AlfalfaGEDB | Msa0374240

M. sativa cultivar zhongmu-4 / Msa0374240

KEGG: K01897
GO: GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704
PFAM: PF00501.31

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374240	AES72276.2	97.695	694	16	0	1	694	1	694	0.0	1395

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374240	sp\|Q9CAP8\|LACS9_ARATH	72.767	694	185	2	1	693	1	691	0.0	1085

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374240	G7J4F3	97.695	694	16	0	1	694	1	694	0.0	1395

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0228540	Msa0374240	0.842806	2.064962e-58	-8.615850e-47
Msa0374240	Msa0469800	0.949637	8.502368e-108	-8.615850e-47
Msa0374240	Msa0469810	0.948274	1.305417e-106	-8.615850e-47
Msa0374240	Msa0475840	0.851688	7.542273e-61	-8.615850e-47
Msa0374240	Msa0515360	0.959973	4.908931e-118	-8.615850e-47
Msa0374240	Msa0518590	0.822374	2.451522e-53	-8.615850e-47
Msa0374240	Msa0552710	0.820302	7.369959e-53	-8.615850e-47
Msa0374240	Msa0573260	0.857788	1.285223e-62	-8.615850e-47
Msa0374240	Msa0615640	0.871996	4.461969e-67	-8.615850e-47
Msa0374240	Msa0687460	0.811277	7.588857e-51	-8.615850e-47

Showing 1 to 10 of 13 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374240	MtrunA17_Chr3g0124631	93.983	698	38	1	1	694	1	698	0.0	1335
Msa0374240	MtrunA17_Chr1g0160041	76.259	695	163	2	1	693	1	695	0.0	1112
Msa0374240	MtrunA17_Chr3g0120731	61.295	695	265	2	3	693	33	727	0.0	897
Msa0374240	MtrunA17_Chr1g0205711	35.194	645	374	11	56	694	80	686	2.85e-119	372
Msa0374240	MtrunA17_Chr5g0396691	32.099	648	395	14	55	692	42	654	3.21e-102	327
Msa0374240	MtrunA17_Chr5g0396711	31.944	648	396	14	55	692	42	654	1.76e-99	319
Msa0374240	MtrunA17_Chr1g0194371	31.798	673	401	14	37	692	22	653	1.28e-97	315
Msa0374240	MtrunA17_Chr4g0034181	31.062	631	382	16	78	692	58	651	7.34e-93	302
Msa0374240	MtrunA17_Chr8g0388081	31.509	603	380	11	101	692	13	593	2.97e-91	296
Msa0374240	MtrunA17_Chr7g0270221	31.988	644	346	16	56	685	41	606	1.51e-90	295

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374240	AT1G77590.1	72.767	694	185	2	1	693	1	691	0.0	1085
Msa0374240	AT2G04350.2	64.042	673	239	1	24	693	48	720	0.0	906
Msa0374240	AT2G04350.1	64.042	673	239	1	24	693	48	720	0.0	906
Msa0374240	AT1G77590.2	75.503	547	131	1	147	693	2	545	0.0	885
Msa0374240	AT5G27600.1	36.318	603	350	12	100	694	113	689	2.96e-121	378
Msa0374240	AT3G05970.1	35.257	641	375	10	56	692	83	687	8.10e-117	366
Msa0374240	AT4G23850.1	32.569	654	386	17	54	692	42	655	1.15e-100	323
Msa0374240	AT1G64400.1	32.198	646	389	14	61	694	49	657	1.24e-98	318
Msa0374240	AT2G47240.1	31.183	651	399	12	56	694	41	654	5.38e-94	305
Msa0374240	AT2G47240.2	31.183	651	399	12	56	694	41	654	5.38e-94	305

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Find 194 sgRNAs with CRISPR-Local

