-80 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127650 AT3G05010.1 72.727 198 54 0 7 204 103 300 5.67e-107 309
Msa0127650 AT5G27210.1 71.212 198 57 0 7 204 100 297 1.22e-100 293

Find 79 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCTAAATTTAGAATT+AGG 0.096517 1_3:+57111317 Msa0127650:five_prime_UTR
TTGTCCTTGTTTACTTCTTC+TGG 0.137493 1_3:+57112427 Msa0127650:CDS
TTCTTCTGGAATGCTGTTTC+TGG 0.158996 1_3:+57112441 Msa0127650:CDS
GTGCGAGAAATTCTTGGTTT+TGG 0.217197 1_3:-57111361 None:intergenic
AAAACCCTAATTCTAAATTT+AGG 0.221899 1_3:-57111322 None:intergenic
TCGCTTGTATATCCTATTTC+GGG 0.232882 1_3:+57113460 Msa0127650:three_prime_UTR
CTCGTGCTCACCGTTGTTTA+TGG 0.242634 1_3:+57112749 Msa0127650:CDS
TATTGTTCATGTATCATTCT+AGG 0.242876 1_3:+57112777 Msa0127650:CDS
ACTGGAAACGGCGCTGGTTT+TGG 0.246426 1_3:+57112975 Msa0127650:CDS
ACTGCTGTATATTACATTTC+TGG 0.250927 1_3:+57113136 Msa0127650:CDS
CTATATATCTATTTGCATTT+GGG 0.257819 1_3:+57112657 Msa0127650:CDS
TTGTTTGCTTGCGGGCTTAC+TGG 0.258766 1_3:+57112957 Msa0127650:CDS
CCATTTGTGCGAGAAATTCT+TGG 0.258968 1_3:-57111367 None:intergenic
TTCACCTAAATTTAGAATTA+GGG 0.270715 1_3:+57111318 Msa0127650:five_prime_UTR
ATCGCTTGTATATCCTATTT+CGG 0.271322 1_3:+57113459 Msa0127650:three_prime_UTR
TCTAAATTTAGGTGAAGAAT+TGG 0.276391 1_3:-57111311 None:intergenic
CAATTGCATTGTTTGCTTGC+GGG 0.288884 1_3:+57112949 Msa0127650:CDS
GCTATATATCTATTTGCATT+TGG 0.295526 1_3:+57112656 Msa0127650:CDS
ACAAAAGAATTACCTTTAAC+AGG 0.300915 1_3:-57112567 None:intergenic
TCGTGCTCACCGTTGTTTAT+GGG 0.323009 1_3:+57112750 Msa0127650:CDS
ATACAGCAGTGGAAGATAAA+AGG 0.326151 1_3:-57113123 None:intergenic
TGGAATCGATGGAGAAAATA+AGG 0.331613 1_3:-57111291 None:intergenic
GTTCCATGTTAGCTCTTTCC+AGG 0.334421 1_3:-57112401 None:intergenic
TTGATTATTCACGACGACTA+TGG 0.343314 1_3:-57111134 None:intergenic
GTTTCTGGAAGTGAGCTTGC+TGG 0.348925 1_3:+57112456 Msa0127650:CDS
GAAGATTCTTCTTCTTCTAC+TGG 0.367957 1_3:+57111419 Msa0127650:five_prime_UTR
CAGGCATGGGAGTGCACTCC+TGG 0.378174 1_3:+57112383 Msa0127650:intron
TTTCGTATTATGCTTCTCTT+TGG 0.381366 1_3:+57111600 Msa0127650:five_prime_UTR
GAAGCATTGACACGAACTTT+TGG 0.389803 1_3:+57112514 Msa0127650:CDS
GGTATATCCGGTATCATTGT+TGG 0.395818 1_3:+57112535 Msa0127650:CDS
GTCCTCTATATACTAATTGC+AGG 0.397111 1_3:+57113389 Msa0127650:three_prime_UTR
CGGTGGTCGTAATCTGATAA+AGG 0.405780 1_3:-57113531 None:intergenic
CCAAGAATTTCTCGCACAAA+TGG 0.414360 1_3:+57111367 Msa0127650:five_prime_UTR
GAGGAGAGTAGAATTTACTA+TGG 0.436023 1_3:-57111033 None:intergenic
TCGCTTGAAGTGGAACTTGT+GGG 0.460605 1_3:+57112715 Msa0127650:CDS
TAACAAAGGGATTCACCGAT+TGG 0.465604 1_3:+57111447 Msa0127650:five_prime_UTR
