Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587290 | XP_003604378.1 | 99.052 | 211 | 2 | 0 | 1 | 211 | 1 | 211 | 3.10e-153 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587290 | sp|Q9LVZ8|LOR12_ARATH | 56.731 | 208 | 86 | 2 | 4 | 211 | 17 | 220 | 8.55e-83 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064180 | Msa0587290 | 0.804687 | 1.916826e-49 | -8.615850e-47 |
| Msa0096020 | Msa0587290 | 0.836202 | 1.074692e-56 | -8.615850e-47 |
| Msa0138610 | Msa0587290 | 0.816307 | 5.916977e-52 | -8.615850e-47 |
| Msa0145710 | Msa0587290 | 0.821479 | 3.949837e-53 | -8.615850e-47 |
| Msa0412760 | Msa0587290 | 0.851139 | 1.077898e-60 | -8.615850e-47 |
| Msa0500490 | Msa0587290 | 0.801678 | 8.039110e-49 | -8.615850e-47 |
| Msa0530380 | Msa0587290 | 0.891268 | 4.638104e-74 | -8.615850e-47 |
| Msa0566010 | Msa0587290 | 0.808772 | 2.627493e-50 | -8.615850e-47 |
| Msa0577800 | Msa0587290 | 0.805050 | 1.609300e-49 | -8.615850e-47 |
| Msa0580540 | Msa0587290 | 0.819766 | 9.774826e-53 | -8.615850e-47 |
| Msa0587290 | Msa0608940 | 0.801414 | 9.108112e-49 | -8.615850e-47 |
| Msa0587290 | Msa0610770 | 0.806900 | 6.571328e-50 | -8.615850e-47 |
| Msa0587290 | Msa0621780 | 0.819145 | 1.354236e-52 | -8.615850e-47 |
| Msa0587290 | Msa0627080 | 0.830927 | 2.228546e-55 | -8.615850e-47 |
| Msa0587290 | Msa0665150 | 0.963572 | 3.000856e-122 | -8.615850e-47 |
| Msa0587290 | Msa0748980 | 0.820127 | 8.083994e-53 | -8.615850e-47 |
| Msa0587290 | Msa0754350 | 0.842560 | 2.400609e-58 | -8.615850e-47 |
| Msa0587290 | Msa0755080 | 0.810903 | 9.145598e-51 | -8.615850e-47 |
| Msa0587290 | Msa0756440 | 0.805701 | 1.175712e-49 | -8.615850e-47 |
| Msa0587290 | Msa0794860 | 0.803693 | 3.085965e-49 | -8.615850e-47 |
| Msa0587290 | Msa0795710 | 0.820547 | 6.474526e-53 | -8.615850e-47 |
| Msa0587290 | Msa0833450 | 0.821515 | 3.876005e-53 | -8.615850e-47 |
| Msa0587290 | Msa0834450 | 0.800406 | 1.463304e-48 | -8.615850e-47 |
| Msa0587290 | Msa0835550 | 0.811001 | 8.710166e-51 | -8.615850e-47 |
| Msa0587290 | Msa0864730 | 0.803290 | 3.740589e-49 | -8.615850e-47 |
| Msa0587290 | Msa0864750 | 0.800566 | 1.357193e-48 | -8.615850e-47 |
| Msa0587290 | Msa0984840 | 0.800770 | 1.233167e-48 | -8.615850e-47 |
| Msa0587290 | Msa1067930 | 0.832546 | 8.886964e-56 | -8.615850e-47 |
| Msa0587290 | Msa1206830 | 0.830389 | 3.019009e-55 | -8.615850e-47 |
