AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577770 MtrunA17_Chr8g0377481 98.247 970 17 0 1 970 1 970 0.0 1984
Msa0577770 MtrunA17_Chr3g0122391 80.306 980 182 5 1 970 49 1027 0.0 1612
Msa0577770 MtrunA17_Chr5g0447641 53.683 991 397 14 18 967 243 1212 0.0 1035
Msa0577770 MtrunA17_Chr8g0392301 52.563 995 395 18 21 967 29 994 0.0 976
Msa0577770 MtrunA17_Chr2g0311191 44.118 306 71 4 203 508 29 234 5.85e-65 218
Msa0577770 MtrunA17_Chr3g0136601 36.957 276 163 4 395 661 373 646 3.98e-40 160
Msa0577770 MtrunA17_Chr5g0405701 33.750 320 188 6 345 657 462 764 2.14e-38 155
Msa0577770 MtrunA17_Chr5g0405701 34.722 144 62 2 838 955 1047 1184 7.66e-18 89.4
Msa0577770 MtrunA17_Chr1g0150511 33.882 304 163 6 395 661 379 681 3.56e-38 154
Msa0577770 MtrunA17_Chr1g0150511 33.333 129 67 3 843 953 870 997 4.20e-12 70.5
Msa0577770 MtrunA17_Chr8g0371601 34.603 315 192 5 345 657 424 726 7.45e-37 150
Msa0577770 MtrunA17_Chr8g0371601 36.296 135 63 3 838 955 1026 1154 7.33e-18 89.4
Msa0577770 MtrunA17_Chr4g0013831 28.650 363 222 6 383 742 335 663 1.45e-34 142
Msa0577770 MtrunA17_Chr4g0013831 32.624 141 78 5 820 959 600 724 6.36e-12 69.7
Msa0577770 MtrunA17_Chr7g0269631 30.357 280 162 4 383 661 335 582 3.29e-28 121
Msa0577770 MtrunA17_Chr1g0194741 30.605 281 163 8 381 642 384 651 1.73e-25 113
Msa0577770 MtrunA17_Chr1g0197591 26.000 350 208 10 344 666 328 653 2.20e-24 110
Msa0577770 MtrunA17_Chr1g0197591 37.692 130 64 4 841 963 926 1045 2.34e-15 81.3
Msa0577770 MtrunA17_Chr7g0274831 33.562 146 84 4 826 970 628 761 1.63e-17 87.8
Msa0577770 MtrunA17_Chr7g0274831 21.542 441 290 11 371 804 354 745 1.45e-14 78.2
Msa0577770 MtrunA17_Chr1g0190021 33.835 133 78 3 840 970 634 758 8.86e-16 82.4
Msa0577770 MtrunA17_Chr1g0190021 25.595 168 125 0 371 538 350 517 2.61e-12 70.9
Msa0577770 MtrunA17_Chr1g0186431 32.331 133 81 3 837 968 631 755 7.27e-15 79.3
Msa0577770 MtrunA17_Chr1g0186431 26.174 149 110 0 371 519 344 492 5.85e-11 66.6
Msa0577770 MtrunA17_Chr1g0194731 32.609 138 69 6 838 964 325 449 1.34e-13 74.3
Msa0577770 MtrunA17_Chr1g0168161 31.579 133 81 3 837 967 633 757 1.92e-13 74.7
Msa0577770 MtrunA17_Chr8g0343551 41.463 82 36 3 882 963 13 82 1.47e-12 64.3
Msa0577770 MtrunA17_Chr8g0364781 32.759 116 70 3 844 959 15 122 4.95e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577770 AT1G27320.1 68.432 982 285 7 1 969 61 1030 0.0 1348
Msa0577770 AT5G35750.1 56.830 959 374 10 34 967 230 1173 0.0 1066
Msa0577770 AT2G01830.5 53.086 972 397 14 31 967 113 1060 0.0 990
Msa0577770 AT2G01830.2 53.086 972 397 14 31 967 124 1071 0.0 989
Msa0577770 AT2G01830.1 53.086 972 397 14 31 967 101 1048 0.0 988
Msa0577770 AT2G01830.4 53.086 972 397 14 31 967 101 1048 0.0 988
Msa0577770 AT2G01830.6 53.086 972 397 14 31 967 101 1048 0.0 988
Msa0577770 AT2G01830.3 53.086 972 397 14 31 967 101 1048 0.0 988
Msa0577770 AT5G10720.1 35.252 278 145 3 395 668 369 615 6.41e-42 166
Msa0577770 AT5G10720.1 32.414 145 78 3 842 968 779 921 9.87e-14 76.3
Msa0577770 AT1G66340.1 29.108 426 255 8 383 804 334 716 2.20e-38 154
Msa0577770 AT1G66340.1 29.167 120 78 2 840 959 609 721 3.94e-11 67.8
Msa0577770 AT2G17820.1 30.233 387 244 8 345 728 451 814 1.24e-36 150
Msa0577770 AT2G17820.1 33.333 150 62 3 838 955 1041 1184 3.51e-15 81.3
Msa0577770 AT2G40940.1 32.143 280 157 4 383 661 334 581 9.75e-31 129
Msa0577770 AT2G47430.1 31.126 302 179 8 380 666 383 670 5.40e-29 125
Msa0577770 AT2G47430.1 37.594 133 59 5 836 952 981 1105 9.25e-14 76.6
Msa0577770 AT3G04580.2 34.286 140 81 3 828 965 629 759 1.78e-15 81.6
Msa0577770 AT3G04580.2 21.711 456 292 14 379 817 354 761 1.18e-12 72.8
Msa0577770 AT3G04580.1 34.286 140 81 3 828 965 629 759 1.78e-15 81.6
Msa0577770 AT3G04580.1 21.711 456 292 14 379 817 354 761 1.18e-12 72.8
Msa0577770 AT3G23150.1 35.252 139 74 3 837 970 642 769 6.58e-15 79.7

Find 237 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACTTTGGTGACCCTTTC+AGG 0.130440 4_1:-82083700 Msa0577770:CDS
TTTCTTAAATTTAATCTATT+TGG 0.136484 4_1:-82086162 Msa0577770:five_prime_UTR
ATTGCATACCCATCCATTTC+TGG 0.150261 4_1:+82081188 None:intergenic
AACTGCATTCCCTTTGTTTA+TGG 0.188548 4_1:+82081679 None:intergenic
ATTTCTGTTGATATGCTTTC+TGG 0.198728 4_1:-82085051 Msa0577770:CDS
GATCAGGCAAAGATTGAATT+TGG 0.209090 4_1:-82083036 Msa0577770:CDS
TTCTTAAAAGTGCCGGAATT+TGG 0.238320 4_1:-82080173 Msa0577770:three_prime_UTR
ACCAGTTAGTAGTAGAAAAT+TGG 0.238353 4_1:-82086050 Msa0577770:five_prime_UTR
ATCAATTTCTGTTGAGAGTT+AGG 0.255426 4_1:-82086272 Msa0577770:five_prime_UTR
GTCACTTATAAATGAGGTTT+TGG 0.260867 4_1:-82083058 Msa0577770:CDS
ATTCTAATTGTTGATGATAA+TGG 0.264746 4_1:-82081347 Msa0577770:CDS
TAAAATGATTTGAGTCAAAA+AGG 0.265333 4_1:+82080517 None:intergenic
AGGGATGATGCATATGCTTA+TGG 0.272594 4_1:-82083148 Msa0577770:CDS
GGCCTCATGAATGGCGAAAT+TGG 0.276640 4_1:-82081953 Msa0577770:CDS
GTTACTTATAGGTATGTATT+AGG 0.278145 4_1:-82080310 Msa0577770:three_prime_UTR
CTACTGATTGGCCAAATAAA+TGG 0.280511 4_1:+82080078 None:intergenic
GGAACAAGAGAACTCTAAAT+AGG 0.280932 4_1:-82081415 Msa0577770:CDS
CAACAGTACTATCAGTATAT+TGG 0.283486 4_1:-82085891 Msa0577770:CDS
TTCCTATTGGCCCCTCCTTT+TGG 0.287596 4_1:-82086328 Msa0577770:five_prime_UTR
GAAAAGAAACAGAAAAGTTT+TGG 0.287824 4_1:-82080613 Msa0577770:three_prime_UTR
TCTCATGGGCAACTCAATTA+AGG 0.288486 4_1:-82082728 Msa0577770:intron
CTTGTTATTGCTCTCCTTGT+TGG 0.291084 4_1:-82083513 Msa0577770:CDS
ATGTATGGCTCAAATATATC+AGG 0.301140 4_1:-82083749 Msa0577770:CDS
GGATCACCTATTAGCAGTTT+AGG 0.310227 4_1:+82082778 None:intergenic
GGTATGTAATAGTTACTTAT+AGG 0.312340 4_1:-82080321 Msa0577770:three_prime_UTR
TCTCTTAGCCATCTTCTTGT+TGG 0.315553 4_1:-82081377 Msa0577770:CDS
CTCTTAGCCATCTTCTTGTT+GGG 0.318317 4_1:-82081376 Msa0577770:CDS
CGATTATGCTGTAGAGGAAT+TGG 0.327475 4_1:-82085139 Msa0577770:CDS
TCAGTTCGACGCATGTTTCA+TGG 0.329522 4_1:-82081222 Msa0577770:CDS
GTTGCTTGAATCCTTTCATT+TGG 0.333595 4_1:+82084558 None:intergenic
TCATCGGTGTTCTGATTTCA+TGG 0.354261 4_1:+82083282 None:intergenic
ATAAAGGAATGATAAGATTC+TGG 0.357594 4_1:+82086247 None:intergenic
AACAGTACTATCAGTATATT+GGG 0.359905 4_1:-82085890 Msa0577770:CDS
ATTGGAGCCATCCCCTCTTC+AGG 0.361853 4_1:-82085121 Msa0577770:CDS
GGTTGATTGAAGTGAAATAA+AGG 0.362623 4_1:-82080289 Msa0577770:three_prime_UTR
GGATATTCAAATGCCAGAAA+TGG 0.363538 4_1:-82081201 Msa0577770:CDS
AATAAAGGAAAGTAGGTTCT+TGG 0.363674 4_1:-82080274 Msa0577770:three_prime_UTR
CCTGAGTTGGAAAGGATTCA+AGG 0.368177 4_1:-82082182 Msa0577770:CDS
AAATAGACATAGCTTGAATA+TGG 0.369912 4_1:+82085679 None:intergenic
TATGCCACACCGCTTGTTAG+AGG 0.371023 4_1:+82085264 None:intergenic
GCATAATCGTTCTTATGAAC+TGG 0.371534 4_1:+82085153 None:intergenic
CAAGTTCCTAAACTGCTAAT+AGG 0.375479 4_1:-82082784 Msa0577770:CDS
GAAAGGATTCAAGCAACTAA+TGG 0.381749 4_1:-82084552 Msa0577770:CDS
ACCCTTATAAAATAAAATAA+AGG 0.390649 4_1:+82086231 None:intergenic
AACTTTATCGGGAAGTTTCT+CGG 0.392394 4_1:-82080652 Msa0577770:CDS
ACTTTACATGGAAGAATCAA+TGG 0.396819 4_1:+82080388 None:intergenic
ACACAGAAGTATCTATAAAC+TGG 0.396943 4_1:-82080781 Msa0577770:CDS
TCATTTGGAGTTGCATTTGA+TGG 0.397149 4_1:+82084573 None:intergenic
