AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0571820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0571820 MtrunA17_Chr8g0387211 97.033 573 17 0 1 573 1 573 0.0 1153
Msa0571820 MtrunA17_Chr4g0048391 83.220 590 78 3 1 573 3 588 0.0 1006
Msa0571820 MtrunA17_Chr7g0251831 56.021 573 237 5 9 573 6 571 0.0 644
Msa0571820 MtrunA17_Chr1g0196061 52.982 570 259 2 9 573 16 581 0.0 637
Msa0571820 MtrunA17_Chr5g0427061 49.825 572 272 6 9 573 53 616 0.0 546
Msa0571820 MtrunA17_Chr3g0133241 49.477 574 274 6 11 573 25 593 0.0 545
Msa0571820 MtrunA17_Chr5g0436511 33.164 591 354 15 6 573 10 582 6.19e-96 304
Msa0571820 MtrunA17_Chr3g0113151 30.588 595 371 11 6 573 14 593 4.48e-81 266
Msa0571820 MtrunA17_Chr8g0364131 28.700 554 316 14 31 567 9 500 1.50e-60 209
Msa0571820 MtrunA17_Chr5g0439771 51.456 103 45 1 35 132 17 119 1.89e-28 110
Msa0571820 MtrunA17_Chr2g0286991 22.344 546 326 14 9 536 13 478 7.08e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0571820 AT3G62980.1 55.965 570 242 2 9 573 11 576 0.0 632
Msa0571820 AT1G12820.1 52.749 582 248 5 9 573 6 577 0.0 624
Msa0571820 AT3G26810.1 54.087 575 249 5 9 573 6 575 0.0 621
Msa0571820 AT4G03190.1 53.497 572 258 3 6 573 4 571 0.0 616
Msa0571820 AT4G24390.2 50.261 575 269 6 9 573 56 623 0.0 568
Msa0571820 AT4G24390.1 50.261 575 269 6 9 573 56 623 0.0 568
Msa0571820 AT5G49980.1 49.033 569 281 5 9 573 56 619 0.0 552
Msa0571820 AT2G39940.1 31.980 591 366 12 4 573 13 588 1.51e-100 317
Msa0571820 AT4G15475.1 23.917 531 310 17 9 523 13 465 1.94e-21 99.0
Msa0571820 AT5G25350.1 26.695 236 129 10 315 519 166 388 4.43e-11 66.2

Find 150 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATGATGTAAAGCTTTC+TGG 0.104076 4_1:+74538222 None:intergenic
TTCACACCCTTTCTGGTTTA+TGG 0.116366 4_1:-74537960 Msa0571820:CDS
TCAACTTGGTTCCTGAAAAT+TGG 0.125267 4_1:-74539358 Msa0571820:CDS
AAGAGTATTCACACCCTTTC+TGG 0.148691 4_1:-74537967 Msa0571820:CDS
TTCCATCAAGTTCCATGTTT+TGG 0.222745 4_1:-74539769 Msa0571820:five_prime_UTR
CTCCGAAGGCTTTCTGTATC+AGG 0.231689 4_1:-74537346 Msa0571820:CDS
CAACTTGGTTCCTGAAAATT+GGG 0.247042 4_1:-74539357 Msa0571820:CDS
GTTGAATGTTGAAGTAATTA+AGG 0.252910 4_1:-74537050 Msa0571820:CDS
TCACACCCTTTCTGGTTTAT+GGG 0.255188 4_1:-74537959 Msa0571820:CDS
GTCCCGACTTCACTCATTTC+CGG 0.256575 4_1:-74537459 Msa0571820:CDS
CCTTGGAATGTGACCGTATA+TGG 0.262480 4_1:-74536508 Msa0571820:three_prime_UTR
CAACAACACAACATTGTAAT+TGG 0.262838 4_1:+74539937 None:intergenic
CGATATTTACATCATTGTTT+AGG 0.287424 4_1:+74538181 None:intergenic
GTCCTAATCTTCGACGCCTT+TGG 0.294619 4_1:-74537810 Msa0571820:CDS
ATGCAAGTGTCCATTGTAAA+TGG 0.297989 4_1:-74536281 Msa0571820:three_prime_UTR
TATGTTTATCGTTCTGTTGC+CGG 0.306416 4_1:-74536992 Msa0571820:CDS
ACAATGAAGCCTCAGTAATA+TGG 0.313485 4_1:-74536469 Msa0571820:three_prime_UTR
AGTGTAACACTTCTTATGTT+TGG 0.320668 4_1:+74539407 None:intergenic
TCCTAATCTTCGACGCCTTT+GGG 0.326628 4_1:-74537809 Msa0571820:intron
GTCAGGTAATCTGGCTGATT+AGG 0.330799 4_1:+74537421 None:intergenic
CTAACTTTAAACTACCCTTT+TGG 0.330991 4_1:+74539646 None:intergenic
CCCAGAAAGCTTTACATCAT+TGG 0.331548 4_1:-74538223 Msa0571820:CDS
AATGGAGGGGCATCCCTTCT+TGG 0.338658 4_1:+74536968 None:intergenic
CAATTACAATGTTGTGTTGT+TGG 0.349096 4_1:-74539936 Msa0571820:five_prime_UTR
CTTGCCTTCTTTCAACTAGT+TGG 0.351212 4_1:-74536321 Msa0571820:three_prime_UTR
TCAGGTAATCTGGCTGATTA+GGG 0.351214 4_1:+74537422 None:intergenic
TAAATCTTACTTGCAATTAG+TGG 0.351338 4_1:+74539148 None:intergenic
GAAGTGTTGAAACAAGTTCT+TGG 0.355603 4_1:-74539569 Msa0571820:CDS
TTGACGAGGGCGTTGTGCAC+GGG 0.358953 4_1:-74537594 Msa0571820:CDS
CCAATGATGTAAAGCTTTCT+GGG 0.365785 4_1:+74538223 None:intergenic
TTGCCTTCTTTCAACTAGTT+GGG 0.371284 4_1:-74536320 Msa0571820:three_prime_UTR
ATTACTGAGGCTTCATTGTC+AGG 0.371423 4_1:+74536473 None:intergenic
GGTTCATTCGTCAGGTAATC+TGG 0.379909 4_1:+74537412 None:intergenic
GTGCACGGGGTTACTGAATC+AGG 0.384151 4_1:-74537580 Msa0571820:CDS
GGGATGCAGTCTGTACTTGC+TGG 0.384929 4_1:-74537232 Msa0571820:CDS
ACCTCGCATTTGAGTATATA+GGG 0.389051 4_1:-74537312 Msa0571820:CDS
GAACCTATGGATGAGGCCTT+TGG 0.395697 4_1:-74537394 Msa0571820:CDS
CATCCCCAAGTCACTGCTTC+CGG 0.400099 4_1:+74537249 None:intergenic