| Msa0587290 | Msa1242990 | 0.847337 | 1.232626e-59 | -8.615850e-47 |
| Msa0587290 | Msa1257100 | 0.813981 | 1.943888e-51 | -8.615850e-47 |
| Msa0587290 | Msa1278420 | 0.807379 | 5.201329e-50 | -8.615850e-47 |
| Msa0587290 | Msa1284390 | 0.809467 | 1.865007e-50 | -8.615850e-47 |
| Msa0587290 | Msa1384620 | 0.801836 | 7.462684e-49 | -8.615850e-47 |
| Msa0587290 | Msa1403950 | 0.830724 | 2.500076e-55 | -8.615850e-47 |
| Msa0587290 | Msa1406990 | 0.814024 | 1.901328e-51 | -8.615850e-47 |
| Msa0587290 | Msa1452200 | 0.806477 | 8.072921e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587290 | MtrunA17_Chr4g0003271 | 99.052 | 211 | 2 | 0 | 1 | 211 | 1 | 211 | 2.85e-157 | 433 |
| Msa0587290 | MtrunA17_Chr2g0333101 | 69.668 | 211 | 63 | 1 | 2 | 211 | 13 | 223 | 2.80e-107 | 307 |
| Msa0587290 | MtrunA17_Chr2g0333111 | 66.507 | 209 | 69 | 1 | 4 | 211 | 16 | 224 | 7.90e-105 | 301 |
| Msa0587290 | MtrunA17_Chr8g0387561 | 35.938 | 192 | 101 | 4 | 18 | 190 | 43 | 231 | 2.83e-29 | 108 |
| Msa0587290 | MtrunA17_Chr7g0244331 | 29.947 | 187 | 125 | 5 | 11 | 194 | 27 | 210 | 2.97e-26 | 100 |
| Msa0587290 | MtrunA17_Chr8g0345091 | 32.418 | 182 | 116 | 4 | 16 | 193 | 20 | 198 | 7.64e-26 | 99.4 |
| Msa0587290 | MtrunA17_Chr7g0244341 | 29.032 | 186 | 126 | 5 | 11 | 193 | 27 | 209 | 8.59e-24 | 94.4 |
| Msa0587290 | MtrunA17_Chr7g0244371 | 27.895 | 190 | 130 | 6 | 7 | 193 | 22 | 207 | 3.27e-23 | 92.8 |
| Msa0587290 | MtrunA17_Chr7g0244321 | 28.804 | 184 | 125 | 5 | 11 | 191 | 27 | 207 | 4.98e-23 | 92.0 |
| Msa0587290 | MtrunA17_Chr2g0300771 | 29.557 | 203 | 126 | 7 | 7 | 196 | 7 | 205 | 5.91e-21 | 86.7 |
| Msa0587290 | MtrunA17_Chr4g0013291 | 26.667 | 195 | 129 | 7 | 2 | 191 | 10 | 195 | 2.45e-19 | 82.0 |
| Msa0587290 | MtrunA17_Chr7g0244361 | 24.500 | 200 | 132 | 6 | 3 | 190 | 43 | 235 | 3.73e-18 | 79.7 |
| Msa0587290 | MtrunA17_Chr7g0244111 | 25.833 | 120 | 83 | 4 | 79 | 194 | 5 | 122 | 2.07e-13 | 64.3 |
| Msa0587290 | MtrunA17_Chr1g0150081 | 23.158 | 190 | 137 | 6 | 3 | 188 | 1 | 185 | 5.38e-12 | 62.0 |
| Msa0587290 | MtrunA17_Chr8g0386591 | 27.778 | 180 | 116 | 7 | 21 | 193 | 32 | 204 | 7.21e-12 | 62.0 |
| Msa0587290 | MtrunA17_Chr8g0386611 | 28.495 | 186 | 118 | 8 | 15 | 193 | 27 | 204 | 8.14e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587290 | AT3G15810.1 | 56.731 | 208 | 86 | 2 | 4 | 211 | 17 | 220 | 8.69e-84 | 248 |
