AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0430300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430300 MtrunA17_Chr3g0134261 94.944 178 7 2 1 177 172 348 1.21e-120 344
Msa0430300 MtrunA17_Chr4g0053381 53.977 176 74 3 1 173 169 340 5.31e-55 177
Msa0430300 MtrunA17_Chr1g0208231 52.571 175 76 4 1 173 194 363 1.11e-53 175
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430300 AT5G67260.1 46.328 177 80 5 1 173 183 348 4.72e-39 137
Msa0430300 AT5G67260.2 46.328 177 80 5 1 173 183 348 6.42e-39 137
Msa0430300 AT4G34160.1 54.545 110 49 1 1 110 174 282 4.79e-33 121
Msa0430300 AT3G50070.1 44.526 137 66 3 1 135 173 301 6.72e-29 110

Find 80 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAGCTTCTTGGTATTCT+TGG 0.183134 3_2:+82035571 Msa0430300:CDS
GTTTATTGTTGTGTTGTTTA+AGG 0.198020 3_2:-82034719 None:intergenic
GACATTTCCATTACACCTTT+TGG 0.225762 3_2:-82035824 None:intergenic
TCTTTCTCTTGCTGCTAAAA+TGG 0.227658 3_2:+82035029 Msa0430300:five_prime_UTR
CTATAACCCAATGTTACTTT+TGG 0.238967 3_2:+82034621 Msa0430300:five_prime_UTR
TGTTAGAAACCGACATGTTT+TGG 0.243497 3_2:+82034758 Msa0430300:five_prime_UTR
CAATGCAACAAACGCAAGTT+TGG 0.256632 3_2:+82035785 Msa0430300:CDS
TTCTCTTTATTGAGACAAAT+TGG 0.258321 3_2:-82034512 None:intergenic
TCTTGAAACCAACCCTGTTT+TGG 0.259066 3_2:+82034840 Msa0430300:five_prime_UTR
GAAGCATTATGCTCTTATTA+TGG 0.259300 3_2:+82034532 Msa0430300:five_prime_UTR
AAAGTGGAAGTGGATTTATT+TGG 0.277922 3_2:-82036295 None:intergenic
CTTCGAGCAGTTTCCAAAAC+AGG 0.289915 3_2:-82034853 None:intergenic
AGTCTTTCATGATTGATAAC+TGG 0.339927 3_2:-82036118 None:intergenic
GAGTTATCTACCTTCTGTTT+TGG 0.348297 3_2:+82035486 Msa0430300:CDS
GAATATCAAATCCAGCTTCT+TGG 0.360410 3_2:+82035562 Msa0430300:CDS
ATGAAGAGTTTAATAGAAAC+TGG 0.368473 3_2:-82035946 None:intergenic
TTGCTGTCAACTATCTTGAT+AGG 0.370220 3_2:+82034941 Msa0430300:five_prime_UTR
AATAAATACACTAATTGATA+TGG 0.377674 3_2:-82036255 None:intergenic
CTTCTCTCTGTCATTAGATC+AGG 0.392447 3_2:+82035355 Msa0430300:CDS
ATAAAAGAAAGAGGTGTTGC+TGG 0.406180 3_2:-82035259 None:intergenic
GATTGAAAGATCATCTTTGT+TGG 0.408339 3_2:+82035305 Msa0430300:CDS
TAGGCCCATCTCAGGATTCA+TGG 0.410227 3_2:-82036143 None:intergenic
TTATTTATTTATTTATTGGT+TGG 0.410943 3_2:-82034429 None:intergenic
GTGATAATTCCAATGATTCA+TGG 0.412862 3_2:+82035855 Msa0430300:CDS
AACAGCGTGGAGCCTAGTTT+AGG 0.414590 3_2:+82035535 Msa0430300:CDS
AGCTGTAGAGGGAGAGGAGA+AGG 0.426296 3_2:-82034486 None:intergenic
GAATCCTGAGATGGGCCTAT+AGG 0.426399 3_2:+82036147 Msa0430300:three_prime_UTR
GATCTCTGCTGTGGTCCTAT+AGG 0.429582 3_2:-82036162 None:intergenic
ATTGAAAGATCATCTTTGTT+GGG 0.438979 3_2:+82035306 Msa0430300:CDS
AATGCAACAAACGCAAGTTT+GGG 0.445846 3_2:+82035786 Msa0430300:CDS
AGAAGCTGATGTTGAAACTA+TGG 0.448803 3_2:+82035741 Msa0430300:CDS
TTTAGATGTATCATATAAAG+TGG 0.455994 3_2:-82036311 None:intergenic
TGGAAAAGCTGTAGAGGGAG+AGG 0.460441 3_2:-82034492 None:intergenic
GTTTCAAGAAAGATGTAAAG+TGG 0.463002 3_2:-82034826 None:intergenic
