AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577680 MtrunA17_Chr8g0377481 98.247 970 17 0 1 970 1 970 0.0 1984
Msa0577680 MtrunA17_Chr3g0122391 80.306 980 182 5 1 970 49 1027 0.0 1612
Msa0577680 MtrunA17_Chr5g0447641 53.683 991 397 14 18 967 243 1212 0.0 1035
Msa0577680 MtrunA17_Chr8g0392301 52.563 995 395 18 21 967 29 994 0.0 976
Msa0577680 MtrunA17_Chr2g0311191 44.118 306 71 4 203 508 29 234 5.85e-65 218
Msa0577680 MtrunA17_Chr3g0136601 36.957 276 163 4 395 661 373 646 3.98e-40 160
Msa0577680 MtrunA17_Chr5g0405701 33.750 320 188 6 345 657 462 764 2.14e-38 155
Msa0577680 MtrunA17_Chr5g0405701 34.722 144 62 2 838 955 1047 1184 7.66e-18 89.4
Msa0577680 MtrunA17_Chr1g0150511 33.882 304 163 6 395 661 379 681 3.56e-38 154
Msa0577680 MtrunA17_Chr1g0150511 33.333 129 67 3 843 953 870 997 4.20e-12 70.5
Msa0577680 MtrunA17_Chr8g0371601 34.603 315 192 5 345 657 424 726 7.45e-37 150
Msa0577680 MtrunA17_Chr8g0371601 36.296 135 63 3 838 955 1026 1154 7.33e-18 89.4
Msa0577680 MtrunA17_Chr4g0013831 28.650 363 222 6 383 742 335 663 1.45e-34 142
Msa0577680 MtrunA17_Chr4g0013831 32.624 141 78 5 820 959 600 724 6.36e-12 69.7
Msa0577680 MtrunA17_Chr7g0269631 30.357 280 162 4 383 661 335 582 3.29e-28 121
Msa0577680 MtrunA17_Chr1g0194741 30.605 281 163 8 381 642 384 651 1.73e-25 113
Msa0577680 MtrunA17_Chr1g0197591 26.000 350 208 10 344 666 328 653 2.20e-24 110
Msa0577680 MtrunA17_Chr1g0197591 37.692 130 64 4 841 963 926 1045 2.34e-15 81.3
Msa0577680 MtrunA17_Chr7g0274831 33.562 146 84 4 826 970 628 761 1.63e-17 87.8
Msa0577680 MtrunA17_Chr7g0274831 21.542 441 290 11 371 804 354 745 1.45e-14 78.2
Msa0577680 MtrunA17_Chr1g0190021 33.835 133 78 3 840 970 634 758 8.86e-16 82.4
Msa0577680 MtrunA17_Chr1g0190021 25.595 168 125 0 371 538 350 517 2.61e-12 70.9
Msa0577680 MtrunA17_Chr1g0186431 32.331 133 81 3 837 968 631 755 7.27e-15 79.3
Msa0577680 MtrunA17_Chr1g0186431 26.174 149 110 0 371 519 344 492 5.85e-11 66.6
Msa0577680 MtrunA17_Chr1g0194731 32.609 138 69 6 838 964 325 449 1.34e-13 74.3
Msa0577680 MtrunA17_Chr1g0168161 31.579 133 81 3 837 967 633 757 1.92e-13 74.7
Msa0577680 MtrunA17_Chr8g0343551 41.463 82 36 3 882 963 13 82 1.47e-12 64.3
Msa0577680 MtrunA17_Chr8g0364781 32.759 116 70 3 844 959 15 122 4.95e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577680 AT1G27320.1 68.432 982 285 7 1 969 61 1030 0.0 1348
Msa0577680 AT5G35750.1 56.830 959 374 10 34 967 230 1173 0.0 1066
Msa0577680 AT2G01830.5 53.086 972 397 14 31 967 113 1060 0.0 990
Msa0577680 AT2G01830.2 53.086 972 397 14 31 967 124 1071 0.0 989
Msa0577680 AT2G01830.1 53.086 972 397 14 31 967 101 1048 0.0 988
Msa0577680 AT2G01830.4 53.086 972 397 14 31 967 101 1048 0.0 988
Msa0577680 AT2G01830.6 53.086 972 397 14 31 967 101 1048 0.0 988
Msa0577680 AT2G01830.3 53.086 972 397 14 31 967 101 1048 0.0 988
Msa0577680 AT5G10720.1 35.252 278 145 3 395 668 369 615 6.41e-42 166
Msa0577680 AT5G10720.1 32.414 145 78 3 842 968 779 921 9.87e-14 76.3
Msa0577680 AT1G66340.1 29.108 426 255 8 383 804 334 716 2.20e-38 154
Msa0577680 AT1G66340.1 29.167 120 78 2 840 959 609 721 3.94e-11 67.8
Msa0577680 AT2G17820.1 30.233 387 244 8 345 728 451 814 1.24e-36 150
Msa0577680 AT2G17820.1 33.333 150 62 3 838 955 1041 1184 3.51e-15 81.3
Msa0577680 AT2G40940.1 32.143 280 157 4 383 661 334 581 9.75e-31 129
Msa0577680 AT2G47430.1 31.126 302 179 8 380 666 383 670 5.40e-29 125
Msa0577680 AT2G47430.1 37.594 133 59 5 836 952 981 1105 9.25e-14 76.6
Msa0577680 AT3G04580.2 34.286 140 81 3 828 965 629 759 1.78e-15 81.6
Msa0577680 AT3G04580.2 21.711 456 292 14 379 817 354 761 1.18e-12 72.8
Msa0577680 AT3G04580.1 34.286 140 81 3 828 965 629 759 1.78e-15 81.6
Msa0577680 AT3G04580.1 21.711 456 292 14 379 817 354 761 1.18e-12 72.8
Msa0577680 AT3G23150.1 35.252 139 74 3 837 970 642 769 6.58e-15 79.7

Find 238 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACTTTGGTGACCCTTTC+AGG 0.130440 4_1:-82012952 Msa0577680:CDS
TTTCTTAAATTTAATCTATT+TGG 0.136484 4_1:-82015414 Msa0577680:five_prime_UTR
ATTGCATACCCATCCATTTC+TGG 0.150261 4_1:+82010440 None:intergenic
AACTGCATTCCCTTTGTTTA+TGG 0.188548 4_1:+82010931 None:intergenic
ATTTCTGTTGATATGCTTTC+TGG 0.198728 4_1:-82014303 Msa0577680:CDS
GATCAGGCAAAGATTGAATT+TGG 0.209090 4_1:-82012288 Msa0577680:CDS
TTCTTAAAAGTGCCGGAATT+TGG 0.238320 4_1:-82009425 Msa0577680:three_prime_UTR
ACCAGTTAGTAGTAGAAAAT+TGG 0.238353 4_1:-82015302 Msa0577680:five_prime_UTR
ATCAATTTCTGTTGAGAGTT+AGG 0.255426 4_1:-82015524 Msa0577680:five_prime_UTR
GTCACTTATAAATGAGGTTT+TGG 0.260867 4_1:-82012310 Msa0577680:CDS
ATTCTAATTGTTGATGATAA+TGG 0.264746 4_1:-82010599 Msa0577680:CDS
AGGGATGATGCATATGCTTA+TGG 0.272594 4_1:-82012400 Msa0577680:CDS
GGCCTCATGAATGGCGAAAT+TGG 0.276640 4_1:-82011205 Msa0577680:CDS
GTTACTTATAGGTATGTATT+AGG 0.278145 4_1:-82009562 Msa0577680:three_prime_UTR
CTACTGATTGGCCAAATAAA+TGG 0.280511 4_1:+82009330 None:intergenic
GGAACAAGAGAACTCTAAAT+AGG 0.280932 4_1:-82010667 Msa0577680:CDS
CAACAGTACTATCAGTATAT+TGG 0.283486 4_1:-82015143 Msa0577680:CDS
TTCCTATTGGCCCCTCCTTT+TGG 0.287596 4_1:-82015580 Msa0577680:five_prime_UTR
GAAAAGAAACAGAAAAGTTT+TGG 0.287824 4_1:-82009865 Msa0577680:three_prime_UTR
TCTCATGGGCAACTCAATTA+AGG 0.288486 4_1:-82011980 Msa0577680:intron
CTTGTTATTGCTCTCCTTGT+TGG 0.291084 4_1:-82012765 Msa0577680:CDS
ATGTATGGCTCAAATATATC+AGG 0.301140 4_1:-82013001 Msa0577680:CDS
GGATCACCTATTAGCAGTTT+AGG 0.310227 4_1:+82012030 None:intergenic
GGTATGTAATAGTTACTTAT+AGG 0.312340 4_1:-82009573 Msa0577680:three_prime_UTR
TAAAATGATTCGAGTCAAAA+AGG 0.313653 4_1:+82009769 None:intergenic
TCTCTTAGCCATCTTCTTGT+TGG 0.315553 4_1:-82010629 Msa0577680:CDS
CTCTTAGCCATCTTCTTGTT+GGG 0.318317 4_1:-82010628 Msa0577680:CDS
CGATTATGCTGTAGAGGAAT+TGG 0.327475 4_1:-82014391 Msa0577680:CDS
TCAGTTCGACGCATGTTTCA+TGG 0.329522 4_1:-82010474 Msa0577680:CDS
GTTGCTTGGATCCTTTCATT+TGG 0.349913 4_1:+82013810 None:intergenic
TCATCGGTGTTCTGATTTCA+TGG 0.354261 4_1:+82012534 None:intergenic
ATAAAGGAATGATAAGATTC+TGG 0.357594 4_1:+82015499 None:intergenic
AACAGTACTATCAGTATATT+GGG 0.359905 4_1:-82015142 Msa0577680:CDS
GAAAGGATCCAAGCAACTAA+TGG 0.361437 4_1:-82013804 Msa0577680:CDS
ATTGGAGCCATCCCCTCTTC+AGG 0.361853 4_1:-82014373 Msa0577680:CDS
GGTTGATTGAAGTGAAATAA+AGG 0.362623 4_1:-82009541 Msa0577680:three_prime_UTR
GGATATTCAAATGCCAGAAA+TGG 0.363538 4_1:-82010453 Msa0577680:CDS
AATAAAGGAAAGTAGGTTCT+TGG 0.363674 4_1:-82009526 Msa0577680:three_prime_UTR
CCTGAGTTGGAAAGGATTCA+AGG 0.368177 4_1:-82011434 Msa0577680:CDS
AAATAGACATAGCTTGAATA+TGG 0.369912 4_1:+82014931 None:intergenic
GCATAATCGTTCTTATGAAC+TGG 0.371534 4_1:+82014405 None:intergenic
CAAGTTCCTAAACTGCTAAT+AGG 0.375479 4_1:-82012036 Msa0577680:CDS
ACCCTTATAAAATAAAATAA+AGG 0.390649 4_1:+82015483 None:intergenic
AACTTTATCGGGAAGTTTCT+CGG 0.392394 4_1:-82009904 Msa0577680:CDS
ACTTTACATGGAAGAATCAA+TGG 0.396819 4_1:+82009640 None:intergenic
ACACAGAAGTATCTATAAAC+TGG 0.396943 4_1:-82010033 Msa0577680:CDS
TCATTTGGAGTTGCATTTGA+TGG 0.397149 4_1:+82013825 None:intergenic
ATTATTTGCCGAAACCTTCC+AGG 0.397385 4_1:+82012009 None:intergenic
