AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0140280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140280 MtrunA17_Chr3g0134261 95.184 353 11 3 1 352 1 348 0.0 684
Msa0140280 MtrunA17_Chr4g0053381 53.892 334 141 6 23 348 12 340 9.26e-112 330
Msa0140280 MtrunA17_Chr1g0208231 56.766 303 119 6 53 348 66 363 1.37e-110 327
Msa0140280 MtrunA17_Chr5g0412471 34.641 306 169 8 34 323 38 328 4.80e-46 160
Msa0140280 MtrunA17_Chr4g0041721 36.626 243 135 8 88 321 91 323 2.27e-43 153
Msa0140280 MtrunA17_Chr5g0414271 43.137 204 103 3 88 285 76 272 1.02e-41 148
Msa0140280 MtrunA17_Chr3g0133211 44.578 166 92 0 88 253 96 261 2.20e-40 145
Msa0140280 MtrunA17_Chr8g0364521 38.498 213 118 3 87 293 92 297 1.38e-37 138
Msa0140280 MtrunA17_Chr5g0427191 32.323 297 193 5 60 349 55 350 8.10e-36 133
Msa0140280 MtrunA17_Chr8g0367661 33.210 271 166 8 89 351 108 371 8.38e-32 123
Msa0140280 MtrunA17_Chr5g0401271 36.364 187 110 4 85 269 99 278 1.83e-30 119
Msa0140280 MtrunA17_Chr2g0280941 31.760 233 143 7 85 314 37 256 1.58e-27 108
Msa0140280 MtrunA17_Chr3g0134781 46.154 130 65 2 80 205 54 182 2.15e-27 109
Msa0140280 MtrunA17_Chr2g0323361 31.140 228 137 8 66 282 26 244 9.38e-23 96.7
Msa0140280 MtrunA17_Chr4g0054011 27.778 252 156 8 89 335 68 298 2.12e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140280 AT5G67260.1 47.826 345 160 9 11 348 17 348 3.09e-92 280
Msa0140280 AT5G67260.2 47.826 345 160 9 11 348 17 348 9.86e-92 280
Msa0140280 AT4G34160.1 52.174 276 122 4 10 285 17 282 1.40e-91 279
Msa0140280 AT3G50070.1 46.452 310 138 7 8 310 13 301 6.37e-84 259
Msa0140280 AT1G70210.1 40.086 232 130 5 58 282 47 276 2.38e-46 161
Msa0140280 AT2G22490.1 38.197 233 135 4 87 314 95 323 7.76e-44 155
Msa0140280 AT2G22490.2 38.197 233 136 3 87 314 95 324 7.80e-43 152
Msa0140280 AT5G65420.4 41.317 167 92 2 85 248 74 237 6.20e-34 126
Msa0140280 AT5G65420.1 34.322 236 135 5 85 317 74 292 7.61e-34 127
Msa0140280 AT5G65420.2 40.523 153 90 1 85 236 74 226 4.18e-33 123
Msa0140280 AT5G65420.3 32.927 246 135 6 85 317 74 302 1.05e-31 122
Msa0140280 AT5G10440.1 36.735 196 114 5 60 248 36 228 3.73e-28 112
Msa0140280 AT5G10440.2 35.294 187 116 4 60 241 36 222 6.49e-28 109
Msa0140280 AT4G03270.1 30.620 258 160 6 79 331 48 291 6.44e-23 97.8
Msa0140280 AT4G03270.2 30.620 258 159 7 79 331 48 290 2.02e-21 93.6
Msa0140280 AT4G37630.2 38.136 118 72 1 92 209 75 191 1.71e-20 90.1
Msa0140280 AT4G37630.3 39.669 121 68 3 92 209 75 193 2.03e-20 89.7
Msa0140280 AT4G37630.1 39.669 121 68 3 92 209 75 193 4.75e-20 90.1
Msa0140280 AT5G02110.1 32.099 162 105 3 85 245 74 231 3.44e-17 82.0
Msa0140280 AT5G02110.2 35.200 125 76 3 122 245 82 202 3.98e-13 69.7

Find 83 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAGCTTCTTGGTATTCT+TGG 0.183134 1_3:-74515594 Msa0140280:CDS
GTTTATTGTTGTGTTGTTTA+AGG 0.198020 1_3:+74516446 None:intergenic
GACATTTCCATTACACCTTT+TGG 0.225762 1_3:+74515341 None:intergenic
TCTTTCTCTTGCTGCTAAAA+TGG 0.227658 1_3:-74516136 Msa0140280:CDS
CTATAACCCAATGTTACTTT+TGG 0.238967 1_3:-74516544 Msa0140280:CDS
TGTTAGAAACCGACATGTTT+TGG 0.243497 1_3:-74516407 Msa0140280:CDS
GATGAGTTAGAGTTTGAGTT+TGG 0.256399 1_3:-74516483 Msa0140280:CDS
CAATGCAACAAACGCAAGTT+TGG 0.256632 1_3:-74515380 Msa0140280:CDS
TTCTCTTTATTGAGACAAAT+TGG 0.258321 1_3:+74516656 None:intergenic
TCTTGAAACCAACCCTGTTT+TGG 0.259066 1_3:-74516325 Msa0140280:CDS