TACTCTGAAATGAAAGATGC+TGG 0.469422 1_3:+57113310 Msa0127650:CDS
AACAAAGGGATTCACCGATT+GGG 0.473818 1_3:+57111448 Msa0127650:five_prime_UTR
GATCAGTGTCGATGAACAAC+GGG 0.476434 1_3:-57112682 None:intergenic
GGGCTTACTGGAAACGGCGC+TGG 0.478494 1_3:+57112969 Msa0127650:CDS
GATGTTGAAGAGATTAGTTA+CGG 0.484170 1_3:-57111250 None:intergenic
GCTTGCGGGCTTACTGGAAA+CGG 0.488027 1_3:+57112963 Msa0127650:CDS
TTAGCATTCTCAATCTCGCT+TGG 0.494748 1_3:+57111627 Msa0127650:five_prime_UTR
ATCAAAACCAACAATGATAC+CGG 0.504747 1_3:-57112542 None:intergenic
GCAATTGCATTGTTTGCTTG+CGG 0.512576 1_3:+57112948 Msa0127650:CDS
CTCGCTTGAAGTGGAACTTG+TGG 0.521442 1_3:+57112714 Msa0127650:CDS
TATATATCTATTTGCATTTG+GGG 0.524806 1_3:+57112658 Msa0127650:CDS
AGGTGAAGAATTGGAATCGA+TGG 0.533879 1_3:-57111302 None:intergenic
TTGTTCATCGACACTGATCA+TGG 0.535592 1_3:+57112686 Msa0127650:CDS
CAACGGTGAGCACGAGCTTG+TGG 0.536256 1_3:-57112742 None:intergenic
GTCCTGCAATTAGTATATAG+AGG 0.539923 1_3:-57113391 None:intergenic
ATCATTCTAGGTGGAGAGAA+AGG 0.546944 1_3:+57112789 Msa0127650:CDS
TATAAAAGATAAAATAGCAA+TGG 0.552291 1_3:-57111057 None:intergenic
ATGGTACTCCTCGCTTGAAG+TGG 0.567386 1_3:+57112705 Msa0127650:CDS
TAAAGGCAATCAAACACTAC+AGG 0.569497 1_3:-57113514 None:intergenic
AAGATAAAATAGCAATGGAG+AGG 0.575276 1_3:-57111052 None:intergenic
CTTCAGGGAAATAATGCAAG+TGG 0.588641 1_3:+57112487 Msa0127650:CDS
GTGACACTCGAAAACCCAAT+CGG 0.591095 1_3:-57111462 None:intergenic
TATCAGATTACGACCACCGC+GGG 0.591316 1_3:+57113535 Msa0127650:three_prime_UTR
AGGTGGAGAGAAAGGTTACC+CGG 0.604674 1_3:+57112797 Msa0127650:CDS
ATCGGTGCTATCAATAACAA+AGG 0.618733 1_3:+57111397 Msa0127650:five_prime_UTR
CATTCCAGAAGAAGTAAACA+AGG 0.620907 1_3:-57112431 None:intergenic
CACAAGTTCCACTTCAAGCG+AGG 0.621744 1_3:-57112713 None:intergenic
TATGATATAAGAGCGACCAT+TGG 0.623291 1_3:-57111576 None:intergenic
TGATCAGTGTCGATGAACAA+CGG 0.625959 1_3:-57112683 None:intergenic
ATAACATACTTGTAAAACGC+AGG 0.629597 1_3:-57112906 None:intergenic
CGCTTGTATATCCTATTTCG+GGG 0.629906 1_3:+57113461 Msa0127650:three_prime_UTR
GCAGTGGAAGATAAAAGGCA+TGG 0.634056 1_3:-57113118 None:intergenic
ACTCCTGGAAAGAGCTAACA+TGG 0.636598 1_3:+57112398 Msa0127650:CDS
AGGCAATCAAACACTACAGG+AGG 0.650211 1_3:-57113511 None:intergenic
TGTTCATGTATCATTCTAGG+TGG 0.650713 1_3:+57112780 Msa0127650:CDS
AGAAATGTAATATACAGCAG+TGG 0.653445 1_3:-57113134 None:intergenic
TAGAATTTACTATGGACAGA+CGG 0.654445 1_3:-57111025 None:intergenic
ACGACGACTATGGTTAAAGT+CGG 0.673621 1_3:-57111124 None:intergenic
GAATCAGACTGGGAGTGACG+TGG 0.679586 1_3:+57113340 Msa0127650:exon
CAATATGAGCCCATAAACAA+CGG 0.679882 1_3:-57112759 None:intergenic