AGCCTCAACTCCTCAAGAAA+AGG 0.404387 4_1:+74539290 None:intergenic
GCTGAGAAAACTTGAGATAA+GGG 0.404897 4_1:-74537200 Msa0571820:CDS
GGAGTTGAGGCTTAAGAGAA+TGG 0.408628 4_1:-74539279 Msa0571820:CDS
GCCCCTCAGTTATGTGAGCT+TGG 0.420842 4_1:-74538060 Msa0571820:CDS
GACACTTGCATTATTTCTCT+TGG 0.421671 4_1:+74536293 None:intergenic
ATGGAGGGGCATCCCTTCTT+GGG 0.423321 4_1:+74536969 None:intergenic
CAAATCTTTGAAGACTTTGA+AGG 0.423965 4_1:-74538130 Msa0571820:CDS
GAACAAGAGTGATGATGATA+AGG 0.433314 4_1:+74539865 None:intergenic
CCTGCAGATCCCTTTGACGA+GGG 0.435295 4_1:-74537607 Msa0571820:CDS
TTTCAGAGAGTGAGAACAAA+TGG 0.440221 4_1:+74536950 None:intergenic
TGTTGTTGTGTTGTTGAACA+TGG 0.441429 4_1:-74539615 Msa0571820:exon
ACCCAAAGGCGTCGAAGATT+AGG 0.441455 4_1:+74537808 None:intergenic
GCCATTGATTGTTGTTGTGT+TGG 0.448430 4_1:-74536391 Msa0571820:three_prime_UTR
GATGCCAACTTTGCCATATA+CGG 0.454128 4_1:+74536495 None:intergenic
CCCTCGTCAAAGGGATCTGC+AGG 0.454715 4_1:+74537607 None:intergenic
ACTTGCATTATTTCTCTTGG+TGG 0.460932 4_1:+74536296 None:intergenic
GGGGTGCTGATATTCATTCA+TGG 0.461105 4_1:-74539337 Msa0571820:CDS
TACCAAAACATGGAACTTGA+TGG 0.461282 4_1:+74539767 None:intergenic
CATCCATAGGTTCATTCGTC+AGG 0.461410 4_1:+74537404 None:intergenic
TTTGACGAGGGCGTTGTGCA+CGG 0.463162 4_1:-74537595 Msa0571820:CDS
AGCTGAGAAAACTTGAGATA+AGG 0.465986 4_1:-74537201 Msa0571820:CDS
GTGCACAACGCCCTCGTCAA+AGG 0.468017 4_1:+74537597 None:intergenic
TACATCCATTCATTGTTACT+TGG 0.471398 4_1:+74537098 None:intergenic
AATCTACTTGTCAAGATCTC+AGG 0.472486 4_1:+74539431 None:intergenic
TGCACAACGCCCTCGTCAAA+GGG 0.472717 4_1:+74537598 None:intergenic
TGCTGATATTCATTCATGGT+TGG 0.476550 4_1:-74539333 Msa0571820:CDS
TTTGCCGGAAGCAGTGACTT+GGG 0.476674 4_1:-74537253 Msa0571820:CDS
TTGAATTGAAATATTTATCC+TGG 0.478176 4_1:-74536161 Msa0571820:three_prime_UTR
AGGGGCATCCCTTCTTGGGC+CGG 0.481810 4_1:+74536973 None:intergenic
AGGATTTAGCACTGATGGCT+TGG 0.482352 4_1:-74539180 Msa0571820:CDS
GACTGCCAAGTAACAATGAA+TGG 0.488206 4_1:-74537103 Msa0571820:CDS
ACCAACACAACAACAATCAA+TGG 0.488230 4_1:+74536390 None:intergenic
CCATATACGGTCACATTCCA+AGG 0.490187 4_1:+74536508 None:intergenic
AGAGGACGTAGTGAAGCTTC+CGG 0.490890 4_1:+74537533 None:intergenic
GTTGAAGTAATTAAGGAAGA+AGG 0.492228 4_1:-74537043 Msa0571820:CDS
CAGTTATGTGAGCTTGGCAG+TGG 0.493794 4_1:-74538054 Msa0571820:CDS
ATAAGAAGTGTTACACTCAA+AGG 0.496754 4_1:-74539401 Msa0571820:CDS
CACCCTTTCTGGTTTATGGG+TGG 0.500938 4_1:-74537956 Msa0571820:CDS
GACCTCGCATTTGAGTATAT+AGG 0.502729 4_1:-74537313 Msa0571820:CDS
GCCTCAACTCCTCAAGAAAA+GGG 0.504006 4_1:+74539291 None:intergenic
GAGATAAGGGACTGTCCATT+CGG 0.505837 4_1:-74537187 Msa0571820:CDS
GATGCGCTTGAGAAACTTGT+CGG 0.507130 4_1:-74538159 Msa0571820:CDS
TAAGAAGTGTTACACTCAAA+GGG 0.508033 4_1:-74539400 Msa0571820:CDS
TCGATGACAAAAGCGGTGAT+TGG 0.508436 4_1:-74538257 Msa0571820:CDS
CAGAGTATAGAACTTGAAGT+TGG 0.510227 4_1:+74537911 None:intergenic
AAGCCTTCGGAGTTTAGTGC+AGG 0.517337 4_1:+74537357 None:intergenic
AACAATCAATGGCTACATGA+TGG 0.520965 4_1:+74536401 None:intergenic
CTTTCTCTACTGAGCTGTGA+AGG 0.522326 4_1:-74539200 Msa0571820:CDS
GTTCTGTTGCCGGCCCAAGA+AGG 0.525623 4_1:-74536982 Msa0571820:CDS
AGCCGGAAATGAGTGAAGTC+GGG 0.530471 4_1:+74537457 None:intergenic
ATTCTCTTGTATGTCAAGCT+CGG 0.532804 4_1:+74538284 None:intergenic
TGTGAAGGATTTAGCACTGA+TGG 0.534547 4_1:-74539185 Msa0571820:CDS
TTCTGTTGCCGGCCCAAGAA+GGG 0.535830 4_1:-74536981 Msa0571820:CDS
GTGACCGTATATGGCAAAGT+TGG 0.535910 4_1:-74536499 Msa0571820:three_prime_UTR
GCTCCAAAGGCCTCATCCAT+AGG 0.536354 4_1:+74537391 None:intergenic
TTGCTGTCTCTGAAGGATGC+CGG 0.538728 4_1:-74537552 Msa0571820:CDS
CAGCCGGAAATGAGTGAAGT+CGG 0.540088 4_1:+74537456 None:intergenic
AGCCACCCATAAACCAGAAA+GGG 0.542673 4_1:+74537954 None:intergenic
TAGGGGTCATGATGCACAGC+CGG 0.545042 4_1:+74537440 None:intergenic
GGTCTTAACAACTGCTCCAA+AGG 0.546055 4_1:+74537378 None:intergenic
CAGCATCATTTGTCATCTGA+TGG 0.546732 4_1:+74537503 None:intergenic
TTACCTGACGAATGAACCTA+TGG 0.549205 4_1:-74537407 Msa0571820:CDS
AACCTGATACAGAAAGCCTT+CGG 0.551463 4_1:+74537344 None:intergenic
TCCTGCAGATCCCTTTGACG+AGG 0.558084 4_1:-74537608 Msa0571820:CDS
CACAGTTGAAGACAAGGGAC+TGG 0.558137 4_1:-74537677 Msa0571820:CDS