Find 668 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACAACATTAGATGGA+TGG	0.524033	3_1:+73615750	Msa0374240:five_prime_UTR
AAAACCTTCCACATATGTTA+AGG	0.446570	3_1:+73620786	Msa0374240:CDS
AAAATACATAACCGTCCCAG+AGG	0.700873	3_1:-73625702	None:intergenic
AAAGAAGTAGCTCCTTTCAC+TGG	0.428483	3_1:-73625671	None:intergenic
AAAGACAAGAGAGTCTTGCA+AGG	0.633949	3_1:+73622040	Msa0374240:CDS
AAAGCAATGTAGAAAGAGTG+GGG	0.704149	3_1:-73615856	None:intergenic
AAATACCCAAGAGTGACACT+TGG	0.612420	3_1:-73622005	None:intergenic
AAATCACTTGTAAATATTGC+TGG	0.347751	3_1:+73617959	Msa0374240:CDS
AACATAATGTTGTCCACAAA+GGG	0.431416	3_1:-73624655	None:intergenic
AACGATGAGGCCGGCAATGT+AGG	0.531894	3_1:-73615977	None:intergenic

Showing 1 to 10 of 194 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAACACAACATTAGATGGA+TGG	+	chr3_1:73615750-73615769	Msa0374240:five_prime_UTR	30.0%
GATGAAGAAAGGTTTATGAA+TGG	-	chr3_1:73615896-73615915	None:intergenic	30.0%
TACTCTAAACGTATCTGTAT+TGG	+	chr3_1:73616691-73616710	Msa0374240:intron	30.0%
GATACATATCAGATACTTCA+AGG	+	chr3_1:73616799-73616818	Msa0374240:intron	30.0%
CATATCTAGCATACATATCT+TGG	+	chr3_1:73616835-73616854	Msa0374240:intron	30.0%
GGATATATGTGAGAAATTAG+TGG	+	chr3_1:73616856-73616875	Msa0374240:intron	30.0%
ATATACATATCCTACTGGTA+TGG	+	chr3_1:73617246-73617265	Msa0374240:intron	30.0%
TCATATTATGCCATCTAATG+AGG	-	chr3_1:73617355-73617374	None:intergenic	30.0%
GATGGCATAATATGAATGAT+CGG	+	chr3_1:73617360-73617379	Msa0374240:intron	30.0%
ATGGAAAAGAAATAAAGCCT+CGG	-	chr3_1:73617471-73617490	None:intergenic	30.0%