AAAATAAATGTAACCCGCGG+TGG 0.693404 1_3:-57113548 None:intergenic
TCTAAAATAAATGTAACCCG+CGG 0.699658 1_3:-57113551 None:intergenic
TTATCAGATTACGACCACCG+CGG 0.792310 1_3:+57113534 Msa0127650:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAGATAAAATAGCAA+TGG - chr1_3:57111060-57111079 None:intergenic 15.0%
!!! TGATTGATTTTGATTATGTT+TGG - chr1_3:57111188-57111207 None:intergenic 20.0%
!!! TTCACCTAAATTTAGAATTA+GGG + chr1_3:57111318-57111337 Msa0127650:five_prime_UTR 20.0%
!! AAAACCCTAATTCTAAATTT+AGG - chr1_3:57111325-57111344 None:intergenic 20.0%
!!! CTTGTTTCATTTTTATTTCA+AGG + chr1_3:57111678-57111697 Msa0127650:intron 20.0%
!! AATTAAGCTGTTTATCTAAA+TGG + chr1_3:57111786-57111805 Msa0127650:intron 20.0%
!! CTATATATCTATTTGCATTT+GGG + chr1_3:57112657-57112676 Msa0127650:CDS 20.0%
!! TATATATCTATTTGCATTTG+GGG + chr1_3:57112658-57112677 Msa0127650:CDS 20.0%
!!! ATGTTTGGTTTGTTTTTCTT+GGG - chr1_3:57111173-57111192 None:intergenic 25.0%
!!! TATGTTTGGTTTGTTTTTCT+TGG - chr1_3:57111174-57111193 None:intergenic 25.0%
! TCTAAATTTAGGTGAAGAAT+TGG - chr1_3:57111314-57111333 None:intergenic 25.0%
!! CTTCACCTAAATTTAGAATT+AGG + chr1_3:57111317-57111336 Msa0127650:five_prime_UTR 25.0%
!! TTATCTAAATGGACTTAGTT+AGG + chr1_3:57111797-57111816 Msa0127650:intron 25.0%
!! TATCTAAATGGACTTAGTTA+GGG + chr1_3:57111798-57111817 Msa0127650:intron 25.0%
! AATAAGCTGAAAACATCTTA+TGG - chr1_3:57111916-57111935 None:intergenic 25.0%
!! TAGATTTTCATAAGCTATCT+TGG - chr1_3:57111951-57111970 None:intergenic 25.0%
! AAGATAGCTTATGAAAATCT+AGG + chr1_3:57111950-57111969 Msa0127650:intron 25.0%
! TTAGAGAACATATGTTCTTA+TGG + chr1_3:57112121-57112140 Msa0127650:intron 25.0%
!! ATTGAGTTGTATATCTAAAC+AGG + chr1_3:57112186-57112205 Msa0127650:intron 25.0%
!! TTGAGTTGTATATCTAAACA+GGG + chr1_3:57112187-57112206 Msa0127650:intron 25.0%
! ACAAAAGAATTACCTTTAAC+AGG - chr1_3:57112570-57112589 None:intergenic 25.0%
! GCTATATATCTATTTGCATT+TGG + chr1_3:57112656-57112675 Msa0127650:CDS 25.0%
! TATTGTTCATGTATCATTCT+AGG + chr1_3:57112777-57112796 Msa0127650:CDS 25.0%
!!! TAGTTCTGAACTTTATTCTT+TGG + chr1_3:57113031-57113050 Msa0127650:intron 25.0%
! ATTGTTCTTCTTTGTATTAC+AGG + chr1_3:57113258-57113277 Msa0127650:intron 25.0%
TAGAATTTACTATGGACAGA+CGG - chr1_3:57111028-57111047 None:intergenic 30.0%
AAGATAAAATAGCAATGGAG+AGG - chr1_3:57111055-57111074 None:intergenic 30.0%
! GATGTTGAAGAGATTAGTTA+CGG - chr1_3:57111253-57111272 None:intergenic 30.0%
!!! AATTCTTGGTTTTGGGAAAA+GGG - chr1_3:57111356-57111375 None:intergenic 30.0%
!!! AAATTCTTGGTTTTGGGAAA+AGG - chr1_3:57111357-57111376 None:intergenic 30.0%