ATGGCTTCTCATTCTGAAAA+CGG 0.471458 3_2:-82034978 None:intergenic
TTCATGATTGATAACTGGTT+TGG 0.472099 3_2:-82036113 None:intergenic
AAGTAGTCCAAAAGGTGTAA+TGG 0.473331 3_2:+82035817 Msa0430300:CDS
CTCGAAGAGAATCTATTGAA+TGG 0.475440 3_2:+82034869 Msa0430300:five_prime_UTR
TGATATTCATCTCCTAAACT+AGG 0.476214 3_2:-82035547 None:intergenic
TTCCAAGAATACCAAGAAGC+TGG 0.476633 3_2:-82035573 None:intergenic
AACGTATCCAAAAGTAACAT+TGG 0.480126 3_2:-82034628 None:intergenic
TGCTATAGCCCATGAATCAT+TGG 0.482213 3_2:-82035864 None:intergenic
ACTTGAAGATCTAGCAAAAG+AGG 0.483959 3_2:-82035066 None:intergenic
CTGATGTTGAAACTATGGTC+AGG 0.487634 3_2:+82035746 Msa0430300:CDS
ATGACTATCTCTCATGCCTA+TGG 0.495562 3_2:+82036087 Msa0430300:three_prime_UTR
TGTATCATATAAAGTGGAAG+TGG 0.501083 3_2:-82036305 None:intergenic
TGGTCCTATAGGCCCATCTC+AGG 0.502257 3_2:-82036151 None:intergenic
TTTCAAGAAAGATGTAAAGT+GGG 0.508769 3_2:-82034825 None:intergenic
GTTCTGATCTTCTTAGACAA+AGG 0.512885 3_2:-82035917 None:intergenic
ACGTATCCAAAAGTAACATT+GGG 0.515111 3_2:-82034627 None:intergenic
GTACTGTTCAGAAGAACATT+GGG 0.522194 3_2:+82034651 Msa0430300:five_prime_UTR
ACAAAATCAATAAAAGAAAG+AGG 0.523440 3_2:-82035268 None:intergenic
ACAAATTGGAAAAGCTGTAG+AGG 0.524330 3_2:-82034498 None:intergenic
TGATAATTCCAATGATTCAT+GGG 0.525327 3_2:+82035856 Msa0430300:CDS
TCAATTCCAAGTAGTCCAAA+AGG 0.525691 3_2:+82035809 Msa0430300:CDS
ATCTTCTTAGACAAAGGCTC+TGG 0.533638 3_2:-82035911 None:intergenic
TGTACTGTTCAGAAGAACAT+TGG 0.536203 3_2:+82034650 Msa0430300:five_prime_UTR
TGATACTTTCAACTCTTGGA+TGG 0.538072 3_2:+82035227 Msa0430300:CDS
AGCAGTTTCCAAAACAGGGT+TGG 0.546697 3_2:-82034848 None:intergenic
GAGTTTCTTAAGAGATGTGA+AGG 0.552834 3_2:+82035328 Msa0430300:CDS
TTCGAGCAGTTTCCAAAACA+GGG 0.563113 3_2:-82034852 None:intergenic
CTCATCTCATATATCTAACA+TGG 0.566897 3_2:+82034591 Msa0430300:five_prime_UTR
ACTATCCATGAATCCTGAGA+TGG 0.568095 3_2:+82036138 Msa0430300:three_prime_UTR
ATCTAGCAAAAGAGGAACAT+GGG 0.578857 3_2:-82035058 None:intergenic
ATAACTGGTTTGGTGACCAT+AGG 0.580281 3_2:-82036103 None:intergenic
CTATGGTCAGGGTATGAAGA+GGG 0.582499 3_2:+82035758 Msa0430300:CDS
GATCTAGCAAAAGAGGAACA+TGG 0.582627 3_2:-82035059 None:intergenic
CTATCCATGAATCCTGAGAT+GGG 0.584232 3_2:+82036139 Msa0430300:three_prime_UTR
GTAGCAGTTGCCAAAACAGA+AGG 0.597534 3_2:-82035496 None:intergenic
GCTGCAAGCTGAGTCATCCA+TGG 0.601969 3_2:-82034997 None:intergenic
TTCTAACAAAGAACAAGTAG+TGG 0.615213 3_2:-82034743 None:intergenic
AGGACCACAGCAGAGATCGT+TGG 0.616799 3_2:+82036167 Msa0430300:three_prime_UTR
TGATGTTGAAACTATGGTCA+GGG 0.619871 3_2:+82035747 Msa0430300:CDS
CAAATTGGAAAAGCTGTAGA+GGG 0.627441 3_2:-82034497 None:intergenic
TTCATCGTCCCAAAACATGT+CGG 0.630209 3_2:-82034767 None:intergenic
CTGTTCAGAAGAACATTGGG+AGG 0.651953 3_2:+82034654 Msa0430300:five_prime_UTR
AATGCCAACGATCTCTGCTG+TGG 0.662412 3_2:-82036171 None:intergenic
ACTATGGTCAGGGTATGAAG+AGG 0.670130 3_2:+82035757 Msa0430300:CDS
TATGGTCAGGGTATGAAGAG+GGG 0.674081 3_2:+82035759 Msa0430300:CDS
