AlfalfaGEDB | Msa0573260

M. sativa cultivar zhongmu-4 / Msa0573260

KEGG: K01961
GO: -
PFAM: PF00289.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573260	XP_003630608.2	97.619	546	7	3	1	544	1	542	0.0	1092

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573260	sp\|B9HBA8\|ACCC1_POPTR	86.148	527	61	4	1	526	1	516	0.0	927

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573260	G7LIV6	97.619	546	7	3	1	544	1	542	0.0	1092

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0374240	Msa0573260	0.857788	1.285223e-62	-8.615850e-47
Msa0469800	Msa0573260	0.881620	2.063351e-70	-8.615850e-47
Msa0469810	Msa0573260	0.844614	6.776839e-59	-8.615850e-47
Msa0515360	Msa0573260	0.843091	1.734459e-58	-8.615850e-47
Msa0518590	Msa0573260	0.802281	6.043708e-49	-8.615850e-47
Msa0573260	Msa0615640	0.815443	9.221100e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573260	MtrunA17_Chr8g0389041	97.619	546	7	3	1	544	1	542	0.0	1092
Msa0573260	MtrunA17_Chr1g0185251	47.228	451	237	1	74	523	44	494	1.07e-136	414
Msa0573260	MtrunA17_Chr3g0115531	29.457	516	294	8	65	514	29	540	2.71e-63	225
Msa0573260	MtrunA17_Chr3g0115521	32.047	337	192	5	65	368	7	339	3.55e-50	176

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573260	AT5G35360.1	82.593	540	81	5	1	535	1	532	0.0	889
Msa0573260	AT5G35360.3	81.952	543	87	4	1	538	1	537	0.0	888
Msa0573260	AT5G35360.2	82.400	500	76	5	1	495	1	493	0.0	820
Msa0573260	AT1G03090.2	47.661	449	233	2	75	521	38	486	2.30e-142	428
Msa0573260	AT1G03090.1	46.102	449	220	3	75	521	38	466	1.05e-132	403
Msa0573260	AT1G36160.2	29.903	515	291	8	66	514	28	538	1.29e-64	229
Msa0573260	AT1G36160.1	29.903	515	291	8	66	514	28	538	1.29e-64	229
Msa0573260	AT1G36180.1	29.515	515	293	8	66	514	130	640	3.60e-63	225
Msa0573260	AT1G36180.3	30.375	293	162	5	66	326	130	412	2.87e-34	135
Msa0573260	AT1G36180.2	30.576	278	157	4	66	311	130	403	3.40e-34	134

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Find 177 sgRNAs with CRISPR-Local