GAAGCATTATGCTCTTATTA+TGG 0.259300 1_3:-74516636 Msa0140280:five_prime_UTR
AAAGTGGAAGTGGATTTATT+TGG 0.277922 1_3:+74514871 None:intergenic
CTTCGAGCAGTTTCCAAAAC+AGG 0.289915 1_3:+74516312 None:intergenic
GAAAAGCTAGCTAGCTATAG+AGG 0.323156 1_3:+74516678 None:intergenic
AGTCTTTCATGATTGATAAC+TGG 0.339927 1_3:+74515047 None:intergenic
GAGTTATCTACCTTCTGTTT+TGG 0.348297 1_3:-74515679 Msa0140280:CDS
GAATATCAAATCCAGCTTCT+TGG 0.360410 1_3:-74515603 Msa0140280:CDS
ATGAAGAGTTTAATAGAAAC+TGG 0.368473 1_3:+74515219 None:intergenic
TTGCTGTCAACTATCTTGAT+AGG 0.370220 1_3:-74516224 Msa0140280:CDS
AATAAATACACTAATTGATA+TGG 0.377674 1_3:+74514911 None:intergenic
CTTCTCTCTGTCATTAGATC+AGG 0.392447 1_3:-74515810 Msa0140280:intron
ATAAAAGAAAGAGGTGTTGC+TGG 0.406180 1_3:+74515906 None:intergenic
GATTGAAAGATCATCTTTGT+TGG 0.408339 1_3:-74515860 Msa0140280:CDS
TAGGCCCATCTCAGGATTCA+TGG 0.410227 1_3:+74515022 None:intergenic
GTGATAATTCCAATGATTCA+TGG 0.412862 1_3:-74515310 Msa0140280:CDS
AACAGCGTGGAGCCTAGTTT+AGG 0.414590 1_3:-74515630 Msa0140280:CDS
TTTATTTATTTATTTATTGG+TGG 0.418549 1_3:+74516746 None:intergenic
TTATTTATTTATTTATTGGT+GGG 0.425795 1_3:+74516747 None:intergenic
GAATCCTGAGATGGGCCTAT+AGG 0.426399 1_3:-74515018 Msa0140280:three_prime_UTR
GATCTCTGCTGTGGTCCTAT+AGG 0.429582 1_3:+74515003 None:intergenic
ATTGAAAGATCATCTTTGTT+GGG 0.438979 1_3:-74515859 Msa0140280:CDS
AATGCAACAAACGCAAGTTT+GGG 0.445846 1_3:-74515379 Msa0140280:CDS
AGAAGCTGATGTTGAAACTA+TGG 0.448803 1_3:-74515424 Msa0140280:CDS
TTTAGATGTATCATATAAAG+TGG 0.455994 1_3:+74514855 None:intergenic
GTTTCAAGAAAGATGTAAAG+TGG 0.463002 1_3:+74516339 None:intergenic
ATGAGTTAGAGTTTGAGTTT+GGG 0.468379 1_3:-74516482 Msa0140280:CDS
ATGGCTTCTCATTCTGAAAA+CGG 0.471458 1_3:+74516187 None:intergenic
TTCATGATTGATAACTGGTT+TGG 0.472099 1_3:+74515052 None:intergenic
AAGTAGTCCAAAAGGTGTAA+TGG 0.473331 1_3:-74515348 Msa0140280:CDS
CTCGAAGAGAATCTATTGAA+TGG 0.475440 1_3:-74516296 Msa0140280:CDS
TGATATTCATCTCCTAAACT+AGG 0.476214 1_3:+74515618 None:intergenic
TTCCAAGAATACCAAGAAGC+TGG 0.476633 1_3:+74515592 None:intergenic
AACGTATCCAAAAGTAACAT+TGG 0.480126 1_3:+74516537 None:intergenic
AGCTATAGAGGGAGAGGAGA+AGG 0.481015 1_3:+74516690 None:intergenic
TGCTATAGCCCATGAATCAT+TGG 0.482213 1_3:+74515301 None:intergenic
ACTTGAAGATCTAGCAAAAG+AGG 0.483959 1_3:+74516099 None:intergenic
CTGATGTTGAAACTATGGTC+AGG 0.487634 1_3:-74515419 Msa0140280:CDS
ATGACTATCTCTCATGCCTA+TGG 0.495562 1_3:-74515078 Msa0140280:three_prime_UTR
TGTATCATATAAAGTGGAAG+TGG 0.501083 1_3:+74514861 None:intergenic
TGGTCCTATAGGCCCATCTC+AGG 0.502257 1_3:+74515014 None:intergenic
TTTCAAGAAAGATGTAAAGT+GGG 0.508769 1_3:+74516340 None:intergenic
GTTCTGATCTTCTTAGACAA+AGG 0.512885 1_3:+74515248 None:intergenic
ACGTATCCAAAAGTAACATT+GGG 0.515111 1_3:+74516538 None:intergenic
GTACTGTTCAGAAGAACATT+GGG 0.522194 1_3:-74516514 Msa0140280:CDS
ACAAAATCAATAAAAGAAAG+AGG 0.523440 1_3:+74515897 None:intergenic
TGATAATTCCAATGATTCAT+GGG 0.525327 1_3:-74515309 Msa0140280:CDS
TCAATTCCAAGTAGTCCAAA+AGG 0.525691 1_3:-74515356 Msa0140280:CDS
ATCTTCTTAGACAAAGGCTC+TGG 0.533638 1_3:+74515254 None:intergenic
TGTACTGTTCAGAAGAACAT+TGG 0.536203 1_3:-74516515 Msa0140280:CDS
CTAGCTAGCTATAGAGGGAG+AGG 0.537487 1_3:+74516684 None:intergenic
TGATACTTTCAACTCTTGGA+TGG 0.538072 1_3:-74515938 Msa0140280:CDS
AGCAGTTTCCAAAACAGGGT+TGG 0.546697 1_3:+74516317 None:intergenic