ATTATTTGCCGAAACCTTCC+AGG 0.397385 4_1:+82082757 None:intergenic
TTTGAGCCATACATGGCAAT+TGG 0.398441 4_1:+82083758 None:intergenic
GTGTTGCGTGCAAGAGAATC+AGG 0.399039 4_1:-82084684 Msa0577770:CDS
TTGAAGCCGAACAACTTTAT+CGG 0.400783 4_1:-82080664 Msa0577770:CDS
GGAAACATGAGATGCATTGC+AGG 0.401426 4_1:-82083679 Msa0577770:intron
CAGAACCACGCGAGTGTTCA+AGG 0.407862 4_1:+82086447 None:intergenic
GATGACTGCAGATGTAATTC+AGG 0.412226 4_1:-82080741 Msa0577770:CDS
AATATTTGAAAGCCAAATTC+CGG 0.412259 4_1:+82080161 None:intergenic
TCTTGATTGAGCAGGAAGTT+TGG 0.412734 4_1:-82081646 Msa0577770:CDS
GCTGCAATATTAACTTCAAT+TGG 0.416348 4_1:-82083540 Msa0577770:CDS
GAACAAGAGAACTCTAAATA+GGG 0.416973 4_1:-82081414 Msa0577770:CDS
TGTTTATGGTTGACACCCCT+TGG 0.417467 4_1:+82081693 None:intergenic
CTATCTCATCGTCTCACAAA+AGG 0.420162 4_1:-82080569 Msa0577770:three_prime_UTR
ATTGTATCTGTTGAAGATAC+AGG 0.422648 4_1:-82082097 Msa0577770:CDS
GTTGGACTGTAGTGTCTTTG+TGG 0.426681 4_1:-82085812 Msa0577770:CDS
ACTAAGCATTAGCAAGTGTT+TGG 0.428271 4_1:-82081978 Msa0577770:CDS
TTAACAAGAATGAACAACTT+TGG 0.432009 4_1:+82081557 None:intergenic
AAAGGATTCAAGCAACTAAT+GGG 0.437942 4_1:-82084551 Msa0577770:intron
TGAAAGGGCTAGGATTGTTC+AGG 0.438583 4_1:-82085724 Msa0577770:CDS
ATTTGATGTTGAGTCATTAG+TGG 0.439863 4_1:-82083855 Msa0577770:CDS
CTATTTGTTATTATGTTGTC+AGG 0.440816 4_1:+82086296 None:intergenic
TCCCGAAAACATGGAGGAAC+TGG 0.442693 4_1:-82082007 Msa0577770:CDS
GCAAATAATTACTAATCTCA+TGG 0.446857 4_1:-82082743 Msa0577770:CDS
TCTGATAAGTCCCAAGGAAA+AGG 0.449413 4_1:-82082946 Msa0577770:CDS
ATATTGCTAAACAGGTATCT+TGG 0.449675 4_1:-82083884 Msa0577770:intron
TGATAGGGAGTGTGCATAGT+AGG 0.450644 4_1:-82080446 Msa0577770:three_prime_UTR
AAACATGGAGGAACTGGTAT+TGG 0.453248 4_1:-82082001 Msa0577770:CDS
TTTACTGCTGTCTTCGCCAA+TGG 0.460268 4_1:-82081893 Msa0577770:CDS
AACTTCCCGATAAAGTTGTT+CGG 0.460960 4_1:+82080658 None:intergenic
CATGTCAGCACTCTTAACTT+TGG 0.464215 4_1:-82083713 Msa0577770:CDS
TCTGCAGTCATCGCTAAAAT+CGG 0.464289 4_1:+82080752 None:intergenic
GGAGATTGTTCATTCTATAG+AGG 0.466518 4_1:-82082263 Msa0577770:CDS
GCATCTCATGTTTCCTGAAA+GGG 0.466982 4_1:+82083687 None:intergenic
AGATTTAGATGTAACTCAAC+AGG 0.467158 4_1:-82083121 Msa0577770:CDS
CATCGGTGTTCTGATTTCAT+GGG 0.467349 4_1:+82083283 None:intergenic
TTAAATTTAATCTATTTGGT+TGG 0.468106 4_1:-82086158 Msa0577770:five_prime_UTR
TGAAGCCGAACAACTTTATC+GGG 0.468450 4_1:-82080663 Msa0577770:CDS
ATACAAAGATGTGGCTGAAA+TGG 0.468585 4_1:-82085950 Msa0577770:exon
TGTTGTAAGTATTCATTAAG+TGG 0.468911 4_1:-82085981 Msa0577770:five_prime_UTR
ACTCATCCAATTGCCATGTA+TGG 0.469930 4_1:-82083764 Msa0577770:CDS
AGGTTGGATTATTAAGAGAA+TGG 0.472979 4_1:-82085193 Msa0577770:CDS
TAAAGTTGTTCGGCTTCAAA+TGG 0.473516 4_1:+82080668 None:intergenic
GAAAATAAGTACCTGATCAA+TGG 0.475341 4_1:+82085620 None:intergenic
TACCAAAAGGAGGGGCCAAT+AGG 0.475422 4_1:+82086326 None:intergenic
CATGTAAAGTTGTGTAGTCT+AGG 0.478649 4_1:-82080342 Msa0577770:three_prime_UTR
TCTTGTAGACGGCAAATGTA+AGG 0.478724 4_1:+82084604 None:intergenic
GACAGCAGTAAAAGTAAAAG+TGG 0.479310 4_1:+82081904 None:intergenic
CTTTACATGGAAGAATCAAT+GGG 0.480380 4_1:+82080389 None:intergenic
CCTTGGCATTCACGTTGAAA+CGG 0.483428 4_1:-82081729 Msa0577770:CDS
TATAATATATACATGGTTGA+TGG 0.485646 4_1:+82080240 None:intergenic
TAAGAGTGCTTCATTATGAA+AGG 0.486345 4_1:-82085236 Msa0577770:CDS
TGCTAGCATGTGTGATGAAA+GGG 0.486559 4_1:-82085739 Msa0577770:CDS
GACGAACCTACTTGCATGAA+TGG 0.486640 4_1:+82082034 None:intergenic
ACCTGCATATTCAGAATTTG+AGG 0.486963 4_1:-82081819 Msa0577770:CDS
CCCTCAAATTCTGAATATGC+AGG 0.488168 4_1:+82081818 None:intergenic
TCTAGTGTCACTTATAAATG+AGG 0.488685 4_1:-82083064 Msa0577770:CDS
CCTTGAATCCTTTCCAACTC+AGG 0.489334 4_1:+82082182 None:intergenic
CTTCTCAAATCAAATCGGTT+AGG 0.491529 4_1:-82084633 Msa0577770:CDS
AAACTGCTAATAGGTGATCC+TGG 0.491656 4_1:-82082775 Msa0577770:CDS
GAGTCCCTCAGCCATTGATC+AGG 0.494009 4_1:-82085631 Msa0577770:intron
TCAGGCTTCTCAAATCAAAT+CGG 0.494173 4_1:-82084638 Msa0577770:CDS
TGTTGACATGGGTATTGGGT+TGG 0.494780 4_1:-82085830 Msa0577770:CDS
TGTTGATATGCTTTCTGGAA+AGG 0.498415 4_1:-82085046 Msa0577770:intron
AGAGAGTGAAGAGAGAGTTG+TGG 0.498961 4_1:-82085863 Msa0577770:CDS
AGCATTAGCAAGTGTTTGGT+TGG 0.499734 4_1:-82081974 Msa0577770:CDS
GAAGTGAAATAAAGGAAAGT+AGG 0.500007 4_1:-82080281 Msa0577770:three_prime_UTR
TTCAAGGCTTTCAGTCAAGA+TGG 0.501177 4_1:-82082166 Msa0577770:CDS
CCTTGTGTTCTTAAAAGTGC+CGG 0.502001 4_1:-82080180 Msa0577770:three_prime_UTR
TTCAGTCAAGATGGACCACT+TGG 0.502714 4_1:-82082157 Msa0577770:CDS
TGCTAAACAGGTATCTTGGT+GGG 0.506352 4_1:-82083880 Msa0577770:intron
TACAGCGAGAGATGAATGTT+AGG 0.506665 4_1:-82081436 Msa0577770:CDS
AAGACAGCATCTTATTATCA+AGG 0.509239 4_1:-82086133 Msa0577770:five_prime_UTR
TCGTCGATCTCCCGAAAACA+TGG 0.509308 4_1:-82082016 Msa0577770:CDS
AAAGGGAGGAAATATTGAAC+TGG 0.511995 4_1:-82080551 Msa0577770:three_prime_UTR
TGTTTGGTTGGCCTCATGAA+TGG 0.512361 4_1:-82081962 Msa0577770:CDS
TGCTGTTTATGAAAGATCCC+TGG 0.513895 4_1:-82080487 Msa0577770:three_prime_UTR
TGCCTAAGGTGTGGAATGGA+TGG 0.514612 4_1:-82080704 Msa0577770:CDS
GTTCTAATGAGTGTAAAATA+CGG 0.515138 4_1:-82081862 Msa0577770:CDS
TATCTCATCGTCTCACAAAA+GGG 0.516880 4_1:-82080568 Msa0577770:three_prime_UTR
ACTGAGAGACTGACTTTACA+TGG 0.518038 4_1:+82080376 None:intergenic
ATTTGAGGGTATGAATGCAT+TGG 0.519831 4_1:-82081804 Msa0577770:CDS
CAACGTGAATGCCAAGGCGT+TGG 0.521697 4_1:+82081735 None:intergenic
CAACATGGTCTTGATTGAGC+AGG 0.522436 4_1:-82081654 Msa0577770:CDS
AATCCAGAAAATACATTGAG+TGG 0.523791 4_1:-82082226 Msa0577770:CDS
TGCATCTCATGTTTCCTGAA+AGG 0.524248 4_1:+82083686 None:intergenic
GTGCAAGAGAATCAGGCAAA+GGG 0.525841 4_1:-82084677 Msa0577770:CDS
GTCAGGTAGCAGCTACCAAA+AGG 0.526621 4_1:+82086313 None:intergenic
CGGTTTCAGATTTGAACCAA+GGG 0.529721 4_1:-82081709 Msa0577770:CDS
TAGGTGATCCTGGAAGGTTT+CGG 0.530999 4_1:-82082765 Msa0577770:CDS
CTCTAGCATGAACTAACTGC+AGG 0.531152 4_1:+82086393 None:intergenic
GAAATCAGAACACCGATGAA+TGG 0.536195 4_1:-82083278 Msa0577770:CDS
TGATATATTTGAGCCATACA+TGG 0.537691 4_1:+82083751 None:intergenic
ATTCAAATGCCAGAAATGGA+TGG 0.537787 4_1:-82081197 Msa0577770:CDS
GTGAATCGTGCAGTAGCAGC+TGG 0.538402 4_1:-82081323 Msa0577770:CDS
GTCAGAACAGCACAGGAAAG+TGG 0.540070 4_1:-82083093 Msa0577770:CDS
AGAGAATTTGCAAAAGAGAG+AGG 0.541398 4_1:+82086559 None:intergenic
CAAATAATTACTAATCTCAT+GGG 0.541408 4_1:-82082742 Msa0577770:CDS
TTGTGAAAAGTTGCCTGAGT+TGG 0.542609 4_1:-82082195 Msa0577770:CDS
GCATGTGTGATGAAAGGGCT+AGG 0.544298 4_1:-82085734 Msa0577770:CDS
GAACAATCTCCTCAACAAGA+TGG 0.546858 4_1:+82082275 None:intergenic
AGATGATTACCATGAAATGA+TGG 0.547933 4_1:-82083448 Msa0577770:CDS
CCTGCATATTCAGAATTTGA+GGG 0.551039 4_1:-82081818 Msa0577770:CDS
TATAGTATAATTTATCTATG+TGG 0.552181 4_1:+82080122 None:intergenic
TGTGACTATCCATCTTGTTG+AGG 0.552354 4_1:-82082284 Msa0577770:CDS
AATTTGAGAAGCAACAAGGT+TGG 0.555193 4_1:-82085209 Msa0577770:CDS
GTATCTTGTGCAAATATGAC+AGG 0.555330 4_1:+82085087 None:intergenic
CAATATCACATCCAACGCCT+TGG 0.556712 4_1:-82081746 Msa0577770:CDS
ATTGATGAGATCACTAGAGA+TGG 0.556798 4_1:+82082123 None:intergenic