CCTACACTTTGAAGCTCAAG+AGG 0.559487 4_1:-74536914 Msa0571820:intron
TTAATGAAGAGATCTAGAAA+AGG 0.561940 4_1:+74539813 None:intergenic
ACACGTAGCTCCTCGAGCAA+TGG 0.562903 4_1:+74537634 None:intergenic
GACAAGGGACTGGAAGCTGT+TGG 0.564143 4_1:-74537667 Msa0571820:CDS
ACGTTTCTCTGACTTCAACT+TGG 0.564927 4_1:-74539372 Msa0571820:CDS
CCTCTTGAGCTTCAAAGTGT+AGG 0.568176 4_1:+74536914 None:intergenic
TGACGAGGGCGTTGTGCACG+GGG 0.568532 4_1:-74537593 Msa0571820:CDS
AAACTTGGAAACGCTTTCAG+TGG 0.570395 4_1:-74537278 Msa0571820:CDS
GGACCCAACTAGTTGAAAGA+AGG 0.570671 4_1:+74536317 None:intergenic
ATGAGTCAATGAGATCACTT+TGG 0.571140 4_1:-74537132 Msa0571820:CDS
CTTGGTTGCATACCAAAACA+TGG 0.574910 4_1:+74539757 None:intergenic
AATGAGATCACTTTGGATGT+CGG 0.575734 4_1:-74537125 Msa0571820:CDS
AAGCCACCCATAAACCAGAA+AGG 0.576681 4_1:+74537953 None:intergenic
TTCCACCTTCCATATTACTG+AGG 0.577064 4_1:+74536460 None:intergenic
TTGCCGGAAGCAGTGACTTG+GGG 0.577064 4_1:-74537252 Msa0571820:CDS
GACGAATGAACCTATGGATG+AGG 0.578886 4_1:-74537401 Msa0571820:CDS
ATTACTTCAACATTCAACCT+CGG 0.585805 4_1:+74537055 None:intergenic
TCATCTGATGGCAAAAGTAG+AGG 0.589318 4_1:+74537515 None:intergenic
TTTCTTTAGTTTGCAAACAG+TGG 0.597043 4_1:-74539514 Msa0571820:CDS
TGTTGTGTTGTTGGACAACA+AGG 0.597948 4_1:-74539927 Msa0571820:five_prime_UTR
AAAAGTGCTGCATCGCCGAA+TGG 0.606996 4_1:+74537172 None:intergenic
GAAATATGTTTGTCTCTACC+AGG 0.608178 4_1:+74536143 None:intergenic
CAGAGAGTGAGAACAAATGG+AGG 0.612840 4_1:+74536953 None:intergenic
AGCCTCAGTAATATGGAAGG+TGG 0.616841 4_1:-74536462 Msa0571820:three_prime_UTR
TGCCAAGCTCACATAACTGA+GGG 0.617421 4_1:+74538058 None:intergenic
CGCTTGAGAAACTTGTCGGT+AGG 0.619571 4_1:-74538155 Msa0571820:CDS
AACTTGGTTCCTGAAAATTG+GGG 0.622806 4_1:-74539356 Msa0571820:CDS
AGAGAGTGAGAACAAATGGA+GGG 0.623048 4_1:+74536954 None:intergenic
ATCATATTGTCCATTGCTCG+AGG 0.624054 4_1:-74537644 Msa0571820:CDS
AAAACATGGAACTTGATGGA+AGG 0.624501 4_1:+74539771 None:intergenic
TGAAGCCTCAGTAATATGGA+AGG 0.626705 4_1:-74536465 Msa0571820:three_prime_UTR
TCAGTAATATGGAAGGTGGA+AGG 0.628553 4_1:-74536458 Msa0571820:three_prime_UTR
TCCCTATATACTCAAATGCG+AGG 0.631371 4_1:+74537311 None:intergenic
TGTTGTGTTGTTGAACATGG+AGG 0.632665 4_1:-74539612 Msa0571820:exon
AGAGTGATGATGATAAGGAA+AGG 0.636075 4_1:+74539870 None:intergenic
TGTTAGCAAAAGAAAAGCCG+AGG 0.639572 4_1:-74537072 Msa0571820:CDS
TGTAGACACAGTTGAAGACA+AGG 0.644710 4_1:-74537683 Msa0571820:CDS
AATGACATCGATGACAAAAG+CGG 0.649581 4_1:-74538264 Msa0571820:CDS
CAGGTAATCTGGCTGATTAG+GGG 0.650421 4_1:+74537423 None:intergenic
AGACCTGCACTAAACTCCGA+AGG 0.654047 4_1:-74537360 Msa0571820:CDS
CTGCCAAGCTCACATAACTG+AGG 0.656866 4_1:+74538057 None:intergenic
ACAACGCTGAAAGATTGTCA+AGG 0.689288 4_1:-74539490 Msa0571820:CDS
GAGAGTGAGAACAAATGGAG+GGG 0.695193 4_1:+74536955 None:intergenic
ACGCTGAAAGATTGTCAAGG+AGG 0.697851 4_1:-74539487 Msa0571820:CDS
GCCAAGCTCACATAACTGAG+GGG 0.733620 4_1:+74538059 None:intergenic
GTAGACACAGTTGAAGACAA+GGG 0.743765 4_1:-74537682 Msa0571820:CDS
AAGTTGAAGTCAGAGAAACG+TGG 0.761191 4_1:+74539374 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAAATGTGATTTAAT+AGG - chr4_1:74537512-74537531 Msa0571820:CDS 10.0%
!! TAATTAAATGTGATTTAATA+GGG - chr4_1:74537513-74537532 Msa0571820:CDS 10.0%
!!! ACAAAAAGTTTTTTAATTTT+AGG - chr4_1:74539853-74539872 Msa0571820:five_prime_UTR 10.0%
!!! CAAAAAGTTTTTTAATTTTA+GGG - chr4_1:74539854-74539873 Msa0571820:five_prime_UTR 10.0%
!!! AAAAAGTTTTTTAATTTTAG+GGG - chr4_1:74539855-74539874 Msa0571820:five_prime_UTR 10.0%
!! TAAATCAATCTATGAATTAA+TGG + chr4_1:74537254-74537273 None:intergenic 15.0%
!!! AATTCATAGATTGATTTATT+AGG - chr4_1:74537256-74537275 Msa0571820:CDS 15.0%
!! ATGTAAATAATTTATGTCAA+CGG + chr4_1:74537330-74537349 None:intergenic 15.0%
!!! CTTTTTAAGATTCTTAATTA+AGG - chr4_1:74537388-74537407 Msa0571820:CDS 15.0%
!!! TTTTTTTTTAGATTTAGCAT+AGG - chr4_1:74537549-74537568 Msa0571820:CDS 15.0%
!!! TTTTTTTTAGATTTAGCATA+GGG - chr4_1:74537550-74537569 Msa0571820:CDS 15.0%
!! TCTCAATTGACAATATATTT+AGG + chr4_1:74537067-74537086 None:intergenic 20.0%
!! TATCAATCAATTATAATAGC+CGG + chr4_1:74537432-74537451 None:intergenic 20.0%
!! CATTTAATTATGTAACAATG+AGG + chr4_1:74537503-74537522 None:intergenic 20.0%