GAGTTTCTTAAGAGATGTGA+AGG 0.552834 1_3:-74515837 Msa0140280:CDS
TTCGAGCAGTTTCCAAAACA+GGG 0.563113 1_3:+74516313 None:intergenic
CTCATCTCATATATCTAACA+TGG 0.566897 1_3:-74516577 Msa0140280:exon
ACTATCCATGAATCCTGAGA+TGG 0.568095 1_3:-74515027 Msa0140280:three_prime_UTR
ATCTAGCAAAAGAGGAACAT+GGG 0.578857 1_3:+74516107 None:intergenic
ATAACTGGTTTGGTGACCAT+AGG 0.580281 1_3:+74515062 None:intergenic
CTATGGTCAGGGTATGAAGA+GGG 0.582499 1_3:-74515407 Msa0140280:CDS
GATCTAGCAAAAGAGGAACA+TGG 0.582627 1_3:+74516106 None:intergenic
CTATCCATGAATCCTGAGAT+GGG 0.584232 1_3:-74515026 Msa0140280:three_prime_UTR
AAAAGCTAGCTAGCTATAGA+GGG 0.592546 1_3:+74516679 None:intergenic
GTAGCAGTTGCCAAAACAGA+AGG 0.597534 1_3:+74515669 None:intergenic
GCTGCAAGCTGAGTCATCCA+TGG 0.601969 1_3:+74516168 None:intergenic
TTCTAACAAAGAACAAGTAG+TGG 0.615213 1_3:+74516422 None:intergenic
AGGACCACAGCAGAGATCGT+TGG 0.616799 1_3:-74514998 Msa0140280:three_prime_UTR
TGATGTTGAAACTATGGTCA+GGG 0.619871 1_3:-74515418 Msa0140280:CDS
TTCATCGTCCCAAAACATGT+CGG 0.630209 1_3:+74516398 None:intergenic
CTGTTCAGAAGAACATTGGG+AGG 0.651953 1_3:-74516511 Msa0140280:CDS
AATGCCAACGATCTCTGCTG+TGG 0.662412 1_3:+74514994 None:intergenic
ACTATGGTCAGGGTATGAAG+AGG 0.670130 1_3:-74515408 Msa0140280:CDS
TATGGTCAGGGTATGAAGAG+GGG 0.674081 1_3:-74515406 Msa0140280:CDS
ATAATGGTTACAGGACAAGG+TGG 0.720472 1_3:-74515456 Msa0140280:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATTTATTTATTGGT+GGG + chr1_3:74514851-74514870 None:intergenic 10.0%
!! TTTATTTATTTATTTATTGG+TGG + chr1_3:74514852-74514871 None:intergenic 10.0%
!! TTATTTATTTATTTATTGGT+GGG + chr1_3:74514851-74514870 None:intergenic 10.0%
!! TTTATTTATTTATTTATTGG+TGG + chr1_3:74514852-74514871 None:intergenic 10.0%
!!! TTGTTTTTGAAATTTTGTTT+AGG - chr1_3:74515580-74515599 Msa0140280:intron 15.0%
!! TTAATATTAATGTGGAATAA+TGG - chr1_3:74516123-74516142 Msa0140280:CDS 15.0%
!!! TTTTTTTGCATAATGAAATA+GGG + chr1_3:74516429-74516448 None:intergenic 15.0%
!! AATAAATACACTAATTGATA+TGG + chr1_3:74516687-74516706 None:intergenic 15.0%
!!! TTGTTTTTGAAATTTTGTTT+AGG - chr1_3:74515580-74515599 Msa0140280:intron 15.0%
!! TTAATATTAATGTGGAATAA+TGG - chr1_3:74516123-74516142 Msa0140280:CDS 15.0%
!!! TTTTTTTGCATAATGAAATA+GGG + chr1_3:74516429-74516448 None:intergenic 15.0%
!! AATAAATACACTAATTGATA+TGG + chr1_3:74516687-74516706 None:intergenic 15.0%
!! ACAAAATCAATAAAAGAAAG+AGG + chr1_3:74515701-74515720 None:intergenic 20.0%
!!! CTTTTTTTGCATAATGAAAT+AGG + chr1_3:74516430-74516449 None:intergenic 20.0%
!!! ATGAAGTATTTTTCTTTTTG+AGG - chr1_3:74516476-74516495 Msa0140280:CDS 20.0%
!!! TGAAGTATTTTTCTTTTTGA+GGG - chr1_3:74516477-74516496 Msa0140280:CDS 20.0%
!! TTTAGATGTATCATATAAAG+TGG + chr1_3:74516743-74516762 None:intergenic 20.0%
!! ACAAAATCAATAAAAGAAAG+AGG + chr1_3:74515701-74515720 None:intergenic 20.0%
!!! CTTTTTTTGCATAATGAAAT+AGG + chr1_3:74516430-74516449 None:intergenic 20.0%
!!! ATGAAGTATTTTTCTTTTTG+AGG - chr1_3:74516476-74516495 Msa0140280:CDS 20.0%
!!! TGAAGTATTTTTCTTTTTGA+GGG - chr1_3:74516477-74516496 Msa0140280:CDS 20.0%
!! TTTAGATGTATCATATAAAG+TGG + chr1_3:74516743-74516762 None:intergenic 20.0%
! TTCTCTTTATTGAGACAAAT+TGG + chr1_3:74514942-74514961 None:intergenic 25.0%
!!! GTTTATTGTTGTGTTGTTTA+AGG + chr1_3:74515152-74515171 None:intergenic 25.0%
! TTTCAAGAAAGATGTAAAGT+GGG + chr1_3:74515258-74515277 None:intergenic 25.0%