ATAATGGTTACAGGACAAGG+TGG 0.720472 3_2:+82035709 Msa0430300:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATTTATTTATTGGT+TGG - chr3_2:82034432-82034451 None:intergenic 10.0%
!!! TTGTTTTTGAAATTTTGTTT+AGG + chr3_2:82035150-82035169 Msa0430300:five_prime_UTR 15.0%
!! TTAATATTAATGTGGAATAA+TGG + chr3_2:82035693-82035712 Msa0430300:intron 15.0%
!!! TTTTTTTGCATAATGAAATA+GGG - chr3_2:82035999-82036018 None:intergenic 15.0%
!! AATAAATACACTAATTGATA+TGG - chr3_2:82036258-82036277 None:intergenic 15.0%
!!! TTGTTTTTGAAATTTTGTTT+AGG + chr3_2:82035150-82035169 Msa0430300:five_prime_UTR 15.0%
!! TTAATATTAATGTGGAATAA+TGG + chr3_2:82035693-82035712 Msa0430300:intron 15.0%
!!! TTTTTTTGCATAATGAAATA+GGG - chr3_2:82035999-82036018 None:intergenic 15.0%
!! AATAAATACACTAATTGATA+TGG - chr3_2:82036258-82036277 None:intergenic 15.0%
!! ACAAAATCAATAAAAGAAAG+AGG - chr3_2:82035271-82035290 None:intergenic 20.0%
!!! CTTTTTTTGCATAATGAAAT+AGG - chr3_2:82036000-82036019 None:intergenic 20.0%
!!! ATGAAGTATTTTTCTTTTTG+AGG + chr3_2:82036046-82036065 Msa0430300:three_prime_UTR 20.0%
!!! TGAAGTATTTTTCTTTTTGA+GGG + chr3_2:82036047-82036066 Msa0430300:three_prime_UTR 20.0%
!! TTTAGATGTATCATATAAAG+TGG - chr3_2:82036314-82036333 None:intergenic 20.0%
!! ACAAAATCAATAAAAGAAAG+AGG - chr3_2:82035271-82035290 None:intergenic 20.0%
!!! CTTTTTTTGCATAATGAAAT+AGG - chr3_2:82036000-82036019 None:intergenic 20.0%
!!! ATGAAGTATTTTTCTTTTTG+AGG + chr3_2:82036046-82036065 Msa0430300:three_prime_UTR 20.0%
!!! TGAAGTATTTTTCTTTTTGA+GGG + chr3_2:82036047-82036066 Msa0430300:three_prime_UTR 20.0%
!! TTTAGATGTATCATATAAAG+TGG - chr3_2:82036314-82036333 None:intergenic 20.0%
! TTCTCTTTATTGAGACAAAT+TGG - chr3_2:82034515-82034534 None:intergenic 25.0%
!!! GTTTATTGTTGTGTTGTTTA+AGG - chr3_2:82034722-82034741 None:intergenic 25.0%
! TTTCAAGAAAGATGTAAAGT+GGG - chr3_2:82034828-82034847 None:intergenic 25.0%
!!! ATTTTGATACTTTCAACTCT+TGG + chr3_2:82035223-82035242 Msa0430300:CDS 25.0%
! ATTGAAAGATCATCTTTGTT+GGG + chr3_2:82035306-82035325 Msa0430300:CDS 25.0%
! TACTTCTATAGTTGAAACTA+TGG + chr3_2:82035660-82035679 Msa0430300:intron 25.0%
! TGATAATTCCAATGATTCAT+GGG + chr3_2:82035856-82035875 Msa0430300:CDS 25.0%
! ATGAAGAGTTTAATAGAAAC+TGG - chr3_2:82035949-82035968 None:intergenic 25.0%
! TTCTCTTTATTGAGACAAAT+TGG - chr3_2:82034515-82034534 None:intergenic 25.0%
!!! GTTTATTGTTGTGTTGTTTA+AGG - chr3_2:82034722-82034741 None:intergenic 25.0%
! TTTCAAGAAAGATGTAAAGT+GGG - chr3_2:82034828-82034847 None:intergenic 25.0%
!!! ATTTTGATACTTTCAACTCT+TGG + chr3_2:82035223-82035242 Msa0430300:CDS 25.0%
! ATTGAAAGATCATCTTTGTT+GGG + chr3_2:82035306-82035325 Msa0430300:CDS 25.0%
! TACTTCTATAGTTGAAACTA+TGG + chr3_2:82035660-82035679 Msa0430300:intron 25.0%
! TGATAATTCCAATGATTCAT+GGG + chr3_2:82035856-82035875 Msa0430300:CDS 25.0%
! ATGAAGAGTTTAATAGAAAC+TGG - chr3_2:82035949-82035968 None:intergenic 25.0%
! GAAGCATTATGCTCTTATTA+TGG + chr3_2:82034532-82034551 Msa0430300:five_prime_UTR 30.0%