CAAAGATGTGGCTGAAATGG+TGG 0.559449 4_1:-82085947 Msa0577770:exon
AGTAGGATCCAAGTTGTAGT+TGG 0.559658 4_1:-82080429 Msa0577770:three_prime_UTR
GCAAGCATGCTTGCCCTGAG+TGG 0.560278 4_1:+82081467 None:intergenic
AAGAGTGCTTCATTATGAAA+GGG 0.560545 4_1:-82085235 Msa0577770:CDS
ATTTGATTTGAGAAGCCTGA+AGG 0.561335 4_1:+82084641 None:intergenic
TGCTAATAGGTGATCCTGGA+AGG 0.562191 4_1:-82082771 Msa0577770:CDS
CAAATGCAACTCCAAATGAA+AGG 0.563584 4_1:-82084569 Msa0577770:CDS
TTCAAATGCCAGAAATGGAT+GGG 0.564303 4_1:-82081196 Msa0577770:intron
TTGCTAGCATGTGTGATGAA+AGG 0.564904 4_1:-82085740 Msa0577770:CDS
GGGTGTCAACCATAAACAAA+GGG 0.565304 4_1:-82081688 Msa0577770:CDS
AAGTACCTGATCAATGGCTG+AGG 0.566544 4_1:+82085626 None:intergenic
AGCAGATGTTGCAAAATCCC+AGG 0.568472 4_1:-82083403 Msa0577770:intron
ACAAGAATGAACAACTTTGG+AGG 0.570727 4_1:+82081560 None:intergenic
TATTCTTCCTGAAGAGGGGA+TGG 0.575235 4_1:+82085114 None:intergenic
TTAGCCATCTTCTTGTTGGG+AGG 0.575871 4_1:-82081373 Msa0577770:CDS
GAGCATATTCTTCCTGAAGA+GGG 0.577257 4_1:+82085109 None:intergenic
ATGAGAGGTTGAGATTCTCT+AGG 0.586217 4_1:+82082064 None:intergenic
GGACAGAGTCACAGAGACAA+TGG 0.588828 4_1:-82086621 Msa0577770:five_prime_UTR
ATCCAATTTCGCCATTCATG+AGG 0.589404 4_1:+82081951 None:intergenic
TGTATGGCTCAAATATATCA+GGG 0.591616 4_1:-82083748 Msa0577770:CDS
TTGCTAAACAGGTATCTTGG+TGG 0.592307 4_1:-82083881 Msa0577770:intron
GGAGCATATTCTTCCTGAAG+AGG 0.594545 4_1:+82085108 None:intergenic
TTTGATTTGAGAAGCCTGAA+GGG 0.594834 4_1:+82084642 None:intergenic
ATTAGAACTGAGGAGTCCAT+TGG 0.595386 4_1:+82081877 None:intergenic
CTATCATCACAAAACCACTC+AGG 0.595668 4_1:-82081481 Msa0577770:CDS
AATATTGCAGCACATGGCAA+AGG 0.595803 4_1:+82083552 None:intergenic
TGAGTCATATAATATATACA+TGG 0.596965 4_1:+82080233 None:intergenic
TAAGAACGATTATGCTGTAG+AGG 0.600889 4_1:-82085145 Msa0577770:CDS
ACGGTTTCAGATTTGAACCA+AGG 0.601766 4_1:-82081710 Msa0577770:CDS
CGTGCAAGAGAATCAGGCAA+AGG 0.602570 4_1:-82084678 Msa0577770:CDS
TCACCTAAAACACCATTCAT+CGG 0.602655 4_1:+82083266 None:intergenic
AAGTAGGTTCTTGGAAACAA+AGG 0.608113 4_1:-82080265 Msa0577770:three_prime_UTR
AAAAGTTGCCTGAGTTGGAA+AGG 0.608555 4_1:-82082190 Msa0577770:CDS
TACAGGTAGAATCAGAGAGA+TGG 0.608677 4_1:-82080816 Msa0577770:CDS
AGGTAGCAGCTACCAAAAGG+AGG 0.609218 4_1:+82086316 None:intergenic
TTCACTCCATTCATGCAAGT+AGG 0.609373 4_1:-82082040 Msa0577770:CDS
ATTTGGTAAGCTAGAGCTTG+AGG 0.609575 4_1:-82083019 Msa0577770:CDS
GGAATATGTCAGAACAGCAC+AGG 0.609824 4_1:-82083100 Msa0577770:CDS
GTTTACAAGCTACTGAGAAG+AGG 0.609832 4_1:-82085773 Msa0577770:CDS
CATGAGAAATGCCTAAGGTG+TGG 0.612289 4_1:-82080713 Msa0577770:CDS
ACTATAGTATAGTGTAAGAG+TGG 0.612413 4_1:-82080105 Msa0577770:three_prime_UTR
GGTAGCAGCTACCAAAAGGA+GGG 0.612615 4_1:+82086317 None:intergenic
TATCATCACAAAACCACTCA+GGG 0.614790 4_1:-82081480 Msa0577770:CDS
ATTGCAGCACATGGCAAAGG+CGG 0.615431 4_1:+82083555 None:intergenic
GGGGTGTCAACCATAAACAA+AGG 0.619294 4_1:-82081689 Msa0577770:CDS
CATAGAAAATATGTCCAACA+AGG 0.621926 4_1:+82083499 None:intergenic
GCTAAACAGGTATCTTGGTG+GGG 0.627851 4_1:-82083879 Msa0577770:intron
CATGCGTCGAACTGATGAGG+TGG 0.627952 4_1:+82081230 None:intergenic
CCGTTTCAACGTGAATGCCA+AGG 0.630331 4_1:+82081729 None:intergenic
TGGAAGATATCTCTTGTAGA+CGG 0.637440 4_1:+82084593 None:intergenic
GAAATGCCTAAGGTGTGGAA+TGG 0.638335 4_1:-82080708 Msa0577770:CDS
CTACACATGAGAAATGCCTA+AGG 0.639949 4_1:-82080718 Msa0577770:CDS
GAACAATTTGAGAAGCAACA+AGG 0.640709 4_1:-82085213 Msa0577770:CDS
AGTACCTGATCAATGGCTGA+GGG 0.641644 4_1:+82085627 None:intergenic
TTTGAGAGGCCTCTAACAAG+CGG 0.641837 4_1:-82085273 Msa0577770:CDS
AGCATATTCTTCCTGAAGAG+GGG 0.643515 4_1:+82085110 None:intergenic
GTAGCAGCTACCAAAAGGAG+GGG 0.646610 4_1:+82086318 None:intergenic
GAAGTTAATATTGCAGCACA+TGG 0.648248 4_1:+82083546 None:intergenic
GTCCCAAGGAAAAGGAGTCG+AGG 0.651906 4_1:-82082938 Msa0577770:intron
TCTGTTGAAGATACAGGTGA+CGG 0.654876 4_1:-82082091 Msa0577770:CDS
GAGTCACATATACAAAGATG+TGG 0.657158 4_1:-82085959 Msa0577770:exon
CTCATCGTCTCACAAAAGGG+AGG 0.657380 4_1:-82080565 Msa0577770:three_prime_UTR
GCCTAAGGTGTGGAATGGAT+GGG 0.659789 4_1:-82080703 Msa0577770:CDS
TCTGATTTCATGGGAAACAG+TGG 0.660492 4_1:+82083292 None:intergenic
GATGTGGTTTGTGTTAGCAG+TGG 0.662109 4_1:-82081278 Msa0577770:CDS
ACCCATCCATTCCACACCTT+AGG 0.666090 4_1:+82080702 None:intergenic
TCTAGCATGAACTAACTGCA+GGG 0.666189 4_1:+82086394 None:intergenic
TTGCACGCAACACATTATCA+CGG 0.668088 4_1:+82084694 None:intergenic
AGCACAAGGAAAATCAGCCA+CGG 0.673243 4_1:-82081587 Msa0577770:CDS
AAACATGCGTCGAACTGATG+AGG 0.675854 4_1:+82081227 None:intergenic
AAAGATGTGGCTGAAATGGT+GGG 0.675883 4_1:-82085946 Msa0577770:exon
TGCAAGAGAATCAGGCAAAG+GGG 0.689158 4_1:-82084676 Msa0577770:CDS
TCGATCTCCCGAAAACATGG+AGG 0.692524 4_1:-82082013 Msa0577770:CDS
GTATGGCTCAAATATATCAG+GGG 0.693592 4_1:-82083747 Msa0577770:CDS
TCAAACCTTGAACACTCGCG+TGG 0.695853 4_1:-82086452 Msa0577770:five_prime_UTR
GGTTTCAGATTTGAACCAAG+GGG 0.702437 4_1:-82081708 Msa0577770:CDS
AGGGAATGCAGTTATCAACA+TGG 0.702500 4_1:-82081669 Msa0577770:CDS
ATGGAAGAGAAAGAACCAAG+TGG 0.711725 4_1:+82082142 None:intergenic
ATGAATGGAGTGAAGATGAG+AGG 0.715966 4_1:+82082049 None:intergenic
GAGGCCTCTAACAAGCGGTG+TGG 0.719379 4_1:-82085268 Msa0577770:CDS
ACAACTTTGGAGGAAAACCG+TGG 0.762101 4_1:+82081570 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCCTTTATTTTATTTTATA+AGG - chr4_1:82080516-82080535 Msa0577770:three_prime_UTR 10.0%
!!! TCCTTTATTTTATTTTATAA+GGG - chr4_1:82080517-82080536 Msa0577770:three_prime_UTR 10.0%
!! TTTCTTAAATTTAATCTATT+TGG - chr4_1:82080587-82080606 Msa0577770:three_prime_UTR 10.0%
!!! CTTTATTTTATATTTTGTAA+TGG + chr4_1:82084158-82084177 None:intergenic 10.0%
!!! ATATAATATATTTTCTCAAC+TGG - chr4_1:82080098-82080117 Msa0577770:three_prime_UTR 15.0%
!! ACCCTTATAAAATAAAATAA+AGG + chr4_1:82080521-82080540 None:intergenic 15.0%
!! TTAAATTTAATCTATTTGGT+TGG - chr4_1:82080591-82080610 Msa0577770:three_prime_UTR 15.0%
!! AAGAAAAAGAGAAATAATTA+AGG + chr4_1:82080648-82080667 None:intergenic 15.0%
!! TAAAATCTTAATTGTTTGAT+TGG - chr4_1:82081391-82081410 Msa0577770:CDS 15.0%
!! AAAATCTTAATTGTTTGATT+GGG - chr4_1:82081392-82081411 Msa0577770:CDS 15.0%
!!! GTTTCTTGTTAAATTTTTTA+AGG - chr4_1:82081742-82081761 Msa0577770:CDS 15.0%
!!! TTATCTTTTGTTATAGAAAT+AGG - chr4_1:82082593-82082612 Msa0577770:intron 15.0%
!!! GTAATATATTTTTCATTTCT+TGG - chr4_1:82083833-82083852 Msa0577770:CDS 15.0%
!!! AACTATAAATCATCAAATTT+TGG + chr4_1:82085604-82085623 None:intergenic 15.0%
!!! AAATTTGATGATTTATAGTT+TGG - chr4_1:82085604-82085623 Msa0577770:intron 15.0%
!! TACTTAACAGTTTATATAAA+AGG - chr4_1:82085715-82085734 Msa0577770:CDS 15.0%
!!! ATTGATAATTACATAAATTG+TGG + chr4_1:82085843-82085862 None:intergenic 15.0%
!! TATAGTATAATTTATCTATG+TGG + chr4_1:82086630-82086649 None:intergenic 15.0%
!!! TCAATAGTTCATGTAATTTT+TGG - chr4_1:82082785-82082804 Msa0577770:CDS 20.0%
!! GCAATATACAAGAAATTAAA+AGG + chr4_1:82082852-82082871 None:intergenic 20.0%
!! CAAACAATTAAATCATGAAA+AGG + chr4_1:82083914-82083933 None:intergenic 20.0%