!!! ATTTTGATACTTTCAACTCT+TGG - chr1_3:74515653-74515672 Msa0140280:CDS 25.0%
! ATTGAAAGATCATCTTTGTT+GGG - chr1_3:74515736-74515755 Msa0140280:intron 25.0%
! TACTTCTATAGTTGAAACTA+TGG - chr1_3:74516090-74516109 Msa0140280:intron 25.0%
! TGATAATTCCAATGATTCAT+GGG - chr1_3:74516286-74516305 Msa0140280:CDS 25.0%
! ATGAAGAGTTTAATAGAAAC+TGG + chr1_3:74516379-74516398 None:intergenic 25.0%
! TTCTCTTTATTGAGACAAAT+TGG + chr1_3:74514942-74514961 None:intergenic 25.0%
!!! GTTTATTGTTGTGTTGTTTA+AGG + chr1_3:74515152-74515171 None:intergenic 25.0%
! TTTCAAGAAAGATGTAAAGT+GGG + chr1_3:74515258-74515277 None:intergenic 25.0%
!!! ATTTTGATACTTTCAACTCT+TGG - chr1_3:74515653-74515672 Msa0140280:CDS 25.0%
! ATTGAAAGATCATCTTTGTT+GGG - chr1_3:74515736-74515755 Msa0140280:intron 25.0%
! TACTTCTATAGTTGAAACTA+TGG - chr1_3:74516090-74516109 Msa0140280:intron 25.0%
! TGATAATTCCAATGATTCAT+GGG - chr1_3:74516286-74516305 Msa0140280:CDS 25.0%
! ATGAAGAGTTTAATAGAAAC+TGG + chr1_3:74516379-74516398 None:intergenic 25.0%
! GAAGCATTATGCTCTTATTA+TGG - chr1_3:74514959-74514978 Msa0140280:three_prime_UTR 30.0%
CTCATCTCATATATCTAACA+TGG - chr1_3:74515018-74515037 Msa0140280:three_prime_UTR 30.0%
!!! CTATAACCCAATGTTACTTT+TGG - chr1_3:74515051-74515070 Msa0140280:three_prime_UTR 30.0%
ACGTATCCAAAAGTAACATT+GGG + chr1_3:74515060-74515079 None:intergenic 30.0%
AACGTATCCAAAAGTAACAT+TGG + chr1_3:74515061-74515080 None:intergenic 30.0%
! ATGAGTTAGAGTTTGAGTTT+GGG - chr1_3:74515113-74515132 Msa0140280:three_prime_UTR 30.0%
TTCTAACAAAGAACAAGTAG+TGG + chr1_3:74515176-74515195 None:intergenic 30.0%
GTTTCAAGAAAGATGTAAAG+TGG + chr1_3:74515259-74515278 None:intergenic 30.0%
!! TTTTGTTTCTTTCAAGAGCT+AGG + chr1_3:74515531-74515550 None:intergenic 30.0%
AGCAAAGACGATTAAAAAGA+TGG - chr1_3:74515628-74515647 Msa0140280:CDS 30.0%
! GATTTTGTCATAAGAAGACT+TGG - chr1_3:74515713-74515732 Msa0140280:intron 30.0%
GATTGAAAGATCATCTTTGT+TGG - chr1_3:74515735-74515754 Msa0140280:intron 30.0%
TGATATTCATCTCCTAAACT+AGG + chr1_3:74515980-74515999 None:intergenic 30.0%
TAATGTGGAATAATGGTTAC+AGG - chr1_3:74516130-74516149 Msa0140280:CDS 30.0%
GTGATAATTCCAATGATTCA+TGG - chr1_3:74516285-74516304 Msa0140280:CDS 30.0%
!! ATTTTTCTTTTTGAGGGACA+AGG - chr1_3:74516483-74516502 Msa0140280:CDS 30.0%
! TTCATGATTGATAACTGGTT+TGG + chr1_3:74516546-74516565 None:intergenic 30.0%
! AGTCTTTCATGATTGATAAC+TGG + chr1_3:74516551-74516570 None:intergenic 30.0%
! AAAGTGGAAGTGGATTTATT+TGG + chr1_3:74516727-74516746 None:intergenic 30.0%
TGTATCATATAAAGTGGAAG+TGG + chr1_3:74516737-74516756 None:intergenic 30.0%
! GAAGCATTATGCTCTTATTA+TGG - chr1_3:74514959-74514978 Msa0140280:three_prime_UTR 30.0%
CTCATCTCATATATCTAACA+TGG - chr1_3:74515018-74515037 Msa0140280:three_prime_UTR 30.0%
!!! CTATAACCCAATGTTACTTT+TGG - chr1_3:74515051-74515070 Msa0140280:three_prime_UTR 30.0%
ACGTATCCAAAAGTAACATT+GGG + chr1_3:74515060-74515079 None:intergenic 30.0%
AACGTATCCAAAAGTAACAT+TGG + chr1_3:74515061-74515080 None:intergenic 30.0%
! ATGAGTTAGAGTTTGAGTTT+GGG - chr1_3:74515113-74515132 Msa0140280:three_prime_UTR 30.0%
TTCTAACAAAGAACAAGTAG+TGG + chr1_3:74515176-74515195 None:intergenic 30.0%
GTTTCAAGAAAGATGTAAAG+TGG + chr1_3:74515259-74515278 None:intergenic 30.0%
!! TTTTGTTTCTTTCAAGAGCT+AGG + chr1_3:74515531-74515550 None:intergenic 30.0%
AGCAAAGACGATTAAAAAGA+TGG - chr1_3:74515628-74515647 Msa0140280:CDS 30.0%