!! TTCTACTGGAGTTTTAACAA+AGG + chr1_3:57111433-57111452 Msa0127650:five_prime_UTR 30.0%
!! TCTACTGGAGTTTTAACAAA+GGG + chr1_3:57111434-57111453 Msa0127650:five_prime_UTR 30.0%
TTTCGTATTATGCTTCTCTT+TGG + chr1_3:57111600-57111619 Msa0127650:five_prime_UTR 30.0%
AGAAAGAAAGAATGAAACCT+GGG - chr1_3:57111660-57111679 None:intergenic 30.0%
AAGAAAGAAAGAATGAAACC+TGG - chr1_3:57111661-57111680 None:intergenic 30.0%
TATACAATGACATAAGCATG+AGG + chr1_3:57111847-57111866 Msa0127650:intron 30.0%
! TTATATCCTTTTTCTCCCTT+TGG + chr1_3:57112337-57112356 Msa0127650:intron 30.0%
ATTTGTTCTGGTGATAATTC+AGG + chr1_3:57112364-57112383 Msa0127650:intron 30.0%
ATCAAAACCAACAATGATAC+CGG - chr1_3:57112545-57112564 None:intergenic 30.0%
! CTGGTTATGTATGATTAGTT+TGG + chr1_3:57112618-57112637 Msa0127650:intron 30.0%
AATCCCTACAATTAACTTAC+CGG - chr1_3:57112819-57112838 None:intergenic 30.0%
ATAACATACTTGTAAAACGC+AGG - chr1_3:57112909-57112928 None:intergenic 30.0%
AGAAATGTAATATACAGCAG+TGG - chr1_3:57113137-57113156 None:intergenic 30.0%
ACTGCTGTATATTACATTTC+TGG + chr1_3:57113136-57113155 Msa0127650:CDS 30.0%
TTACAATGCGCTTTACTTTA+TGG + chr1_3:57113174-57113193 Msa0127650:intron 30.0%
ATGCAGTATTGTTTGTAGTT+TGG + chr1_3:57113224-57113243 Msa0127650:intron 30.0%
ATCGCTTGTATATCCTATTT+CGG + chr1_3:57113459-57113478 Msa0127650:three_prime_UTR 30.0%
!!! TTTTTTTTCTTCCCCGAAAT+AGG - chr1_3:57113475-57113494 None:intergenic 30.0%
! TCTAAAATAAATGTAACCCG+CGG - chr1_3:57113554-57113573 None:intergenic 30.0%
GAGGAGAGTAGAATTTACTA+TGG - chr1_3:57111036-57111055 None:intergenic 35.0%
TTGATTATTCACGACGACTA+TGG - chr1_3:57111137-57111156 None:intergenic 35.0%
! TGTTTTTCTTGGGTGAGTTT+TGG - chr1_3:57111163-57111182 None:intergenic 35.0%
TGGAATCGATGGAGAAAATA+AGG - chr1_3:57111294-57111313 None:intergenic 35.0%
!! TGCGAGAAATTCTTGGTTTT+GGG - chr1_3:57111363-57111382 None:intergenic 35.0%
CGCACAAATGGTTGAAAAAT+CGG + chr1_3:57111379-57111398 Msa0127650:five_prime_UTR 35.0%
!! ATCGGTGCTATCAATAACAA+AGG + chr1_3:57111397-57111416 Msa0127650:five_prime_UTR 35.0%
GAAGATTCTTCTTCTTCTAC+TGG + chr1_3:57111419-57111438 Msa0127650:five_prime_UTR 35.0%
! AGCTTTTACAAACTCACCAA+TGG + chr1_3:57111560-57111579 Msa0127650:five_prime_UTR 35.0%
TATGATATAAGAGCGACCAT+TGG - chr1_3:57111579-57111598 None:intergenic 35.0%
AAAATCTAGGTAGTCAATCC+CGG + chr1_3:57111963-57111982 Msa0127650:intron 35.0%
AACTAGAATAGCAGCAACTA+AGG - chr1_3:57112213-57112232 None:intergenic 35.0%
ATTCAACCAAAGGGAGAAAA+AGG - chr1_3:57112346-57112365 None:intergenic 35.0%
CCAGAACAAATTCAACCAAA+GGG - chr1_3:57112355-57112374 None:intergenic 35.0%
ACCAGAACAAATTCAACCAA+AGG - chr1_3:57112356-57112375 None:intergenic 35.0%