Showing 1 to 10 of 668 entries

Previous1 2 3 4 5…67Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	73615739	73625848	73615739	ID=Msa0374240;Name=Msa0374240
chr3_1	mRNA	73615739	73625848	73615739	ID=Msa0374240-mRNA-1;Parent=Msa0374240;Name=Msa0374240-mRNA-1;_AED=0.06;_eAED=0.06;_QI=231\|1\|1\|1\|1\|1\|11\|208\|694
chr3_1	exon	73615739	73616413	73615739	ID=Msa0374240-mRNA-1:exon:16760;Parent=Msa0374240-mRNA-1
chr3_1	exon	73616525	73616605	73616525	ID=Msa0374240-mRNA-1:exon:16761;Parent=Msa0374240-mRNA-1
chr3_1	exon	73617920	73618183	73617920	ID=Msa0374240-mRNA-1:exon:16762;Parent=Msa0374240-mRNA-1
chr3_1	exon	73618371	73618502	73618371	ID=Msa0374240-mRNA-1:exon:16763;Parent=Msa0374240-mRNA-1
chr3_1	exon	73618610	73618783	73618610	ID=Msa0374240-mRNA-1:exon:16764;Parent=Msa0374240-mRNA-1
chr3_1	exon	73618873	73619102	73618873	ID=Msa0374240-mRNA-1:exon:16765;Parent=Msa0374240-mRNA-1
chr3_1	exon	73620690	73620807	73620690	ID=Msa0374240-mRNA-1:exon:16766;Parent=Msa0374240-mRNA-1
chr3_1	exon	73621930	73622061	73621930	ID=Msa0374240-mRNA-1:exon:16767;Parent=Msa0374240-mRNA-1
chr3_1	exon	73624427	73624561	73624427	ID=Msa0374240-mRNA-1:exon:16768;Parent=Msa0374240-mRNA-1
chr3_1	exon	73624631	73624837	73624631	ID=Msa0374240-mRNA-1:exon:16769;Parent=Msa0374240-mRNA-1
chr3_1	exon	73625473	73625848	73625473	ID=Msa0374240-mRNA-1:exon:16770;Parent=Msa0374240-mRNA-1
chr3_1	five_prime_UTR	73615739	73615969	73615739	ID=Msa0374240-mRNA-1:five_prime_utr;Parent=Msa0374240-mRNA-1
chr3_1	CDS	73615970	73616413	73615970	ID=Msa0374240-mRNA-1:cds;Parent=Msa0374240-mRNA-1
chr3_1	CDS	73616525	73616605	73616525	ID=Msa0374240-mRNA-1:cds;Parent=Msa0374240-mRNA-1
chr3_1	CDS	73617920	73618183	73617920	ID=Msa0374240-mRNA-1:cds;Parent=Msa0374240-mRNA-1
chr3_1	CDS	73618371	73618502	73618371	ID=Msa0374240-mRNA-1:cds;Parent=Msa0374240-mRNA-1
chr3_1	CDS	73618610	73618783	73618610	ID=Msa0374240-mRNA-1:cds;Parent=Msa0374240-mRNA-1
chr3_1	CDS	73618873	73619102	73618873	ID=Msa0374240-mRNA-1:cds;Parent=Msa0374240-mRNA-1
chr3_1	CDS	73620690	73620807	73620690	ID=Msa0374240-mRNA-1:cds;Parent=Msa0374240-mRNA-1
chr3_1	CDS	73621930	73622061	73621930	ID=Msa0374240-mRNA-1:cds;Parent=Msa0374240-mRNA-1
chr3_1	CDS	73624427	73624561	73624427	ID=Msa0374240-mRNA-1:cds;Parent=Msa0374240-mRNA-1
chr3_1	CDS	73624631	73624837	73624631	ID=Msa0374240-mRNA-1:cds;Parent=Msa0374240-mRNA-1
chr3_1	CDS	73625473	73625640	73625473	ID=Msa0374240-mRNA-1:cds;Parent=Msa0374240-mRNA-1
chr3_1	three_prime_UTR	73625641	73625848	73625641	ID=Msa0374240-mRNA-1:three_prime_utr;Parent=Msa0374240-mRNA-1