!! GCATATATGATTATTAACTT+TGG - chr4_1:74537588-74537607 Msa0571820:CDS 20.0%
!! TTTGAAAATTTGGTATTTCT+TGG - chr4_1:74537733-74537752 Msa0571820:intron 20.0%
!!! AAAGAATGATGAAAATGTTT+TGG - chr4_1:74538355-74538374 Msa0571820:intron 20.0%
!! CTTTCTTAGTCTAATTAATT+GGG + chr4_1:74539287-74539306 None:intergenic 20.0%
!! TCTTTCTTAGTCTAATTAAT+TGG + chr4_1:74539288-74539307 None:intergenic 20.0%
!! GTTGATTGGTAAAAAAATAA+TGG - chr4_1:74539353-74539372 Msa0571820:CDS 20.0%
!! AAAGTAAAGTGACAAATAAT+TGG + chr4_1:74539491-74539510 None:intergenic 20.0%
!! TTGAATTGAAATATTTATCC+TGG - chr4_1:74539920-74539939 Msa0571820:five_prime_UTR 20.0%
! TTAATGAAGAGATCTAGAAA+AGG + chr4_1:74536271-74536290 None:intergenic 25.0%
!! ACTGAAAATTTTGAATGCAA+AGG + chr4_1:74536352-74536371 None:intergenic 25.0%
! TGACAAAAAAAATCTCCAAA+AGG - chr4_1:74536420-74536439 Msa0571820:three_prime_UTR 25.0%
! GACAAAAAAAATCTCCAAAA+GGG - chr4_1:74536421-74536440 Msa0571820:three_prime_UTR 25.0%
! TAAATCTTACTTGCAATTAG+TGG + chr4_1:74536936-74536955 None:intergenic 25.0%
!!! TTGCATTGTTTTTCTTTTAC+TGG - chr4_1:74537201-74537220 Msa0571820:CDS 25.0%
! ATTAGGATTCACTAAAATAC+AGG - chr4_1:74537273-74537292 Msa0571820:CDS 25.0%
! TGAATCCATAAAAATACTTG+TGG - chr4_1:74537466-74537485 Msa0571820:CDS 25.0%
!!! AAGTTCCACAAGTATTTTTA+TGG + chr4_1:74537474-74537493 None:intergenic 25.0%
! ATCATATATGCAGTACTTAA+AGG + chr4_1:74537579-74537598 None:intergenic 25.0%
! CATATCGAGATTTGAAAATT+TGG - chr4_1:74537723-74537742 Msa0571820:intron 25.0%
! CGATATTTACATCATTGTTT+AGG + chr4_1:74537903-74537922 None:intergenic 25.0%
! ATAAAGAAAATCATACCCAA+AGG + chr4_1:74538290-74538309 None:intergenic 25.0%
! GTTGAATGTTGAAGTAATTA+AGG - chr4_1:74539031-74539050 Msa0571820:intron 25.0%
!! AGTCTAATTAATTGGGTTTT+GGG + chr4_1:74539280-74539299 None:intergenic 25.0%
!! TAGTCTAATTAATTGGGTTT+TGG + chr4_1:74539281-74539300 None:intergenic 25.0%
! TATTATATGATTCTGCTCTT+TGG - chr4_1:74539320-74539339 Msa0571820:CDS 25.0%
! TTGGAAAACAAATTGTTGAT+TGG - chr4_1:74539339-74539358 Msa0571820:CDS 25.0%
!!! TCATCATCAACTTTTTCAAA+TGG - chr4_1:74539435-74539454 Msa0571820:CDS 25.0%
!!! ATTTTTCATGCCATTTACAA+TGG + chr4_1:74539813-74539832 None:intergenic 25.0%
CAACAACACAACATTGTAAT+TGG + chr4_1:74536147-74536166 None:intergenic 30.0%
CAATTACAATGTTGTGTTGT+TGG - chr4_1:74536145-74536164 Msa0571820:three_prime_UTR 30.0%
!!! ATTTTGAATGCAAAGGTACT+TGG + chr4_1:74536345-74536364 None:intergenic 30.0%
! CTAACTTTAAACTACCCTTT+TGG + chr4_1:74536438-74536457 None:intergenic 30.0%
!! TTTCTTTAGTTTGCAAACAG+TGG - chr4_1:74536567-74536586 Msa0571820:intron 30.0%
AGTGTAACACTTCTTATGTT+TGG + chr4_1:74536677-74536696 None:intergenic 30.0%
!! ATAAGAAGTGTTACACTCAA+AGG - chr4_1:74536680-74536699 Msa0571820:intron 30.0%
!! TAAGAAGTGTTACACTCAAA+GGG - chr4_1:74536681-74536700 Msa0571820:intron 30.0%
!! TGATGAGAGTTTAGAGTTTT+TGG - chr4_1:74536832-74536851 Msa0571820:intron 30.0%
!! GCTAAGATTTGTTGTTTGTA+TGG - chr4_1:74537169-74537188 Msa0571820:CDS 30.0%
AAAGAAAAACAATGCAAACC+AGG + chr4_1:74537198-74537217 None:intergenic 30.0%
! GCTTTTTGCACATATACAAT+TGG + chr4_1:74537369-74537388 None:intergenic 30.0%
! GACAAGCATTTTTAATGATC+CGG - chr4_1:74537410-74537429 Msa0571820:CDS 30.0%
TCTGAATATTACATTGATGC+AGG - chr4_1:74537767-74537786 Msa0571820:intron 30.0%
! CAAATCTTTGAAGACTTTGA+AGG - chr4_1:74537951-74537970 Msa0571820:CDS 30.0%
TTGGAACATCTACATTATAC+AGG - chr4_1:74538374-74538393 Msa0571820:intron 30.0%
TACATCCATTCATTGTTACT+TGG + chr4_1:74538986-74539005 None:intergenic 30.0%
ATTACTTCAACATTCAACCT+CGG + chr4_1:74539029-74539048 None:intergenic 30.0%
GTTGAAGTAATTAAGGAAGA+AGG - chr4_1:74539038-74539057 Msa0571820:intron 30.0%
TGGTAAAAAAATAATGGCCT+TGG - chr4_1:74539359-74539378 Msa0571820:CDS 30.0%
! AGTGGAAACATCACTATTTT+TGG - chr4_1:74539394-74539413 Msa0571820:CDS 30.0%
!! GTGGAAACATCACTATTTTT+GGG - chr4_1:74539395-74539414 Msa0571820:CDS 30.0%
! AGAGTGATGATGATAAGGAA+AGG + chr4_1:74536214-74536233 None:intergenic 35.0%
! GAACAAGAGTGATGATGATA+AGG + chr4_1:74536219-74536238 None:intergenic 35.0%
AAAACATGGAACTTGATGGA+AGG + chr4_1:74536313-74536332 None:intergenic 35.0%
! TTCCATCAAGTTCCATGTTT+TGG - chr4_1:74536312-74536331 Msa0571820:three_prime_UTR 35.0%