! TTGTCCTTGTTTACTTCTTC+TGG + chr1_3:57112427-57112446 Msa0127650:CDS 35.0%
CATTCCAGAAGAAGTAAACA+AGG - chr1_3:57112434-57112453 None:intergenic 35.0%
!!! TTGCTGGCTTTTTTACTTCA+GGG + chr1_3:57112472-57112491 Msa0127650:CDS 35.0%
! ACACGAACTTTTGGTATATC+CGG + chr1_3:57112523-57112542 Msa0127650:CDS 35.0%
!!! TGGTTTTGATGTCCTGTTAA+AGG + chr1_3:57112555-57112574 Msa0127650:CDS 35.0%
ATATTTCATTGTCCTTGTGC+TGG + chr1_3:57112599-57112618 Msa0127650:intron 35.0%
AATCATACATAACCAGCACA+AGG - chr1_3:57112614-57112633 None:intergenic 35.0%
! AGTTTGGCGTTTTCTTTGTT+AGG + chr1_3:57112634-57112653 Msa0127650:intron 35.0%
CAATATGAGCCCATAAACAA+CGG - chr1_3:57112762-57112781 None:intergenic 35.0%
TGTTCATGTATCATTCTAGG+TGG + chr1_3:57112780-57112799 Msa0127650:CDS 35.0%
TTACCCGGTAAGTTAATTGT+AGG + chr1_3:57112812-57112831 Msa0127650:intron 35.0%
TACCCGGTAAGTTAATTGTA+GGG + chr1_3:57112813-57112832 Msa0127650:intron 35.0%
ATCCCTACAATTAACTTACC+GGG - chr1_3:57112818-57112837 None:intergenic 35.0%
CTGTGTTTACTTTATCTCAC+AGG + chr1_3:57113069-57113088 Msa0127650:intron 35.0%
ATACAGCAGTGGAAGATAAA+AGG - chr1_3:57113126-57113145 None:intergenic 35.0%
!!! ATTTCTGGCAGACTTTTTTC+AGG + chr1_3:57113151-57113170 Msa0127650:CDS 35.0%
ACAAAGAAGAACAATCAGTC+AGG - chr1_3:57113253-57113272 None:intergenic 35.0%
GTTCTTCTTTGTATTACAGG+AGG + chr1_3:57113261-57113280 Msa0127650:intron 35.0%
!! TACTCTGAAATGAAAGATGC+TGG + chr1_3:57113310-57113329 Msa0127650:CDS 35.0%
!!! TGGTTTTTTCGAATCAGACT+GGG + chr1_3:57113330-57113349 Msa0127650:CDS 35.0%
GTCCTCTATATACTAATTGC+AGG + chr1_3:57113389-57113408 Msa0127650:three_prime_UTR 35.0%
GTCCTGCAATTAGTATATAG+AGG - chr1_3:57113394-57113413 None:intergenic 35.0%
TCGCTTGTATATCCTATTTC+GGG + chr1_3:57113460-57113479 Msa0127650:three_prime_UTR 35.0%
TAAAGGCAATCAAACACTAC+AGG - chr1_3:57113517-57113536 None:intergenic 35.0%
ACGACGACTATGGTTAAAGT+CGG - chr1_3:57111127-57111146 None:intergenic 40.0%
AGGTGAAGAATTGGAATCGA+TGG - chr1_3:57111305-57111324 None:intergenic 40.0%
! GTGCGAGAAATTCTTGGTTT+TGG - chr1_3:57111364-57111383 None:intergenic 40.0%
CCATTTGTGCGAGAAATTCT+TGG - chr1_3:57111370-57111389 None:intergenic 40.0%
CCAAGAATTTCTCGCACAAA+TGG + chr1_3:57111367-57111386 Msa0127650:five_prime_UTR 40.0%
TAACAAAGGGATTCACCGAT+TGG + chr1_3:57111447-57111466 Msa0127650:five_prime_UTR 40.0%
! AACAAAGGGATTCACCGATT+GGG + chr1_3:57111448-57111467 Msa0127650:five_prime_UTR 40.0%
TTAGCATTCTCAATCTCGCT+TGG + chr1_3:57111627-57111646 Msa0127650:five_prime_UTR 40.0%
ACATAAGCATGAGGCTGTTT+GGG + chr1_3:57111856-57111875 Msa0127650:intron 40.0%
! CCCTTTGGTTGAATTTGTTC+TGG + chr1_3:57112352-57112371 Msa0127650:intron 40.0%