| Msa0587290 | AT1G80120.1 | 62.679 | 209 | 71 | 5 | 6 | 211 | 5 | 209 | 1.13e-78 | 234 |
| Msa0587290 | AT2G38640.1 | 39.888 | 178 | 100 | 4 | 15 | 190 | 20 | 192 | 1.73e-30 | 111 |
| Msa0587290 | AT5G41590.1 | 37.297 | 185 | 102 | 7 | 18 | 190 | 37 | 219 | 3.51e-23 | 93.2 |
| Msa0587290 | AT5G01750.2 | 27.604 | 192 | 133 | 5 | 6 | 194 | 26 | 214 | 9.59e-21 | 86.7 |
| Msa0587290 | AT5G20640.1 | 30.049 | 203 | 125 | 6 | 7 | 194 | 12 | 212 | 1.43e-20 | 86.3 |
| Msa0587290 | AT2G05910.1 | 27.551 | 196 | 127 | 5 | 5 | 194 | 2 | 188 | 4.23e-20 | 84.3 |
| Msa0587290 | AT3G11740.1 | 26.816 | 179 | 124 | 4 | 20 | 194 | 16 | 191 | 1.80e-19 | 82.8 |
| Msa0587290 | AT1G53875.1 | 28.022 | 182 | 115 | 5 | 12 | 186 | 48 | 220 | 1.17e-16 | 75.9 |
| Msa0587290 | AT1G33840.1 | 24.084 | 191 | 135 | 3 | 6 | 191 | 26 | 211 | 8.16e-16 | 73.6 |
| Msa0587290 | AT1G63410.1 | 27.083 | 192 | 127 | 5 | 5 | 192 | 7 | 189 | 2.75e-13 | 66.2 |
| Msa0587290 | AT1G63410.2 | 26.562 | 192 | 128 | 4 | 5 | 192 | 7 | 189 | 4.44e-13 | 65.9 |
| Msa0587290 | AT3G16900.1 | 25.397 | 189 | 114 | 8 | 7 | 191 | 15 | 180 | 1.20e-11 | 61.6 |
| Msa0587290 | AT2G14560.1 | 22.115 | 208 | 150 | 5 | 1 | 202 | 1 | 202 | 4.71e-11 | 60.5 |
| Msa0587290 | AT2G14560.3 | 22.115 | 208 | 150 | 5 | 1 | 202 | 61 | 262 | 9.56e-11 | 60.1 |
Find 70 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAGTTCTTCTCTATTTA+AGG | 0.079515 | 4_2:+8779195 | Msa0587290:five_prime_UTR |
| GGTGAGAATTTCTTTGATAA+TGG | 0.240720 | 4_2:+8781469 | Msa0587290:CDS |
| TATGAATGACATTAATAAAA+TGG | 0.243562 | 4_2:+8781598 | Msa0587290:three_prime_UTR |
| GACATTAATAAAATGGTTAA+TGG | 0.266723 | 4_2:+8781605 | Msa0587290:three_prime_UTR |
| CTTTGCCATGGGATTGGTTT+TGG | 0.269542 | 4_2:+8781429 | Msa0587290:CDS |
| ACTCTTGAAGAGAATGAATA+TGG | 0.302132 | 4_2:+8779301 | Msa0587290:exon |
| GTGAGAATTTCTTTGATAAT+GGG | 0.336997 | 4_2:+8781470 | Msa0587290:CDS |
| ATTCATCAATCTTCTGTAGT+AGG | 0.340424 | 4_2:-8781514 | None:intergenic |
| CTCAGCCACTACTTTCTTTG+TGG | 0.350694 | 4_2:-8781320 | None:intergenic |
| ATGCTTCAAATAATCTATAT+TGG | 0.365062 | 4_2:+8781665 | Msa0587290:three_prime_UTR |
| TAGATTATTTGAAGCATGTA+TGG | 0.367452 | 4_2:-8781659 | None:intergenic |
| GTTTGTTGTGTATGATTGTA+AGG | 0.389745 | 4_2:+8779412 | Msa0587290:CDS |
| AAAATCTTACAGCATCTTTG+TGG | 0.417016 | 4_2:-8781292 | None:intergenic |
| TCTTCCTTATCACGTGTGTT+TGG | 0.423689 | 4_2:-8779467 | None:intergenic |