TACCAAAACATGGAACTTGA+TGG + chr4_1:74536317-74536336 None:intergenic 35.0%
! TGTTGTTGTGTTGTTGAACA+TGG - chr4_1:74536466-74536485 Msa0571820:three_prime_UTR 35.0%
!! GAAGTGTTGAAACAAGTTCT+TGG - chr4_1:74536512-74536531 Msa0571820:intron 35.0%
! TCAAGGAGGAATGTTTTCAT+AGG - chr4_1:74536608-74536627 Msa0571820:intron 35.0%
AATCTACTTGTCAAGATCTC+AGG + chr4_1:74536653-74536672 None:intergenic 35.0%
TCAACTTGGTTCCTGAAAAT+TGG - chr4_1:74536723-74536742 Msa0571820:intron 35.0%
CAACTTGGTTCCTGAAAATT+GGG - chr4_1:74536724-74536743 Msa0571820:intron 35.0%
AACTTGGTTCCTGAAAATTG+GGG - chr4_1:74536725-74536744 Msa0571820:intron 35.0%
TGCTGATATTCATTCATGGT+TGG - chr4_1:74536748-74536767 Msa0571820:intron 35.0%
!!! TGAAAAGTACCCTTTTCTTG+AGG - chr4_1:74536781-74536800 Msa0571820:intron 35.0%
ATGGATTCAACAAACATGCA+TGG + chr4_1:74537455-74537474 None:intergenic 35.0%
ATTCTCTTGTATGTCAAGCT+CGG + chr4_1:74537800-74537819 None:intergenic 35.0%
AATGACATCGATGACAAAAG+CGG - chr4_1:74537817-74537836 Msa0571820:CDS 35.0%
CCAATGATGTAAAGCTTTCT+GGG + chr4_1:74537861-74537880 None:intergenic 35.0%
TCCAATGATGTAAAGCTTTC+TGG + chr4_1:74537862-74537881 None:intergenic 35.0%
CAGAGTATAGAACTTGAAGT+TGG + chr4_1:74538173-74538192 None:intergenic 35.0%
ACCTCGCATTTGAGTATATA+GGG - chr4_1:74538769-74538788 Msa0571820:intron 35.0%
!!! TGAAAGCGTTTCCAAGTTTT+TGG + chr4_1:74538802-74538821 None:intergenic 35.0%
! ATCTCAAGTTTTCTCAGCTT+CGG + chr4_1:74538879-74538898 None:intergenic 35.0%
AGCTGAGAAAACTTGAGATA+AGG - chr4_1:74538880-74538899 Msa0571820:intron 35.0%
GCTGAGAAAACTTGAGATAA+GGG - chr4_1:74538881-74538900 Msa0571820:intron 35.0%
ATGAGTCAATGAGATCACTT+TGG - chr4_1:74538949-74538968 Msa0571820:intron 35.0%
AATGAGATCACTTTGGATGT+CGG - chr4_1:74538956-74538975 Msa0571820:intron 35.0%
TATGTTTATCGTTCTGTTGC+CGG - chr4_1:74539089-74539108 Msa0571820:intron 35.0%
TTTCAGAGAGTGAGAACAAA+TGG + chr4_1:74539134-74539153 None:intergenic 35.0%
ATTGAAATGTGCATGCCATA+TGG - chr4_1:74539237-74539256 Msa0571820:CDS 35.0%
! ATAATTTTGTGTTGCAGCCT+TGG - chr4_1:74539556-74539575 Msa0571820:CDS 35.0%
ACAATGAAGCCTCAGTAATA+TGG - chr4_1:74539612-74539631 Msa0571820:exon 35.0%
AAGGTGGAAGGAAGAAAAAT+AGG - chr4_1:74539635-74539654 Msa0571820:five_prime_UTR 35.0%
AGGTGGAAGGAAGAAAAATA+GGG - chr4_1:74539636-74539655 Msa0571820:five_prime_UTR 35.0%
AACAATCAATGGCTACATGA+TGG + chr4_1:74539683-74539702 None:intergenic 35.0%
ACCAACACAACAACAATCAA+TGG + chr4_1:74539694-74539713 None:intergenic 35.0%
TTGCCTTCTTTCAACTAGTT+GGG - chr4_1:74539761-74539780 Msa0571820:five_prime_UTR 35.0%
! ACTTGCATTATTTCTCTTGG+TGG + chr4_1:74539788-74539807 None:intergenic 35.0%
! GACACTTGCATTATTTCTCT+TGG + chr4_1:74539791-74539810 None:intergenic 35.0%
ATGCAAGTGTCCATTGTAAA+TGG - chr4_1:74539800-74539819 Msa0571820:five_prime_UTR 35.0%
!! TAATTTTAGGGGATCGTGTT+AGG - chr4_1:74539866-74539885 Msa0571820:five_prime_UTR 35.0%
GAAATATGTTTGTCTCTACC+AGG + chr4_1:74539941-74539960 None:intergenic 35.0%
! TGTTGTGTTGTTGGACAACA+AGG - chr4_1:74536154-74536173 Msa0571820:three_prime_UTR 40.0%
CTTGGTTGCATACCAAAACA+TGG + chr4_1:74536327-74536346 None:intergenic 40.0%
! TGTTGTGTTGTTGAACATGG+AGG - chr4_1:74536469-74536488 Msa0571820:three_prime_UTR 40.0%
ACAACGCTGAAAGATTGTCA+AGG - chr4_1:74536591-74536610 Msa0571820:intron 40.0%
AAGTTGAAGTCAGAGAAACG+TGG + chr4_1:74536710-74536729 None:intergenic 40.0%
ACGTTTCTCTGACTTCAACT+TGG - chr4_1:74536709-74536728 Msa0571820:intron 40.0%
! ATATCAGCACCCCAATTTTC+AGG + chr4_1:74536737-74536756 None:intergenic 40.0%
! TGTGAAGGATTTAGCACTGA+TGG - chr4_1:74536896-74536915 Msa0571820:intron 40.0%
AGTTGTGTGTGAGTTTCAAG+TGG + chr4_1:74537006-74537025 None:intergenic 40.0%
TCTACCGAAAAATGTCCGTA+GGG + chr4_1:74537105-74537124 None:intergenic 40.0%
CAAGGATTCTCTTCTCTAGT+TGG + chr4_1:74537130-74537149 None:intergenic 40.0%
AAGAGAATCCTTGTCCTATG+AGG - chr4_1:74537137-74537156 Msa0571820:CDS 40.0%
AATCCTTGTCCTATGAGGAT+AGG - chr4_1:74537142-74537161 Msa0571820:CDS 40.0%
TCACACTGCTTATGCTTTCA+GGG + chr4_1:74537629-74537648 None:intergenic 40.0%
ATCACACTGCTTATGCTTTC+AGG + chr4_1:74537630-74537649 None:intergenic 40.0%
CCCAGAAAGCTTTACATCAT+TGG - chr4_1:74537858-74537877 Msa0571820:CDS 40.0%