! GATTTTGTCATAAGAAGACT+TGG - chr1_3:74515713-74515732 Msa0140280:intron 30.0%
GATTGAAAGATCATCTTTGT+TGG - chr1_3:74515735-74515754 Msa0140280:intron 30.0%
TGATATTCATCTCCTAAACT+AGG + chr1_3:74515980-74515999 None:intergenic 30.0%
TAATGTGGAATAATGGTTAC+AGG - chr1_3:74516130-74516149 Msa0140280:CDS 30.0%
GTGATAATTCCAATGATTCA+TGG - chr1_3:74516285-74516304 Msa0140280:CDS 30.0%
!! ATTTTTCTTTTTGAGGGACA+AGG - chr1_3:74516483-74516502 Msa0140280:CDS 30.0%
! TTCATGATTGATAACTGGTT+TGG + chr1_3:74516546-74516565 None:intergenic 30.0%
! AGTCTTTCATGATTGATAAC+TGG + chr1_3:74516551-74516570 None:intergenic 30.0%
! AAAGTGGAAGTGGATTTATT+TGG + chr1_3:74516727-74516746 None:intergenic 30.0%
TGTATCATATAAAGTGGAAG+TGG + chr1_3:74516737-74516756 None:intergenic 30.0%
AAAAGCTAGCTAGCTATAGA+GGG + chr1_3:74514919-74514938 None:intergenic 35.0%
TGTACTGTTCAGAAGAACAT+TGG - chr1_3:74515080-74515099 Msa0140280:three_prime_UTR 35.0%
GTACTGTTCAGAAGAACATT+GGG - chr1_3:74515081-74515100 Msa0140280:three_prime_UTR 35.0%
! GATGAGTTAGAGTTTGAGTT+TGG - chr1_3:74515112-74515131 Msa0140280:three_prime_UTR 35.0%
! TGTTAGAAACCGACATGTTT+TGG - chr1_3:74515188-74515207 Msa0140280:three_prime_UTR 35.0%
! GTTAGAAACCGACATGTTTT+GGG - chr1_3:74515189-74515208 Msa0140280:three_prime_UTR 35.0%
CTCGAAGAGAATCTATTGAA+TGG - chr1_3:74515299-74515318 Msa0140280:CDS 35.0%
TTGCTGTCAACTATCTTGAT+AGG - chr1_3:74515371-74515390 Msa0140280:CDS 35.0%
! ATGGCTTCTCATTCTGAAAA+CGG + chr1_3:74515411-74515430 None:intergenic 35.0%
TCTTTCTCTTGCTGCTAAAA+TGG - chr1_3:74515459-74515478 Msa0140280:intron 35.0%
ATCTAGCAAAAGAGGAACAT+GGG + chr1_3:74515491-74515510 None:intergenic 35.0%
ACTTGAAGATCTAGCAAAAG+AGG + chr1_3:74515499-74515518 None:intergenic 35.0%
TGATACTTTCAACTCTTGGA+TGG - chr1_3:74515657-74515676 Msa0140280:CDS 35.0%
!! ATAAAAGAAAGAGGTGTTGC+TGG + chr1_3:74515692-74515711 None:intergenic 35.0%
GAGTTTCTTAAGAGATGTGA+AGG - chr1_3:74515758-74515777 Msa0140280:intron 35.0%
! GAGTTATCTACCTTCTGTTT+TGG - chr1_3:74515916-74515935 Msa0140280:CDS 35.0%
GAATATCAAATCCAGCTTCT+TGG - chr1_3:74515992-74516011 Msa0140280:CDS 35.0%
AGAAGCTGATGTTGAAACTA+TGG - chr1_3:74516171-74516190 Msa0140280:CDS 35.0%
TGATGTTGAAACTATGGTCA+GGG - chr1_3:74516177-74516196 Msa0140280:CDS 35.0%
AATGCAACAAACGCAAGTTT+GGG - chr1_3:74516216-74516235 Msa0140280:CDS 35.0%
TCAATTCCAAGTAGTCCAAA+AGG - chr1_3:74516239-74516258 Msa0140280:CDS 35.0%
! ATTACACCTTTTGGACTACT+TGG + chr1_3:74516248-74516267 None:intergenic 35.0%
! AAGTAGTCCAAAAGGTGTAA+TGG - chr1_3:74516247-74516266 Msa0140280:CDS 35.0%
! GACATTTCCATTACACCTTT+TGG + chr1_3:74516257-74516276 None:intergenic 35.0%
GTTCTGATCTTCTTAGACAA+AGG + chr1_3:74516350-74516369 None:intergenic 35.0%
AAAAGCTAGCTAGCTATAGA+GGG + chr1_3:74514919-74514938 None:intergenic 35.0%
TGTACTGTTCAGAAGAACAT+TGG - chr1_3:74515080-74515099 Msa0140280:three_prime_UTR 35.0%
GTACTGTTCAGAAGAACATT+GGG - chr1_3:74515081-74515100 Msa0140280:three_prime_UTR 35.0%
! GATGAGTTAGAGTTTGAGTT+TGG - chr1_3:74515112-74515131 Msa0140280:three_prime_UTR 35.0%
! TGTTAGAAACCGACATGTTT+TGG - chr1_3:74515188-74515207 Msa0140280:three_prime_UTR 35.0%
! GTTAGAAACCGACATGTTTT+GGG - chr1_3:74515189-74515208 Msa0140280:three_prime_UTR 35.0%
CTCGAAGAGAATCTATTGAA+TGG - chr1_3:74515299-74515318 Msa0140280:CDS 35.0%
TTGCTGTCAACTATCTTGAT+AGG - chr1_3:74515371-74515390 Msa0140280:CDS 35.0%
! ATGGCTTCTCATTCTGAAAA+CGG + chr1_3:74515411-74515430 None:intergenic 35.0%