CTCATCTCATATATCTAACA+TGG + chr3_2:82034591-82034610 Msa0430300:five_prime_UTR 30.0%
!!! CTATAACCCAATGTTACTTT+TGG + chr3_2:82034621-82034640 Msa0430300:five_prime_UTR 30.0%
ACGTATCCAAAAGTAACATT+GGG - chr3_2:82034630-82034649 None:intergenic 30.0%
AACGTATCCAAAAGTAACAT+TGG - chr3_2:82034631-82034650 None:intergenic 30.0%
TTCTAACAAAGAACAAGTAG+TGG - chr3_2:82034746-82034765 None:intergenic 30.0%
GTTTCAAGAAAGATGTAAAG+TGG - chr3_2:82034829-82034848 None:intergenic 30.0%
!! TTTTGTTTCTTTCAAGAGCT+AGG - chr3_2:82035101-82035120 None:intergenic 30.0%
AGCAAAGACGATTAAAAAGA+TGG + chr3_2:82035198-82035217 Msa0430300:intron 30.0%
! GATTTTGTCATAAGAAGACT+TGG + chr3_2:82035283-82035302 Msa0430300:CDS 30.0%
GATTGAAAGATCATCTTTGT+TGG + chr3_2:82035305-82035324 Msa0430300:CDS 30.0%
TGATATTCATCTCCTAAACT+AGG - chr3_2:82035550-82035569 None:intergenic 30.0%
TAATGTGGAATAATGGTTAC+AGG + chr3_2:82035700-82035719 Msa0430300:intron 30.0%
GTGATAATTCCAATGATTCA+TGG + chr3_2:82035855-82035874 Msa0430300:CDS 30.0%
!! ATTTTTCTTTTTGAGGGACA+AGG + chr3_2:82036053-82036072 Msa0430300:three_prime_UTR 30.0%
! TTCATGATTGATAACTGGTT+TGG - chr3_2:82036116-82036135 None:intergenic 30.0%
! AGTCTTTCATGATTGATAAC+TGG - chr3_2:82036121-82036140 None:intergenic 30.0%
! AAAGTGGAAGTGGATTTATT+TGG - chr3_2:82036298-82036317 None:intergenic 30.0%
TGTATCATATAAAGTGGAAG+TGG - chr3_2:82036308-82036327 None:intergenic 30.0%
! GAAGCATTATGCTCTTATTA+TGG + chr3_2:82034532-82034551 Msa0430300:five_prime_UTR 30.0%
CTCATCTCATATATCTAACA+TGG + chr3_2:82034591-82034610 Msa0430300:five_prime_UTR 30.0%
!!! CTATAACCCAATGTTACTTT+TGG + chr3_2:82034621-82034640 Msa0430300:five_prime_UTR 30.0%
ACGTATCCAAAAGTAACATT+GGG - chr3_2:82034630-82034649 None:intergenic 30.0%
AACGTATCCAAAAGTAACAT+TGG - chr3_2:82034631-82034650 None:intergenic 30.0%
TTCTAACAAAGAACAAGTAG+TGG - chr3_2:82034746-82034765 None:intergenic 30.0%
GTTTCAAGAAAGATGTAAAG+TGG - chr3_2:82034829-82034848 None:intergenic 30.0%
!! TTTTGTTTCTTTCAAGAGCT+AGG - chr3_2:82035101-82035120 None:intergenic 30.0%
AGCAAAGACGATTAAAAAGA+TGG + chr3_2:82035198-82035217 Msa0430300:intron 30.0%
! GATTTTGTCATAAGAAGACT+TGG + chr3_2:82035283-82035302 Msa0430300:CDS 30.0%
GATTGAAAGATCATCTTTGT+TGG + chr3_2:82035305-82035324 Msa0430300:CDS 30.0%
TGATATTCATCTCCTAAACT+AGG - chr3_2:82035550-82035569 None:intergenic 30.0%
TAATGTGGAATAATGGTTAC+AGG + chr3_2:82035700-82035719 Msa0430300:intron 30.0%
GTGATAATTCCAATGATTCA+TGG + chr3_2:82035855-82035874 Msa0430300:CDS 30.0%
!! ATTTTTCTTTTTGAGGGACA+AGG + chr3_2:82036053-82036072 Msa0430300:three_prime_UTR 30.0%
! TTCATGATTGATAACTGGTT+TGG - chr3_2:82036116-82036135 None:intergenic 30.0%
! AGTCTTTCATGATTGATAAC+TGG - chr3_2:82036121-82036140 None:intergenic 30.0%
! AAAGTGGAAGTGGATTTATT+TGG - chr3_2:82036298-82036317 None:intergenic 30.0%
TGTATCATATAAAGTGGAAG+TGG - chr3_2:82036308-82036327 None:intergenic 30.0%
CAAATTGGAAAAGCTGTAGA+GGG - chr3_2:82034500-82034519 None:intergenic 35.0%
ACAAATTGGAAAAGCTGTAG+AGG - chr3_2:82034501-82034520 None:intergenic 35.0%