!! AAGAGTATTCACACCCTTTC+TGG - chr4_1:74538114-74538133 Msa0571820:CDS 40.0%
!! TTCACACCCTTTCTGGTTTA+TGG - chr4_1:74538121-74538140 Msa0571820:CDS 40.0%
!! TCACACCCTTTCTGGTTTAT+GGG - chr4_1:74538122-74538141 Msa0571820:CDS 40.0%
TGTAGACACAGTTGAAGACA+AGG - chr4_1:74538398-74538417 Msa0571820:intron 40.0%
GTAGACACAGTTGAAGACAA+GGG - chr4_1:74538399-74538418 Msa0571820:intron 40.0%
ATCATATTGTCCATTGCTCG+AGG - chr4_1:74538437-74538456 Msa0571820:intron 40.0%
!!! GGTTTTATTGCTGTCTCTGA+AGG - chr4_1:74538522-74538541 Msa0571820:intron 40.0%
TCATCTGATGGCAAAAGTAG+AGG + chr4_1:74538569-74538588 None:intergenic 40.0%
CAGCATCATTTGTCATCTGA+TGG + chr4_1:74538581-74538600 None:intergenic 40.0%
TCAGGTAATCTGGCTGATTA+GGG + chr4_1:74538662-74538681 None:intergenic 40.0%
TTACCTGACGAATGAACCTA+TGG - chr4_1:74538674-74538693 Msa0571820:intron 40.0%
AACCTGATACAGAAAGCCTT+CGG + chr4_1:74538740-74538759 None:intergenic 40.0%
GACCTCGCATTTGAGTATAT+AGG - chr4_1:74538768-74538787 Msa0571820:intron 40.0%
TCCCTATATACTCAAATGCG+AGG + chr4_1:74538773-74538792 None:intergenic 40.0%
! AGGGAAGTATGCCAAAAACT+TGG - chr4_1:74538788-74538807 Msa0571820:intron 40.0%
AAACTTGGAAACGCTTTCAG+TGG - chr4_1:74538803-74538822 Msa0571820:intron 40.0%
GACTGCCAAGTAACAATGAA+TGG - chr4_1:74538978-74538997 Msa0571820:intron 40.0%
TGTTAGCAAAAGAAAAGCCG+AGG - chr4_1:74539009-74539028 Msa0571820:intron 40.0%
AGAGAGTGAGAACAAATGGA+GGG + chr4_1:74539130-74539149 None:intergenic 40.0%
CCACTAGTAAGTAGTAACCA+AGG + chr4_1:74539379-74539398 None:intergenic 40.0%
CCTTGGTTACTACTTACTAG+TGG - chr4_1:74539376-74539395 Msa0571820:CDS 40.0%
GATGCCAACTTTGCCATATA+CGG + chr4_1:74539589-74539608 None:intergenic 40.0%
ATTACTGAGGCTTCATTGTC+AGG + chr4_1:74539611-74539630 None:intergenic 40.0%
TGAAGCCTCAGTAATATGGA+AGG - chr4_1:74539616-74539635 Msa0571820:exon 40.0%
TTCCACCTTCCATATTACTG+AGG + chr4_1:74539624-74539643 None:intergenic 40.0%
TCAGTAATATGGAAGGTGGA+AGG - chr4_1:74539623-74539642 Msa0571820:five_prime_UTR 40.0%
GGTGGAAGGAAGAAAAATAG+GGG - chr4_1:74539637-74539656 Msa0571820:five_prime_UTR 40.0%
! GCCATTGATTGTTGTTGTGT+TGG - chr4_1:74539690-74539709 Msa0571820:five_prime_UTR 40.0%
CTTGCCTTCTTTCAACTAGT+TGG - chr4_1:74539760-74539779 Msa0571820:five_prime_UTR 40.0%
ACGCTGAAAGATTGTCAAGG+AGG - chr4_1:74536594-74536613 Msa0571820:intron 45.0%
!! GGGGTGCTGATATTCATTCA+TGG - chr4_1:74536744-74536763 Msa0571820:intron 45.0%
! ACCCTTTTCTTGAGGAGTTG+AGG - chr4_1:74536789-74536808 Msa0571820:intron 45.0%
GCCTCAACTCCTCAAGAAAA+GGG + chr4_1:74536793-74536812 None:intergenic 45.0%
AGCCTCAACTCCTCAAGAAA+AGG + chr4_1:74536794-74536813 None:intergenic 45.0%
GGAGTTGAGGCTTAAGAGAA+TGG - chr4_1:74536802-74536821 Msa0571820:intron 45.0%
CTTTCTCTACTGAGCTGTGA+AGG - chr4_1:74536881-74536900 Msa0571820:intron 45.0%
!! AGGATTTAGCACTGATGGCT+TGG - chr4_1:74536901-74536920 Msa0571820:intron 45.0%
CAAGATCCTGGTTTCGAATC+TGG - chr4_1:74537027-74537046 Msa0571820:CDS 45.0%
CTTCATCCAGATTCGAAACC+AGG + chr4_1:74537036-74537055 None:intergenic 45.0%
CTCTACCGAAAAATGTCCGT+AGG + chr4_1:74537106-74537125 None:intergenic 45.0%
AAGCCTATCCTCATAGGACA+AGG + chr4_1:74537148-74537167 None:intergenic 45.0%
TTGTCCTATGAGGATAGGCT+TGG - chr4_1:74537147-74537166 Msa0571820:CDS 45.0%
TTAGCCAAGCCTATCCTCAT+AGG + chr4_1:74537154-74537173 None:intergenic 45.0%
!! TTGTTGTTTGTATGGCTGCC+TGG - chr4_1:74537177-74537196 Msa0571820:CDS 45.0%
TCGATGACAAAAGCGGTGAT+TGG - chr4_1:74537824-74537843 Msa0571820:CDS 45.0%
GATGCGCTTGAGAAACTTGT+CGG - chr4_1:74537922-74537941 Msa0571820:CDS 45.0%
TGCCAAGCTCACATAACTGA+GGG + chr4_1:74538026-74538045 None:intergenic 45.0%
AGCCACCCATAAACCAGAAA+GGG + chr4_1:74538130-74538149 None:intergenic 45.0%
AAGCCACCCATAAACCAGAA+AGG + chr4_1:74538131-74538150 None:intergenic 45.0%
TCCTAATCTTCGACGCCTTT+GGG - chr4_1:74538272-74538291 Msa0571820:CDS 45.0%
CAGGTAATCTGGCTGATTAG+GGG + chr4_1:74538661-74538680 None:intergenic 45.0%
GTCAGGTAATCTGGCTGATT+AGG + chr4_1:74538663-74538682 None:intergenic 45.0%
GGTTCATTCGTCAGGTAATC+TGG + chr4_1:74538672-74538691 None:intergenic 45.0%
CATCCATAGGTTCATTCGTC+AGG + chr4_1:74538680-74538699 None:intergenic 45.0%
GACGAATGAACCTATGGATG+AGG - chr4_1:74538680-74538699 Msa0571820:intron 45.0%