Find 564 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAAATGTGTTGGAA+TGG	0.545674	4_1:+76367430	None:intergenic
AAAATGTGTTGGAATGGAAT+GGG	0.469123	4_1:+76367436	None:intergenic
AAACTTCACCTTATTGGTTC+CGG	0.366780	4_1:+76367045	None:intergenic
AAATAAGGGCTAAGTTGCTG+AGG	0.635491	4_1:-76367628	Msa0573260:five_prime_UTR
AAATATTAGTGCTAGGTTAT+GGG	0.365082	4_1:-76359269	Msa0573260:three_prime_UTR
AAATGTGTTGGAATGGAATG+GGG	0.607231	4_1:+76367437	None:intergenic
AACAGCAATCTCGCCTCGAT+TGG	0.496053	4_1:+76366931	None:intergenic
AAGAACCCCTTTCATCCAAA+AGG	0.501303	4_1:+76363003	None:intergenic
AAGAGCATCTTTATCAATGG+TGG	0.559896	4_1:+76366856	None:intergenic
AAGCAATTGAACGCATGAAA+AGG	0.450014	4_1:-76360580	Msa0573260:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAACGGCTGAGATTAAA+AGG	-	chr4_1:76359100-76359119	Msa0573260:three_prime_UTR	30.0%
GCTGAGATTAAAAGGAAATA+AGG	-	chr4_1:76359108-76359127	Msa0573260:three_prime_UTR	30.0%
AAAATGTGTTGGAATGGAAT+GGG	+	chr4_1:76359318-76359337	None:intergenic	30.0%
TTATACCTACCAATACCAAT+AGG	+	chr4_1:76359347-76359366	None:intergenic	30.0%
AGATGCTCTTCATGTTAAAT+TGG	-	chr4_1:76359908-76359927	Msa0573260:intron	30.0%
CTTCTATTCTATGAAAAGTG+TGG	+	chr4_1:76360029-76360048	None:intergenic	30.0%
TTTAGTGATTCCAAATGTTC+TGG	-	chr4_1:76360162-76360181	Msa0573260:intron	30.0%
TGTACAATACTGCATTTGTT+TGG	-	chr4_1:76360325-76360344	Msa0573260:intron	30.0%
TCTTGTGACTACTTTAGTTA+AGG	-	chr4_1:76360354-76360373	Msa0573260:intron	30.0%
CTTGTGACTACTTTAGTTAA+GGG	-	chr4_1:76360355-76360374	Msa0573260:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	76359077	76367696	76359077	ID=Msa0573260;Name=Msa0573260
chr4_1	mRNA	76359077	76367696	76359077	ID=Msa0573260-mRNA-1;Parent=Msa0573260;Name=Msa0573260-mRNA-1;_AED=0.04;_eAED=0.04;_QI=309\|0.94\|0.88\|1\|0.82\|0.72\|18\|396\|544
chr4_1	exon	76359077	76359538	76359077	ID=Msa0573260-mRNA-1:exon:26649;Parent=Msa0573260-mRNA-1
chr4_1	exon	76359948	76360010	76359948	ID=Msa0573260-mRNA-1:exon:26648;Parent=Msa0573260-mRNA-1
chr4_1	exon	76360124	76360170	76360124	ID=Msa0573260-mRNA-1:exon:26647;Parent=Msa0573260-mRNA-1
chr4_1	exon	76360555	76360630	76360555	ID=Msa0573260-mRNA-1:exon:26646;Parent=Msa0573260-mRNA-1
chr4_1	exon	76361717	76361823	76361717	ID=Msa0573260-mRNA-1:exon:26645;Parent=Msa0573260-mRNA-1
chr4_1	exon	76362126	76362207	76362126	ID=Msa0573260-mRNA-1:exon:26644;Parent=Msa0573260-mRNA-1
chr4_1	exon	76362274	76362366	76362274	ID=Msa0573260-mRNA-1:exon:26643;Parent=Msa0573260-mRNA-1
chr4_1	exon	76362971	76363156	76362971	ID=Msa0573260-mRNA-1:exon:26642;Parent=Msa0573260-mRNA-1
chr4_1	exon	76363713	76363772	76363713	ID=Msa0573260-mRNA-1:exon:26641;Parent=Msa0573260-mRNA-1
chr4_1	exon	76364467	76364556	76364467	ID=Msa0573260-mRNA-1:exon:26640;Parent=Msa0573260-mRNA-1
chr4_1	exon	76365030	76365101	76365030	ID=Msa0573260-mRNA-1:exon:26639;Parent=Msa0573260-mRNA-1
chr4_1	exon	76365703	76365759	76365703	ID=Msa0573260-mRNA-1:exon:26638;Parent=Msa0573260-mRNA-1
chr4_1	exon	76365873	76365971	76365873	ID=Msa0573260-mRNA-1:exon:26637;Parent=Msa0573260-mRNA-1
chr4_1	exon	76366473	76366614	76366473	ID=Msa0573260-mRNA-1:exon:26636;Parent=Msa0573260-mRNA-1
chr4_1	exon	76366800	76367047	76366800	ID=Msa0573260-mRNA-1:exon:26635;Parent=Msa0573260-mRNA-1
chr4_1	exon	76367054	76367140	76367054	ID=Msa0573260-mRNA-1:exon:26634;Parent=Msa0573260-mRNA-1
chr4_1	exon	76367245	76367340	76367245	ID=Msa0573260-mRNA-1:exon:26633;Parent=Msa0573260-mRNA-1
chr4_1	exon	76367424	76367696	76367424	ID=Msa0573260-mRNA-1:exon:26632;Parent=Msa0573260-mRNA-1
chr4_1	five_prime_UTR	76367424	76367696	76367424	ID=Msa0573260-mRNA-1:five_prime_utr;Parent=Msa0573260-mRNA-1
chr4_1	five_prime_UTR	76367305	76367340	76367305	ID=Msa0573260-mRNA-1:five_prime_utr;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76367245	76367304	76367245	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76367054	76367140	76367054	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76366800	76367047	76366800	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76366473	76366614	76366473	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76365873	76365971	76365873	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76365703	76365759	76365703	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76365030	76365101	76365030	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76364467	76364556	76364467	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76363713	76363772	76363713	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76362971	76363156	76362971	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76362274	76362366	76362274	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76362126	76362207	76362126	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76361717	76361823	76361717	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76360555	76360630	76360555	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76360124	76360170	76360124	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76359948	76360010	76359948	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	CDS	76359473	76359538	76359473	ID=Msa0573260-mRNA-1:cds;Parent=Msa0573260-mRNA-1
chr4_1	three_prime_UTR	76359077	76359472	76359077	ID=Msa0573260-mRNA-1:three_prime_utr;Parent=Msa0573260-mRNA-1