TTCTGGTGATAATTCAGGCA+TGG + chr1_3:57112369-57112388 Msa0127650:intron 40.0%
TCTGGTGATAATTCAGGCAT+GGG + chr1_3:57112370-57112389 Msa0127650:intron 40.0%
!! TTCTTCTGGAATGCTGTTTC+TGG + chr1_3:57112441-57112460 Msa0127650:CDS 40.0%
!!! CTTGCTGGCTTTTTTACTTC+AGG + chr1_3:57112471-57112490 Msa0127650:CDS 40.0%
CTTCAGGGAAATAATGCAAG+TGG + chr1_3:57112487-57112506 Msa0127650:CDS 40.0%
!!! GAAGCATTGACACGAACTTT+TGG + chr1_3:57112514-57112533 Msa0127650:CDS 40.0%
GGTATATCCGGTATCATTGT+TGG + chr1_3:57112535-57112554 Msa0127650:CDS 40.0%
!! TGATCAGTGTCGATGAACAA+CGG - chr1_3:57112686-57112705 None:intergenic 40.0%
TTGTTCATCGACACTGATCA+TGG + chr1_3:57112686-57112705 Msa0127650:CDS 40.0%
ATCATTCTAGGTGGAGAGAA+AGG + chr1_3:57112789-57112808 Msa0127650:CDS 40.0%
GCAATTGCATTGTTTGCTTG+CGG + chr1_3:57112948-57112967 Msa0127650:CDS 40.0%
CAATTGCATTGTTTGCTTGC+GGG + chr1_3:57112949-57112968 Msa0127650:CDS 40.0%
! ACAGGAGGAAGATTTTCACA+TGG + chr1_3:57113276-57113295 Msa0127650:intron 40.0%
!!! CTGGTTTTTTCGAATCAGAC+TGG + chr1_3:57113329-57113348 Msa0127650:CDS 40.0%
CGCTTGTATATCCTATTTCG+GGG + chr1_3:57113461-57113480 Msa0127650:three_prime_UTR 40.0%
AAAATAAATGTAACCCGCGG+TGG - chr1_3:57113551-57113570 None:intergenic 40.0%
GTGACACTCGAAAACCCAAT+CGG - chr1_3:57111465-57111484 None:intergenic 45.0%
!!! GATTGGGTTTTCGAGTGTCA+CGG + chr1_3:57111464-57111483 Msa0127650:five_prime_UTR 45.0%
!!! ATTGGGTTTTCGAGTGTCAC+GGG + chr1_3:57111465-57111484 Msa0127650:five_prime_UTR 45.0%
!!! TTTTCGAGTGTCACGGGTTT+TGG + chr1_3:57111471-57111490 Msa0127650:five_prime_UTR 45.0%
GGACTTAGTTAGGGTCTGTT+TGG + chr1_3:57111807-57111826 Msa0127650:intron 45.0%
GACATAAGCATGAGGCTGTT+TGG + chr1_3:57111855-57111874 Msa0127650:intron 45.0%
CATAAGCATGAGGCTGTTTG+GGG + chr1_3:57111857-57111876 Msa0127650:intron 45.0%
ATAAGCATGAGGCTGTTTGG+GGG + chr1_3:57111858-57111877 Msa0127650:intron 45.0%
!! ATCCCGTTATCCCACTTTTG+GGG - chr1_3:57112000-57112019 None:intergenic 45.0%
!! GATCCCGTTATCCCACTTTT+GGG - chr1_3:57112001-57112020 None:intergenic 45.0%
AATCCATCCTTTGCAATCCC+CGG - chr1_3:57112040-57112059 None:intergenic 45.0%
ACTCCTGGAAAGAGCTAACA+TGG + chr1_3:57112398-57112417 Msa0127650:CDS 45.0%
! GTTCCATGTTAGCTCTTTCC+AGG - chr1_3:57112404-57112423 None:intergenic 45.0%
!! GATCAGTGTCGATGAACAAC+GGG - chr1_3:57112685-57112704 None:intergenic 45.0%
TCGCTTGAAGTGGAACTTGT+GGG + chr1_3:57112715-57112734 Msa0127650:CDS 45.0%
TCGTGCTCACCGTTGTTTAT+GGG + chr1_3:57112750-57112769 Msa0127650:CDS 45.0%
GCAGTGGAAGATAAAAGGCA+TGG - chr1_3:57113121-57113140 None:intergenic 45.0%
AGGCAATCAAACACTACAGG+AGG - chr1_3:57113514-57113533 None:intergenic 45.0%