TCTTTCTCTTGCTGCTAAAA+TGG - chr1_3:74515459-74515478 Msa0140280:intron 35.0%
ATCTAGCAAAAGAGGAACAT+GGG + chr1_3:74515491-74515510 None:intergenic 35.0%
ACTTGAAGATCTAGCAAAAG+AGG + chr1_3:74515499-74515518 None:intergenic 35.0%
TGATACTTTCAACTCTTGGA+TGG - chr1_3:74515657-74515676 Msa0140280:CDS 35.0%
!! ATAAAAGAAAGAGGTGTTGC+TGG + chr1_3:74515692-74515711 None:intergenic 35.0%
GAGTTTCTTAAGAGATGTGA+AGG - chr1_3:74515758-74515777 Msa0140280:intron 35.0%
! GAGTTATCTACCTTCTGTTT+TGG - chr1_3:74515916-74515935 Msa0140280:CDS 35.0%
GAATATCAAATCCAGCTTCT+TGG - chr1_3:74515992-74516011 Msa0140280:CDS 35.0%
AGAAGCTGATGTTGAAACTA+TGG - chr1_3:74516171-74516190 Msa0140280:CDS 35.0%
TGATGTTGAAACTATGGTCA+GGG - chr1_3:74516177-74516196 Msa0140280:CDS 35.0%
AATGCAACAAACGCAAGTTT+GGG - chr1_3:74516216-74516235 Msa0140280:CDS 35.0%
TCAATTCCAAGTAGTCCAAA+AGG - chr1_3:74516239-74516258 Msa0140280:CDS 35.0%
! ATTACACCTTTTGGACTACT+TGG + chr1_3:74516248-74516267 None:intergenic 35.0%
! AAGTAGTCCAAAAGGTGTAA+TGG - chr1_3:74516247-74516266 Msa0140280:CDS 35.0%
! GACATTTCCATTACACCTTT+TGG + chr1_3:74516257-74516276 None:intergenic 35.0%
GTTCTGATCTTCTTAGACAA+AGG + chr1_3:74516350-74516369 None:intergenic 35.0%
GAAAAGCTAGCTAGCTATAG+AGG + chr1_3:74514920-74514939 None:intergenic 40.0%
TTCATCGTCCCAAAACATGT+CGG + chr1_3:74515200-74515219 None:intergenic 40.0%
! TCTTGAAACCAACCCTGTTT+TGG - chr1_3:74515270-74515289 Msa0140280:CDS 40.0%
TTCGAGCAGTTTCCAAAACA+GGG + chr1_3:74515285-74515304 None:intergenic 40.0%
! GTTTTCAGAATGAGAAGCCA+TGG - chr1_3:74515410-74515429 Msa0140280:CDS 40.0%
GATCTAGCAAAAGAGGAACA+TGG + chr1_3:74515492-74515511 None:intergenic 40.0%
CTTCTCTCTGTCATTAGATC+AGG - chr1_3:74515785-74515804 Msa0140280:intron 40.0%
!!! TGTTTTGGCAACTGCTACAA+TGG - chr1_3:74515931-74515950 Msa0140280:CDS 40.0%
ATCCAGCTTCTTGGTATTCT+TGG - chr1_3:74516001-74516020 Msa0140280:intron 40.0%
TTCCAAGAATACCAAGAAGC+TGG + chr1_3:74516006-74516025 None:intergenic 40.0%
GGAATAATGGTTACAGGACA+AGG - chr1_3:74516136-74516155 Msa0140280:CDS 40.0%
ATAATGGTTACAGGACAAGG+TGG - chr1_3:74516139-74516158 Msa0140280:CDS 40.0%
CTGATGTTGAAACTATGGTC+AGG - chr1_3:74516176-74516195 Msa0140280:CDS 40.0%
CAATGCAACAAACGCAAGTT+TGG - chr1_3:74516215-74516234 Msa0140280:CDS 40.0%
TGCTATAGCCCATGAATCAT+TGG + chr1_3:74516297-74516316 None:intergenic 40.0%
ATCTTCTTAGACAAAGGCTC+TGG + chr1_3:74516344-74516363 None:intergenic 40.0%
ATGACTATCTCTCATGCCTA+TGG - chr1_3:74516517-74516536 Msa0140280:CDS 40.0%
!! ATAACTGGTTTGGTGACCAT+AGG + chr1_3:74516536-74516555 None:intergenic 40.0%
ACTATCCATGAATCCTGAGA+TGG - chr1_3:74516568-74516587 Msa0140280:exon 40.0%
CTATCCATGAATCCTGAGAT+GGG - chr1_3:74516569-74516588 Msa0140280:exon 40.0%
! GAGATCGTTGGCATTTTATG+AGG - chr1_3:74516609-74516628 Msa0140280:five_prime_UTR 40.0%
GAAAAGCTAGCTAGCTATAG+AGG + chr1_3:74514920-74514939 None:intergenic 40.0%
TTCATCGTCCCAAAACATGT+CGG + chr1_3:74515200-74515219 None:intergenic 40.0%
! TCTTGAAACCAACCCTGTTT+TGG - chr1_3:74515270-74515289 Msa0140280:CDS 40.0%
TTCGAGCAGTTTCCAAAACA+GGG + chr1_3:74515285-74515304 None:intergenic 40.0%
! GTTTTCAGAATGAGAAGCCA+TGG - chr1_3:74515410-74515429 Msa0140280:CDS 40.0%
GATCTAGCAAAAGAGGAACA+TGG + chr1_3:74515492-74515511 None:intergenic 40.0%
CTTCTCTCTGTCATTAGATC+AGG - chr1_3:74515785-74515804 Msa0140280:intron 40.0%
!!! TGTTTTGGCAACTGCTACAA+TGG - chr1_3:74515931-74515950 Msa0140280:CDS 40.0%