TTTGAGCCATACATGGCAAT+TGG 0.398441 4_1:+82013010 None:intergenic
GTGTTGCGTGCAAGAGAATC+AGG 0.399039 4_1:-82013936 Msa0577680:CDS
TTGAAGCCGAACAACTTTAT+CGG 0.400783 4_1:-82009916 Msa0577680:CDS
GGAAACATGAGATGCATTGC+AGG 0.401426 4_1:-82012931 Msa0577680:intron
CAGAACCACGCGAGTGTTCA+AGG 0.407862 4_1:+82015699 None:intergenic
GATGACTGCAGATGTAATTC+AGG 0.412226 4_1:-82009993 Msa0577680:CDS
AATATTTGAAAGCCAAATTC+CGG 0.412259 4_1:+82009413 None:intergenic
TCTTGATTGAGCAGGAAGTT+TGG 0.412734 4_1:-82010898 Msa0577680:CDS
GCTGCAATATTAACTTCAAT+TGG 0.416348 4_1:-82012792 Msa0577680:CDS
GAACAAGAGAACTCTAAATA+GGG 0.416973 4_1:-82010666 Msa0577680:CDS
TGTTTATGGTTGACACCCCT+TGG 0.417467 4_1:+82010945 None:intergenic
CTATCTCATCGTCTCACAAA+AGG 0.420162 4_1:-82009821 Msa0577680:three_prime_UTR
TATGCCACACCACTTGTTAG+AGG 0.422210 4_1:+82014516 None:intergenic
ATTGTATCTGTTGAAGATAC+AGG 0.422648 4_1:-82011349 Msa0577680:CDS
GTTGGACTGTAGTGTCTTTG+TGG 0.426681 4_1:-82015064 Msa0577680:CDS
ACTAAGCATTAGCAAGTGTT+TGG 0.428271 4_1:-82011230 Msa0577680:CDS
ATGCATACCCATTAGTTGCT+TGG 0.431107 4_1:+82013796 None:intergenic
TTAACAAGAATGAACAACTT+TGG 0.432009 4_1:+82010809 None:intergenic
AAAGGATCCAAGCAACTAAT+GGG 0.437942 4_1:-82013803 Msa0577680:intron
TGAAAGGGCTAGGATTGTTC+AGG 0.438583 4_1:-82014976 Msa0577680:CDS
ATTTGATGTTGAGTCATTAG+TGG 0.439863 4_1:-82013107 Msa0577680:CDS
CTATTTGTTATTATGTTGTC+AGG 0.440816 4_1:+82015548 None:intergenic
TCCCGAAAACATGGAGGAAC+TGG 0.442693 4_1:-82011259 Msa0577680:CDS
GCAAATAATTACTAATCTCA+TGG 0.446857 4_1:-82011995 Msa0577680:CDS
TCTGATAAGTCCCAAGGAAA+AGG 0.449413 4_1:-82012198 Msa0577680:CDS
ATATTGCTAAACAGGTATCT+TGG 0.449675 4_1:-82013136 Msa0577680:intron
TGATAGGGAGTGTGCATAGT+AGG 0.450644 4_1:-82009698 Msa0577680:three_prime_UTR
AAACATGGAGGAACTGGTAT+TGG 0.453248 4_1:-82011253 Msa0577680:CDS
TTTACTGCTGTCTTCGCCAA+TGG 0.460268 4_1:-82011145 Msa0577680:CDS
AACTTCCCGATAAAGTTGTT+CGG 0.460960 4_1:+82009910 None:intergenic
CATGTCAGCACTCTTAACTT+TGG 0.464215 4_1:-82012965 Msa0577680:CDS
TCTGCAGTCATCGCTAAAAT+CGG 0.464289 4_1:+82010004 None:intergenic
GGAGATTGTTCATTCTATAG+AGG 0.466518 4_1:-82011515 Msa0577680:CDS
GCATCTCATGTTTCCTGAAA+GGG 0.466982 4_1:+82012939 None:intergenic
AGATTTAGATGTAACTCAAC+AGG 0.467158 4_1:-82012373 Msa0577680:CDS
CATCGGTGTTCTGATTTCAT+GGG 0.467349 4_1:+82012535 None:intergenic
TTAAATTTAATCTATTTGGT+TGG 0.468106 4_1:-82015410 Msa0577680:five_prime_UTR
TGAAGCCGAACAACTTTATC+GGG 0.468450 4_1:-82009915 Msa0577680:CDS
ATACAAAGATGTGGCTGAAA+TGG 0.468585 4_1:-82015202 Msa0577680:exon
TGTTGTAAGTATTCATTAAG+TGG 0.468911 4_1:-82015233 Msa0577680:five_prime_UTR
ACTCATCCAATTGCCATGTA+TGG 0.469930 4_1:-82013016 Msa0577680:CDS
AGGTTGGATTATTAAGAGAA+TGG 0.472979 4_1:-82014445 Msa0577680:CDS
TAAAGTTGTTCGGCTTCAAA+TGG 0.473516 4_1:+82009920 None:intergenic
GAAAATAAGTACCTGATCAA+TGG 0.475341 4_1:+82014872 None:intergenic
TACCAAAAGGAGGGGCCAAT+AGG 0.475422 4_1:+82015578 None:intergenic
CATGTAAAGTTGTGTAGTCT+AGG 0.478649 4_1:-82009594 Msa0577680:three_prime_UTR
TCTTGTAGACGGCAAATGTA+AGG 0.478724 4_1:+82013856 None:intergenic
GACAGCAGTAAAAGTAAAAG+TGG 0.479310 4_1:+82011156 None:intergenic
CTTTACATGGAAGAATCAAT+GGG 0.480380 4_1:+82009641 None:intergenic
CCTTGGCATTCACGTTGAAA+CGG 0.483428 4_1:-82010981 Msa0577680:CDS
TATAATATATACATGGTTGA+TGG 0.485646 4_1:+82009492 None:intergenic
TAAGAGTGCTTCATTATGAA+AGG 0.486345 4_1:-82014488 Msa0577680:CDS
TGCTAGCATGTGTGATGAAA+GGG 0.486559 4_1:-82014991 Msa0577680:CDS
GACGAACCTACTTGCATGAA+TGG 0.486640 4_1:+82011286 None:intergenic
ACCTGCATATTCAGAATTTG+AGG 0.486963 4_1:-82011071 Msa0577680:CDS
CCCTCAAATTCTGAATATGC+AGG 0.488168 4_1:+82011070 None:intergenic
TCTAGTGTCACTTATAAATG+AGG 0.488685 4_1:-82012316 Msa0577680:CDS
CCTTGAATCCTTTCCAACTC+AGG 0.489334 4_1:+82011434 None:intergenic
CTTCTCAAATCAAATCGGTT+AGG 0.491529 4_1:-82013885 Msa0577680:CDS
AAACTGCTAATAGGTGATCC+TGG 0.491656 4_1:-82012027 Msa0577680:CDS
GAGTCCCTCAGCCATTGATC+AGG 0.494009 4_1:-82014883 Msa0577680:intron
TCAGGCTTCTCAAATCAAAT+CGG 0.494173 4_1:-82013890 Msa0577680:CDS
TGTTGACATGGGTATTGGGT+TGG 0.494780 4_1:-82015082 Msa0577680:CDS
TGTTGATATGCTTTCTGGAA+AGG 0.498415 4_1:-82014298 Msa0577680:intron
AGAGAGTGAAGAGAGAGTTG+TGG 0.498961 4_1:-82015115 Msa0577680:CDS
AGCATTAGCAAGTGTTTGGT+TGG 0.499734 4_1:-82011226 Msa0577680:CDS
GAAGTGAAATAAAGGAAAGT+AGG 0.500007 4_1:-82009533 Msa0577680:three_prime_UTR
TTCAAGGCTTTCAGTCAAGA+TGG 0.501177 4_1:-82011418 Msa0577680:CDS
CCTTGTGTTCTTAAAAGTGC+CGG 0.502001 4_1:-82009432 Msa0577680:three_prime_UTR
TTCAGTCAAGATGGACCACT+TGG 0.502714 4_1:-82011409 Msa0577680:CDS
TGCTAAACAGGTATCTTGGT+GGG 0.506352 4_1:-82013132 Msa0577680:intron
TACAGCGAGAGATGAATGTT+AGG 0.506665 4_1:-82010688 Msa0577680:CDS
AAGACAGCATCTTATTATCA+AGG 0.509239 4_1:-82015385 Msa0577680:five_prime_UTR
TCGTCGATCTCCCGAAAACA+TGG 0.509308 4_1:-82011268 Msa0577680:CDS
AAAGGGAGGAAATATTGAAC+TGG 0.511995 4_1:-82009803 Msa0577680:three_prime_UTR
TGTTTGGTTGGCCTCATGAA+TGG 0.512361 4_1:-82011214 Msa0577680:CDS
TGCTGTTTATGAAAGATCCC+TGG 0.513895 4_1:-82009739 Msa0577680:three_prime_UTR
TGCCTAAGGTGTGGAATGGA+TGG 0.514612 4_1:-82009956 Msa0577680:CDS
GTTCTAATGAGTGTAAAATA+CGG 0.515138 4_1:-82011114 Msa0577680:CDS
TATCTCATCGTCTCACAAAA+GGG 0.516880 4_1:-82009820 Msa0577680:three_prime_UTR
ACTGAGAGACTGACTTTACA+TGG 0.518038 4_1:+82009628 None:intergenic
ATTTGAGGGTATGAATGCAT+TGG 0.519831 4_1:-82011056 Msa0577680:CDS
CAACGTGAATGCCAAGGCGT+TGG 0.521697 4_1:+82010987 None:intergenic
CAACATGGTCTTGATTGAGC+AGG 0.522436 4_1:-82010906 Msa0577680:CDS
AATCCAGAAAATACATTGAG+TGG 0.523791 4_1:-82011478 Msa0577680:CDS
TGCATCTCATGTTTCCTGAA+AGG 0.524248 4_1:+82012938 None:intergenic
GTGCAAGAGAATCAGGCAAA+GGG 0.525841 4_1:-82013929 Msa0577680:CDS
GTCAGGTAGCAGCTACCAAA+AGG 0.526621 4_1:+82015565 None:intergenic
CGGTTTCAGATTTGAACCAA+GGG 0.529721 4_1:-82010961 Msa0577680:CDS
TAGGTGATCCTGGAAGGTTT+CGG 0.530999 4_1:-82012017 Msa0577680:CDS
CTCTAGCATGAACTAACTGC+AGG 0.531152 4_1:+82015645 None:intergenic
GAAATCAGAACACCGATGAA+TGG 0.536195 4_1:-82012530 Msa0577680:CDS
TGATATATTTGAGCCATACA+TGG 0.537691 4_1:+82013003 None:intergenic
ATTCAAATGCCAGAAATGGA+TGG 0.537787 4_1:-82010449 Msa0577680:CDS
GTGAATCGTGCAGTAGCAGC+TGG 0.538402 4_1:-82010575 Msa0577680:CDS
GTCAGAACAGCACAGGAAAG+TGG 0.540070 4_1:-82012345 Msa0577680:CDS
AGAGAATTTGCAAAAGAGAG+AGG 0.541398 4_1:+82015811 None:intergenic
CAAATAATTACTAATCTCAT+GGG 0.541408 4_1:-82011994 Msa0577680:CDS
TTGTGAAAAGTTGCCTGAGT+TGG 0.542609 4_1:-82011447 Msa0577680:CDS
GCATGTGTGATGAAAGGGCT+AGG 0.544298 4_1:-82014986 Msa0577680:CDS
GAACAATCTCCTCAACAAGA+TGG 0.546858 4_1:+82011527 None:intergenic
AGATGATTACCATGAAATGA+TGG 0.547933 4_1:-82012700 Msa0577680:CDS
CCTGCATATTCAGAATTTGA+GGG 0.551039 4_1:-82011070 Msa0577680:CDS
TATAGTATAATTTATCTATG+TGG 0.552181 4_1:+82009374 None:intergenic
TGTGACTATCCATCTTGTTG+AGG 0.552354 4_1:-82011536 Msa0577680:CDS
AATTTGAGAAGCAACAAGGT+TGG 0.555193 4_1:-82014461 Msa0577680:CDS
GTATCTTGTGCAAATATGAC+AGG 0.555330 4_1:+82014339 None:intergenic
CAATATCACATCCAACGCCT+TGG 0.556712 4_1:-82010998 Msa0577680:CDS