!!! CTTTTCATGATTTAATTGTT+TGG - chr4_1:82083912-82083931 Msa0577770:intron 20.0%
!! CAAATAATTACTAATCTCAT+GGG - chr4_1:82084007-82084026 Msa0577770:intron 20.0%
!!! ATTCTAATTGTTGATGATAA+TGG - chr4_1:82085402-82085421 Msa0577770:intron 20.0%
!! AAATTTCCACATAAAAAATG+TGG - chr4_1:82085638-82085657 Msa0577770:CDS 20.0%
!! TAAAATGATTTGAGTCAAAA+AGG + chr4_1:82086235-82086254 None:intergenic 20.0%
!! AAAAACAATATTCTAAACCA+GGG + chr4_1:82086282-82086301 None:intergenic 20.0%
!!! TAGAATATTGTTTTTGTGAT+AGG - chr4_1:82086287-82086306 Msa0577770:five_prime_UTR 20.0%
!!! AGAATATTGTTTTTGTGATA+GGG - chr4_1:82086288-82086307 Msa0577770:five_prime_UTR 20.0%
!! TATAATATATACATGGTTGA+TGG + chr4_1:82086512-82086531 None:intergenic 20.0%
!! TGAGTCATATAATATATACA+TGG + chr4_1:82086519-82086538 None:intergenic 20.0%
!!! CTATTTGTTATTATGTTGTC+AGG + chr4_1:82080456-82080475 None:intergenic 25.0%
! ATAAAGGAATGATAAGATTC+TGG + chr4_1:82080505-82080524 None:intergenic 25.0%
!!! CACAACATTTTTTAGTGATT+AGG - chr4_1:82080745-82080764 Msa0577770:CDS 25.0%
! TGTTGTAAGTATTCATTAAG+TGG - chr4_1:82080768-82080787 Msa0577770:CDS 25.0%
! AACAGTACTATCAGTATATT+GGG - chr4_1:82080859-82080878 Msa0577770:intron 25.0%
! AAATAGACATAGCTTGAATA+TGG + chr4_1:82081073-82081092 None:intergenic 25.0%
! TAGAACAATCTTTGATCAAA+GGG + chr4_1:82081185-82081204 None:intergenic 25.0%
! CTATGGTTTAAATATCCATT+AGG + chr4_1:82081795-82081814 None:intergenic 25.0%
! CAGATGATTTATCTATTCTA+TGG + chr4_1:82081812-82081831 None:intergenic 25.0%
! ATGAACAAAGAACAAACTAA+TGG + chr4_1:82082260-82082279 None:intergenic 25.0%
! CTTACATTATGGTATAGTTT+GGG + chr4_1:82082687-82082706 None:intergenic 25.0%
! TCTTACATTATGGTATAGTT+TGG + chr4_1:82082688-82082707 None:intergenic 25.0%
! TTTCTTGTATATTGCTAAAC+AGG - chr4_1:82082857-82082876 Msa0577770:intron 25.0%
! CAAGAAACTGCAATTATAAT+TGG + chr4_1:82083437-82083456 None:intergenic 25.0%
!! TGTCTGATTTTCAACTATTT+AGG - chr4_1:82083536-82083555 Msa0577770:CDS 25.0%
! TAGAACAAAGTTATGGTTTA+GGG + chr4_1:82083569-82083588 None:intergenic 25.0%
! ATAGAACAAAGTTATGGTTT+AGG + chr4_1:82083570-82083589 None:intergenic 25.0%
! TGCATTATAGAACAAAGTTA+TGG + chr4_1:82083576-82083595 None:intergenic 25.0%
!! TTGTTCTATAATGCATTTTC+AGG - chr4_1:82083581-82083600 Msa0577770:intron 25.0%
!! TGTTCTATAATGCATTTTCA+GGG - chr4_1:82083582-82083601 Msa0577770:intron 25.0%
! AAAATTTCACGATGATCAAA+GGG + chr4_1:82083861-82083880 None:intergenic 25.0%
! GCAAATAATTACTAATCTCA+TGG - chr4_1:82084006-82084025 Msa0577770:intron 25.0%
! GTTCTAATGAGTGTAAAATA+CGG - chr4_1:82084887-82084906 Msa0577770:intron 25.0%
! TTAACAAGAATGAACAACTT+TGG + chr4_1:82085195-82085214 None:intergenic 25.0%
!! GAAAAGAAACAGAAAAGTTT+TGG - chr4_1:82086136-82086155 Msa0577770:five_prime_UTR 25.0%
! CAAAAACAATATTCTAAACC+AGG + chr4_1:82086283-82086302 None:intergenic 25.0%
! GGTATGTAATAGTTACTTAT+AGG - chr4_1:82086428-82086447 Msa0577770:five_prime_UTR 25.0%
! GTTACTTATAGGTATGTATT+AGG - chr4_1:82086439-82086458 Msa0577770:five_prime_UTR 25.0%
! AATATTTGAAAGCCAAATTC+CGG + chr4_1:82086591-82086610 None:intergenic 25.0%
! ATTTTCTCAACTGGACATTT+TGG - chr4_1:82080107-82080126 Msa0577770:three_prime_UTR 30.0%
!!! GGTTCTGTTGTTCTTATTTT+TGG - chr4_1:82080318-82080337 Msa0577770:three_prime_UTR 30.0%
! ATCTTTTGTAGCTTTCCTAT+TGG - chr4_1:82080408-82080427 Msa0577770:three_prime_UTR 30.0%
ATCAATTTCTGTTGAGAGTT+AGG - chr4_1:82080477-82080496 Msa0577770:three_prime_UTR 30.0%
AAGACAGCATCTTATTATCA+AGG - chr4_1:82080616-82080635 Msa0577770:exon 30.0%
ACCAGTTAGTAGTAGAAAAT+TGG - chr4_1:82080699-82080718 Msa0577770:CDS 30.0%
! ACCAATTTTCTACTACTAAC+TGG + chr4_1:82080703-82080722 None:intergenic 30.0%
CAACAGTACTATCAGTATAT+TGG - chr4_1:82080858-82080877 Msa0577770:intron 30.0%
GAAAATAAGTACCTGATCAA+TGG + chr4_1:82081132-82081151 None:intergenic 30.0%
CTAGAACAATCTTTGATCAA+AGG + chr4_1:82081186-82081205 None:intergenic 30.0%
CTTTGATCAAAGATTGTTCT+AGG - chr4_1:82081184-82081203 Msa0577770:intron 30.0%
!! TAAGAGTGCTTCATTATGAA+AGG - chr4_1:82081513-82081532 Msa0577770:CDS 30.0%
!! AAGAGTGCTTCATTATGAAA+GGG - chr4_1:82081514-82081533 Msa0577770:CDS 30.0%
AGGTTGGATTATTAAGAGAA+TGG - chr4_1:82081556-82081575 Msa0577770:CDS 30.0%
ATTTCTGTTGATATGCTTTC+TGG - chr4_1:82081698-82081717 Msa0577770:CDS 30.0%
TACAATAGACTTAAATGTCC+TGG - chr4_1:82081843-82081862 Msa0577770:CDS 30.0%
ATATTCACTTGTTCATCAAC+AGG - chr4_1:82082028-82082047 Msa0577770:CDS 30.0%
AAAGGATTCAAGCAACTAAT+GGG - chr4_1:82082198-82082217 Msa0577770:CDS 30.0%
! TTTTTCCCATCAAATGTGAA+TGG + chr4_1:82082356-82082375 None:intergenic 30.0%
ACGAACAGTTGAACATAATT+AGG - chr4_1:82082379-82082398 Msa0577770:intron 30.0%
!!! CTATTTTTTATAAGCTGTCC+TGG + chr4_1:82082539-82082558 None:intergenic 30.0%
TGTTCACTCTTCTTACATTA+TGG + chr4_1:82082698-82082717 None:intergenic 30.0%
GAACTATTGAATTTCAGAGT+AGG + chr4_1:82082775-82082794 None:intergenic 30.0%
ATATTGCTAAACAGGTATCT+TGG - chr4_1:82082865-82082884 Msa0577770:intron 30.0%
ATTTGATGTTGAGTCATTAG+TGG - chr4_1:82082894-82082913 Msa0577770:intron 30.0%
TGATATATTTGAGCCATACA+TGG + chr4_1:82083001-82083020 None:intergenic 30.0%
ATGTATGGCTCAAATATATC+AGG - chr4_1:82083000-82083019 Msa0577770:CDS 30.0%
TGTATGGCTCAAATATATCA+GGG - chr4_1:82083001-82083020 Msa0577770:CDS 30.0%
AACTATGCTGAACATTAAGA+AGG + chr4_1:82083121-82083140 None:intergenic 30.0%
GCTGCAATATTAACTTCAAT+TGG - chr4_1:82083209-82083228 Msa0577770:intron 30.0%
CATAGAAAATATGTCCAACA+AGG + chr4_1:82083253-82083272 None:intergenic 30.0%
! TACTTTTGCAATTCGATTCA+CGG + chr4_1:82083279-82083298 None:intergenic 30.0%
AGATGATTACCATGAAATGA+TGG - chr4_1:82083301-82083320 Msa0577770:CDS 30.0%
! TTTTAAGCTCCATCATTTCA+TGG + chr4_1:82083313-82083332 None:intergenic 30.0%
AGATTTAGATGTAACTCAAC+AGG - chr4_1:82083628-82083647 Msa0577770:intron 30.0%
!! TCTAGTGTCACTTATAAATG+AGG - chr4_1:82083685-82083704 Msa0577770:CDS 30.0%
! GTCACTTATAAATGAGGTTT+TGG - chr4_1:82083691-82083710 Msa0577770:CDS 30.0%
!!! TATAAATGAGGTTTTGGATC+AGG - chr4_1:82083697-82083716 Msa0577770:CDS 30.0%
! TTTTGACATACGTTCGATTT+TGG - chr4_1:82083760-82083779 Msa0577770:CDS 30.0%
GAAAATTTCACGATGATCAA+AGG + chr4_1:82083862-82083881 None:intergenic 30.0%
AGTGACATGCATGATTAATA+AGG + chr4_1:82084053-82084072 None:intergenic 30.0%
! ATTAATCATGCATGTCACTT+AGG - chr4_1:82084054-82084073 Msa0577770:intron 30.0%
TACATAAGCACTTACATGAT+AGG + chr4_1:82084125-82084144 None:intergenic 30.0%
TGTGAACTGCAAAACAATTA+CGG + chr4_1:82084428-82084447 None:intergenic 30.0%
AATCCAGAAAATACATTGAG+TGG - chr4_1:82084523-82084542 Msa0577770:intron 30.0%
! AAACCACTCAATGTATTTTC+TGG + chr4_1:82084529-82084548 None:intergenic 30.0%
ATTGTATCTGTTGAAGATAC+AGG - chr4_1:82084652-82084671 Msa0577770:CDS 30.0%
! TTTTACACTCATTAGAACTG+AGG + chr4_1:82084885-82084904 None:intergenic 30.0%
GAACAAGAGAACTCTAAATA+GGG - chr4_1:82085335-82085354 Msa0577770:intron 30.0%
!!! TCTTCTCCACATTTTTTATG+TGG + chr4_1:82085647-82085666 None:intergenic 30.0%
! CATAAATTGTGGTATTTCTG+TGG + chr4_1:82085832-82085851 None:intergenic 30.0%
ATCATCATTGTGTTAGAAGT+TGG - chr4_1:82085875-82085894 Msa0577770:CDS 30.0%