TGTACTGTTCAGAAGAACAT+TGG + chr3_2:82034650-82034669 Msa0430300:five_prime_UTR 35.0%
GTACTGTTCAGAAGAACATT+GGG + chr3_2:82034651-82034670 Msa0430300:five_prime_UTR 35.0%
! TGTTAGAAACCGACATGTTT+TGG + chr3_2:82034758-82034777 Msa0430300:five_prime_UTR 35.0%
! GTTAGAAACCGACATGTTTT+GGG + chr3_2:82034759-82034778 Msa0430300:five_prime_UTR 35.0%
CTCGAAGAGAATCTATTGAA+TGG + chr3_2:82034869-82034888 Msa0430300:five_prime_UTR 35.0%
TTGCTGTCAACTATCTTGAT+AGG + chr3_2:82034941-82034960 Msa0430300:five_prime_UTR 35.0%
! ATGGCTTCTCATTCTGAAAA+CGG - chr3_2:82034981-82035000 None:intergenic 35.0%
TCTTTCTCTTGCTGCTAAAA+TGG + chr3_2:82035029-82035048 Msa0430300:five_prime_UTR 35.0%
ATCTAGCAAAAGAGGAACAT+GGG - chr3_2:82035061-82035080 None:intergenic 35.0%
ACTTGAAGATCTAGCAAAAG+AGG - chr3_2:82035069-82035088 None:intergenic 35.0%
TGATACTTTCAACTCTTGGA+TGG + chr3_2:82035227-82035246 Msa0430300:CDS 35.0%
!! ATAAAAGAAAGAGGTGTTGC+TGG - chr3_2:82035262-82035281 None:intergenic 35.0%
GAGTTTCTTAAGAGATGTGA+AGG + chr3_2:82035328-82035347 Msa0430300:CDS 35.0%
! GAGTTATCTACCTTCTGTTT+TGG + chr3_2:82035486-82035505 Msa0430300:CDS 35.0%
GAATATCAAATCCAGCTTCT+TGG + chr3_2:82035562-82035581 Msa0430300:CDS 35.0%
AGAAGCTGATGTTGAAACTA+TGG + chr3_2:82035741-82035760 Msa0430300:CDS 35.0%
TGATGTTGAAACTATGGTCA+GGG + chr3_2:82035747-82035766 Msa0430300:CDS 35.0%
AATGCAACAAACGCAAGTTT+GGG + chr3_2:82035786-82035805 Msa0430300:CDS 35.0%
TCAATTCCAAGTAGTCCAAA+AGG + chr3_2:82035809-82035828 Msa0430300:CDS 35.0%
! ATTACACCTTTTGGACTACT+TGG - chr3_2:82035818-82035837 None:intergenic 35.0%
! AAGTAGTCCAAAAGGTGTAA+TGG + chr3_2:82035817-82035836 Msa0430300:CDS 35.0%
! GACATTTCCATTACACCTTT+TGG - chr3_2:82035827-82035846 None:intergenic 35.0%
GTTCTGATCTTCTTAGACAA+AGG - chr3_2:82035920-82035939 None:intergenic 35.0%
CAAATTGGAAAAGCTGTAGA+GGG - chr3_2:82034500-82034519 None:intergenic 35.0%
ACAAATTGGAAAAGCTGTAG+AGG - chr3_2:82034501-82034520 None:intergenic 35.0%
TGTACTGTTCAGAAGAACAT+TGG + chr3_2:82034650-82034669 Msa0430300:five_prime_UTR 35.0%
GTACTGTTCAGAAGAACATT+GGG + chr3_2:82034651-82034670 Msa0430300:five_prime_UTR 35.0%
! TGTTAGAAACCGACATGTTT+TGG + chr3_2:82034758-82034777 Msa0430300:five_prime_UTR 35.0%
! GTTAGAAACCGACATGTTTT+GGG + chr3_2:82034759-82034778 Msa0430300:five_prime_UTR 35.0%
CTCGAAGAGAATCTATTGAA+TGG + chr3_2:82034869-82034888 Msa0430300:five_prime_UTR 35.0%
TTGCTGTCAACTATCTTGAT+AGG + chr3_2:82034941-82034960 Msa0430300:five_prime_UTR 35.0%
! ATGGCTTCTCATTCTGAAAA+CGG - chr3_2:82034981-82035000 None:intergenic 35.0%
TCTTTCTCTTGCTGCTAAAA+TGG + chr3_2:82035029-82035048 Msa0430300:five_prime_UTR 35.0%
ATCTAGCAAAAGAGGAACAT+GGG - chr3_2:82035061-82035080 None:intergenic 35.0%
ACTTGAAGATCTAGCAAAAG+AGG - chr3_2:82035069-82035088 None:intergenic 35.0%
TGATACTTTCAACTCTTGGA+TGG + chr3_2:82035227-82035246 Msa0430300:CDS 35.0%
!! ATAAAAGAAAGAGGTGTTGC+TGG - chr3_2:82035262-82035281 None:intergenic 35.0%
GAGTTTCTTAAGAGATGTGA+AGG + chr3_2:82035328-82035347 Msa0430300:CDS 35.0%