ATTGATGAGATCACTAGAGA+TGG 0.556798 4_1:+82011375 None:intergenic
CAAAGATGTGGCTGAAATGG+TGG 0.559449 4_1:-82015199 Msa0577680:exon
AGTAGGATCCAAGTTGTAGT+TGG 0.559658 4_1:-82009681 Msa0577680:three_prime_UTR
GCAAGCATGCTTGCCCTGAG+TGG 0.560278 4_1:+82010719 None:intergenic
AAGAGTGCTTCATTATGAAA+GGG 0.560545 4_1:-82014487 Msa0577680:CDS
ATTTGATTTGAGAAGCCTGA+AGG 0.561335 4_1:+82013893 None:intergenic
TGCTAATAGGTGATCCTGGA+AGG 0.562191 4_1:-82012023 Msa0577680:CDS
CAAATGCAACTCCAAATGAA+AGG 0.563584 4_1:-82013821 Msa0577680:CDS
TTCAAATGCCAGAAATGGAT+GGG 0.564303 4_1:-82010448 Msa0577680:intron
TTGCTAGCATGTGTGATGAA+AGG 0.564904 4_1:-82014992 Msa0577680:CDS
GGGTGTCAACCATAAACAAA+GGG 0.565304 4_1:-82010940 Msa0577680:CDS
AAGTACCTGATCAATGGCTG+AGG 0.566544 4_1:+82014878 None:intergenic
AGCAGATGTTGCAAAATCCC+AGG 0.568472 4_1:-82012655 Msa0577680:intron
ACAAGAATGAACAACTTTGG+AGG 0.570727 4_1:+82010812 None:intergenic
TATTCTTCCTGAAGAGGGGA+TGG 0.575235 4_1:+82014366 None:intergenic
TTAGCCATCTTCTTGTTGGG+AGG 0.575871 4_1:-82010625 Msa0577680:CDS
GAGCATATTCTTCCTGAAGA+GGG 0.577257 4_1:+82014361 None:intergenic
ATGAGAGGTTGAGATTCTCT+AGG 0.586217 4_1:+82011316 None:intergenic
GGACAGAGTCACAGAGACAA+TGG 0.588828 4_1:-82015873 Msa0577680:five_prime_UTR
ATCCAATTTCGCCATTCATG+AGG 0.589404 4_1:+82011203 None:intergenic
TGTATGGCTCAAATATATCA+GGG 0.591616 4_1:-82013000 Msa0577680:CDS
TTGCTAAACAGGTATCTTGG+TGG 0.592307 4_1:-82013133 Msa0577680:intron
GGAGCATATTCTTCCTGAAG+AGG 0.594545 4_1:+82014360 None:intergenic
TTTGATTTGAGAAGCCTGAA+GGG 0.594834 4_1:+82013894 None:intergenic
ATTAGAACTGAGGAGTCCAT+TGG 0.595386 4_1:+82011129 None:intergenic
CTATCATCACAAAACCACTC+AGG 0.595668 4_1:-82010733 Msa0577680:CDS
AATATTGCAGCACATGGCAA+AGG 0.595803 4_1:+82012804 None:intergenic
TGAGTCATATAATATATACA+TGG 0.596965 4_1:+82009485 None:intergenic
TAAGAACGATTATGCTGTAG+AGG 0.600889 4_1:-82014397 Msa0577680:CDS
ACGGTTTCAGATTTGAACCA+AGG 0.601766 4_1:-82010962 Msa0577680:CDS
CGTGCAAGAGAATCAGGCAA+AGG 0.602570 4_1:-82013930 Msa0577680:CDS
TCACCTAAAACACCATTCAT+CGG 0.602655 4_1:+82012518 None:intergenic
AAGTAGGTTCTTGGAAACAA+AGG 0.608113 4_1:-82009517 Msa0577680:three_prime_UTR
AAAAGTTGCCTGAGTTGGAA+AGG 0.608555 4_1:-82011442 Msa0577680:CDS
TACAGGTAGAATCAGAGAGA+TGG 0.608677 4_1:-82010068 Msa0577680:CDS
AGGTAGCAGCTACCAAAAGG+AGG 0.609218 4_1:+82015568 None:intergenic
TTCACTCCATTCATGCAAGT+AGG 0.609373 4_1:-82011292 Msa0577680:CDS
ATTTGGTAAGCTAGAGCTTG+AGG 0.609575 4_1:-82012271 Msa0577680:CDS
GGAATATGTCAGAACAGCAC+AGG 0.609824 4_1:-82012352 Msa0577680:CDS
GTTTACAAGCTACTGAGAAG+AGG 0.609832 4_1:-82015025 Msa0577680:CDS
CATGAGAAATGCCTAAGGTG+TGG 0.612289 4_1:-82009965 Msa0577680:CDS
ACTATAGTATAGTGTAAGAG+TGG 0.612413 4_1:-82009357 Msa0577680:three_prime_UTR
GGTAGCAGCTACCAAAAGGA+GGG 0.612615 4_1:+82015569 None:intergenic
TATCATCACAAAACCACTCA+GGG 0.614790 4_1:-82010732 Msa0577680:CDS
ATTGCAGCACATGGCAAAGG+CGG 0.615431 4_1:+82012807 None:intergenic
GGGGTGTCAACCATAAACAA+AGG 0.619294 4_1:-82010941 Msa0577680:CDS
CATAGAAAATATGTCCAACA+AGG 0.621926 4_1:+82012751 None:intergenic
TTTGAGAGGCCTCTAACAAG+TGG 0.622010 4_1:-82014525 Msa0577680:CDS
GCTAAACAGGTATCTTGGTG+GGG 0.627851 4_1:-82013131 Msa0577680:intron
CATGCGTCGAACTGATGAGG+TGG 0.627952 4_1:+82010482 None:intergenic
CCGTTTCAACGTGAATGCCA+AGG 0.630331 4_1:+82010981 None:intergenic
TGGAAGATATCTCTTGTAGA+CGG 0.637440 4_1:+82013845 None:intergenic
GAAATGCCTAAGGTGTGGAA+TGG 0.638335 4_1:-82009960 Msa0577680:CDS
CTACACATGAGAAATGCCTA+AGG 0.639949 4_1:-82009970 Msa0577680:CDS
GAACAATTTGAGAAGCAACA+AGG 0.640709 4_1:-82014465 Msa0577680:CDS
AGTACCTGATCAATGGCTGA+GGG 0.641644 4_1:+82014879 None:intergenic
AGCATATTCTTCCTGAAGAG+GGG 0.643515 4_1:+82014362 None:intergenic
GTAGCAGCTACCAAAAGGAG+GGG 0.646610 4_1:+82015570 None:intergenic
GAAGTTAATATTGCAGCACA+TGG 0.648248 4_1:+82012798 None:intergenic
GTCCCAAGGAAAAGGAGTCG+AGG 0.651906 4_1:-82012190 Msa0577680:intron
TCTGTTGAAGATACAGGTGA+CGG 0.654876 4_1:-82011343 Msa0577680:CDS
GAGTCACATATACAAAGATG+TGG 0.657158 4_1:-82015211 Msa0577680:exon
CTCATCGTCTCACAAAAGGG+AGG 0.657380 4_1:-82009817 Msa0577680:three_prime_UTR
GCCTAAGGTGTGGAATGGAT+GGG 0.659789 4_1:-82009955 Msa0577680:CDS
TCTGATTTCATGGGAAACAG+TGG 0.660492 4_1:+82012544 None:intergenic
GATGTGGTTTGTGTTAGCAG+TGG 0.662109 4_1:-82010530 Msa0577680:CDS
ACCCATCCATTCCACACCTT+AGG 0.666090 4_1:+82009954 None:intergenic
TCTAGCATGAACTAACTGCA+GGG 0.666189 4_1:+82015646 None:intergenic
TTGCACGCAACACATTATCA+CGG 0.668088 4_1:+82013946 None:intergenic
AGCACAAGGAAAATCAGCCA+CGG 0.673243 4_1:-82010839 Msa0577680:CDS
AAACATGCGTCGAACTGATG+AGG 0.675854 4_1:+82010479 None:intergenic
AAAGATGTGGCTGAAATGGT+GGG 0.675883 4_1:-82015198 Msa0577680:exon
GAGGCCTCTAACAAGTGGTG+TGG 0.676496 4_1:-82014520 Msa0577680:CDS
TGCAAGAGAATCAGGCAAAG+GGG 0.689158 4_1:-82013928 Msa0577680:CDS
TCGATCTCCCGAAAACATGG+AGG 0.692524 4_1:-82011265 Msa0577680:CDS
GTATGGCTCAAATATATCAG+GGG 0.693592 4_1:-82012999 Msa0577680:CDS
TCAAACCTTGAACACTCGCG+TGG 0.695853 4_1:-82015704 Msa0577680:five_prime_UTR
GGTTTCAGATTTGAACCAAG+GGG 0.702437 4_1:-82010960 Msa0577680:CDS
AGGGAATGCAGTTATCAACA+TGG 0.702500 4_1:-82010921 Msa0577680:CDS
ATGGAAGAGAAAGAACCAAG+TGG 0.711725 4_1:+82011394 None:intergenic
ATGAATGGAGTGAAGATGAG+AGG 0.715966 4_1:+82011301 None:intergenic
ACAACTTTGGAGGAAAACCG+TGG 0.762101 4_1:+82010822 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCCTTTATTTTATTTTATA+AGG - chr4_1:82009768-82009787 Msa0577680:three_prime_UTR 10.0%
!!! TCCTTTATTTTATTTTATAA+GGG - chr4_1:82009769-82009788 Msa0577680:three_prime_UTR 10.0%
!! TTTCTTAAATTTAATCTATT+TGG - chr4_1:82009839-82009858 Msa0577680:three_prime_UTR 10.0%
!!! CTTTATTTTATATTTTGTAA+TGG + chr4_1:82013410-82013429 None:intergenic 10.0%
!!! ATATAATATATTTTCTCAAC+TGG - chr4_1:82009350-82009369 Msa0577680:three_prime_UTR 15.0%
!! ACCCTTATAAAATAAAATAA+AGG + chr4_1:82009773-82009792 None:intergenic 15.0%
!! TTAAATTTAATCTATTTGGT+TGG - chr4_1:82009843-82009862 Msa0577680:three_prime_UTR 15.0%
!! AAGAAAAAGAGAAATAATTA+AGG + chr4_1:82009900-82009919 None:intergenic 15.0%
!! TAAAATCTTAATTGTTTGAT+TGG - chr4_1:82010643-82010662 Msa0577680:CDS 15.0%
!! AAAATCTTAATTGTTTGATT+GGG - chr4_1:82010644-82010663 Msa0577680:CDS 15.0%
!!! GTTTCTTGTTAAATTTTTTA+AGG - chr4_1:82010994-82011013 Msa0577680:CDS 15.0%
!!! TTATCTTTTGTTATAGAAAT+AGG - chr4_1:82011845-82011864 Msa0577680:intron 15.0%
!!! GTAATATATTTTTCATTTCT+TGG - chr4_1:82013085-82013104 Msa0577680:CDS 15.0%
!!! AACTATAAATCATCAAATTT+TGG + chr4_1:82014856-82014875 None:intergenic 15.0%
!!! AAATTTGATGATTTATAGTT+TGG - chr4_1:82014856-82014875 Msa0577680:intron 15.0%
!! TACTTAACAGTTTATATAAA+AGG - chr4_1:82014967-82014986 Msa0577680:CDS 15.0%
!!! ATTGATAATTACATAAATTG+TGG + chr4_1:82015095-82015114 None:intergenic 15.0%
!! TATAGTATAATTTATCTATG+TGG + chr4_1:82015882-82015901 None:intergenic 15.0%
!!! TCAATAGTTCATGTAATTTT+TGG - chr4_1:82012037-82012056 Msa0577680:CDS 20.0%
!! GCAATATACAAGAAATTAAA+AGG + chr4_1:82012104-82012123 None:intergenic 20.0%
!! CAAACAATTAAATCATGAAA+AGG + chr4_1:82013166-82013185 None:intergenic 20.0%