CGGTGGTCGTAATCTGATAA+AGG - chr1_3:57113534-57113553 None:intergenic 45.0%
TTATCAGATTACGACCACCG+CGG + chr1_3:57113534-57113553 Msa0127650:three_prime_UTR 45.0%
AGGCTGTTTGGGGGAACTTA+TGG + chr1_3:57111867-57111886 Msa0127650:intron 50.0%
AGGTAGTCAATCCCGGATAG+CGG + chr1_3:57111970-57111989 Msa0127650:intron 50.0%
CGACCCCAAAAGTGGGATAA+CGG + chr1_3:57111994-57112013 Msa0127650:intron 50.0%
GACCCCAAAAGTGGGATAAC+GGG + chr1_3:57111995-57112014 Msa0127650:intron 50.0%
! GGATCCCGTTATCCCACTTT+TGG - chr1_3:57112002-57112021 None:intergenic 50.0%
! ATAACGGGATCCCAGTTAGC+AGG + chr1_3:57112010-57112029 Msa0127650:intron 50.0%
ATCCCAGTTAGCAGGATCAC+CGG + chr1_3:57112018-57112037 Msa0127650:intron 50.0%
! GTTTCTGGAAGTGAGCTTGC+TGG + chr1_3:57112456-57112475 Msa0127650:CDS 50.0%
ATGGTACTCCTCGCTTGAAG+TGG + chr1_3:57112705-57112724 Msa0127650:CDS 50.0%
CACAAGTTCCACTTCAAGCG+AGG - chr1_3:57112716-57112735 None:intergenic 50.0%
CTCGCTTGAAGTGGAACTTG+TGG + chr1_3:57112714-57112733 Msa0127650:CDS 50.0%
CTCGTGCTCACCGTTGTTTA+TGG + chr1_3:57112749-57112768 Msa0127650:CDS 50.0%
AGGTGGAGAGAAAGGTTACC+CGG + chr1_3:57112797-57112816 Msa0127650:CDS 50.0%
TTGTTTGCTTGCGGGCTTAC+TGG + chr1_3:57112957-57112976 Msa0127650:CDS 50.0%
TATCAGATTACGACCACCGC+GGG + chr1_3:57113535-57113554 Msa0127650:three_prime_UTR 50.0%
!!! TCTCGCTTGGTGCTTTTCCC+AGG + chr1_3:57111640-57111659 Msa0127650:five_prime_UTR 55.0%
!!! TTTTGGGGTCGACCGCTATC+CGG - chr1_3:57111985-57112004 None:intergenic 55.0%
ATAGCGGTCGACCCCAAAAG+TGG + chr1_3:57111986-57112005 Msa0127650:intron 55.0%
TAGCGGTCGACCCCAAAAGT+GGG + chr1_3:57111987-57112006 Msa0127650:intron 55.0%
TCCCAGTTAGCAGGATCACC+GGG + chr1_3:57112019-57112038 Msa0127650:intron 55.0%
AGGATCACCGGGGATTGCAA+AGG + chr1_3:57112030-57112049 Msa0127650:intron 55.0%
TCACCGGGGATTGCAAAGGA+TGG + chr1_3:57112034-57112053 Msa0127650:intron 55.0%
AACGCAGGTCTTGCTGCAGA+AGG - chr1_3:57112894-57112913 None:intergenic 55.0%
GCTTGCGGGCTTACTGGAAA+CGG + chr1_3:57112963-57112982 Msa0127650:CDS 55.0%
!!! ACTGGAAACGGCGCTGGTTT+TGG + chr1_3:57112975-57112994 Msa0127650:CDS 55.0%
!!! ACGGCGCTGGTTTTGGTTTC+TGG + chr1_3:57112982-57113001 Msa0127650:CDS 55.0%
GAATCAGACTGGGAGTGACG+TGG + chr1_3:57113340-57113359 Msa0127650:exon 55.0%
! TTTGGGGTCGACCGCTATCC+GGG - chr1_3:57111984-57112003 None:intergenic 60.0%
CCCCGGTGATCCTGCTAACT+GGG - chr1_3:57112023-57112042 None:intergenic 60.0%
CCCAGTTAGCAGGATCACCG+GGG + chr1_3:57112020-57112039 Msa0127650:intron 60.0%
TCCCCGGTGATCCTGCTAAC+TGG - chr1_3:57112024-57112043 None:intergenic 60.0%
CAACGGTGAGCACGAGCTTG+TGG - chr1_3:57112745-57112764 None:intergenic 60.0%