!! ACACAGAAGTATCTATAAAC+TGG - chr4_1:82085968-82085987 Msa0577770:five_prime_UTR 30.0%
! TTTTACTACCAACTACAACT+TGG + chr4_1:82086331-82086350 None:intergenic 30.0%
CTTTACATGGAAGAATCAAT+GGG + chr4_1:82086363-82086382 None:intergenic 30.0%
ACTTTACATGGAAGAATCAA+TGG + chr4_1:82086364-82086383 None:intergenic 30.0%
GGTTGATTGAAGTGAAATAA+AGG - chr4_1:82086460-82086479 Msa0577770:five_prime_UTR 30.0%
GAAGTGAAATAAAGGAAAGT+AGG - chr4_1:82086468-82086487 Msa0577770:five_prime_UTR 30.0%
AATAAAGGAAAGTAGGTTCT+TGG - chr4_1:82086475-82086494 Msa0577770:five_prime_UTR 30.0%
ACTATAGTATAGTGTAAGAG+TGG - chr4_1:82086644-82086663 Msa0577770:five_prime_UTR 30.0%
AGAGAATTTGCAAAAGAGAG+AGG + chr4_1:82080193-82080212 None:intergenic 35.0%
GAGTCACATATACAAAGATG+TGG - chr4_1:82080790-82080809 Msa0577770:CDS 35.0%
ATACAAAGATGTGGCTGAAA+TGG - chr4_1:82080799-82080818 Msa0577770:CDS 35.0%
!! AAATGGTGGGAGAAGATTTT+AGG - chr4_1:82080816-82080835 Msa0577770:CDS 35.0%
!! AATGGTGGGAGAAGATTTTA+GGG - chr4_1:82080817-82080836 Msa0577770:CDS 35.0%
! GAGAAAGCTTTTGTTGACAT+GGG - chr4_1:82080908-82080927 Msa0577770:intron 35.0%
! CTTTTGTTGACATGGGTATT+GGG - chr4_1:82080915-82080934 Msa0577770:intron 35.0%
! ATCAAAGATTGTTCTAGGCA+AGG - chr4_1:82081189-82081208 Msa0577770:intron 35.0%
GAACAATTTGAGAAGCAACA+AGG - chr4_1:82081536-82081555 Msa0577770:CDS 35.0%
AATTTGAGAAGCAACAAGGT+TGG - chr4_1:82081540-82081559 Msa0577770:CDS 35.0%
GCATAATCGTTCTTATGAAC+TGG + chr4_1:82081599-82081618 None:intergenic 35.0%
TAAGAACGATTATGCTGTAG+AGG - chr4_1:82081604-82081623 Msa0577770:CDS 35.0%
GTATCTTGTGCAAATATGAC+AGG + chr4_1:82081665-82081684 None:intergenic 35.0%
! TGTTGATATGCTTTCTGGAA+AGG - chr4_1:82081703-82081722 Msa0577770:CDS 35.0%
ACTAGTTCAGCTGAAAACTT+TGG + chr4_1:82081769-82081788 None:intergenic 35.0%
AGCTGAACTAGTATACCTAA+TGG - chr4_1:82081777-82081796 Msa0577770:CDS 35.0%
ACAAATTCATCGAGTCAGAT+AGG - chr4_1:82081960-82081979 Msa0577770:CDS 35.0%
!! TTTGATTTGAGAAGCCTGAA+GGG + chr4_1:82082110-82082129 None:intergenic 35.0%
!! ATTTGATTTGAGAAGCCTGA+AGG + chr4_1:82082111-82082130 None:intergenic 35.0%
TCAGGCTTCTCAAATCAAAT+CGG - chr4_1:82082111-82082130 Msa0577770:CDS 35.0%
CTTCTCAAATCAAATCGGTT+AGG - chr4_1:82082116-82082135 Msa0577770:CDS 35.0%
TGGAAGATATCTCTTGTAGA+CGG + chr4_1:82082159-82082178 None:intergenic 35.0%
! TCATTTGGAGTTGCATTTGA+TGG + chr4_1:82082179-82082198 None:intergenic 35.0%
CAAATGCAACTCCAAATGAA+AGG - chr4_1:82082180-82082199 Msa0577770:CDS 35.0%
GTTGCTTGAATCCTTTCATT+TGG + chr4_1:82082194-82082213 None:intergenic 35.0%
GAAAGGATTCAAGCAACTAA+TGG - chr4_1:82082197-82082216 Msa0577770:CDS 35.0%
CAGAACTTTAGATAAACCAG+AGG + chr4_1:82082302-82082321 None:intergenic 35.0%
AACACTCCATTCACATTTGA+TGG - chr4_1:82082347-82082366 Msa0577770:intron 35.0%
ACACTCCATTCACATTTGAT+GGG - chr4_1:82082348-82082367 Msa0577770:intron 35.0%
GAACATAATTAGGCCATGTT+TGG - chr4_1:82082389-82082408 Msa0577770:intron 35.0%
CAAATACGTCAATCCAAACA+TGG + chr4_1:82082405-82082424 None:intergenic 35.0%
TGTGAATCGTGATACTGTTT+GGG - chr4_1:82082449-82082468 Msa0577770:intron 35.0%
TATGGGAACAACTTATGACA+TGG - chr4_1:82082478-82082497 Msa0577770:intron 35.0%
TTTATTTCCATGAGCTATCC+AGG - chr4_1:82082518-82082537 Msa0577770:intron 35.0%
CAAGACCTTAACTATCACAA+GGG + chr4_1:82082735-82082754 None:intergenic 35.0%
TCAAGACCTTAACTATCACA+AGG + chr4_1:82082736-82082755 None:intergenic 35.0%
GTATGGCTCAAATATATCAG+GGG - chr4_1:82083002-82083021 Msa0577770:CDS 35.0%
GAAGTTAATATTGCAGCACA+TGG + chr4_1:82083206-82083225 None:intergenic 35.0%
AAAAAGGTAGATGCATACCT+GGG + chr4_1:82083366-82083385 None:intergenic 35.0%
TAAAAAGGTAGATGCATACC+TGG + chr4_1:82083367-82083386 None:intergenic 35.0%
CTTAACCTGCACTAATTACA+CGG - chr4_1:82083405-82083424 Msa0577770:CDS 35.0%
TCACCTAAAACACCATTCAT+CGG + chr4_1:82083486-82083505 None:intergenic 35.0%
GATCAGGCAAAGATTGAATT+TGG - chr4_1:82083713-82083732 Msa0577770:CDS 35.0%
! CTATTTTCTGATAAGTCCCA+AGG - chr4_1:82083797-82083816 Msa0577770:CDS 35.0%
AATTGTTTGGCAATCACAGT+TGG - chr4_1:82083925-82083944 Msa0577770:intron 35.0%
CAAGTTCCTAAACTGCTAAT+AGG - chr4_1:82083965-82083984 Msa0577770:intron 35.0%
AAGCTATCCTAGAGAGTTTA+TGG - chr4_1:82084215-82084234 Msa0577770:intron 35.0%
TGAGTTTATCTGCTAGCATA+AGG + chr4_1:82084289-82084308 None:intergenic 35.0%
TCAAGTAAGTCAAACCAAAC+AGG - chr4_1:82084306-82084325 Msa0577770:intron 35.0%
TATCTGACTAAAAGCCTGTT+TGG + chr4_1:82084323-82084342 None:intergenic 35.0%
GGAGATTGTTCATTCTATAG+AGG - chr4_1:82084486-82084505 Msa0577770:intron 35.0%
ATTGATGAGATCACTAGAGA+TGG + chr4_1:82084629-82084648 None:intergenic 35.0%
ACTAAGCATTAGCAAGTGTT+TGG - chr4_1:82084771-82084790 Msa0577770:intron 35.0%
TTTGCAAGTGAACCAAAAAC+TGG - chr4_1:82084820-82084839 Msa0577770:intron 35.0%
! GTAAAAGTGGAACCAGTTTT+TGG + chr4_1:82084835-82084854 None:intergenic 35.0%
GACAGCAGTAAAAGTAAAAG+TGG + chr4_1:82084848-82084867 None:intergenic 35.0%
!!! CTGAATATGCAGGTTTTGTT+TGG + chr4_1:82084924-82084943 None:intergenic 35.0%
ACCTGCATATTCAGAATTTG+AGG - chr4_1:82084930-82084949 Msa0577770:intron 35.0%
CCTGCATATTCAGAATTTGA+GGG - chr4_1:82084931-82084950 Msa0577770:intron 35.0%
! ATTTGAGGGTATGAATGCAT+TGG - chr4_1:82084945-82084964 Msa0577770:intron 35.0%
! ACTTTTGCTCTAATAGGTCT+TGG + chr4_1:82084979-82084998 None:intergenic 35.0%
! TGAGACACTTTTGCTCTAAT+AGG + chr4_1:82084985-82085004 None:intergenic 35.0%
! AACTGCATTCCCTTTGTTTA+TGG + chr4_1:82085073-82085092 None:intergenic 35.0%
!!! CTCATTTTTTCGATAGCACA+AGG - chr4_1:82085148-82085167 Msa0577770:CDS 35.0%
ACAAGAATGAACAACTTTGG+AGG + chr4_1:82085192-82085211 None:intergenic 35.0%
!!! AGTGGTTTTGTGATGATAGT+AGG + chr4_1:82085267-82085286 None:intergenic 35.0%
TATCATCACAAAACCACTCA+GGG - chr4_1:82085269-82085288 Msa0577770:CDS 35.0%
GGAACAAGAGAACTCTAAAT+AGG - chr4_1:82085334-82085353 Msa0577770:intron 35.0%
! GGCTAAGAGACAAATTTTGA+AGG + chr4_1:82085362-82085381 None:intergenic 35.0%
GGATATTCAAATGCCAGAAA+TGG - chr4_1:82085548-82085567 Msa0577770:intron 35.0%
ATTCAAATGCCAGAAATGGA+TGG - chr4_1:82085552-82085571 Msa0577770:intron 35.0%
TTCAAATGCCAGAAATGGAT+GGG - chr4_1:82085553-82085572 Msa0577770:intron 35.0%
ATCTACATAGAAGACACACA+AGG - chr4_1:82085785-82085804 Msa0577770:CDS 35.0%
!!! TTCAACAGTTTTGAAGCTAC+AGG - chr4_1:82085916-82085935 Msa0577770:CDS 35.0%
TAAAGTTGTTCGGCTTCAAA+TGG + chr4_1:82086084-82086103 None:intergenic 35.0%
TTGAAGCCGAACAACTTTAT+CGG - chr4_1:82086085-82086104 Msa0577770:five_prime_UTR 35.0%
AACTTCCCGATAAAGTTGTT+CGG + chr4_1:82086094-82086113 None:intergenic 35.0%
AACTTTATCGGGAAGTTTCT+CGG - chr4_1:82086097-82086116 Msa0577770:five_prime_UTR 35.0%
!! CTGTTTCTTTTCAAGATGAC+AGG + chr4_1:82086128-82086147 None:intergenic 35.0%
TATCTCATCGTCTCACAAAA+GGG - chr4_1:82086181-82086200 Msa0577770:five_prime_UTR 35.0%
AAAGGGAGGAAATATTGAAC+TGG - chr4_1:82086198-82086217 Msa0577770:five_prime_UTR 35.0%
CATGTAAAGTTGTGTAGTCT+AGG - chr4_1:82086407-82086426 Msa0577770:five_prime_UTR 35.0%
AAGTAGGTTCTTGGAAACAA+AGG - chr4_1:82086484-82086503 Msa0577770:five_prime_UTR 35.0%
!! TTCTTAAAAGTGCCGGAATT+TGG - chr4_1:82086576-82086595 Msa0577770:five_prime_UTR 35.0%