!!! CTTTTCATGATTTAATTGTT+TGG - chr4_1:82013164-82013183 Msa0577680:intron 20.0%
!! CAAATAATTACTAATCTCAT+GGG - chr4_1:82013259-82013278 Msa0577680:intron 20.0%
!!! ATTCTAATTGTTGATGATAA+TGG - chr4_1:82014654-82014673 Msa0577680:intron 20.0%
!! AAATTTCCACATAAAAAATG+TGG - chr4_1:82014890-82014909 Msa0577680:CDS 20.0%
!! AAAAACAATATTCTAAACCA+GGG + chr4_1:82015534-82015553 None:intergenic 20.0%
!!! TAGAATATTGTTTTTGTGAT+AGG - chr4_1:82015539-82015558 Msa0577680:five_prime_UTR 20.0%
!!! AGAATATTGTTTTTGTGATA+GGG - chr4_1:82015540-82015559 Msa0577680:five_prime_UTR 20.0%
!! TATAATATATACATGGTTGA+TGG + chr4_1:82015764-82015783 None:intergenic 20.0%
!! TGAGTCATATAATATATACA+TGG + chr4_1:82015771-82015790 None:intergenic 20.0%
!!! CTATTTGTTATTATGTTGTC+AGG + chr4_1:82009708-82009727 None:intergenic 25.0%
! ATAAAGGAATGATAAGATTC+TGG + chr4_1:82009757-82009776 None:intergenic 25.0%
!!! CACAACATTTTTTAGTGATT+AGG - chr4_1:82009997-82010016 Msa0577680:CDS 25.0%
! TGTTGTAAGTATTCATTAAG+TGG - chr4_1:82010020-82010039 Msa0577680:CDS 25.0%
! AACAGTACTATCAGTATATT+GGG - chr4_1:82010111-82010130 Msa0577680:intron 25.0%
! AAATAGACATAGCTTGAATA+TGG + chr4_1:82010325-82010344 None:intergenic 25.0%
! TAGAACAATCTTTGATCAAA+GGG + chr4_1:82010437-82010456 None:intergenic 25.0%
! CTATGGTTTAAATATCCATT+AGG + chr4_1:82011047-82011066 None:intergenic 25.0%
! CAGATGATTTATCTATTCTA+TGG + chr4_1:82011064-82011083 None:intergenic 25.0%
! ATGAACAAAGAACAAACTAA+TGG + chr4_1:82011512-82011531 None:intergenic 25.0%
! CTTACATTATGGTATAGTTT+GGG + chr4_1:82011939-82011958 None:intergenic 25.0%
! TCTTACATTATGGTATAGTT+TGG + chr4_1:82011940-82011959 None:intergenic 25.0%
! TTTCTTGTATATTGCTAAAC+AGG - chr4_1:82012109-82012128 Msa0577680:intron 25.0%
! CAAGAAACTGCAATTATAAT+TGG + chr4_1:82012689-82012708 None:intergenic 25.0%
!! TGTCTGATTTTCAACTATTT+AGG - chr4_1:82012788-82012807 Msa0577680:CDS 25.0%
! TAGAACAAAGTTATGGTTTA+GGG + chr4_1:82012821-82012840 None:intergenic 25.0%
! ATAGAACAAAGTTATGGTTT+AGG + chr4_1:82012822-82012841 None:intergenic 25.0%
! TGCATTATAGAACAAAGTTA+TGG + chr4_1:82012828-82012847 None:intergenic 25.0%
!! TTGTTCTATAATGCATTTTC+AGG - chr4_1:82012833-82012852 Msa0577680:intron 25.0%
!! TGTTCTATAATGCATTTTCA+GGG - chr4_1:82012834-82012853 Msa0577680:intron 25.0%
! AAAATTTCACGATGATCAAA+GGG + chr4_1:82013113-82013132 None:intergenic 25.0%
! GCAAATAATTACTAATCTCA+TGG - chr4_1:82013258-82013277 Msa0577680:intron 25.0%
! GTTCTAATGAGTGTAAAATA+CGG - chr4_1:82014139-82014158 Msa0577680:intron 25.0%
! TTAACAAGAATGAACAACTT+TGG + chr4_1:82014447-82014466 None:intergenic 25.0%
!! GAAAAGAAACAGAAAAGTTT+TGG - chr4_1:82015388-82015407 Msa0577680:five_prime_UTR 25.0%
! TAAAATGATTCGAGTCAAAA+AGG + chr4_1:82015487-82015506 None:intergenic 25.0%
! CAAAAACAATATTCTAAACC+AGG + chr4_1:82015535-82015554 None:intergenic 25.0%
! GGTATGTAATAGTTACTTAT+AGG - chr4_1:82015680-82015699 Msa0577680:five_prime_UTR 25.0%
! GTTACTTATAGGTATGTATT+AGG - chr4_1:82015691-82015710 Msa0577680:five_prime_UTR 25.0%
! AATATTTGAAAGCCAAATTC+CGG + chr4_1:82015843-82015862 None:intergenic 25.0%
! ATTTTCTCAACTGGACATTT+TGG - chr4_1:82009359-82009378 Msa0577680:three_prime_UTR 30.0%
!!! GGTTCTGTTGTTCTTATTTT+TGG - chr4_1:82009570-82009589 Msa0577680:three_prime_UTR 30.0%
! ATCTTTTGTAGCTTTCCTAT+TGG - chr4_1:82009660-82009679 Msa0577680:three_prime_UTR 30.0%
ATCAATTTCTGTTGAGAGTT+AGG - chr4_1:82009729-82009748 Msa0577680:three_prime_UTR 30.0%
AAGACAGCATCTTATTATCA+AGG - chr4_1:82009868-82009887 Msa0577680:exon 30.0%
ACCAGTTAGTAGTAGAAAAT+TGG - chr4_1:82009951-82009970 Msa0577680:CDS 30.0%
! ACCAATTTTCTACTACTAAC+TGG + chr4_1:82009955-82009974 None:intergenic 30.0%
CAACAGTACTATCAGTATAT+TGG - chr4_1:82010110-82010129 Msa0577680:intron 30.0%
GAAAATAAGTACCTGATCAA+TGG + chr4_1:82010384-82010403 None:intergenic 30.0%
CTAGAACAATCTTTGATCAA+AGG + chr4_1:82010438-82010457 None:intergenic 30.0%
CTTTGATCAAAGATTGTTCT+AGG - chr4_1:82010436-82010455 Msa0577680:intron 30.0%
!! TAAGAGTGCTTCATTATGAA+AGG - chr4_1:82010765-82010784 Msa0577680:CDS 30.0%
!! AAGAGTGCTTCATTATGAAA+GGG - chr4_1:82010766-82010785 Msa0577680:CDS 30.0%
AGGTTGGATTATTAAGAGAA+TGG - chr4_1:82010808-82010827 Msa0577680:CDS 30.0%
ATTTCTGTTGATATGCTTTC+TGG - chr4_1:82010950-82010969 Msa0577680:CDS 30.0%
TACAATAGACTTAAATGTCC+TGG - chr4_1:82011095-82011114 Msa0577680:CDS 30.0%
ATATTCACTTGTTCATCAAC+AGG - chr4_1:82011280-82011299 Msa0577680:CDS 30.0%
CTTCAGAACTTTAGATAAAC+CGG + chr4_1:82011557-82011576 None:intergenic 30.0%
! TTTTTCCCATCAAATGTGAA+TGG + chr4_1:82011608-82011627 None:intergenic 30.0%
ACGAACAGTTGAACATAATT+AGG - chr4_1:82011631-82011650 Msa0577680:intron 30.0%
!!! CTATTTTTTATAAGCTGTCC+TGG + chr4_1:82011791-82011810 None:intergenic 30.0%
TGTTCACTCTTCTTACATTA+TGG + chr4_1:82011950-82011969 None:intergenic 30.0%
GAACTATTGAATTTCAGAGT+AGG + chr4_1:82012027-82012046 None:intergenic 30.0%
ATATTGCTAAACAGGTATCT+TGG - chr4_1:82012117-82012136 Msa0577680:intron 30.0%
ATTTGATGTTGAGTCATTAG+TGG - chr4_1:82012146-82012165 Msa0577680:intron 30.0%
TGATATATTTGAGCCATACA+TGG + chr4_1:82012253-82012272 None:intergenic 30.0%
ATGTATGGCTCAAATATATC+AGG - chr4_1:82012252-82012271 Msa0577680:CDS 30.0%
TGTATGGCTCAAATATATCA+GGG - chr4_1:82012253-82012272 Msa0577680:CDS 30.0%
AACTATGCTGAACATTAAGA+AGG + chr4_1:82012373-82012392 None:intergenic 30.0%
GCTGCAATATTAACTTCAAT+TGG - chr4_1:82012461-82012480 Msa0577680:intron 30.0%
CATAGAAAATATGTCCAACA+AGG + chr4_1:82012505-82012524 None:intergenic 30.0%
! TACTTTTGCAATTCGATTCA+CGG + chr4_1:82012531-82012550 None:intergenic 30.0%
AGATGATTACCATGAAATGA+TGG - chr4_1:82012553-82012572 Msa0577680:CDS 30.0%
! TTTTAAGCTCCATCATTTCA+TGG + chr4_1:82012565-82012584 None:intergenic 30.0%
AGATTTAGATGTAACTCAAC+AGG - chr4_1:82012880-82012899 Msa0577680:intron 30.0%
!! TCTAGTGTCACTTATAAATG+AGG - chr4_1:82012937-82012956 Msa0577680:CDS 30.0%
! GTCACTTATAAATGAGGTTT+TGG - chr4_1:82012943-82012962 Msa0577680:CDS 30.0%
!!! TATAAATGAGGTTTTGGATC+AGG - chr4_1:82012949-82012968 Msa0577680:CDS 30.0%
! TTTTGACATACGTTCGATTT+TGG - chr4_1:82013012-82013031 Msa0577680:CDS 30.0%
GAAAATTTCACGATGATCAA+AGG + chr4_1:82013114-82013133 None:intergenic 30.0%
AGTGACATGCATGATTAATA+AGG + chr4_1:82013305-82013324 None:intergenic 30.0%
! ATTAATCATGCATGTCACTT+AGG - chr4_1:82013306-82013325 Msa0577680:intron 30.0%
TGTGAACTGCAAAACAATTA+CGG + chr4_1:82013680-82013699 None:intergenic 30.0%
AATCCAGAAAATACATTGAG+TGG - chr4_1:82013775-82013794 Msa0577680:intron 30.0%
! AAACCACTCAATGTATTTTC+TGG + chr4_1:82013781-82013800 None:intergenic 30.0%
ATTGTATCTGTTGAAGATAC+AGG - chr4_1:82013904-82013923 Msa0577680:CDS 30.0%
! TTTTACACTCATTAGAACTG+AGG + chr4_1:82014137-82014156 None:intergenic 30.0%
GAACAAGAGAACTCTAAATA+GGG - chr4_1:82014587-82014606 Msa0577680:intron 30.0%
!!! TCTTCTCCACATTTTTTATG+TGG + chr4_1:82014899-82014918 None:intergenic 30.0%
! CATAAATTGTGGTATTTCTG+TGG + chr4_1:82015084-82015103 None:intergenic 30.0%
ATCATCATTGTGTTAGAAGT+TGG - chr4_1:82015127-82015146 Msa0577680:CDS 30.0%
!! ACACAGAAGTATCTATAAAC+TGG - chr4_1:82015220-82015239 Msa0577680:five_prime_UTR 30.0%