ATCCAGCTTCTTGGTATTCT+TGG - chr1_3:74516001-74516020 Msa0140280:intron 40.0%
TTCCAAGAATACCAAGAAGC+TGG + chr1_3:74516006-74516025 None:intergenic 40.0%
GGAATAATGGTTACAGGACA+AGG - chr1_3:74516136-74516155 Msa0140280:CDS 40.0%
ATAATGGTTACAGGACAAGG+TGG - chr1_3:74516139-74516158 Msa0140280:CDS 40.0%
CTGATGTTGAAACTATGGTC+AGG - chr1_3:74516176-74516195 Msa0140280:CDS 40.0%
CAATGCAACAAACGCAAGTT+TGG - chr1_3:74516215-74516234 Msa0140280:CDS 40.0%
TGCTATAGCCCATGAATCAT+TGG + chr1_3:74516297-74516316 None:intergenic 40.0%
ATCTTCTTAGACAAAGGCTC+TGG + chr1_3:74516344-74516363 None:intergenic 40.0%
ATGACTATCTCTCATGCCTA+TGG - chr1_3:74516517-74516536 Msa0140280:CDS 40.0%
!! ATAACTGGTTTGGTGACCAT+AGG + chr1_3:74516536-74516555 None:intergenic 40.0%
ACTATCCATGAATCCTGAGA+TGG - chr1_3:74516568-74516587 Msa0140280:exon 40.0%
CTATCCATGAATCCTGAGAT+GGG - chr1_3:74516569-74516588 Msa0140280:exon 40.0%
! GAGATCGTTGGCATTTTATG+AGG - chr1_3:74516609-74516628 Msa0140280:five_prime_UTR 40.0%
CTGTTCAGAAGAACATTGGG+AGG - chr1_3:74515084-74515103 Msa0140280:three_prime_UTR 45.0%
AGCAGTTTCCAAAACAGGGT+TGG + chr1_3:74515281-74515300 None:intergenic 45.0%
CTTCGAGCAGTTTCCAAAAC+AGG + chr1_3:74515286-74515305 None:intergenic 45.0%
GTAGCAGTTGCCAAAACAGA+AGG + chr1_3:74515929-74515948 None:intergenic 45.0%
! GGTTCATGTTTTCAACAGCG+TGG - chr1_3:74515952-74515971 Msa0140280:CDS 45.0%
ACTATGGTCAGGGTATGAAG+AGG - chr1_3:74516187-74516206 Msa0140280:CDS 45.0%
CTATGGTCAGGGTATGAAGA+GGG - chr1_3:74516188-74516207 Msa0140280:CDS 45.0%
TATGGTCAGGGTATGAAGAG+GGG - chr1_3:74516189-74516208 Msa0140280:CDS 45.0%
CTGTTCAGAAGAACATTGGG+AGG - chr1_3:74515084-74515103 Msa0140280:three_prime_UTR 45.0%
AGCAGTTTCCAAAACAGGGT+TGG + chr1_3:74515281-74515300 None:intergenic 45.0%
CTTCGAGCAGTTTCCAAAAC+AGG + chr1_3:74515286-74515305 None:intergenic 45.0%
GTAGCAGTTGCCAAAACAGA+AGG + chr1_3:74515929-74515948 None:intergenic 45.0%
! GGTTCATGTTTTCAACAGCG+TGG - chr1_3:74515952-74515971 Msa0140280:CDS 45.0%
ACTATGGTCAGGGTATGAAG+AGG - chr1_3:74516187-74516206 Msa0140280:CDS 45.0%
CTATGGTCAGGGTATGAAGA+GGG - chr1_3:74516188-74516207 Msa0140280:CDS 45.0%
TATGGTCAGGGTATGAAGAG+GGG - chr1_3:74516189-74516208 Msa0140280:CDS 45.0%
!!! GTTTTTATTTATTTATTTAT+TGG + chr1_3:74514855-74514874 None:intergenic 5.0%
!! TATTAATATTAATATTAATG+TGG - chr1_3:74516115-74516134 Msa0140280:CDS 5.0%
!!! GTTTTTATTTATTTATTTAT+TGG + chr1_3:74514855-74514874 None:intergenic 5.0%
!! TATTAATATTAATATTAATG+TGG - chr1_3:74516115-74516134 Msa0140280:CDS 5.0%
AGCTATAGAGGGAGAGGAGA+AGG + chr1_3:74514908-74514927 None:intergenic 50.0%
CTAGCTAGCTATAGAGGGAG+AGG + chr1_3:74514914-74514933 None:intergenic 50.0%
AACAGCGTGGAGCCTAGTTT+AGG - chr1_3:74515965-74515984 Msa0140280:CDS 50.0%
TAGGCCCATCTCAGGATTCA+TGG + chr1_3:74516576-74516595 None:intergenic 50.0%
GAATCCTGAGATGGGCCTAT+AGG - chr1_3:74516577-74516596 Msa0140280:exon 50.0%
GATCTCTGCTGTGGTCCTAT+AGG + chr1_3:74516595-74516614 None:intergenic 50.0%
AATGCCAACGATCTCTGCTG+TGG + chr1_3:74516604-74516623 None:intergenic 50.0%
AGCTATAGAGGGAGAGGAGA+AGG + chr1_3:74514908-74514927 None:intergenic 50.0%
CTAGCTAGCTATAGAGGGAG+AGG + chr1_3:74514914-74514933 None:intergenic 50.0%
AACAGCGTGGAGCCTAGTTT+AGG - chr1_3:74515965-74515984 Msa0140280:CDS 50.0%
TAGGCCCATCTCAGGATTCA+TGG + chr1_3:74516576-74516595 None:intergenic 50.0%