TCTAGCATGAACTAACTGCA+GGG + chr4_1:82080358-82080377 None:intergenic 40.0%
AAAGATGTGGCTGAAATGGT+GGG - chr4_1:82080803-82080822 Msa0577770:CDS 40.0%
!! TGGGAGAAGATTTTAGGGAA+TGG - chr4_1:82080822-82080841 Msa0577770:CDS 40.0%
! GGAGAAAGCTTTTGTTGACA+TGG - chr4_1:82080907-82080926 Msa0577770:intron 40.0%
! GCTTTTGTTGACATGGGTAT+TGG - chr4_1:82080914-82080933 Msa0577770:intron 40.0%
GTTTACAAGCTACTGAGAAG+AGG - chr4_1:82080976-82080995 Msa0577770:intron 40.0%
TTGCTAGCATGTGTGATGAA+AGG - chr4_1:82081009-82081028 Msa0577770:intron 40.0%
TGCTAGCATGTGTGATGAAA+GGG - chr4_1:82081010-82081029 Msa0577770:intron 40.0%
TCTGCAAGAGTCGAATTGAT+CGG + chr4_1:82081232-82081251 None:intergenic 40.0%
TCTTACAACTCTGTCACACA+TGG - chr4_1:82081274-82081293 Msa0577770:CDS 40.0%
TGTCGTGTACGATGTCATAT+TGG - chr4_1:82081349-82081368 Msa0577770:CDS 40.0%
! CAGAAAGAACAGCTTTTGAG+AGG - chr4_1:82081462-82081481 Msa0577770:CDS 40.0%
CGATTATGCTGTAGAGGAAT+TGG - chr4_1:82081610-82081629 Msa0577770:CDS 40.0%
AGCATATTCTTCCTGAAGAG+GGG + chr4_1:82081642-82081661 None:intergenic 40.0%
GAGCATATTCTTCCTGAAGA+GGG + chr4_1:82081643-82081662 None:intergenic 40.0%
! GATATGCTTTCTGGAAAGGT+AGG - chr4_1:82081707-82081726 Msa0577770:CDS 40.0%
! AACGGATTCAGATTATCACC+AGG + chr4_1:82081864-82081883 None:intergenic 40.0%
AAGCTTGAGCAAAGAGTGAA+CGG + chr4_1:82081882-82081901 None:intergenic 40.0%
TCACTCTTTGCTCAAGCTTT+AGG - chr4_1:82081883-82081902 Msa0577770:CDS 40.0%
CACTCTTTGCTCAAGCTTTA+GGG - chr4_1:82081884-82081903 Msa0577770:CDS 40.0%
TGTCTCTACAGTTGTACACA+AGG + chr4_1:82081943-82081962 None:intergenic 40.0%
TCGAGTCAGATAGGACTATA+TGG - chr4_1:82081969-82081988 Msa0577770:CDS 40.0%
TTGCACGCAACACATTATCA+CGG + chr4_1:82082058-82082077 None:intergenic 40.0%
TCTTGTAGACGGCAAATGTA+AGG + chr4_1:82082148-82082167 None:intergenic 40.0%
! TATAGTTTAGCTTACGCCTC+TGG - chr4_1:82082283-82082302 Msa0577770:CDS 40.0%
! GAATGGAGTGTTTAGTTGCT+TGG + chr4_1:82082339-82082358 None:intergenic 40.0%
CAAACAGTATCACGATTCAC+AGG + chr4_1:82082450-82082469 None:intergenic 40.0%
CTGTGAATCGTGATACTGTT+TGG - chr4_1:82082448-82082467 Msa0577770:intron 40.0%
ATACTGTTTGGGAGAGCTTA+TGG - chr4_1:82082460-82082479 Msa0577770:intron 40.0%
TACTGTTTGGGAGAGCTTAT+GGG - chr4_1:82082461-82082480 Msa0577770:intron 40.0%
CTCTTCCCTTGTGATAGTTA+AGG - chr4_1:82082727-82082746 Msa0577770:intron 40.0%
TTGCTAAACAGGTATCTTGG+TGG - chr4_1:82082868-82082887 Msa0577770:intron 40.0%
TGCTAAACAGGTATCTTGGT+GGG - chr4_1:82082869-82082888 Msa0577770:intron 40.0%
ACTCATCCAATTGCCATGTA+TGG - chr4_1:82082985-82083004 Msa0577770:CDS 40.0%
TTTGAGCCATACATGGCAAT+TGG + chr4_1:82082994-82083013 None:intergenic 40.0%
CATGTCAGCACTCTTAACTT+TGG - chr4_1:82083036-82083055 Msa0577770:CDS 40.0%
! TTAACTTTGGTGACCCTTTC+AGG - chr4_1:82083049-82083068 Msa0577770:CDS 40.0%
GCATCTCATGTTTCCTGAAA+GGG + chr4_1:82083065-82083084 None:intergenic 40.0%
TGCATCTCATGTTTCCTGAA+AGG + chr4_1:82083066-82083085 None:intergenic 40.0%
CTGAACATTAAGAAGGACAG+AGG + chr4_1:82083114-82083133 None:intergenic 40.0%
TTTAAGTCCGATTCTTACCC+AGG - chr4_1:82083159-82083178 Msa0577770:intron 40.0%
GTTTGAACCTGGGTAAGAAT+CGG + chr4_1:82083169-82083188 None:intergenic 40.0%
AATATTGCAGCACATGGCAA+AGG + chr4_1:82083200-82083219 None:intergenic 40.0%
!! CTTGTTATTGCTCTCCTTGT+TGG - chr4_1:82083236-82083255 Msa0577770:intron 40.0%
! TTTTGCAATTCGATTCACGG+TGG + chr4_1:82083276-82083295 None:intergenic 40.0%
GATGGAGCTTAAAAAACGTG+CGG - chr4_1:82083319-82083338 Msa0577770:intron 40.0%
TCTGATTTCATGGGAAACAG+TGG + chr4_1:82083460-82083479 None:intergenic 40.0%
! CATCGGTGTTCTGATTTCAT+GGG + chr4_1:82083469-82083488 None:intergenic 40.0%
! TCATCGGTGTTCTGATTTCA+TGG + chr4_1:82083470-82083489 None:intergenic 40.0%
GAAATCAGAACACCGATGAA+TGG - chr4_1:82083471-82083490 Msa0577770:CDS 40.0%
! ACACCGATGAATGGTGTTTT+AGG - chr4_1:82083480-82083499 Msa0577770:CDS 40.0%
GGTGAGTTCTCTAATGTCTA+TGG - chr4_1:82083501-82083520 Msa0577770:CDS 40.0%
AGGGATGATGCATATGCTTA+TGG - chr4_1:82083601-82083620 Msa0577770:intron 40.0%
ATTTGGTAAGCTAGAGCTTG+AGG - chr4_1:82083730-82083749 Msa0577770:CDS 40.0%
TCTGATAAGTCCCAAGGAAA+AGG - chr4_1:82083803-82083822 Msa0577770:CDS 40.0%
GGATCACCTATTAGCAGTTT+AGG + chr4_1:82083974-82083993 None:intergenic 40.0%
AAACTGCTAATAGGTGATCC+TGG - chr4_1:82083974-82083993 Msa0577770:intron 40.0%
ATTATTTGCCGAAACCTTCC+AGG + chr4_1:82083995-82084014 None:intergenic 40.0%
TCTCATGGGCAACTCAATTA+AGG - chr4_1:82084021-82084040 Msa0577770:intron 40.0%
! CATGTCACTTAGGCAATGTT+TGG - chr4_1:82084064-82084083 Msa0577770:intron 40.0%
GACATGTCCATAAACTCTCT+AGG + chr4_1:82084225-82084244 None:intergenic 40.0%
! GTTTTGCAGTTCACAGACAA+AGG - chr4_1:82084433-82084452 Msa0577770:intron 40.0%
TGTGACTATCCATCTTGTTG+AGG - chr4_1:82084465-82084484 Msa0577770:intron 40.0%
GAACAATCTCCTCAACAAGA+TGG + chr4_1:82084477-82084496 None:intergenic 40.0%
! TCAGGCAACTTTTCACAACA+GGG + chr4_1:82084552-82084571 None:intergenic 40.0%
TTGTGAAAAGTTGCCTGAGT+TGG - chr4_1:82084554-82084573 Msa0577770:CDS 40.0%
! AAAAGTTGCCTGAGTTGGAA+AGG - chr4_1:82084559-82084578 Msa0577770:CDS 40.0%
TTCAAGGCTTTCAGTCAAGA+TGG - chr4_1:82084583-82084602 Msa0577770:CDS 40.0%
ATGGAAGAGAAAGAACCAAG+TGG + chr4_1:82084610-82084629 None:intergenic 40.0%
TCTGTTGAAGATACAGGTGA+CGG - chr4_1:82084658-82084677 Msa0577770:CDS 40.0%
ATGAGAGGTTGAGATTCTCT+AGG + chr4_1:82084688-82084707 None:intergenic 40.0%
ATGAATGGAGTGAAGATGAG+AGG + chr4_1:82084703-82084722 None:intergenic 40.0%
TTCACTCCATTCATGCAAGT+AGG - chr4_1:82084709-82084728 Msa0577770:intron 40.0%
! TACCAGTTCCTCCATGTTTT+CGG + chr4_1:82084747-82084766 None:intergenic 40.0%
AAACATGGAGGAACTGGTAT+TGG - chr4_1:82084748-82084767 Msa0577770:intron 40.0%
AGCATTAGCAAGTGTTTGGT+TGG - chr4_1:82084775-82084794 Msa0577770:intron 40.0%
ATCCAATTTCGCCATTCATG+AGG + chr4_1:82084801-82084820 None:intergenic 40.0%
ATTAGAACTGAGGAGTCCAT+TGG + chr4_1:82084875-82084894 None:intergenic 40.0%
CCCTCAAATTCTGAATATGC+AGG + chr4_1:82084934-82084953 None:intergenic 40.0%
ACGGTTTCAGATTTGAACCA+AGG - chr4_1:82085039-82085058 Msa0577770:intron 40.0%
CGGTTTCAGATTTGAACCAA+GGG - chr4_1:82085040-82085059 Msa0577770:intron 40.0%
GGTTTCAGATTTGAACCAAG+GGG - chr4_1:82085041-82085060 Msa0577770:intron 40.0%
GGGTGTCAACCATAAACAAA+GGG - chr4_1:82085061-82085080 Msa0577770:CDS 40.0%
AGGGAATGCAGTTATCAACA+TGG - chr4_1:82085080-82085099 Msa0577770:CDS 40.0%
TCTTGATTGAGCAGGAAGTT+TGG - chr4_1:82085103-82085122 Msa0577770:CDS 40.0%
CTATCATCACAAAACCACTC+AGG - chr4_1:82085268-82085287 Msa0577770:CDS 40.0%
TACAGCGAGAGATGAATGTT+AGG - chr4_1:82085313-82085332 Msa0577770:intron 40.0%
TCTCTTAGCCATCTTCTTGT+TGG - chr4_1:82085372-82085391 Msa0577770:intron 40.0%
CTCTTAGCCATCTTCTTGTT+GGG - chr4_1:82085373-82085392 Msa0577770:intron 40.0%
! TTTTCCTCCCAACAAGAAGA+TGG + chr4_1:82085383-82085402 None:intergenic 40.0%
!! GCTGGTGCTTTGAAAAAGTA+TGG - chr4_1:82085444-82085463 Msa0577770:intron 40.0%
! GAAAAAGTATGGAGCAGATG+TGG - chr4_1:82085455-82085474 Msa0577770:intron 40.0%
ATTGCATACCCATCCATTTC+TGG + chr4_1:82085564-82085583 None:intergenic 40.0%