! TTTTACTACCAACTACAACT+TGG + chr4_1:82015583-82015602 None:intergenic 30.0%
CTTTACATGGAAGAATCAAT+GGG + chr4_1:82015615-82015634 None:intergenic 30.0%
ACTTTACATGGAAGAATCAA+TGG + chr4_1:82015616-82015635 None:intergenic 30.0%
GGTTGATTGAAGTGAAATAA+AGG - chr4_1:82015712-82015731 Msa0577680:five_prime_UTR 30.0%
GAAGTGAAATAAAGGAAAGT+AGG - chr4_1:82015720-82015739 Msa0577680:five_prime_UTR 30.0%
AATAAAGGAAAGTAGGTTCT+TGG - chr4_1:82015727-82015746 Msa0577680:five_prime_UTR 30.0%
ACTATAGTATAGTGTAAGAG+TGG - chr4_1:82015896-82015915 Msa0577680:five_prime_UTR 30.0%
AGAGAATTTGCAAAAGAGAG+AGG + chr4_1:82009445-82009464 None:intergenic 35.0%
GAGTCACATATACAAAGATG+TGG - chr4_1:82010042-82010061 Msa0577680:CDS 35.0%
ATACAAAGATGTGGCTGAAA+TGG - chr4_1:82010051-82010070 Msa0577680:CDS 35.0%
!! AAATGGTGGGAGAAGATTTT+AGG - chr4_1:82010068-82010087 Msa0577680:CDS 35.0%
!! AATGGTGGGAGAAGATTTTA+GGG - chr4_1:82010069-82010088 Msa0577680:CDS 35.0%
! GAGAAAGCTTTTGTTGACAT+GGG - chr4_1:82010160-82010179 Msa0577680:intron 35.0%
! CTTTTGTTGACATGGGTATT+GGG - chr4_1:82010167-82010186 Msa0577680:intron 35.0%
! ATCAAAGATTGTTCTAGGCA+AGG - chr4_1:82010441-82010460 Msa0577680:intron 35.0%
GAACAATTTGAGAAGCAACA+AGG - chr4_1:82010788-82010807 Msa0577680:CDS 35.0%
AATTTGAGAAGCAACAAGGT+TGG - chr4_1:82010792-82010811 Msa0577680:CDS 35.0%
GCATAATCGTTCTTATGAAC+TGG + chr4_1:82010851-82010870 None:intergenic 35.0%
TAAGAACGATTATGCTGTAG+AGG - chr4_1:82010856-82010875 Msa0577680:CDS 35.0%
GTATCTTGTGCAAATATGAC+AGG + chr4_1:82010917-82010936 None:intergenic 35.0%
! TGTTGATATGCTTTCTGGAA+AGG - chr4_1:82010955-82010974 Msa0577680:CDS 35.0%
ACTAGTTCAGCTGAAAACTT+TGG + chr4_1:82011021-82011040 None:intergenic 35.0%
AGCTGAACTAGTATACCTAA+TGG - chr4_1:82011029-82011048 Msa0577680:CDS 35.0%
ACAAATTCATCGAGTCAGAT+AGG - chr4_1:82011212-82011231 Msa0577680:CDS 35.0%
TCGAGTCAGATAGGATTATA+TGG - chr4_1:82011221-82011240 Msa0577680:CDS 35.0%
!! TTTGATTTGAGAAGCCTGAA+GGG + chr4_1:82011362-82011381 None:intergenic 35.0%
!! ATTTGATTTGAGAAGCCTGA+AGG + chr4_1:82011363-82011382 None:intergenic 35.0%
TCAGGCTTCTCAAATCAAAT+CGG - chr4_1:82011363-82011382 Msa0577680:CDS 35.0%
CTTCTCAAATCAAATCGGTT+AGG - chr4_1:82011368-82011387 Msa0577680:CDS 35.0%
TGGAAGATATCTCTTGTAGA+CGG + chr4_1:82011411-82011430 None:intergenic 35.0%
! TCATTTGGAGTTGCATTTGA+TGG + chr4_1:82011431-82011450 None:intergenic 35.0%
CAAATGCAACTCCAAATGAA+AGG - chr4_1:82011432-82011451 Msa0577680:CDS 35.0%
AAAGGATCCAAGCAACTAAT+GGG - chr4_1:82011450-82011469 Msa0577680:CDS 35.0%
AACACTCCATTCACATTTGA+TGG - chr4_1:82011599-82011618 Msa0577680:intron 35.0%
ACACTCCATTCACATTTGAT+GGG - chr4_1:82011600-82011619 Msa0577680:intron 35.0%
GAACATAATTAGGCCATGTT+TGG - chr4_1:82011641-82011660 Msa0577680:intron 35.0%
CAAATACGTCAATCCAAACA+TGG + chr4_1:82011657-82011676 None:intergenic 35.0%
TGTGAATCGTGATACTGTTT+GGG - chr4_1:82011701-82011720 Msa0577680:intron 35.0%
TATGGGAACAACTTATGACA+TGG - chr4_1:82011730-82011749 Msa0577680:intron 35.0%
TTTATTTCCATGAGCTATCC+AGG - chr4_1:82011770-82011789 Msa0577680:intron 35.0%
CAAGACCTTAACTATCACAA+GGG + chr4_1:82011987-82012006 None:intergenic 35.0%
TCAAGACCTTAACTATCACA+AGG + chr4_1:82011988-82012007 None:intergenic 35.0%
GTATGGCTCAAATATATCAG+GGG - chr4_1:82012254-82012273 Msa0577680:CDS 35.0%
GAAGTTAATATTGCAGCACA+TGG + chr4_1:82012458-82012477 None:intergenic 35.0%
AAAAAGGTAGATGCATACCT+GGG + chr4_1:82012618-82012637 None:intergenic 35.0%
TAAAAAGGTAGATGCATACC+TGG + chr4_1:82012619-82012638 None:intergenic 35.0%
CTTAACCTGCACTAATTACA+CGG - chr4_1:82012657-82012676 Msa0577680:CDS 35.0%
TCACCTAAAACACCATTCAT+CGG + chr4_1:82012738-82012757 None:intergenic 35.0%
GATCAGGCAAAGATTGAATT+TGG - chr4_1:82012965-82012984 Msa0577680:CDS 35.0%
! CTATTTTCTGATAAGTCCCA+AGG - chr4_1:82013049-82013068 Msa0577680:CDS 35.0%
AATTGTTTGGCAATCACAGT+TGG - chr4_1:82013177-82013196 Msa0577680:intron 35.0%
CAAGTTCCTAAACTGCTAAT+AGG - chr4_1:82013217-82013236 Msa0577680:intron 35.0%
TACATGAGCACTTACATGAT+AGG + chr4_1:82013377-82013396 None:intergenic 35.0%
AAGCTATCCTAGAGAGTTTA+TGG - chr4_1:82013467-82013486 Msa0577680:intron 35.0%
TGAGTTTATCTGCTAGCATA+AGG + chr4_1:82013541-82013560 None:intergenic 35.0%
TCAAGTAAGTCAAACCAAAC+AGG - chr4_1:82013558-82013577 Msa0577680:intron 35.0%
TATCTGACTAAAAGCCTGTT+TGG + chr4_1:82013575-82013594 None:intergenic 35.0%
GGAGATTGTTCATTCTATAG+AGG - chr4_1:82013738-82013757 Msa0577680:intron 35.0%
ATTGATGAGATCACTAGAGA+TGG + chr4_1:82013881-82013900 None:intergenic 35.0%
ACTAAGCATTAGCAAGTGTT+TGG - chr4_1:82014023-82014042 Msa0577680:intron 35.0%
TTTGCAAGTGAACCAAAAAC+TGG - chr4_1:82014072-82014091 Msa0577680:intron 35.0%
! GTAAAAGTGGAACCAGTTTT+TGG + chr4_1:82014087-82014106 None:intergenic 35.0%
GACAGCAGTAAAAGTAAAAG+TGG + chr4_1:82014100-82014119 None:intergenic 35.0%
!!! CTGAATATGCAGGTTTTGTT+TGG + chr4_1:82014176-82014195 None:intergenic 35.0%
ACCTGCATATTCAGAATTTG+AGG - chr4_1:82014182-82014201 Msa0577680:intron 35.0%
CCTGCATATTCAGAATTTGA+GGG - chr4_1:82014183-82014202 Msa0577680:intron 35.0%
! ATTTGAGGGTATGAATGCAT+TGG - chr4_1:82014197-82014216 Msa0577680:intron 35.0%
! ACTTTTGCTCTAATAGGTCT+TGG + chr4_1:82014231-82014250 None:intergenic 35.0%
! TGAGACACTTTTGCTCTAAT+AGG + chr4_1:82014237-82014256 None:intergenic 35.0%
! AACTGCATTCCCTTTGTTTA+TGG + chr4_1:82014325-82014344 None:intergenic 35.0%
!!! CTCATTTTTTCGATAGCACA+AGG - chr4_1:82014400-82014419 Msa0577680:CDS 35.0%
ACAAGAATGAACAACTTTGG+AGG + chr4_1:82014444-82014463 None:intergenic 35.0%
!!! AGTGGTTTTGTGATGATAGT+AGG + chr4_1:82014519-82014538 None:intergenic 35.0%
TATCATCACAAAACCACTCA+GGG - chr4_1:82014521-82014540 Msa0577680:CDS 35.0%
GGAACAAGAGAACTCTAAAT+AGG - chr4_1:82014586-82014605 Msa0577680:intron 35.0%
! GGCTAAGAGACAAATTTTGA+AGG + chr4_1:82014614-82014633 None:intergenic 35.0%
GGATATTCAAATGCCAGAAA+TGG - chr4_1:82014800-82014819 Msa0577680:intron 35.0%
ATTCAAATGCCAGAAATGGA+TGG - chr4_1:82014804-82014823 Msa0577680:intron 35.0%
TTCAAATGCCAGAAATGGAT+GGG - chr4_1:82014805-82014824 Msa0577680:intron 35.0%
ATCTACATAGAAGACACACA+AGG - chr4_1:82015037-82015056 Msa0577680:CDS 35.0%
!!! TTCAACAGTTTTGAAGCTAC+AGG - chr4_1:82015168-82015187 Msa0577680:CDS 35.0%
TAAAGTTGTTCGGCTTCAAA+TGG + chr4_1:82015336-82015355 None:intergenic 35.0%
TTGAAGCCGAACAACTTTAT+CGG - chr4_1:82015337-82015356 Msa0577680:five_prime_UTR 35.0%
AACTTCCCGATAAAGTTGTT+CGG + chr4_1:82015346-82015365 None:intergenic 35.0%
AACTTTATCGGGAAGTTTCT+CGG - chr4_1:82015349-82015368 Msa0577680:five_prime_UTR 35.0%
!! CTGTTTCTTTTCAAGATGAC+AGG + chr4_1:82015380-82015399 None:intergenic 35.0%
TATCTCATCGTCTCACAAAA+GGG - chr4_1:82015433-82015452 Msa0577680:five_prime_UTR 35.0%
AAAGGGAGGAAATATTGAAC+TGG - chr4_1:82015450-82015469 Msa0577680:five_prime_UTR 35.0%
CATGTAAAGTTGTGTAGTCT+AGG - chr4_1:82015659-82015678 Msa0577680:five_prime_UTR 35.0%
AAGTAGGTTCTTGGAAACAA+AGG - chr4_1:82015736-82015755 Msa0577680:five_prime_UTR 35.0%
!! TTCTTAAAAGTGCCGGAATT+TGG - chr4_1:82015828-82015847 Msa0577680:five_prime_UTR 35.0%
TCTAGCATGAACTAACTGCA+GGG + chr4_1:82009610-82009629 None:intergenic 40.0%