! CAGGCATGGGAGTGCACTCC+TGG + chr1_3:57112383-57112402 Msa0127650:intron 65.0%
GGGCTTACTGGAAACGGCGC+TGG + chr1_3:57112969-57112988 Msa0127650:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 57111019 57113593 57111019 ID=Msa0127650;Name=Msa0127650
chr1_3 mRNA 57111019 57113593 57111019 ID=Msa0127650-mRNA-1;Parent=Msa0127650;Name=Msa0127650-mRNA-1;_AED=0.05;_eAED=0.05;_QI=645|1|1|1|0.8|1|6|236|204
chr1_3 exon 57111019 57111661 57111019 ID=Msa0127650-mRNA-1:exon:18143;Parent=Msa0127650-mRNA-1
chr1_3 exon 57112386 57112576 57112386 ID=Msa0127650-mRNA-1:exon:18144;Parent=Msa0127650-mRNA-1
chr1_3 exon 57112656 57112818 57112656 ID=Msa0127650-mRNA-1:exon:18145;Parent=Msa0127650-mRNA-1
chr1_3 exon 57112901 57113003 57112901 ID=Msa0127650-mRNA-1:exon:18146;Parent=Msa0127650-mRNA-1
chr1_3 exon 57113091 57113172 57113091 ID=Msa0127650-mRNA-1:exon:18147;Parent=Msa0127650-mRNA-1
chr1_3 exon 57113280 57113593 57113280 ID=Msa0127650-mRNA-1:exon:18148;Parent=Msa0127650-mRNA-1
chr1_3 five_prime_UTR 57111019 57111661 57111019 ID=Msa0127650-mRNA-1:five_prime_utr;Parent=Msa0127650-mRNA-1
chr1_3 five_prime_UTR 57112386 57112387 57112386 ID=Msa0127650-mRNA-1:five_prime_utr;Parent=Msa0127650-mRNA-1
chr1_3 CDS 57112388 57112576 57112388 ID=Msa0127650-mRNA-1:cds;Parent=Msa0127650-mRNA-1
chr1_3 CDS 57112656 57112818 57112656 ID=Msa0127650-mRNA-1:cds;Parent=Msa0127650-mRNA-1
chr1_3 CDS 57112901 57113003 57112901 ID=Msa0127650-mRNA-1:cds;Parent=Msa0127650-mRNA-1
chr1_3 CDS 57113091 57113172 57113091 ID=Msa0127650-mRNA-1:cds;Parent=Msa0127650-mRNA-1
chr1_3 CDS 57113280 57113357 57113280 ID=Msa0127650-mRNA-1:cds;Parent=Msa0127650-mRNA-1
chr1_3 three_prime_UTR 57113358 57113593 57113358 ID=Msa0127650-mRNA-1:three_prime_utr;Parent=Msa0127650-mRNA-1
Gene Sequence

>Msa0127650

ATGGGAGTGCACTCCTGGAAAGAGCTAACATGGAACTTGTTGTCCTTGTTTACTTCTTCTGGAATGCTGTTTCTGGAAGTGAGCTTGCTGGCTTTTTTACTTCAGGGAAATAATGCAAGTGGTGTAGAAGCATTGACACGAACTTTTGGTATATCCGGTATCATTGTTGGTTTTGATGTCCTGTTAAAGGCTATATATCTATTTGCATTTGGGGTCCCGTTGTTCATCGACACTGATCATGGTACTCCTCGCTTGAAGTGGAACTTGTGGGTTATCCACAAGCTCGTGCTCACCGTTGTTTATGGGCTCATATTGTTCATGTATCATTCTAGGTGGAGAGAAAGGTTACCCGCAAGACCTGCGTTTTACAAGTATGTTATTATCATGTTCATCTTGAATGCAATTGCATTGTTTGCTTGCGGGCTTACTGGAAACGGCGCTGGTTTTGGTTTCTGGTTTTATCATGTCACTATTGTGTGTTACCATGCCTTTTATCTTCCACTGCTGTATATTACATTTCTGGCAGACTTTTTTCAGGAGGAAGATTTTCACATGGAGAATGTGTATTACTCTGAAATGAAAGATGCTGGTTTTTTCGAATCAGACTGGGAGTGA

Protein sequence

>Msa0127650

MGVHSWKELTWNLLSLFTSSGMLFLEVSLLAFLLQGNNASGVEALTRTFGISGIIVGFDVLLKAIYLFAFGVPLFIDTDHGTPRLKWNLWVIHKLVLTVVYGLILFMYHSRWRERLPARPAFYKYVIIMFILNAIALFACGLTGNGAGFGFWFYHVTIVCYHAFYLPLLYITFLADFFQEEDFHMENVYYSEMKDAGFFESDWE*