! GAGTTATCTACCTTCTGTTT+TGG + chr3_2:82035486-82035505 Msa0430300:CDS 35.0%
GAATATCAAATCCAGCTTCT+TGG + chr3_2:82035562-82035581 Msa0430300:CDS 35.0%
AGAAGCTGATGTTGAAACTA+TGG + chr3_2:82035741-82035760 Msa0430300:CDS 35.0%
TGATGTTGAAACTATGGTCA+GGG + chr3_2:82035747-82035766 Msa0430300:CDS 35.0%
AATGCAACAAACGCAAGTTT+GGG + chr3_2:82035786-82035805 Msa0430300:CDS 35.0%
TCAATTCCAAGTAGTCCAAA+AGG + chr3_2:82035809-82035828 Msa0430300:CDS 35.0%
! ATTACACCTTTTGGACTACT+TGG - chr3_2:82035818-82035837 None:intergenic 35.0%
! AAGTAGTCCAAAAGGTGTAA+TGG + chr3_2:82035817-82035836 Msa0430300:CDS 35.0%
! GACATTTCCATTACACCTTT+TGG - chr3_2:82035827-82035846 None:intergenic 35.0%
GTTCTGATCTTCTTAGACAA+AGG - chr3_2:82035920-82035939 None:intergenic 35.0%
TTCATCGTCCCAAAACATGT+CGG - chr3_2:82034770-82034789 None:intergenic 40.0%
! TCTTGAAACCAACCCTGTTT+TGG + chr3_2:82034840-82034859 Msa0430300:five_prime_UTR 40.0%
TTCGAGCAGTTTCCAAAACA+GGG - chr3_2:82034855-82034874 None:intergenic 40.0%
! GTTTTCAGAATGAGAAGCCA+TGG + chr3_2:82034980-82034999 Msa0430300:five_prime_UTR 40.0%
GATCTAGCAAAAGAGGAACA+TGG - chr3_2:82035062-82035081 None:intergenic 40.0%
CTTCTCTCTGTCATTAGATC+AGG + chr3_2:82035355-82035374 Msa0430300:CDS 40.0%
!!! TGTTTTGGCAACTGCTACAA+TGG + chr3_2:82035501-82035520 Msa0430300:CDS 40.0%
ATCCAGCTTCTTGGTATTCT+TGG + chr3_2:82035571-82035590 Msa0430300:CDS 40.0%
TTCCAAGAATACCAAGAAGC+TGG - chr3_2:82035576-82035595 None:intergenic 40.0%
GGAATAATGGTTACAGGACA+AGG + chr3_2:82035706-82035725 Msa0430300:intron 40.0%
ATAATGGTTACAGGACAAGG+TGG + chr3_2:82035709-82035728 Msa0430300:intron 40.0%
CTGATGTTGAAACTATGGTC+AGG + chr3_2:82035746-82035765 Msa0430300:CDS 40.0%
CAATGCAACAAACGCAAGTT+TGG + chr3_2:82035785-82035804 Msa0430300:CDS 40.0%
TGCTATAGCCCATGAATCAT+TGG - chr3_2:82035867-82035886 None:intergenic 40.0%
ATCTTCTTAGACAAAGGCTC+TGG - chr3_2:82035914-82035933 None:intergenic 40.0%
ATGACTATCTCTCATGCCTA+TGG + chr3_2:82036087-82036106 Msa0430300:three_prime_UTR 40.0%
!! ATAACTGGTTTGGTGACCAT+AGG - chr3_2:82036106-82036125 None:intergenic 40.0%
ACTATCCATGAATCCTGAGA+TGG + chr3_2:82036138-82036157 Msa0430300:three_prime_UTR 40.0%
CTATCCATGAATCCTGAGAT+GGG + chr3_2:82036139-82036158 Msa0430300:three_prime_UTR 40.0%
! GAGATCGTTGGCATTTTATG+AGG + chr3_2:82036179-82036198 Msa0430300:three_prime_UTR 40.0%
TTCATCGTCCCAAAACATGT+CGG - chr3_2:82034770-82034789 None:intergenic 40.0%
! TCTTGAAACCAACCCTGTTT+TGG + chr3_2:82034840-82034859 Msa0430300:five_prime_UTR 40.0%
TTCGAGCAGTTTCCAAAACA+GGG - chr3_2:82034855-82034874 None:intergenic 40.0%
! GTTTTCAGAATGAGAAGCCA+TGG + chr3_2:82034980-82034999 Msa0430300:five_prime_UTR 40.0%
GATCTAGCAAAAGAGGAACA+TGG - chr3_2:82035062-82035081 None:intergenic 40.0%
CTTCTCTCTGTCATTAGATC+AGG + chr3_2:82035355-82035374 Msa0430300:CDS 40.0%
!!! TGTTTTGGCAACTGCTACAA+TGG + chr3_2:82035501-82035520 Msa0430300:CDS 40.0%
ATCCAGCTTCTTGGTATTCT+TGG + chr3_2:82035571-82035590 Msa0430300:CDS 40.0%
TTCCAAGAATACCAAGAAGC+TGG - chr3_2:82035576-82035595 None:intergenic 40.0%