AAAGATGTGGCTGAAATGGT+GGG - chr4_1:82010055-82010074 Msa0577680:CDS 40.0%
!! TGGGAGAAGATTTTAGGGAA+TGG - chr4_1:82010074-82010093 Msa0577680:CDS 40.0%
! GGAGAAAGCTTTTGTTGACA+TGG - chr4_1:82010159-82010178 Msa0577680:intron 40.0%
! GCTTTTGTTGACATGGGTAT+TGG - chr4_1:82010166-82010185 Msa0577680:intron 40.0%
GTTTACAAGCTACTGAGAAG+AGG - chr4_1:82010228-82010247 Msa0577680:intron 40.0%
TTGCTAGCATGTGTGATGAA+AGG - chr4_1:82010261-82010280 Msa0577680:intron 40.0%
TGCTAGCATGTGTGATGAAA+GGG - chr4_1:82010262-82010281 Msa0577680:intron 40.0%
TCTGCAAGAGTCGAATTGAT+CGG + chr4_1:82010484-82010503 None:intergenic 40.0%
TCTTACAACTCTGTCACACA+TGG - chr4_1:82010526-82010545 Msa0577680:CDS 40.0%
TGTCGTGTACGATGTCATAT+TGG - chr4_1:82010601-82010620 Msa0577680:CDS 40.0%
! CAGAAAGAACAGCTTTTGAG+AGG - chr4_1:82010714-82010733 Msa0577680:CDS 40.0%
CGATTATGCTGTAGAGGAAT+TGG - chr4_1:82010862-82010881 Msa0577680:CDS 40.0%
AGCATATTCTTCCTGAAGAG+GGG + chr4_1:82010894-82010913 None:intergenic 40.0%
GAGCATATTCTTCCTGAAGA+GGG + chr4_1:82010895-82010914 None:intergenic 40.0%
! GATATGCTTTCTGGAAAGGT+AGG - chr4_1:82010959-82010978 Msa0577680:CDS 40.0%
! AACGGATTCAGATTATCACC+AGG + chr4_1:82011116-82011135 None:intergenic 40.0%
AAGCTTGAGCAAAGAGTGAA+CGG + chr4_1:82011134-82011153 None:intergenic 40.0%
TCACTCTTTGCTCAAGCTTT+AGG - chr4_1:82011135-82011154 Msa0577680:CDS 40.0%
CACTCTTTGCTCAAGCTTTA+GGG - chr4_1:82011136-82011155 Msa0577680:CDS 40.0%
TGTCTCTACAGTTGTACACA+AGG + chr4_1:82011195-82011214 None:intergenic 40.0%
TTGCACGCAACACATTATCA+CGG + chr4_1:82011310-82011329 None:intergenic 40.0%
TCTTGTAGACGGCAAATGTA+AGG + chr4_1:82011400-82011419 None:intergenic 40.0%
GTTGCTTGGATCCTTTCATT+TGG + chr4_1:82011446-82011465 None:intergenic 40.0%
GAAAGGATCCAAGCAACTAA+TGG - chr4_1:82011449-82011468 Msa0577680:CDS 40.0%
ATGCATACCCATTAGTTGCT+TGG + chr4_1:82011460-82011479 None:intergenic 40.0%
! TATAGTTTAGCTTACGCCTC+CGG - chr4_1:82011535-82011554 Msa0577680:CDS 40.0%
CAGAACTTTAGATAAACCGG+AGG + chr4_1:82011554-82011573 None:intergenic 40.0%
! GAATGGAGTGTTTAGTTGCT+TGG + chr4_1:82011591-82011610 None:intergenic 40.0%
CAAACAGTATCACGATTCAC+AGG + chr4_1:82011702-82011721 None:intergenic 40.0%
CTGTGAATCGTGATACTGTT+TGG - chr4_1:82011700-82011719 Msa0577680:intron 40.0%
ATACTGTTTGGGAGAGCTTA+TGG - chr4_1:82011712-82011731 Msa0577680:intron 40.0%
TACTGTTTGGGAGAGCTTAT+GGG - chr4_1:82011713-82011732 Msa0577680:intron 40.0%
CTCTTCCCTTGTGATAGTTA+AGG - chr4_1:82011979-82011998 Msa0577680:intron 40.0%
TTGCTAAACAGGTATCTTGG+TGG - chr4_1:82012120-82012139 Msa0577680:intron 40.0%
TGCTAAACAGGTATCTTGGT+GGG - chr4_1:82012121-82012140 Msa0577680:intron 40.0%
ACTCATCCAATTGCCATGTA+TGG - chr4_1:82012237-82012256 Msa0577680:CDS 40.0%
TTTGAGCCATACATGGCAAT+TGG + chr4_1:82012246-82012265 None:intergenic 40.0%
CATGTCAGCACTCTTAACTT+TGG - chr4_1:82012288-82012307 Msa0577680:CDS 40.0%
! TTAACTTTGGTGACCCTTTC+AGG - chr4_1:82012301-82012320 Msa0577680:CDS 40.0%
GCATCTCATGTTTCCTGAAA+GGG + chr4_1:82012317-82012336 None:intergenic 40.0%
TGCATCTCATGTTTCCTGAA+AGG + chr4_1:82012318-82012337 None:intergenic 40.0%
CTGAACATTAAGAAGGACAG+AGG + chr4_1:82012366-82012385 None:intergenic 40.0%
TTTAAGTCCGATTCTTACCC+AGG - chr4_1:82012411-82012430 Msa0577680:intron 40.0%
GTTTGAACCTGGGTAAGAAT+CGG + chr4_1:82012421-82012440 None:intergenic 40.0%
AATATTGCAGCACATGGCAA+AGG + chr4_1:82012452-82012471 None:intergenic 40.0%
!! CTTGTTATTGCTCTCCTTGT+TGG - chr4_1:82012488-82012507 Msa0577680:intron 40.0%
! TTTTGCAATTCGATTCACGG+TGG + chr4_1:82012528-82012547 None:intergenic 40.0%
GATGGAGCTTAAAAAACGTG+CGG - chr4_1:82012571-82012590 Msa0577680:intron 40.0%
TCTGATTTCATGGGAAACAG+TGG + chr4_1:82012712-82012731 None:intergenic 40.0%
! CATCGGTGTTCTGATTTCAT+GGG + chr4_1:82012721-82012740 None:intergenic 40.0%
! TCATCGGTGTTCTGATTTCA+TGG + chr4_1:82012722-82012741 None:intergenic 40.0%
GAAATCAGAACACCGATGAA+TGG - chr4_1:82012723-82012742 Msa0577680:CDS 40.0%
! ACACCGATGAATGGTGTTTT+AGG - chr4_1:82012732-82012751 Msa0577680:CDS 40.0%
GGTGAGTTCTCTAATGTCTA+TGG - chr4_1:82012753-82012772 Msa0577680:CDS 40.0%
AGGGATGATGCATATGCTTA+TGG - chr4_1:82012853-82012872 Msa0577680:intron 40.0%
ATTTGGTAAGCTAGAGCTTG+AGG - chr4_1:82012982-82013001 Msa0577680:CDS 40.0%
TCTGATAAGTCCCAAGGAAA+AGG - chr4_1:82013055-82013074 Msa0577680:CDS 40.0%
GGATCACCTATTAGCAGTTT+AGG + chr4_1:82013226-82013245 None:intergenic 40.0%
AAACTGCTAATAGGTGATCC+TGG - chr4_1:82013226-82013245 Msa0577680:intron 40.0%
ATTATTTGCCGAAACCTTCC+AGG + chr4_1:82013247-82013266 None:intergenic 40.0%
TCTCATGGGCAACTCAATTA+AGG - chr4_1:82013273-82013292 Msa0577680:intron 40.0%
! CATGTCACTTAGGCAATGTT+TGG - chr4_1:82013316-82013335 Msa0577680:intron 40.0%
GACATGTCCATAAACTCTCT+AGG + chr4_1:82013477-82013496 None:intergenic 40.0%
! GTTTTGCAGTTCACAGACAA+AGG - chr4_1:82013685-82013704 Msa0577680:intron 40.0%
TGTGACTATCCATCTTGTTG+AGG - chr4_1:82013717-82013736 Msa0577680:intron 40.0%
GAACAATCTCCTCAACAAGA+TGG + chr4_1:82013729-82013748 None:intergenic 40.0%
! TCAGGCAACTTTTCACAACA+GGG + chr4_1:82013804-82013823 None:intergenic 40.0%
TTGTGAAAAGTTGCCTGAGT+TGG - chr4_1:82013806-82013825 Msa0577680:CDS 40.0%
! AAAAGTTGCCTGAGTTGGAA+AGG - chr4_1:82013811-82013830 Msa0577680:CDS 40.0%
TTCAAGGCTTTCAGTCAAGA+TGG - chr4_1:82013835-82013854 Msa0577680:CDS 40.0%
ATGGAAGAGAAAGAACCAAG+TGG + chr4_1:82013862-82013881 None:intergenic 40.0%
TCTGTTGAAGATACAGGTGA+CGG - chr4_1:82013910-82013929 Msa0577680:CDS 40.0%
ATGAGAGGTTGAGATTCTCT+AGG + chr4_1:82013940-82013959 None:intergenic 40.0%
ATGAATGGAGTGAAGATGAG+AGG + chr4_1:82013955-82013974 None:intergenic 40.0%
TTCACTCCATTCATGCAAGT+AGG - chr4_1:82013961-82013980 Msa0577680:intron 40.0%
! TACCAGTTCCTCCATGTTTT+CGG + chr4_1:82013999-82014018 None:intergenic 40.0%
AAACATGGAGGAACTGGTAT+TGG - chr4_1:82014000-82014019 Msa0577680:intron 40.0%
AGCATTAGCAAGTGTTTGGT+TGG - chr4_1:82014027-82014046 Msa0577680:intron 40.0%
ATCCAATTTCGCCATTCATG+AGG + chr4_1:82014053-82014072 None:intergenic 40.0%
ATTAGAACTGAGGAGTCCAT+TGG + chr4_1:82014127-82014146 None:intergenic 40.0%
CCCTCAAATTCTGAATATGC+AGG + chr4_1:82014186-82014205 None:intergenic 40.0%
ACGGTTTCAGATTTGAACCA+AGG - chr4_1:82014291-82014310 Msa0577680:intron 40.0%
CGGTTTCAGATTTGAACCAA+GGG - chr4_1:82014292-82014311 Msa0577680:intron 40.0%
GGTTTCAGATTTGAACCAAG+GGG - chr4_1:82014293-82014312 Msa0577680:intron 40.0%
GGGTGTCAACCATAAACAAA+GGG - chr4_1:82014313-82014332 Msa0577680:CDS 40.0%
AGGGAATGCAGTTATCAACA+TGG - chr4_1:82014332-82014351 Msa0577680:CDS 40.0%
TCTTGATTGAGCAGGAAGTT+TGG - chr4_1:82014355-82014374 Msa0577680:CDS 40.0%
CTATCATCACAAAACCACTC+AGG - chr4_1:82014520-82014539 Msa0577680:CDS 40.0%
TACAGCGAGAGATGAATGTT+AGG - chr4_1:82014565-82014584 Msa0577680:intron 40.0%
TCTCTTAGCCATCTTCTTGT+TGG - chr4_1:82014624-82014643 Msa0577680:intron 40.0%
CTCTTAGCCATCTTCTTGTT+GGG - chr4_1:82014625-82014644 Msa0577680:intron 40.0%
! TTTTCCTCCCAACAAGAAGA+TGG + chr4_1:82014635-82014654 None:intergenic 40.0%
!! GCTGGTGCTTTGAAAAAGTA+TGG - chr4_1:82014696-82014715 Msa0577680:intron 40.0%
! GAAAAAGTATGGAGCAGATG+TGG - chr4_1:82014707-82014726 Msa0577680:intron 40.0%