TACAGGTAGAATCAGAGAGA+TGG - chr4_1:82085933-82085952 Msa0577770:CDS 40.0%
TCTGCAGTCATCGCTAAAAT+CGG + chr4_1:82086000-82086019 None:intergenic 40.0%
GATGACTGCAGATGTAATTC+AGG - chr4_1:82086008-82086027 Msa0577770:five_prime_UTR 40.0%
CTACACATGAGAAATGCCTA+AGG - chr4_1:82086031-82086050 Msa0577770:five_prime_UTR 40.0%
TGAAGCCGAACAACTTTATC+GGG - chr4_1:82086086-82086105 Msa0577770:five_prime_UTR 40.0%
CTATCTCATCGTCTCACAAA+AGG - chr4_1:82086180-82086199 Msa0577770:five_prime_UTR 40.0%
! TGCTGTTTATGAAAGATCCC+TGG - chr4_1:82086262-82086281 Msa0577770:five_prime_UTR 40.0%
AGTAGGATCCAAGTTGTAGT+TGG - chr4_1:82086320-82086339 Msa0577770:five_prime_UTR 40.0%
! ACTGAGAGACTGACTTTACA+TGG + chr4_1:82086376-82086395 None:intergenic 40.0%
! CCTTGTGTTCTTAAAAGTGC+CGG - chr4_1:82086569-82086588 Msa0577770:five_prime_UTR 40.0%
CTCTAGCATGAACTAACTGC+AGG + chr4_1:82080359-82080378 None:intergenic 45.0%
CAAAGATGTGGCTGAAATGG+TGG - chr4_1:82080802-82080821 Msa0577770:CDS 45.0%
AGAGAGTGAAGAGAGAGTTG+TGG - chr4_1:82080886-82080905 Msa0577770:intron 45.0%
!! TGTTGACATGGGTATTGGGT+TGG - chr4_1:82080919-82080938 Msa0577770:intron 45.0%
GTTGGACTGTAGTGTCTTTG+TGG - chr4_1:82080937-82080956 Msa0577770:intron 45.0%
TGAAAGGGCTAGGATTGTTC+AGG - chr4_1:82081025-82081044 Msa0577770:intron 45.0%
AGTACCTGATCAATGGCTGA+GGG + chr4_1:82081125-82081144 None:intergenic 45.0%
AAGTACCTGATCAATGGCTG+AGG + chr4_1:82081126-82081145 None:intergenic 45.0%
CTGCAAGAGTCGAATTGATC+GGG + chr4_1:82081231-82081250 None:intergenic 45.0%
CAATTCGACTCTTGCAGATC+AGG - chr4_1:82081234-82081253 Msa0577770:CDS 45.0%
TTTGAGAGGCCTCTAACAAG+CGG - chr4_1:82081476-82081495 Msa0577770:CDS 45.0%
TATTCTTCCTGAAGAGGGGA+TGG + chr4_1:82081638-82081657 None:intergenic 45.0%
GGAGCATATTCTTCCTGAAG+AGG + chr4_1:82081644-82081663 None:intergenic 45.0%
GTGCAAGAGAATCAGGCAAA+GGG - chr4_1:82082072-82082091 Msa0577770:CDS 45.0%
TGCAAGAGAATCAGGCAAAG+GGG - chr4_1:82082073-82082092 Msa0577770:CDS 45.0%
GCTAAACAGGTATCTTGGTG+GGG - chr4_1:82082870-82082889 Msa0577770:intron 45.0%
GGAAACATGAGATGCATTGC+AGG - chr4_1:82083070-82083089 Msa0577770:CDS 45.0%
AGCAGATGTTGCAAAATCCC+AGG - chr4_1:82083346-82083365 Msa0577770:intron 45.0%
CAAGTCCGTGTAATTAGTGC+AGG + chr4_1:82083413-82083432 None:intergenic 45.0%
GGAATATGTCAGAACAGCAC+AGG - chr4_1:82083649-82083668 Msa0577770:intron 45.0%
! TACCTCGACTCCTTTTCCTT+GGG + chr4_1:82083816-82083835 None:intergenic 45.0%
! TTACCTCGACTCCTTTTCCT+TGG + chr4_1:82083817-82083836 None:intergenic 45.0%
TGCTAATAGGTGATCCTGGA+AGG - chr4_1:82083978-82083997 Msa0577770:intron 45.0%
TAGGTGATCCTGGAAGGTTT+CGG - chr4_1:82083984-82084003 Msa0577770:intron 45.0%
! CTCAGGCAACTTTTCACAAC+AGG + chr4_1:82084553-82084572 None:intergenic 45.0%
CCTTGAATCCTTTCCAACTC+AGG + chr4_1:82084570-82084589 None:intergenic 45.0%
! CCTGAGTTGGAAAGGATTCA+AGG - chr4_1:82084567-82084586 Msa0577770:CDS 45.0%
TTCAGTCAAGATGGACCACT+TGG - chr4_1:82084592-82084611 Msa0577770:CDS 45.0%
GACGAACCTACTTGCATGAA+TGG + chr4_1:82084718-82084737 None:intergenic 45.0%
! ACCAGTTCCTCCATGTTTTC+GGG + chr4_1:82084746-82084765 None:intergenic 45.0%
!! TGTTTGGTTGGCCTCATGAA+TGG - chr4_1:82084787-82084806 Msa0577770:intron 45.0%
TTTACTGCTGTCTTCGCCAA+TGG - chr4_1:82084856-82084875 Msa0577770:intron 45.0%
CAATATCACATCCAACGCCT+TGG - chr4_1:82085003-82085022 Msa0577770:intron 45.0%
CCTTGGCATTCACGTTGAAA+CGG - chr4_1:82085020-82085039 Msa0577770:intron 45.0%
TGTTTATGGTTGACACCCCT+TGG + chr4_1:82085059-82085078 None:intergenic 45.0%
! GGGGTGTCAACCATAAACAA+AGG - chr4_1:82085060-82085079 Msa0577770:CDS 45.0%
! CAACATGGTCTTGATTGAGC+AGG - chr4_1:82085095-82085114 Msa0577770:CDS 45.0%
AGCACAAGGAAAATCAGCCA+CGG - chr4_1:82085162-82085181 Msa0577770:CDS 45.0%
! ACAACTTTGGAGGAAAACCG+TGG + chr4_1:82085182-82085201 None:intergenic 45.0%
TTAGCCATCTTCTTGTTGGG+AGG - chr4_1:82085376-82085395 Msa0577770:intron 45.0%
! GATGTGGTTTGTGTTAGCAG+TGG - chr4_1:82085471-82085490 Msa0577770:intron 45.0%
AAACATGCGTCGAACTGATG+AGG + chr4_1:82085525-82085544 None:intergenic 45.0%
TCAGTTCGACGCATGTTTCA+TGG - chr4_1:82085527-82085546 Msa0577770:intron 45.0%
CATGAGAAATGCCTAAGGTG+TGG - chr4_1:82086036-82086055 Msa0577770:five_prime_UTR 45.0%
GAAATGCCTAAGGTGTGGAA+TGG - chr4_1:82086041-82086060 Msa0577770:five_prime_UTR 45.0%
! TGATAGGGAGTGTGCATAGT+AGG - chr4_1:82086303-82086322 Msa0577770:five_prime_UTR 45.0%
!! CCGGCACTTTTAAGAACACA+AGG + chr4_1:82086572-82086591 None:intergenic 45.0%
!! ATTTATTAAACAAATTAAAA+AGG + chr4_1:82083382-82083401 None:intergenic 5.0%
!!! TTTTAATTTGTTTAATAAAT+TGG - chr4_1:82083382-82083401 Msa0577770:intron 5.0%
GGACAGAGTCACAGAGACAA+TGG - chr4_1:82080128-82080147 Msa0577770:three_prime_UTR 50.0%
TCAAACCTTGAACACTCGCG+TGG - chr4_1:82080297-82080316 Msa0577770:three_prime_UTR 50.0%
! TTCCTATTGGCCCCTCCTTT+TGG - chr4_1:82080421-82080440 Msa0577770:three_prime_UTR 50.0%
TACCAAAAGGAGGGGCCAAT+AGG + chr4_1:82080426-82080445 None:intergenic 50.0%
GTAGCAGCTACCAAAAGGAG+GGG + chr4_1:82080434-82080453 None:intergenic 50.0%
GGTAGCAGCTACCAAAAGGA+GGG + chr4_1:82080435-82080454 None:intergenic 50.0%
AGGTAGCAGCTACCAAAAGG+AGG + chr4_1:82080436-82080455 None:intergenic 50.0%
GTCAGGTAGCAGCTACCAAA+AGG + chr4_1:82080439-82080458 None:intergenic 50.0%
GCATGTGTGATGAAAGGGCT+AGG - chr4_1:82081015-82081034 Msa0577770:intron 50.0%
TCTAGGCAAGGTTCGAAAGC+CGG - chr4_1:82081201-82081220 Msa0577770:CDS 50.0%
! GTCGAATTGATCGGGAGTAC+CGG + chr4_1:82081223-82081242 None:intergenic 50.0%
ACGACACTGACACGTCAACA+CGG + chr4_1:82081335-82081354 None:intergenic 50.0%
! TATGCCACACCGCTTGTTAG+AGG + chr4_1:82081488-82081507 None:intergenic 50.0%
GTGTTGCGTGCAAGAGAATC+AGG - chr4_1:82082065-82082084 Msa0577770:CDS 50.0%
CGTGCAAGAGAATCAGGCAA+AGG - chr4_1:82082071-82082090 Msa0577770:CDS 50.0%
!!! GGGTTTTAACTGCACCCTTC+AGG - chr4_1:82082093-82082112 Msa0577770:CDS 50.0%
AAGCTGTCCTGGATAGCTCA+TGG + chr4_1:82082528-82082547 None:intergenic 50.0%
GGCGGTTTCTGTTTGAACCT+GGG + chr4_1:82083179-82083198 None:intergenic 50.0%
AGGCGGTTTCTGTTTGAACC+TGG + chr4_1:82083180-82083199 None:intergenic 50.0%
ATTGCAGCACATGGCAAAGG+CGG + chr4_1:82083197-82083216 None:intergenic 50.0%
GGAGCTTAAAAAACGTGCGG+AGG - chr4_1:82083322-82083341 Msa0577770:intron 50.0%
GTCAGAACAGCACAGGAAAG+TGG - chr4_1:82083656-82083675 Msa0577770:intron 50.0%
TCGTCGATCTCCCGAAAACA+TGG - chr4_1:82084733-82084752 Msa0577770:intron 50.0%
TCGATCTCCCGAAAACATGG+AGG - chr4_1:82084736-82084755 Msa0577770:intron 50.0%
TCCCGAAAACATGGAGGAAC+TGG - chr4_1:82084742-82084761 Msa0577770:intron 50.0%
GGCCTCATGAATGGCGAAAT+TGG - chr4_1:82084796-82084815 Msa0577770:intron 50.0%
CCGTTTCAACGTGAATGCCA+AGG + chr4_1:82085023-82085042 None:intergenic 50.0%
TGCCTAAGGTGTGGAATGGA+TGG - chr4_1:82086045-82086064 Msa0577770:five_prime_UTR 50.0%
GCCTAAGGTGTGGAATGGAT+GGG - chr4_1:82086046-82086065 Msa0577770:five_prime_UTR 50.0%
ACCCATCCATTCCACACCTT+AGG + chr4_1:82086050-82086069 None:intergenic 50.0%
CTCATCGTCTCACAAAAGGG+AGG - chr4_1:82086184-82086203 Msa0577770:five_prime_UTR 50.0%
CAGAACCACGCGAGTGTTCA+AGG + chr4_1:82080305-82080324 None:intergenic 55.0%