GGAATAATGGTTACAGGACA+AGG + chr3_2:82035706-82035725 Msa0430300:intron 40.0%
ATAATGGTTACAGGACAAGG+TGG + chr3_2:82035709-82035728 Msa0430300:intron 40.0%
CTGATGTTGAAACTATGGTC+AGG + chr3_2:82035746-82035765 Msa0430300:CDS 40.0%
CAATGCAACAAACGCAAGTT+TGG + chr3_2:82035785-82035804 Msa0430300:CDS 40.0%
TGCTATAGCCCATGAATCAT+TGG - chr3_2:82035867-82035886 None:intergenic 40.0%
ATCTTCTTAGACAAAGGCTC+TGG - chr3_2:82035914-82035933 None:intergenic 40.0%
ATGACTATCTCTCATGCCTA+TGG + chr3_2:82036087-82036106 Msa0430300:three_prime_UTR 40.0%
!! ATAACTGGTTTGGTGACCAT+AGG - chr3_2:82036106-82036125 None:intergenic 40.0%
ACTATCCATGAATCCTGAGA+TGG + chr3_2:82036138-82036157 Msa0430300:three_prime_UTR 40.0%
CTATCCATGAATCCTGAGAT+GGG + chr3_2:82036139-82036158 Msa0430300:three_prime_UTR 40.0%
! GAGATCGTTGGCATTTTATG+AGG + chr3_2:82036179-82036198 Msa0430300:three_prime_UTR 40.0%
CTGTTCAGAAGAACATTGGG+AGG + chr3_2:82034654-82034673 Msa0430300:five_prime_UTR 45.0%
AGCAGTTTCCAAAACAGGGT+TGG - chr3_2:82034851-82034870 None:intergenic 45.0%
CTTCGAGCAGTTTCCAAAAC+AGG - chr3_2:82034856-82034875 None:intergenic 45.0%
GTAGCAGTTGCCAAAACAGA+AGG - chr3_2:82035499-82035518 None:intergenic 45.0%
! GGTTCATGTTTTCAACAGCG+TGG + chr3_2:82035522-82035541 Msa0430300:CDS 45.0%
ACTATGGTCAGGGTATGAAG+AGG + chr3_2:82035757-82035776 Msa0430300:CDS 45.0%
CTATGGTCAGGGTATGAAGA+GGG + chr3_2:82035758-82035777 Msa0430300:CDS 45.0%
TATGGTCAGGGTATGAAGAG+GGG + chr3_2:82035759-82035778 Msa0430300:CDS 45.0%
CTGTTCAGAAGAACATTGGG+AGG + chr3_2:82034654-82034673 Msa0430300:five_prime_UTR 45.0%
AGCAGTTTCCAAAACAGGGT+TGG - chr3_2:82034851-82034870 None:intergenic 45.0%
CTTCGAGCAGTTTCCAAAAC+AGG - chr3_2:82034856-82034875 None:intergenic 45.0%
GTAGCAGTTGCCAAAACAGA+AGG - chr3_2:82035499-82035518 None:intergenic 45.0%
! GGTTCATGTTTTCAACAGCG+TGG + chr3_2:82035522-82035541 Msa0430300:CDS 45.0%
ACTATGGTCAGGGTATGAAG+AGG + chr3_2:82035757-82035776 Msa0430300:CDS 45.0%
CTATGGTCAGGGTATGAAGA+GGG + chr3_2:82035758-82035777 Msa0430300:CDS 45.0%
TATGGTCAGGGTATGAAGAG+GGG + chr3_2:82035759-82035778 Msa0430300:CDS 45.0%
!!! GTTTTTATTTATTTATTTAT+TGG - chr3_2:82034436-82034455 None:intergenic 5.0%
!! TATTAATATTAATATTAATG+TGG + chr3_2:82035685-82035704 Msa0430300:intron 5.0%
!!! GTTTTTATTTATTTATTTAT+TGG - chr3_2:82034436-82034455 None:intergenic 5.0%
!! TATTAATATTAATATTAATG+TGG + chr3_2:82035685-82035704 Msa0430300:intron 5.0%
TGGAAAAGCTGTAGAGGGAG+AGG - chr3_2:82034495-82034514 None:intergenic 50.0%
AACAGCGTGGAGCCTAGTTT+AGG + chr3_2:82035535-82035554 Msa0430300:CDS 50.0%
TAGGCCCATCTCAGGATTCA+TGG - chr3_2:82036146-82036165 None:intergenic 50.0%
GAATCCTGAGATGGGCCTAT+AGG + chr3_2:82036147-82036166 Msa0430300:three_prime_UTR 50.0%
GATCTCTGCTGTGGTCCTAT+AGG - chr3_2:82036165-82036184 None:intergenic 50.0%
AATGCCAACGATCTCTGCTG+TGG - chr3_2:82036174-82036193 None:intergenic 50.0%
TGGAAAAGCTGTAGAGGGAG+AGG - chr3_2:82034495-82034514 None:intergenic 50.0%
AACAGCGTGGAGCCTAGTTT+AGG + chr3_2:82035535-82035554 Msa0430300:CDS 50.0%