ATTGCATACCCATCCATTTC+TGG + chr4_1:82014816-82014835 None:intergenic 40.0%
TACAGGTAGAATCAGAGAGA+TGG - chr4_1:82015185-82015204 Msa0577680:CDS 40.0%
TCTGCAGTCATCGCTAAAAT+CGG + chr4_1:82015252-82015271 None:intergenic 40.0%
GATGACTGCAGATGTAATTC+AGG - chr4_1:82015260-82015279 Msa0577680:five_prime_UTR 40.0%
CTACACATGAGAAATGCCTA+AGG - chr4_1:82015283-82015302 Msa0577680:five_prime_UTR 40.0%
TGAAGCCGAACAACTTTATC+GGG - chr4_1:82015338-82015357 Msa0577680:five_prime_UTR 40.0%
CTATCTCATCGTCTCACAAA+AGG - chr4_1:82015432-82015451 Msa0577680:five_prime_UTR 40.0%
! TGCTGTTTATGAAAGATCCC+TGG - chr4_1:82015514-82015533 Msa0577680:five_prime_UTR 40.0%
AGTAGGATCCAAGTTGTAGT+TGG - chr4_1:82015572-82015591 Msa0577680:five_prime_UTR 40.0%
! ACTGAGAGACTGACTTTACA+TGG + chr4_1:82015628-82015647 None:intergenic 40.0%
! CCTTGTGTTCTTAAAAGTGC+CGG - chr4_1:82015821-82015840 Msa0577680:five_prime_UTR 40.0%
CTCTAGCATGAACTAACTGC+AGG + chr4_1:82009611-82009630 None:intergenic 45.0%
CAAAGATGTGGCTGAAATGG+TGG - chr4_1:82010054-82010073 Msa0577680:CDS 45.0%
AGAGAGTGAAGAGAGAGTTG+TGG - chr4_1:82010138-82010157 Msa0577680:intron 45.0%
!! TGTTGACATGGGTATTGGGT+TGG - chr4_1:82010171-82010190 Msa0577680:intron 45.0%
GTTGGACTGTAGTGTCTTTG+TGG - chr4_1:82010189-82010208 Msa0577680:intron 45.0%
TGAAAGGGCTAGGATTGTTC+AGG - chr4_1:82010277-82010296 Msa0577680:intron 45.0%
AGTACCTGATCAATGGCTGA+GGG + chr4_1:82010377-82010396 None:intergenic 45.0%
AAGTACCTGATCAATGGCTG+AGG + chr4_1:82010378-82010397 None:intergenic 45.0%
CTGCAAGAGTCGAATTGATC+GGG + chr4_1:82010483-82010502 None:intergenic 45.0%
CAATTCGACTCTTGCAGATC+AGG - chr4_1:82010486-82010505 Msa0577680:CDS 45.0%
TTTGAGAGGCCTCTAACAAG+TGG - chr4_1:82010728-82010747 Msa0577680:CDS 45.0%
! TATGCCACACCACTTGTTAG+AGG + chr4_1:82010740-82010759 None:intergenic 45.0%
TATTCTTCCTGAAGAGGGGA+TGG + chr4_1:82010890-82010909 None:intergenic 45.0%
GGAGCATATTCTTCCTGAAG+AGG + chr4_1:82010896-82010915 None:intergenic 45.0%
GTGCAAGAGAATCAGGCAAA+GGG - chr4_1:82011324-82011343 Msa0577680:CDS 45.0%
TGCAAGAGAATCAGGCAAAG+GGG - chr4_1:82011325-82011344 Msa0577680:CDS 45.0%
GCTAAACAGGTATCTTGGTG+GGG - chr4_1:82012122-82012141 Msa0577680:intron 45.0%
GGAAACATGAGATGCATTGC+AGG - chr4_1:82012322-82012341 Msa0577680:CDS 45.0%
AGCAGATGTTGCAAAATCCC+AGG - chr4_1:82012598-82012617 Msa0577680:intron 45.0%
CAAGTCCGTGTAATTAGTGC+AGG + chr4_1:82012665-82012684 None:intergenic 45.0%
GGAATATGTCAGAACAGCAC+AGG - chr4_1:82012901-82012920 Msa0577680:intron 45.0%
! TACCTCGACTCCTTTTCCTT+GGG + chr4_1:82013068-82013087 None:intergenic 45.0%
! TTACCTCGACTCCTTTTCCT+TGG + chr4_1:82013069-82013088 None:intergenic 45.0%
TGCTAATAGGTGATCCTGGA+AGG - chr4_1:82013230-82013249 Msa0577680:intron 45.0%
TAGGTGATCCTGGAAGGTTT+CGG - chr4_1:82013236-82013255 Msa0577680:intron 45.0%
! CTCAGGCAACTTTTCACAAC+AGG + chr4_1:82013805-82013824 None:intergenic 45.0%
CCTTGAATCCTTTCCAACTC+AGG + chr4_1:82013822-82013841 None:intergenic 45.0%
! CCTGAGTTGGAAAGGATTCA+AGG - chr4_1:82013819-82013838 Msa0577680:CDS 45.0%
TTCAGTCAAGATGGACCACT+TGG - chr4_1:82013844-82013863 Msa0577680:CDS 45.0%
GACGAACCTACTTGCATGAA+TGG + chr4_1:82013970-82013989 None:intergenic 45.0%
! ACCAGTTCCTCCATGTTTTC+GGG + chr4_1:82013998-82014017 None:intergenic 45.0%
!! TGTTTGGTTGGCCTCATGAA+TGG - chr4_1:82014039-82014058 Msa0577680:intron 45.0%
TTTACTGCTGTCTTCGCCAA+TGG - chr4_1:82014108-82014127 Msa0577680:intron 45.0%
CAATATCACATCCAACGCCT+TGG - chr4_1:82014255-82014274 Msa0577680:intron 45.0%
CCTTGGCATTCACGTTGAAA+CGG - chr4_1:82014272-82014291 Msa0577680:intron 45.0%
TGTTTATGGTTGACACCCCT+TGG + chr4_1:82014311-82014330 None:intergenic 45.0%
! GGGGTGTCAACCATAAACAA+AGG - chr4_1:82014312-82014331 Msa0577680:CDS 45.0%
! CAACATGGTCTTGATTGAGC+AGG - chr4_1:82014347-82014366 Msa0577680:CDS 45.0%
AGCACAAGGAAAATCAGCCA+CGG - chr4_1:82014414-82014433 Msa0577680:CDS 45.0%
! ACAACTTTGGAGGAAAACCG+TGG + chr4_1:82014434-82014453 None:intergenic 45.0%
TTAGCCATCTTCTTGTTGGG+AGG - chr4_1:82014628-82014647 Msa0577680:intron 45.0%
! GATGTGGTTTGTGTTAGCAG+TGG - chr4_1:82014723-82014742 Msa0577680:intron 45.0%
AAACATGCGTCGAACTGATG+AGG + chr4_1:82014777-82014796 None:intergenic 45.0%
TCAGTTCGACGCATGTTTCA+TGG - chr4_1:82014779-82014798 Msa0577680:intron 45.0%
CATGAGAAATGCCTAAGGTG+TGG - chr4_1:82015288-82015307 Msa0577680:five_prime_UTR 45.0%
GAAATGCCTAAGGTGTGGAA+TGG - chr4_1:82015293-82015312 Msa0577680:five_prime_UTR 45.0%
! TGATAGGGAGTGTGCATAGT+AGG - chr4_1:82015555-82015574 Msa0577680:five_prime_UTR 45.0%
!! CCGGCACTTTTAAGAACACA+AGG + chr4_1:82015824-82015843 None:intergenic 45.0%
!! ATTTATTAAACAAATTAAAA+AGG + chr4_1:82012634-82012653 None:intergenic 5.0%
!!! TTTTAATTTGTTTAATAAAT+TGG - chr4_1:82012634-82012653 Msa0577680:intron 5.0%
GGACAGAGTCACAGAGACAA+TGG - chr4_1:82009380-82009399 Msa0577680:three_prime_UTR 50.0%
TCAAACCTTGAACACTCGCG+TGG - chr4_1:82009549-82009568 Msa0577680:three_prime_UTR 50.0%
! TTCCTATTGGCCCCTCCTTT+TGG - chr4_1:82009673-82009692 Msa0577680:three_prime_UTR 50.0%
TACCAAAAGGAGGGGCCAAT+AGG + chr4_1:82009678-82009697 None:intergenic 50.0%
GTAGCAGCTACCAAAAGGAG+GGG + chr4_1:82009686-82009705 None:intergenic 50.0%
GGTAGCAGCTACCAAAAGGA+GGG + chr4_1:82009687-82009706 None:intergenic 50.0%
AGGTAGCAGCTACCAAAAGG+AGG + chr4_1:82009688-82009707 None:intergenic 50.0%
GTCAGGTAGCAGCTACCAAA+AGG + chr4_1:82009691-82009710 None:intergenic 50.0%
GCATGTGTGATGAAAGGGCT+AGG - chr4_1:82010267-82010286 Msa0577680:intron 50.0%
TCTAGGCAAGGTTCGAAAGC+CGG - chr4_1:82010453-82010472 Msa0577680:CDS 50.0%
! GTCGAATTGATCGGGAGTAC+CGG + chr4_1:82010475-82010494 None:intergenic 50.0%
GTGTTGCGTGCAAGAGAATC+AGG - chr4_1:82011317-82011336 Msa0577680:CDS 50.0%
CGTGCAAGAGAATCAGGCAA+AGG - chr4_1:82011323-82011342 Msa0577680:CDS 50.0%
!!! GGGTTTTAACTGCACCCTTC+AGG - chr4_1:82011345-82011364 Msa0577680:CDS 50.0%
AAGCTGTCCTGGATAGCTCA+TGG + chr4_1:82011780-82011799 None:intergenic 50.0%
GGCGGTTTCTGTTTGAACCT+GGG + chr4_1:82012431-82012450 None:intergenic 50.0%
AGGCGGTTTCTGTTTGAACC+TGG + chr4_1:82012432-82012451 None:intergenic 50.0%
ATTGCAGCACATGGCAAAGG+CGG + chr4_1:82012449-82012468 None:intergenic 50.0%
GGAGCTTAAAAAACGTGCGG+AGG - chr4_1:82012574-82012593 Msa0577680:intron 50.0%
GTCAGAACAGCACAGGAAAG+TGG - chr4_1:82012908-82012927 Msa0577680:intron 50.0%
TCGTCGATCTCCCGAAAACA+TGG - chr4_1:82013985-82014004 Msa0577680:intron 50.0%
TCGATCTCCCGAAAACATGG+AGG - chr4_1:82013988-82014007 Msa0577680:intron 50.0%
TCCCGAAAACATGGAGGAAC+TGG - chr4_1:82013994-82014013 Msa0577680:intron 50.0%
GGCCTCATGAATGGCGAAAT+TGG - chr4_1:82014048-82014067 Msa0577680:intron 50.0%
CCGTTTCAACGTGAATGCCA+AGG + chr4_1:82014275-82014294 None:intergenic 50.0%
TGCCTAAGGTGTGGAATGGA+TGG - chr4_1:82015297-82015316 Msa0577680:five_prime_UTR 50.0%
GCCTAAGGTGTGGAATGGAT+GGG - chr4_1:82015298-82015317 Msa0577680:five_prime_UTR 50.0%
ACCCATCCATTCCACACCTT+AGG + chr4_1:82015302-82015321 None:intergenic 50.0%
CTCATCGTCTCACAAAAGGG+AGG - chr4_1:82015436-82015455 Msa0577680:five_prime_UTR 50.0%
CAGAACCACGCGAGTGTTCA+AGG + chr4_1:82009557-82009576 None:intergenic 55.0%