Gene Sequence

>Msa0374240

ATGAACGCCTACATTGCCGGCCTCATCGTTCCTCTCGTCATCCTCCTCTTCCGCAACTCCAACAACCGCAAACGCCGCGGCTTACCGGCCGACGTCGGCGGCGAACCTGGTTTCGCGGTCCGCAACCACCGCGTCACATCTCCGTTAACTTCACTCTGGGAAGGCGTGACGACACTCGCGGAGCTTTTCGAGCTAACATGCAACAAGAATCATGATAGATTGTTACTCGGAACTCGTGAATTGATCTCACGTGAAATGGAAACTTCTTCTGATGGAAGAAAGTTCGAGAAGCTTCATCTTGGAGAGTATCAATGGGTTACGTATGGGAAGGTTTTTGTATCTGTTTGCAGTTTTGCTTCTGGTTTGGCGAAGATTGGTCATGTTAGAGAAGAACGTGTTGCGATTTATGCTGACACTAGAGAAGAATGGTTTATTGCATTGCAGGCTTGCTTCCGGAGAAATGTGACTGTTGTTACCATTTATGCTTCGTTGGGAGAAGAAGCTTTGTGCCATTCATTGAATGAGACAGAGGTTACAACTGTGATTTGTGGCCGCAAAGAATTGAAATCACTTGTAAATATTGCTGGACAACTTGACACTGTGAAACGTGTGATATGTATTGAAGATGATGTCCCATCTGATGCCGCATCTGCTCAGCATGGATGGACAATCATTTCCTTTTCTGATGTTGAAAGGCTTGGTAGAGAAAACCCTATCGAGGCTGATTTACCCCTTTCAGCTGATGTTGCAGTTATAATGTACACAAGTGGAAGTACAGGCTTGCCTAAGGGTGTGATGATGACACATGGCAATATCTTAGCAACAGTGTCTGCTGTAGTGAAAATTGTTCCTGAACTTGGGACAAAGGATGTATATCTAGCATACTTACCAATGGCTCATATTCTTGAATTAATAGCTGAGAATTTGTTTGCTGCTGTTGGAGGCTGTATAGGATACGGAACTCCATTAACTCTAACCGATACATCAAACAAGGTAAAAAAGGGGACAAAAGGGGATGCCACTGCATTGATGCCAACTGTGTTGGTAGCTGTACCAGCAATTCTTGATCGTGTTCGTGATGGAGTTTTCAAGAAGGTAAATGCAAAGGGAGGATTATCAAAGGCATTGTTTGATTTAGCCTATGCACGAAGGATGCAAGCGATTAATGGTAGCTGGTTTGGTGCTTGGGGATTGGAAAAAGCTCTATGGAATTTTCTTGTCTTCAAAAAGGTCCAAGCAATTCTGGGTGGTCGTATTCGTTTTATACTATGTGGTGGTGCACCCCTTTCTGGTGACTCACAAAGATTCATCAACATTTGTCTTGGTGCTCCAATAGGTCAAGCATATGGTCTCACGGAGACTTGTGCTGGTGGGACATTTTCTGATTTTGACGATACTTCTGTTGGCCGTGTAGGACCGCCAAAACCTTCCACATATGTTAAGTTAATCGACTGGCCTGAAGGTGGATATTCAACTACTGACTCACCGATGCCTCGTGGTGAAATAGTAATTGGTGGTCCAAGTGTCACTCTTGGGTATTTCAAAAATGAAGAAAAGACAAGAGAGTCTTGCAAGGTTGATGAACGGGGAATGAGGTGGTTCTACACTGGTGACGTAGGTAGATTTCATGCGGATGGTTGCCTTGAGATCATTGATAGGAAAAAGGACATAGTTAAACTGCAGCATGGAGAATATGTGTCCCTGGGAAAGGTTGAGGCAGTTCTTCTTGGCAGCCCCTTTGTGGACAACATTATGTTGCATGCGGATTCTTTTCAAAGTTACTGTGTGGCACTTGTGGCTGTTTCTCATCCTGCATTGGATGAATGGGCTTCAAAGCAAGGAATTGCTTATTCTGATCTTTCAGAACTGTGCAGCAAAGAAGAAACAGTGAAGGAGGTGCATGCATCACTTGTAAAGGAAGCAAAGAAGGCTCGTCTGGAAAAATTTGAAATTCCTGCAAAACTTAAATTGCTTTCTGACCCATGGACTCCTGAGACTGGCCTAGTTACTGCAGCTCTTAAGATCAAGAGAGATGTCATTAGAAAGACTTTTCAAGAAGAGCTCTCAAAGTTATATGCCAAATAG

Protein sequence

>Msa0374240

MNAYIAGLIVPLVILLFRNSNNRKRRGLPADVGGEPGFAVRNHRVTSPLTSLWEGVTTLAELFELTCNKNHDRLLLGTRELISREMETSSDGRKFEKLHLGEYQWVTYGKVFVSVCSFASGLAKIGHVREERVAIYADTREEWFIALQACFRRNVTVVTIYASLGEEALCHSLNETEVTTVICGRKELKSLVNIAGQLDTVKRVICIEDDVPSDAASAQHGWTIISFSDVERLGRENPIEADLPLSADVAVIMYTSGSTGLPKGVMMTHGNILATVSAVVKIVPELGTKDVYLAYLPMAHILELIAENLFAAVGGCIGYGTPLTLTDTSNKVKKGTKGDATALMPTVLVAVPAILDRVRDGVFKKVNAKGGLSKALFDLAYARRMQAINGSWFGAWGLEKALWNFLVFKKVQAILGGRIRFILCGGAPLSGDSQRFINICLGAPIGQAYGLTETCAGGTFSDFDDTSVGRVGPPKPSTYVKLIDWPEGGYSTTDSPMPRGEIVIGGPSVTLGYFKNEEKTRESCKVDERGMRWFYTGDVGRFHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAVLLGSPFVDNIMLHADSFQSYCVALVAVSHPALDEWASKQGIAYSDLSELCSKEETVKEVHASLVKEAKKARLEKFEIPAKLKLLSDPWTPETGLVTAALKIKRDVIRKTFQEELSKLYAK*