GGTCTTAACAACTGCTCCAA+AGG + chr4_1:74538706-74538725 None:intergenic 45.0%
GAGATAAGGGACTGTCCATT+CGG - chr4_1:74538894-74538913 Msa0571820:intron 45.0%
! TGCAGCACTTTTGTCTGGTT+TGG - chr4_1:74538920-74538939 Msa0571820:intron 45.0%
GAGAGTGAGAACAAATGGAG+GGG + chr4_1:74539129-74539148 None:intergenic 45.0%
CAGAGAGTGAGAACAAATGG+AGG + chr4_1:74539131-74539150 None:intergenic 45.0%
CCTCTTGAGCTTCAAAGTGT+AGG + chr4_1:74539170-74539189 None:intergenic 45.0%
!! CCTACACTTTGAAGCTCAAG+AGG - chr4_1:74539167-74539186 Msa0571820:CDS 45.0%
!!! GGTTTTGGGTAGTTGTGAAG+TGG + chr4_1:74539266-74539285 None:intergenic 45.0%
CCATATACGGTCACATTCCA+AGG + chr4_1:74539576-74539595 None:intergenic 45.0%
CCTTGGAATGTGACCGTATA+TGG - chr4_1:74539573-74539592 Msa0571820:CDS 45.0%
GTGACCGTATATGGCAAAGT+TGG - chr4_1:74539582-74539601 Msa0571820:CDS 45.0%
AGCCTCAGTAATATGGAAGG+TGG - chr4_1:74539619-74539638 Msa0571820:five_prime_UTR 45.0%
GGACCCAACTAGTTGAAAGA+AGG + chr4_1:74539767-74539786 None:intergenic 45.0%
CACACACAACTGCAAGATCC+TGG - chr4_1:74537015-74537034 Msa0571820:CDS 50.0%
CCGAAAAATGTCCGTAGGGT+GGG + chr4_1:74537101-74537120 None:intergenic 50.0%
! CCCACCCTACGGACATTTTT+CGG - chr4_1:74537098-74537117 Msa0571820:CDS 50.0%
ACCGAAAAATGTCCGTAGGG+TGG + chr4_1:74537102-74537121 None:intergenic 50.0%
CGCTTGAGAAACTTGTCGGT+AGG - chr4_1:74537926-74537945 Msa0571820:CDS 50.0%
GCCAAGCTCACATAACTGAG+GGG + chr4_1:74538025-74538044 None:intergenic 50.0%
CTGCCAAGCTCACATAACTG+AGG + chr4_1:74538027-74538046 None:intergenic 50.0%
CAGTTATGTGAGCTTGGCAG+TGG - chr4_1:74538027-74538046 Msa0571820:CDS 50.0%
!! CACCCTTTCTGGTTTATGGG+TGG - chr4_1:74538125-74538144 Msa0571820:CDS 50.0%
GTCCTAATCTTCGACGCCTT+TGG - chr4_1:74538271-74538290 Msa0571820:CDS 50.0%
!! ACCCAAAGGCGTCGAAGATT+AGG + chr4_1:74538276-74538295 None:intergenic 50.0%
CACAGTTGAAGACAAGGGAC+TGG - chr4_1:74538404-74538423 Msa0571820:intron 50.0%
! TTGCTGTCTCTGAAGGATGC+CGG - chr4_1:74538529-74538548 Msa0571820:intron 50.0%
AGAGGACGTAGTGAAGCTTC+CGG + chr4_1:74538551-74538570 None:intergenic 50.0%
GTCCCGACTTCACTCATTTC+CGG - chr4_1:74538622-74538641 Msa0571820:intron 50.0%
AGCCGGAAATGAGTGAAGTC+GGG + chr4_1:74538627-74538646 None:intergenic 50.0%
CAGCCGGAAATGAGTGAAGT+CGG + chr4_1:74538628-74538647 None:intergenic 50.0%
GAACCTATGGATGAGGCCTT+TGG - chr4_1:74538687-74538706 Msa0571820:intron 50.0%
AGACCTGCACTAAACTCCGA+AGG - chr4_1:74538721-74538740 Msa0571820:intron 50.0%
AAGCCTTCGGAGTTTAGTGC+AGG + chr4_1:74538727-74538746 None:intergenic 50.0%
CTCCGAAGGCTTTCTGTATC+AGG - chr4_1:74538735-74538754 Msa0571820:intron 50.0%
! ACGCTTTCAGTGGCTTTTGC+CGG - chr4_1:74538813-74538832 Msa0571820:intron 50.0%
! TTTTGCCGGAAGCAGTGACT+TGG - chr4_1:74538827-74538846 Msa0571820:intron 50.0%
TTTGCCGGAAGCAGTGACTT+GGG - chr4_1:74538828-74538847 Msa0571820:intron 50.0%
!! AAAAGTGCTGCATCGCCGAA+TGG + chr4_1:74538912-74538931 None:intergenic 50.0%
GTTGTGAAGTGGCTGCCATA+TGG + chr4_1:74539255-74539274 None:intergenic 50.0%
TAGACGCTAGACCCACCCTA+CGG - chr4_1:74537087-74537106 Msa0571820:CDS 55.0%
GCCCCTCAGTTATGTGAGCT+TGG - chr4_1:74538021-74538040 Msa0571820:CDS 55.0%
GACAAGGGACTGGAAGCTGT+TGG - chr4_1:74538414-74538433 Msa0571820:intron 55.0%
ACACGTAGCTCCTCGAGCAA+TGG + chr4_1:74538450-74538469 None:intergenic 55.0%
TCCTGCAGATCCCTTTGACG+AGG - chr4_1:74538473-74538492 Msa0571820:intron 55.0%
CCTGCAGATCCCTTTGACGA+GGG - chr4_1:74538474-74538493 Msa0571820:intron 55.0%
TGCACAACGCCCTCGTCAAA+GGG + chr4_1:74538486-74538505 None:intergenic 55.0%
!! TTTGACGAGGGCGTTGTGCA+CGG - chr4_1:74538486-74538505 Msa0571820:intron 55.0%
GTGCACGGGGTTACTGAATC+AGG - chr4_1:74538501-74538520 Msa0571820:intron 55.0%
TAGGGGTCATGATGCACAGC+CGG + chr4_1:74538644-74538663 None:intergenic 55.0%
GCTCCAAAGGCCTCATCCAT+AGG + chr4_1:74538693-74538712 None:intergenic 55.0%
TTGCCGGAAGCAGTGACTTG+GGG - chr4_1:74538829-74538848 Msa0571820:intron 55.0%
CATCCCCAAGTCACTGCTTC+CGG + chr4_1:74538835-74538854 None:intergenic 55.0%
GGGATGCAGTCTGTACTTGC+TGG - chr4_1:74538849-74538868 Msa0571820:intron 55.0%
! GGCGATGCAGCACTTTTGTC+TGG - chr4_1:74538915-74538934 Msa0571820:intron 55.0%
TTCTGTTGCCGGCCCAAGAA+GGG - chr4_1:74539100-74539119 Msa0571820:intron 55.0%