GAATCCTGAGATGGGCCTAT+AGG - chr1_3:74516577-74516596 Msa0140280:exon 50.0%
GATCTCTGCTGTGGTCCTAT+AGG + chr1_3:74516595-74516614 None:intergenic 50.0%
AATGCCAACGATCTCTGCTG+TGG + chr1_3:74516604-74516623 None:intergenic 50.0%
GCTGCAAGCTGAGTCATCCA+TGG + chr1_3:74515430-74515449 None:intergenic 55.0%
TGGTCCTATAGGCCCATCTC+AGG + chr1_3:74516584-74516603 None:intergenic 55.0%
AGGACCACAGCAGAGATCGT+TGG - chr1_3:74516597-74516616 Msa0140280:five_prime_UTR 55.0%
GCTGCAAGCTGAGTCATCCA+TGG + chr1_3:74515430-74515449 None:intergenic 55.0%
TGGTCCTATAGGCCCATCTC+AGG + chr1_3:74516584-74516603 None:intergenic 55.0%
AGGACCACAGCAGAGATCGT+TGG - chr1_3:74516597-74516616 Msa0140280:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 74514842 74516775 74514842 ID=Msa0140280;Name=Msa0140280
chr1_3 mRNA 74514842 74516775 74514842 ID=Msa0140280-mRNA-1;Parent=Msa0140280;Name=Msa0140280-mRNA-1;_AED=0.08;_eAED=0.08;_QI=195|1|1|1|1|1|4|375|354
chr1_3 exon 74514842 74515465 74514842 ID=Msa0140280-mRNA-1:exon:25992;Parent=Msa0140280-mRNA-1
chr1_3 exon 74515584 74515714 74515584 ID=Msa0140280-mRNA-1:exon:25991;Parent=Msa0140280-mRNA-1
chr1_3 exon 74515811 74516015 74515811 ID=Msa0140280-mRNA-1:exon:25990;Parent=Msa0140280-mRNA-1
chr1_3 exon 74516101 74516775 74516101 ID=Msa0140280-mRNA-1:exon:25989;Parent=Msa0140280-mRNA-1
chr1_3 five_prime_UTR 74516581 74516775 74516581 ID=Msa0140280-mRNA-1:five_prime_utr;Parent=Msa0140280-mRNA-1
chr1_3 CDS 74516101 74516580 74516101 ID=Msa0140280-mRNA-1:cds;Parent=Msa0140280-mRNA-1
chr1_3 CDS 74515811 74516015 74515811 ID=Msa0140280-mRNA-1:cds;Parent=Msa0140280-mRNA-1
chr1_3 CDS 74515584 74515714 74515584 ID=Msa0140280-mRNA-1:cds;Parent=Msa0140280-mRNA-1
chr1_3 CDS 74515217 74515465 74515217 ID=Msa0140280-mRNA-1:cds;Parent=Msa0140280-mRNA-1
chr1_3 three_prime_UTR 74514842 74515216 74514842 ID=Msa0140280-mRNA-1:three_prime_utr;Parent=Msa0140280-mRNA-1
Gene Sequence

>Msa0140280

ATGGCTCAACAACACTATAACCCAATGTTACTTTTGGATACGTTGTACTGTTCAGAAGAACATTGGGAGGAACAAGATGAGTTAGAGTTTGAGTTTGGGTACGATAATGTTTCCTTAAACAACACAACAATAAACACCACTACTTGTTCTTTGTTAGAAACCGACATGTTTTGGGACGATGAAGAACTAAAATCACTTCTCAACAAAGAACAACAAAACCCACTTTACATCTTTCTTGAAACCAACCCTGTTTTGGAAACTGCTCGAAGAGAATCTATTGAATGGATTCTCAAAGTGAATGCTCATTACTCTTTCTCAGCTCTTACTGCTGTTCTTGCTGTCAACTATCTTGATAGGTTTCTCTTCAGTTTCCGTTTTCAGAATGAGAAGCCATGGATGACTCAGCTTGCAGCTGTTGCTTGTCTTTCTCTTGCTGCTAAAATGGAAGAGACCCATGTTCCTCTTTTGCTAGATCTTCAAGTTGAAGAGAGTAGATACTTGTTTGAAGCAAAGACGATTAAAAAGATGGAGATTTTGATACTTTCAACTCTTGGATGGAAGATGAGTCCAGCAACACCTCTTTCTTTTATTGATTTTGTCATAAGAAGACTTGGATTGAAAGATCATCTTTGTTGGGAGTTTCTTAAGAGATGTGAAGGTGTTCTTCTCTCTGTCATTAGATCAGATTCTAAGTTTATGAGTTATCTACCTTCTGTTTTGGCAACTGCTACAATGGTTCATGTTTTCAACAGCGTGGAGCCTAGTTTAGGAGATGAATATCAAATCCAGCTTCTTGGTATTCTTGGAATCAACAAAGACAAGGTGGATGAATGTGAGAAGCTGATGTTGAAACTATGGTCAGGGTATGAAGAGGGGAATCAATGCAACAAACGCAAGTTTGGGTCAATTCCAAGTAGTCCAAAAGGTGTAATGGAAATGTCGTTTAGCTGTGATAATTCCAATGATTCATGGGCTATAGCAGCAACAGCTTCTGTATCATCTTCACCAGAGCCTTTGTCTAAGAAGATCAGAACTCAAGACCAGTTTCTATTAAACTCTTCATAG

Protein sequence

>Msa0140280

MAQQHYNPMLLLDTLYCSEEHWEEQDELEFEFGYDNVSLNNTTINTTTCSLLETDMFWDDEELKSLLNKEQQNPLYIFLETNPVLETARRESIEWILKVNAHYSFSALTAVLAVNYLDRFLFSFRFQNEKPWMTQLAAVACLSLAAKMEETHVPLLLDLQVEESRYLFEAKTIKKMEILILSTLGWKMSPATPLSFIDFVIRRLGLKDHLCWEFLKRCEGVLLSVIRSDSKFMSYLPSVLATATMVHVFNSVEPSLGDEYQIQLLGILGINKDKVDECEKLMLKLWSGYEEGNQCNKRKFGSIPSSPKGVMEMSFSCDNSNDSWAIAATASVSSSPEPLSKKIRTQDQFLLNSS*