GAGTCCCTCAGCCATTGATC+AGG - chr4_1:82010370-82010389 Msa0577680:intron 55.0%
CGACACTGACACGTCAACAC+AGG + chr4_1:82010586-82010605 None:intergenic 55.0%
GAGGCCTCTAACAAGTGGTG+TGG - chr4_1:82010733-82010752 Msa0577680:CDS 55.0%
ATTGGAGCCATCCCCTCTTC+AGG - chr4_1:82010880-82010899 Msa0577680:CDS 55.0%
GTCCCAAGGAAAAGGAGTCG+AGG - chr4_1:82013063-82013082 Msa0577680:CDS 55.0%
CAACGTGAATGCCAAGGCGT+TGG + chr4_1:82014269-82014288 None:intergenic 55.0%
GTGAATCGTGCAGTAGCAGC+TGG - chr4_1:82014678-82014697 Msa0577680:intron 55.0%
CATGCGTCGAACTGATGAGG+TGG + chr4_1:82014774-82014793 None:intergenic 55.0%
GCAAGCATGCTTGCCCTGAG+TGG + chr4_1:82014537-82014556 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 82009345 82015930 82009345 ID=Msa0577680;Name=Msa0577680
chr4_1 mRNA 82009345 82015930 82009345 ID=Msa0577680-mRNA-1;Parent=Msa0577680;Name=Msa0577680-mRNA-1;_AED=0.09;_eAED=0.09;_QI=714|1|1|1|1|1|10|541|970
chr4_1 exon 82009345 82010099 82009345 ID=Msa0577680-mRNA-1:exon:29650;Parent=Msa0577680-mRNA-1
chr4_1 exon 82010449 82011581 82010449 ID=Msa0577680-mRNA-1:exon:29649;Parent=Msa0577680-mRNA-1
chr4_1 exon 82011981 82012079 82011981 ID=Msa0577680-mRNA-1:exon:29648;Parent=Msa0577680-mRNA-1
chr4_1 exon 82012191 82012420 82012191 ID=Msa0577680-mRNA-1:exon:29647;Parent=Msa0577680-mRNA-1
chr4_1 exon 82012522 82012573 82012522 ID=Msa0577680-mRNA-1:exon:29646;Parent=Msa0577680-mRNA-1
chr4_1 exon 82012656 82012842 82012656 ID=Msa0577680-mRNA-1:exon:29645;Parent=Msa0577680-mRNA-1
chr4_1 exon 82012932 82013144 82012932 ID=Msa0577680-mRNA-1:exon:29644;Parent=Msa0577680-mRNA-1
chr4_1 exon 82013804 82013973 82013804 ID=Msa0577680-mRNA-1:exon:29643;Parent=Msa0577680-mRNA-1
chr4_1 exon 82014299 82014580 82014299 ID=Msa0577680-mRNA-1:exon:29642;Parent=Msa0577680-mRNA-1
chr4_1 exon 82014884 82015930 82014884 ID=Msa0577680-mRNA-1:exon:29641;Parent=Msa0577680-mRNA-1
chr4_1 five_prime_UTR 82015217 82015930 82015217 ID=Msa0577680-mRNA-1:five_prime_utr;Parent=Msa0577680-mRNA-1
chr4_1 CDS 82014884 82015216 82014884 ID=Msa0577680-mRNA-1:cds;Parent=Msa0577680-mRNA-1
chr4_1 CDS 82014299 82014580 82014299 ID=Msa0577680-mRNA-1:cds;Parent=Msa0577680-mRNA-1
chr4_1 CDS 82013804 82013973 82013804 ID=Msa0577680-mRNA-1:cds;Parent=Msa0577680-mRNA-1
chr4_1 CDS 82012932 82013144 82012932 ID=Msa0577680-mRNA-1:cds;Parent=Msa0577680-mRNA-1
chr4_1 CDS 82012656 82012842 82012656 ID=Msa0577680-mRNA-1:cds;Parent=Msa0577680-mRNA-1
chr4_1 CDS 82012522 82012573 82012522 ID=Msa0577680-mRNA-1:cds;Parent=Msa0577680-mRNA-1
chr4_1 CDS 82012191 82012420 82012191 ID=Msa0577680-mRNA-1:cds;Parent=Msa0577680-mRNA-1
chr4_1 CDS 82011981 82012079 82011981 ID=Msa0577680-mRNA-1:cds;Parent=Msa0577680-mRNA-1
chr4_1 CDS 82010449 82011581 82010449 ID=Msa0577680-mRNA-1:cds;Parent=Msa0577680-mRNA-1
chr4_1 CDS 82009886 82010099 82009886 ID=Msa0577680-mRNA-1:cds;Parent=Msa0577680-mRNA-1
chr4_1 three_prime_UTR 82009345 82009885 82009345 ID=Msa0577680-mRNA-1:three_prime_utr;Parent=Msa0577680-mRNA-1
Gene Sequence

>Msa0577680

ATGTGGCTGAAATGGTGGGAGAAGATTTTAGGGAATGGTTACAAAATCAATCAACAGTACTATCAGTATATTGGGTCAAAGAGAGTGAAGAGAGAGTTGTGGAGAAAGCTTTTGTTGACATGGGTATTGGGTTGGACTGTAGTGTCTTTGTGGATCTTCTGCTTTATGAGTTTACAAGCTACTGAGAAGAGGAAAGAAACTCTTGCTAGCATGTGTGATGAAAGGGCTAGGATTGTTCAGGATCAGTTTAATGTTAGTATGAACCATATTCAAGCTATGTCTATTTTGATCTCAACTTTTCATCATGCTAAGAGTCCCTCAGCCATTGATCAGAGAACTTTTGCTAGCTACACAGAAAGAACAGCTTTTGAGAGGCCTCTAACAAGTGGTGTGGCATATGCTGTAAGAGTGCTTCATTATGAAAGGGAACAATTTGAGAAGCAACAAGGTTGGATTATTAAGAGAATGGATACTCTAGAGCAGAATCCAGTTCATAAGAACGATTATGCTGTAGAGGAATTGGAGCCATCCCCTCTTCAGGAAGAATATGCTCCTGTCATATTTGCACAAGATACAATTTCACATGTCATTTCTGTTGATATGCTTTCTGGAAAGGAAGACCGTGATAATGTGTTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCACCCTTCAGGCTTCTCAAATCAAATCGGTTAGGAGTTATCCTTACATTTGCCGTCTACAAGAGATATCTTCCATCAAATGCAACTCCAAATGAAAGGATCCAAGCAACTAATGGGTATCTTGGTGGGGTATTTGATGTTGAGTCATTAGTGGAGAAATTACTTGAGCAACTTGCTAGCAAGCAAAGTGTAATTGTTAATGTATATGACACTACAAATCATACTCATCCAATTGCCATGTATGGCTCAAATATATCAGGGGATGTGTTCAATCATGTCAGCACTCTTAACTTTGGTGACCCTTTCAGGAAACATGAGATGCATTGCAGGTTCAAACAGAAACCGCCTTTGCCATGTGCTGCAATATTAACTTCAATTGGCATTCTTGTTATTGCTCTCCTTGTTGGACATATTTTCTATGCCACCGTGAATCGAATTGCAAAAGTAGAAGATGATTACCATGAAATGATGGAGCTTAAAAAACGTGCGGAGGCAGCAGATGTTGCAAAATCCCAGTTTCTTGCCACTGTTTCCCATGAAATCAGAACACCGATGAATGGTGTTTTAGGGATGATGCATATGCTTATGGACACAGATTTAGATGTAACTCAACAGGAATATGTCAGAACAGCACAGGAAAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGATCAGGCAAAGATTGAATTTGGTAAGCTAGAGCTTGAGGCAGTGCTTTTTGACATACGTTCGATTTTGGATGATGTATTGTCACTATTTTCTGATAAGTCCCAAGGAAAAGGAGTCGAGTTGGCAGCTTATGTGTCAGATCAAGTTCCTAAACTGCTAATAGGTGATCCTGGAAGGTTTCGGCAAATAATTACTAATCTCATGGGCAACTCAATTAAGTTCACAGACAAAGGACACATTTTTGTGACTATCCATCTTGTTGAGGAGATTGTTCATTCTATAGAGGTTGACAATGAATCAAATCCAGAAAATACATTGAGTGGTTTCCCTGTTGTGAAAAGTTGCCTGAGTTGGAAAGGATTCAAGGCTTTCAGTCAAGATGGACCACTTGGTTCTTTCTCTTCCATCTCTAGTGATCTCATCAATTTGATTGTATCTGTTGAAGATACAGGTGACGGTATTCCTAGAGAATCTCAACCTCTCATCTTCACTCCATTCATGCAAGTAGGTTCGTCGATCTCCCGAAAACATGGAGGAACTGGTATTGGACTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGCGAAATTGGATTTGCAAGTGAACCAAAAACTGGTTCCACTTTTACTTTTACTGCTGTCTTCGCCAATGGACTCCTCAGTTCTAATGAGTGTAAAATACGGCAAATCAACGACCAAACAAAACCTGCATATTCAGAATTTGAGGGTATGAATGCATTGGTTATTGATCCAAGACCTATTAGAGCAAAAGTGTCTCAATATCACATCCAACGCCTTGGCATTCACGTTGAAACGGTTTCAGATTTGAACCAAGGGGTGTCAACCATAAACAAAGGGAATGCAGTTATCAACATGGTCTTGATTGAGCAGGAAGTTTGGTATAGAGATTCAAGCATGTCGTCTCATTTTTTCGATAGCACAAGGAAAATCAGCCACGGTTTTCCTCCAAAGTTGTTCATTCTTGTTAATTCTAGCAACTCTTCTAAAACTAGCAGTGTAACGTCAGATGTTGATAATCCTACTATCATCACAAAACCACTCAGGGCAAGCATGCTTGCTGCGTCACTACAGCGAGAGATGAATGTTAGGAACAAGAGAACTCTAAATAGGGACCTTCAAAATTTGTCTCTTAGCCATCTTCTTGTTGGGAGGAAAATTCTAATTGTTGATGATAATGGCGTGAATCGTGCAGTAGCAGCTGGTGCTTTGAAAAAGTATGGAGCAGATGTGGTTTGTGTTAGCAGTGGAAAAGATGCTATCTCATCGCTGAAGCCACCTCATCAGTTCGACGCATGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACAGGTAGAATCAGAGAGATGGAACAGAATGTAAACACAGAAGTATCTATAAACTGGCATGTGCCGATTTTAGCGATGACTGCAGATGTAATTCAGGCTACACATGAGAAATGCCTAAGGTGTGGAATGGATGGGTATGTTTCAAAACCATTTGAAGCCGAACAACTTTATCGGGAAGTTTCTCGGTTTTTCCTGTCATCTTGA
Protein sequence

>Msa0577680

MWLKWWEKILGNGYKINQQYYQYIGSKRVKRELWRKLLLTWVLGWTVVSLWIFCFMSLQATEKRKETLASMCDERARIVQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFASYTERTAFERPLTSGVAYAVRVLHYEREQFEKQQGWIIKRMDTLEQNPVHKNDYAVEELEPSPLQEEYAPVIFAQDTISHVISVDMLSGKEDRDNVLRARESGKGVLTAPFRLLKSNRLGVILTFAVYKRYLPSNATPNERIQATNGYLGGVFDVESLVEKLLEQLASKQSVIVNVYDTTNHTHPIAMYGSNISGDVFNHVSTLNFGDPFRKHEMHCRFKQKPPLPCAAILTSIGILVIALLVGHIFYATVNRIAKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRSILDDVLSLFSDKSQGKGVELAAYVSDQVPKLLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEIVHSIEVDNESNPENTLSGFPVVKSCLSWKGFKAFSQDGPLGSFSSISSDLINLIVSVEDTGDGIPRESQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFASEPKTGSTFTFTAVFANGLLSSNECKIRQINDQTKPAYSEFEGMNALVIDPRPIRAKVSQYHIQRLGIHVETVSDLNQGVSTINKGNAVINMVLIEQEVWYRDSSMSSHFFDSTRKISHGFPPKLFILVNSSNSSKTSSVTSDVDNPTIITKPLRASMLAASLQREMNVRNKRTLNRDLQNLSLSHLLVGRKILIVDDNGVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATGRIREMEQNVNTEVSINWHVPILAMTADVIQATHEKCLRCGMDGYVSKPFEAEQLYREVSRFFLSS*