!! ATGGAGGGGCATCCCTTCTT+GGG + chr4_1:74539115-74539134 None:intergenic 55.0%
!! AATGGAGGGGCATCCCTTCT+TGG + chr4_1:74539116-74539135 None:intergenic 55.0%
CCCTCGTCAAAGGGATCTGC+AGG + chr4_1:74538477-74538496 None:intergenic 60.0%
GTGCACAACGCCCTCGTCAA+AGG + chr4_1:74538487-74538506 None:intergenic 60.0%
!! TTGACGAGGGCGTTGTGCAC+GGG - chr4_1:74538487-74538506 Msa0571820:intron 60.0%
GTTCTGTTGCCGGCCCAAGA+AGG - chr4_1:74539099-74539118 Msa0571820:intron 60.0%
!! TGACGAGGGCGTTGTGCACG+GGG - chr4_1:74538488-74538507 Msa0571820:intron 65.0%
!! AGGGGCATCCCTTCTTGGGC+CGG + chr4_1:74539111-74539130 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 74536139 74539964 74536139 ID=Msa0571820;Name=Msa0571820
chr4_1 mRNA 74536139 74539964 74536139 ID=Msa0571820-mRNA-1;Parent=Msa0571820;Name=Msa0571820-mRNA-1;_AED=0.12;_eAED=0.12;_QI=346|1|1|1|0.66|0.5|4|429|573
chr4_1 exon 74536139 74536530 74536139 ID=Msa0571820-mRNA-1:exon:25784;Parent=Msa0571820-mRNA-1
chr4_1 exon 74536915 74537707 74536915 ID=Msa0571820-mRNA-1:exon:25783;Parent=Msa0571820-mRNA-1
chr4_1 exon 74537810 74538314 74537810 ID=Msa0571820-mRNA-1:exon:25782;Parent=Msa0571820-mRNA-1
chr4_1 exon 74539158 74539964 74539158 ID=Msa0571820-mRNA-1:exon:25781;Parent=Msa0571820-mRNA-1
chr4_1 five_prime_UTR 74539619 74539964 74539619 ID=Msa0571820-mRNA-1:five_prime_utr;Parent=Msa0571820-mRNA-1
chr4_1 CDS 74539158 74539618 74539158 ID=Msa0571820-mRNA-1:cds;Parent=Msa0571820-mRNA-1
chr4_1 CDS 74537810 74538314 74537810 ID=Msa0571820-mRNA-1:cds;Parent=Msa0571820-mRNA-1
chr4_1 CDS 74536952 74537707 74536952 ID=Msa0571820-mRNA-1:cds;Parent=Msa0571820-mRNA-1
chr4_1 three_prime_UTR 74536915 74536951 74536915 ID=Msa0571820-mRNA-1:three_prime_utr;Parent=Msa0571820-mRNA-1
chr4_1 three_prime_UTR 74536139 74536530 74536139 ID=Msa0571820-mRNA-1:three_prime_utr;Parent=Msa0571820-mRNA-1
Gene Sequence

>Msa0571820

ATGGAGGAGTGTAAGAGAGACAAAGATGAAGTGTTGAAACAAGTTCTTGGAACAGTGAAGTCACACAAAGACAGAAATTCAGTTTCTTTAGTTTGCAAACAGTGGTACAACGCTGAAAGATTGTCAAGGAGGAATGTTTTCATAGGTAACTGTTATTCTGTCACTCCTGAGATCTTGACAAGTAGATTTCCAAACATAAGAAGTGTTACACTCAAAGGGAAGCCACGTTTCTCTGACTTCAACTTGGTTCCTGAAAATTGGGGTGCTGATATTCATTCATGGTTGGTTGTTTTTGCTGAAAAGTACCCTTTTCTTGAGGAGTTGAGGCTTAAGAGAATGGTTGTTACTGATGAGAGTTTAGAGTTTTTGGCTTTTTCTTTTCATAATTTCAAAGCACTTTCTCTACTGAGCTGTGAAGGATTTAGCACTGATGGCTTGGCTGCAGTTGCCACTAATTGCAAGAATTTAACCGAGCTTGACATACAAGAGAATGACATCGATGACAAAAGCGGTGATTGGTTGAGTTGCTTCCCAGAAAGCTTTACATCATTGGAAGTATTGAACTTTGCTAACCTAAACAATGATGTAAATATCGATGCGCTTGAGAAACTTGTCGGTAGGTGCAAATCTTTGAAGACTTTGAAGGTTAACAAAAGCGTAACGCTAGAACAGTTTCAAAGACTTCTTGTTCTTGCCCCTCAGTTATGTGAGCTTGGCAGTGGCTCATTTTCACAAGAGCTGACATGTCAGCAGTATTTAGAGCTCGAAAGCGCGTTCAACAATTGTAAGAGTATTCACACCCTTTCTGGTTTATGGGTGGCTTCAGCATCAGCACAATATATCCAACTTCAAGTTCTATACTCTGCATGCACAAATCTGACTTTCTTGAATTTTAGTTATGCTCTTGTTGACAGTGAAGATCTTACTGATCTTCTTATTCACTGTCCTAATCTTCGACGCCTTTGGGTTGTAGACACAGTTGAAGACAAGGGACTGGAAGCTGTTGGATCATATTGTCCATTGCTCGAGGAGCTACGTGTTTTTCCTGCAGATCCCTTTGACGAGGGCGTTGTGCACGGGGTTACTGAATCAGGTTTTATTGCTGTCTCTGAAGGATGCCGGAAGCTTCACTACGTCCTCTACTTTTGCCATCAGATGACAAATGATGCTGTTGCTACTGTTGTGCAAAACTGTCCCGACTTCACTCATTTCCGGCTGTGCATCATGACCCCTAATCAGCCAGATTACCTGACGAATGAACCTATGGATGAGGCCTTTGGAGCAGTTGTTAAGACCTGCACTAAACTCCGAAGGCTTTCTGTATCAGGTTATCTAACTGACCTCGCATTTGAGTATATAGGGAAGTATGCCAAAAACTTGGAAACGCTTTCAGTGGCTTTTGCCGGAAGCAGTGACTTGGGGATGCAGTCTGTACTTGCTGGCTGTCCGAAGCTGAGAAAACTTGAGATAAGGGACTGTCCATTCGGCGATGCAGCACTTTTGTCTGGTTTGGAGAAGTATGAGTCAATGAGATCACTTTGGATGTCGGACTGCCAAGTAACAATGAATGGATGTAGATTGTTAGCAAAAGAAAAGCCGAGGTTGAATGTTGAAGTAATTAAGGAAGAAGGAAGCGATGATAGTCATGCTGAAAAAGTTTATGTTTATCGTTCTGTTGCCGGCCCAAGAAGGGATGCCCCTCCATTTGTTCTCACTCTCTGA
Protein sequence

>Msa0571820

MEECKRDKDEVLKQVLGTVKSHKDRNSVSLVCKQWYNAERLSRRNVFIGNCYSVTPEILTSRFPNIRSVTLKGKPRFSDFNLVPENWGADIHSWLVVFAEKYPFLEELRLKRMVVTDESLEFLAFSFHNFKALSLLSCEGFSTDGLAAVATNCKNLTELDIQENDIDDKSGDWLSCFPESFTSLEVLNFANLNNDVNIDALEKLVGRCKSLKTLKVNKSVTLEQFQRLLVLAPQLCELGSGSFSQELTCQQYLELESAFNNCKSIHTLSGLWVASASAQYIQLQVLYSACTNLTFLNFSYALVDSEDLTDLLIHCPNLRRLWVVDTVEDKGLEAVGSYCPLLEELRVFPADPFDEGVVHGVTESGFIAVSEGCRKLHYVLYFCHQMTNDAVATVVQNCPDFTHFRLCIMTPNQPDYLTNEPMDEAFGAVVKTCTKLRRLSVSGYLTDLAFEYIGKYAKNLETLSVAFAGSSDLGMQSVLAGCPKLRKLEIRDCPFGDAALLSGLEKYESMRSLWMSDCQVTMNGCRLLAKEKPRLNVEVIKEEGSDDSHAEKVYVYRSVAGPRRDAPPFVLTL*