Gene Sequence

>Msa0573260

ATGGAGGCAACAATGTCCGCAGCATGCAAATCTCTCACCTCACCATCCACCGTCGTCACAGGTTTATTTGCGGCGAGAGGAGGAGGAGGAGGAGGATTCAACAAGAATTCACATTTTCACTGCACTTTCTTGACCGGAACCAATAAGTTTCCGAGGCAAACTACTCAACCTTGTAAACAACGCCAAGCGCGTCATTGCGGTGCTCTTCGTGCTACTTGTCGTCTTGACAAGATTTTGGTTGCCAATCGAGGCGAGATTGCTGTTCGTGTTATTCGTACTGCTCATGAATTGGGGATTCCTTGTGTTGCTGTTTATTCCACCATTGATAAAGATGCTCTTCATGTTAAATTGGCTGATGAATCTGTTTGTATTGGTGAAGCTCCCAGTAGCCAATCGTATTTAGTGATTCCAAATGTTCTGGCTGCTGCTACCAGCCGCCAATGTACAATGTTGCATCCTGGATATGGTTTTCTTGCTGAGAATGCTGTGTTTGTTGAAATGTGTAGAGATCATGGAGTCAATTTTATTGGACCTAACCCTGACAGTATTCGGGTTATGGGTGACAAAGCAACTGCAAGAGAAACAATGAAGAAAGCAAATGTTCCTACTGTTCCAGGAAGTGAGGGGCTTTTGCAGACCACTGAAGAAGCTATCAGACTGGCACACGAGATTGGTTTCCCTGTGATGATCAAGGCAACCGCAGGTGGTGGAGGACGTGGCATGCGTCTTGCTAAAGAACCTAAAGAGTTTGTGAAATTATTACAGCAAGCTAAGAGTGAGGCAGCTGCTGCATTTGGAAATGATGGGGTTTATTTGGAGAAGTACATTCAAAACCCAAGGCACATTGAATTCCAGGTTCTTGCAGATAAATATGGTAATGTTGTTCACTTTGGAGAACGTGATTGCAGTATCCAGAGGCGTAATCAGAAACTGCTCGAAGAAGCACCGTCTCCTGCATTGACCCCAGAGTTACGGAAGGCAATGGGAGATGCAGCAGTTCAGGCTGCCGCATCTATCGGTTACATAGGTGTTGGAACGGTTGAGTTCCTTTTGGATGAAAGGGGTTCTTTTTACTTCATGGAGATGAACACTCGTATCCAGGTTGAACATCCCGTGACAGAAATGATTTCCTCAGTTGATTTGATAGAAGAGCAAATTCGTGTAGCTATGGGAGAAAAGCTTCGATACAAACAGGAGGATATTGTACTCAGAGGACATTCCATTGAATGCCGTATCAATGCAGAAGATGCTTTTAAGGGATTTAGACCAGGGCCAGGTAGAATTACAGCATACTTGCCGTCTGGTGGTCCATTTGTCAGGATGGATAGCCATATTTATCCCGATTATGTTGTTCCTCCAAGCTATGACTCTCTTCTTGGAAAGCTGATTGTATGGGCTCCGACTAGAGAAAAAGCAATTGAACGCATGAAAAGGGCACTCGATGACACTATTATCACAGGAGTTCCTACAACAATTGATTATCATAAACTTATCCTTGACATAGAGGATTTCAAAAATGGCAAGGTTGATACTGCTTTTATTCCAAAGCACGAGGAGGAGTTGGCTGTGCCCCCACAACAGAAGATGGTATTAGTTAACAAGGTGGTGACAGAACCAGCTGGCTCGACTGCCTGA

Protein sequence

>Msa0573260

MEATMSAACKSLTSPSTVVTGLFAARGGGGGGFNKNSHFHCTFLTGTNKFPRQTTQPCKQRQARHCGALRATCRLDKILVANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLVIPNVLAAATSRQCTMLHPGYGFLAENAVFVEMCRDHGVNFIGPNPDSIRVMGDKATARETMKKANVPTVPGSEGLLQTTEEAIRLAHEIGFPVMIKATAGGGGRGMRLAKEPKEFVKLLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVQAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIRVAMGEKLRYKQEDIVLRGHSIECRINAEDAFKGFRPGPGRITAYLPSGGPFVRMDSHIYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDFKNGKVDTAFIPKHEEELAVPPQQKMVLVNKVVTEPAGSTA*