GAGTCCCTCAGCCATTGATC+AGG - chr4_1:82081118-82081137 Msa0577770:intron 55.0%
CGACACTGACACGTCAACAC+GGG + chr4_1:82081334-82081353 None:intergenic 55.0%
ATTGGAGCCATCCCCTCTTC+AGG - chr4_1:82081628-82081647 Msa0577770:CDS 55.0%
GTCCCAAGGAAAAGGAGTCG+AGG - chr4_1:82083811-82083830 Msa0577770:CDS 55.0%
CAACGTGAATGCCAAGGCGT+TGG + chr4_1:82085017-82085036 None:intergenic 55.0%
GTGAATCGTGCAGTAGCAGC+TGG - chr4_1:82085426-82085445 Msa0577770:intron 55.0%
CATGCGTCGAACTGATGAGG+TGG + chr4_1:82085522-82085541 None:intergenic 55.0%
GAGGCCTCTAACAAGCGGTG+TGG - chr4_1:82081481-82081500 Msa0577770:CDS 60.0%
GCAAGCATGCTTGCCCTGAG+TGG + chr4_1:82085285-82085304 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 82080093 82086678 82080093 ID=Msa0577770;Name=Msa0577770
chr4_1 mRNA 82080093 82086678 82080093 ID=Msa0577770-mRNA-1;Parent=Msa0577770;Name=Msa0577770-mRNA-1;_AED=0.09;_eAED=0.09;_QI=714|1|1|1|1|1|10|541|970
chr4_1 exon 82080093 82080847 82080093 ID=Msa0577770-mRNA-1:exon:29698;Parent=Msa0577770-mRNA-1
chr4_1 exon 82081197 82082329 82081197 ID=Msa0577770-mRNA-1:exon:29697;Parent=Msa0577770-mRNA-1
chr4_1 exon 82082729 82082827 82082729 ID=Msa0577770-mRNA-1:exon:29696;Parent=Msa0577770-mRNA-1
chr4_1 exon 82082939 82083168 82082939 ID=Msa0577770-mRNA-1:exon:29695;Parent=Msa0577770-mRNA-1
chr4_1 exon 82083270 82083321 82083270 ID=Msa0577770-mRNA-1:exon:29694;Parent=Msa0577770-mRNA-1
chr4_1 exon 82083404 82083590 82083404 ID=Msa0577770-mRNA-1:exon:29693;Parent=Msa0577770-mRNA-1
chr4_1 exon 82083680 82083892 82083680 ID=Msa0577770-mRNA-1:exon:29692;Parent=Msa0577770-mRNA-1
chr4_1 exon 82084552 82084721 82084552 ID=Msa0577770-mRNA-1:exon:29691;Parent=Msa0577770-mRNA-1
chr4_1 exon 82085047 82085328 82085047 ID=Msa0577770-mRNA-1:exon:29690;Parent=Msa0577770-mRNA-1
chr4_1 exon 82085632 82086678 82085632 ID=Msa0577770-mRNA-1:exon:29689;Parent=Msa0577770-mRNA-1
chr4_1 five_prime_UTR 82085965 82086678 82085965 ID=Msa0577770-mRNA-1:five_prime_utr;Parent=Msa0577770-mRNA-1
chr4_1 CDS 82085632 82085964 82085632 ID=Msa0577770-mRNA-1:cds;Parent=Msa0577770-mRNA-1
chr4_1 CDS 82085047 82085328 82085047 ID=Msa0577770-mRNA-1:cds;Parent=Msa0577770-mRNA-1
chr4_1 CDS 82084552 82084721 82084552 ID=Msa0577770-mRNA-1:cds;Parent=Msa0577770-mRNA-1
chr4_1 CDS 82083680 82083892 82083680 ID=Msa0577770-mRNA-1:cds;Parent=Msa0577770-mRNA-1
chr4_1 CDS 82083404 82083590 82083404 ID=Msa0577770-mRNA-1:cds;Parent=Msa0577770-mRNA-1
chr4_1 CDS 82083270 82083321 82083270 ID=Msa0577770-mRNA-1:cds;Parent=Msa0577770-mRNA-1
chr4_1 CDS 82082939 82083168 82082939 ID=Msa0577770-mRNA-1:cds;Parent=Msa0577770-mRNA-1
chr4_1 CDS 82082729 82082827 82082729 ID=Msa0577770-mRNA-1:cds;Parent=Msa0577770-mRNA-1
chr4_1 CDS 82081197 82082329 82081197 ID=Msa0577770-mRNA-1:cds;Parent=Msa0577770-mRNA-1
chr4_1 CDS 82080634 82080847 82080634 ID=Msa0577770-mRNA-1:cds;Parent=Msa0577770-mRNA-1
chr4_1 three_prime_UTR 82080093 82080633 82080093 ID=Msa0577770-mRNA-1:three_prime_utr;Parent=Msa0577770-mRNA-1
Gene Sequence

>Msa0577770

ATGTGGCTGAAATGGTGGGAGAAGATTTTAGGGAATGGTTACAAAATCAATCAACAGTACTATCAGTATATTGGGTCAAAGAGAGTGAAGAGAGAGTTGTGGAGAAAGCTTTTGTTGACATGGGTATTGGGTTGGACTGTAGTGTCTTTGTGGATCTTCTGCTTTATGAGTTTACAAGCTACTGAGAAGAGGAAAGAAACTCTTGCTAGCATGTGTGATGAAAGGGCTAGGATTGTTCAGGATCAGTTTAATGTTAGTATGAACCATATTCAAGCTATGTCTATTTTGATCTCAACTTTTCATCATGCTAAGAGTCCCTCAGCCATTGATCAGAGAACTTTTGCTAGCTACACAGAAAGAACAGCTTTTGAGAGGCCTCTAACAAGCGGTGTGGCATATGCTGTAAGAGTGCTTCATTATGAAAGGGAACAATTTGAGAAGCAACAAGGTTGGATTATTAAGAGAATGGATACTCTAGAGCAGAATCCAGTTCATAAGAACGATTATGCTGTAGAGGAATTGGAGCCATCCCCTCTTCAGGAAGAATATGCTCCTGTCATATTTGCACAAGATACAATTTCACATGTCATTTCTGTTGATATGCTTTCTGGAAAGGAAGACCGTGATAATGTGTTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCACCCTTCAGGCTTCTCAAATCAAATCGGTTAGGAGTTATCCTTACATTTGCCGTCTACAAGAGATATCTTCCATCAAATGCAACTCCAAATGAAAGGATTCAAGCAACTAATGGGTATCTTGGTGGGGTATTTGATGTTGAGTCATTAGTGGAGAAATTACTTGAGCAACTTGCTAGCAAGCAAAGTGTAATTGTTAATGTATATGACACTACAAATCATACTCATCCAATTGCCATGTATGGCTCAAATATATCAGGGGATGTGTTCAATCATGTCAGCACTCTTAACTTTGGTGACCCTTTCAGGAAACATGAGATGCATTGCAGGTTCAAACAGAAACCGCCTTTGCCATGTGCTGCAATATTAACTTCAATTGGCATTCTTGTTATTGCTCTCCTTGTTGGACATATTTTCTATGCCACCGTGAATCGAATTGCAAAAGTAGAAGATGATTACCATGAAATGATGGAGCTTAAAAAACGTGCGGAGGCAGCAGATGTTGCAAAATCCCAGTTTCTTGCCACTGTTTCCCATGAAATCAGAACACCGATGAATGGTGTTTTAGGGATGATGCATATGCTTATGGACACAGATTTAGATGTAACTCAACAGGAATATGTCAGAACAGCACAGGAAAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGATCAGGCAAAGATTGAATTTGGTAAGCTAGAGCTTGAGGCAGTGCTTTTTGACATACGTTCGATTTTGGATGATGTATTGTCACTATTTTCTGATAAGTCCCAAGGAAAAGGAGTCGAGTTGGCAGCTTATGTGTCAGATCAAGTTCCTAAACTGCTAATAGGTGATCCTGGAAGGTTTCGGCAAATAATTACTAATCTCATGGGCAACTCAATTAAGTTCACAGACAAAGGACACATTTTTGTGACTATCCATCTTGTTGAGGAGATTGTTCATTCTATAGAGGTTGACAATGAATCAAATCCAGAAAATACATTGAGTGGTTTCCCTGTTGTGAAAAGTTGCCTGAGTTGGAAAGGATTCAAGGCTTTCAGTCAAGATGGACCACTTGGTTCTTTCTCTTCCATCTCTAGTGATCTCATCAATTTGATTGTATCTGTTGAAGATACAGGTGACGGTATTCCTAGAGAATCTCAACCTCTCATCTTCACTCCATTCATGCAAGTAGGTTCGTCGATCTCCCGAAAACATGGAGGAACTGGTATTGGACTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGCGAAATTGGATTTGCAAGTGAACCAAAAACTGGTTCCACTTTTACTTTTACTGCTGTCTTCGCCAATGGACTCCTCAGTTCTAATGAGTGTAAAATACGGCAAATCAACGACCAAACAAAACCTGCATATTCAGAATTTGAGGGTATGAATGCATTGGTTATTGATCCAAGACCTATTAGAGCAAAAGTGTCTCAATATCACATCCAACGCCTTGGCATTCACGTTGAAACGGTTTCAGATTTGAACCAAGGGGTGTCAACCATAAACAAAGGGAATGCAGTTATCAACATGGTCTTGATTGAGCAGGAAGTTTGGTATAGAGATTCAAGCATGTCGTCTCATTTTTTCGATAGCACAAGGAAAATCAGCCACGGTTTTCCTCCAAAGTTGTTCATTCTTGTTAATTCTAGCAACTCTTCTAAAACTAGCAGTGTAACGTCAGATGTTGATAATCCTACTATCATCACAAAACCACTCAGGGCAAGCATGCTTGCTGCGTCACTACAGCGAGAGATGAATGTTAGGAACAAGAGAACTCTAAATAGGGACCTTCAAAATTTGTCTCTTAGCCATCTTCTTGTTGGGAGGAAAATTCTAATTGTTGATGATAATGGCGTGAATCGTGCAGTAGCAGCTGGTGCTTTGAAAAAGTATGGAGCAGATGTGGTTTGTGTTAGCAGTGGAAAAGATGCTATCTCATCGCTGAAGCCACCTCATCAGTTCGACGCATGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACAGGTAGAATCAGAGAGATGGAACAGAATGTAAACACAGAAGTATCTATAAACTGGCATGTGCCGATTTTAGCGATGACTGCAGATGTAATTCAGGCTACACATGAGAAATGCCTAAGGTGTGGAATGGATGGGTATGTTTCAAAACCATTTGAAGCCGAACAACTTTATCGGGAAGTTTCTCGGTTTTTCCTGTCATCTTGA
Protein sequence

>Msa0577770

MWLKWWEKILGNGYKINQQYYQYIGSKRVKRELWRKLLLTWVLGWTVVSLWIFCFMSLQATEKRKETLASMCDERARIVQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFASYTERTAFERPLTSGVAYAVRVLHYEREQFEKQQGWIIKRMDTLEQNPVHKNDYAVEELEPSPLQEEYAPVIFAQDTISHVISVDMLSGKEDRDNVLRARESGKGVLTAPFRLLKSNRLGVILTFAVYKRYLPSNATPNERIQATNGYLGGVFDVESLVEKLLEQLASKQSVIVNVYDTTNHTHPIAMYGSNISGDVFNHVSTLNFGDPFRKHEMHCRFKQKPPLPCAAILTSIGILVIALLVGHIFYATVNRIAKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRSILDDVLSLFSDKSQGKGVELAAYVSDQVPKLLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEIVHSIEVDNESNPENTLSGFPVVKSCLSWKGFKAFSQDGPLGSFSSISSDLINLIVSVEDTGDGIPRESQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFASEPKTGSTFTFTAVFANGLLSSNECKIRQINDQTKPAYSEFEGMNALVIDPRPIRAKVSQYHIQRLGIHVETVSDLNQGVSTINKGNAVINMVLIEQEVWYRDSSMSSHFFDSTRKISHGFPPKLFILVNSSNSSKTSSVTSDVDNPTIITKPLRASMLAASLQREMNVRNKRTLNRDLQNLSLSHLLVGRKILIVDDNGVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATGRIREMEQNVNTEVSINWHVPILAMTADVIQATHEKCLRCGMDGYVSKPFEAEQLYREVSRFFLSS*