TAGGCCCATCTCAGGATTCA+TGG - chr3_2:82036146-82036165 None:intergenic 50.0%
GAATCCTGAGATGGGCCTAT+AGG + chr3_2:82036147-82036166 Msa0430300:three_prime_UTR 50.0%
GATCTCTGCTGTGGTCCTAT+AGG - chr3_2:82036165-82036184 None:intergenic 50.0%
AATGCCAACGATCTCTGCTG+TGG - chr3_2:82036174-82036193 None:intergenic 50.0%
AGCTGTAGAGGGAGAGGAGA+AGG - chr3_2:82034489-82034508 None:intergenic 55.0%
GCTGCAAGCTGAGTCATCCA+TGG - chr3_2:82035000-82035019 None:intergenic 55.0%
TGGTCCTATAGGCCCATCTC+AGG - chr3_2:82036154-82036173 None:intergenic 55.0%
AGGACCACAGCAGAGATCGT+TGG + chr3_2:82036167-82036186 Msa0430300:three_prime_UTR 55.0%
AGCTGTAGAGGGAGAGGAGA+AGG - chr3_2:82034489-82034508 None:intergenic 55.0%
GCTGCAAGCTGAGTCATCCA+TGG - chr3_2:82035000-82035019 None:intergenic 55.0%
TGGTCCTATAGGCCCATCTC+AGG - chr3_2:82036154-82036173 None:intergenic 55.0%
AGGACCACAGCAGAGATCGT+TGG + chr3_2:82036167-82036186 Msa0430300:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 82034430 82036346 82034430 ID=Msa0430300;Name=Msa0430300
chr3_2 mRNA 82034430 82036346 82034430 ID=Msa0430300-mRNA-1;Parent=Msa0430300;Name=Msa0430300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=759|1|1|1|0.66|0.5|4|376|179
chr3_2 exon 82034430 82035171 82034430 ID=Msa0430300-mRNA-1:exon:22733;Parent=Msa0430300-mRNA-1
chr3_2 exon 82035200 82035376 82035200 ID=Msa0430300-mRNA-1:exon:22734;Parent=Msa0430300-mRNA-1
chr3_2 exon 82035473 82035603 82035473 ID=Msa0430300-mRNA-1:exon:22735;Parent=Msa0430300-mRNA-1
chr3_2 exon 82035722 82036346 82035722 ID=Msa0430300-mRNA-1:exon:22736;Parent=Msa0430300-mRNA-1
chr3_2 five_prime_UTR 82034430 82035171 82034430 ID=Msa0430300-mRNA-1:five_prime_utr;Parent=Msa0430300-mRNA-1
chr3_2 five_prime_UTR 82035200 82035216 82035200 ID=Msa0430300-mRNA-1:five_prime_utr;Parent=Msa0430300-mRNA-1
chr3_2 CDS 82035217 82035376 82035217 ID=Msa0430300-mRNA-1:cds;Parent=Msa0430300-mRNA-1
chr3_2 CDS 82035473 82035603 82035473 ID=Msa0430300-mRNA-1:cds;Parent=Msa0430300-mRNA-1
chr3_2 CDS 82035722 82035970 82035722 ID=Msa0430300-mRNA-1:cds;Parent=Msa0430300-mRNA-1
chr3_2 three_prime_UTR 82035971 82036346 82035971 ID=Msa0430300-mRNA-1:three_prime_utr;Parent=Msa0430300-mRNA-1
Gene Sequence

>Msa0430300

ATGGAGATTTTGATACTTTCAACTCTTGGATGGAAGATGAGTCCAGCAACACCTCTTTCTTTTATTGATTTTGTCATAAGAAGACTTGGATTGAAAGATCATCTTTGTTGGGAGTTTCTTAAGAGATGTGAAGGTGTTCTTCTCTCTGTCATTAGATCAGATTCTAAGTTTATGAGTTATCTACCTTCTGTTTTGGCAACTGCTACAATGGTTCATGTTTTCAACAGCGTGGAGCCTAGTTTAGGAGATGAATATCAAATCCAGCTTCTTGGTATTCTTGGAATCAACAAAGACAAGGTGGATGAATGTGAGAAGCTGATGTTGAAACTATGGTCAGGGTATGAAGAGGGGAATCAATGCAACAAACGCAAGTTTGGGTCAATTCCAAGTAGTCCAAAAGGTGTAATGGAAATGTCGTTTAGCTGTGATAATTCCAATGATTCATGGGCTATAGCAGCAACAGCTTCTGTATCATCTTCACCAGAGCCTTTGTCTAAGAAGATCAGAACTCAAGACCAGTTTCTATTAAACTCTTCATAG

Protein sequence

>Msa0430300

MEILILSTLGWKMSPATPLSFIDFVIRRLGLKDHLCWEFLKRCEGVLLSVIRSDSKFMSYLPSVLATATMVHVFNSVEPSLGDEYQIQLLGILGINKDKVDECEKLMLKLWSGYEEGNQCNKRKFGSIPSSPKGVMEMSFSCDNSNDSWAIAATASVSSSPEPLSKKIRTQDQFLLNSS*