| TGTGTCCTTTGCCATGGGAT+TGG | 0.448534 | 4_2:+8781423 | Msa0587290:CDS |
| TCACAGTTCTGAAAACATCT+AGG | 0.452269 | 4_2:+8779372 | Msa0587290:CDS |
| AAATCTTACAGCATCTTTGT+GGG | 0.461184 | 4_2:-8781291 | None:intergenic |
| AAAAGAATATTTATTGAGCT+GGG | 0.463914 | 4_2:-8779095 | None:intergenic |
| TCTTCTCACCTTGCGTAGAA+AGG | 0.467170 | 4_2:+8779520 | Msa0587290:CDS |
| TTGGTACTTGATCAGATCAA+TGG | 0.468589 | 4_2:+8781448 | Msa0587290:CDS |
| GCAAAGGACACATCAAAATC+AGG | 0.471041 | 4_2:-8781412 | None:intergenic |
| TCAAATAATCTATATTGGTA+TGG | 0.478091 | 4_2:+8781670 | Msa0587290:three_prime_UTR |
| TGGACCAAACACACGTGATA+AGG | 0.488839 | 4_2:+8779463 | Msa0587290:CDS |
| TCCCATCGTTGATGAAGACT+TGG | 0.494963 | 4_2:-8781127 | None:intergenic |
| TGTGAAGATGAATAAGTTGA+AGG | 0.503415 | 4_2:-8779266 | None:intergenic |
| GATAATCCCCACATTCTAGT+AGG | 0.507448 | 4_2:+8781722 | Msa0587290:three_prime_UTR |
| ATCGTGTACCTCCACTGTTA+TGG | 0.509066 | 4_2:-8781233 | None:intergenic |
| TTGGTCCATACGAGTCAAAC+CGG | 0.510635 | 4_2:-8779448 | None:intergenic |
| TTTGATGTGTCCTTTGCCAT+GGG | 0.516078 | 4_2:+8781418 | Msa0587290:CDS |
| CTGGGAAAATATTGTAAAGG+AGG | 0.523625 | 4_2:-8779077 | None:intergenic |
| GAGCTGGGAAAATATTGTAA+AGG | 0.531777 | 4_2:-8779080 | None:intergenic |
| TTCATCAATCTTCTGTAGTA+GGG | 0.533840 | 4_2:-8781513 | None:intergenic |
| GGTGTGGAGTACCTCATTGA+AGG | 0.534346 | 4_2:+8781262 | Msa0587290:CDS |
| TCAATGAGGTACTCCACACC+TGG | 0.537802 | 4_2:-8781259 | None:intergenic |
| AGGGTGCACCGAGGTTTCAA+TGG | 0.544254 | 4_2:-8781494 | None:intergenic |
| GAAAATATTGTAAAGGAGGG+TGG | 0.551890 | 4_2:-8779073 | None:intergenic |
| CAACGATGGGAAGGATTCAA+AGG | 0.560825 | 4_2:+8781139 | Msa0587290:CDS |
| TAATGCCACAAAGAAAGTAG+TGG | 0.567237 | 4_2:+8781315 | Msa0587290:CDS |
| TGTATGGCTTGAAATTTGAA+AGG | 0.574221 | 4_2:-8781643 | None:intergenic |
| TATATCACCTACTAGAATGT+GGG | 0.575057 | 4_2:-8781729 | None:intergenic |
| AACCAAGTCTTCATCAACGA+TGG | 0.577300 | 4_2:+8781125 | Msa0587290:CDS |
| TTTGTTGTGTATGATTGTAA+GGG | 0.578513 | 4_2:+8779413 | Msa0587290:CDS |
| TTCAAAGGAGAGAGAAAAGA+CGG | 0.580588 | 4_2:+8781154 | Msa0587290:CDS |
| AGTGGCTGAGATTCGTCGTA+AGG | 0.580670 | 4_2:+8781333 | Msa0587290:CDS |
| ACCGAGCATAACACTAGTGG+TGG | 0.583087 | 4_2:-8781362 | None:intergenic |
| AGTACATACCTTTCTACGCA+AGG | 0.584776 | 4_2:-8779528 | None:intergenic |
| ATATATCACCTACTAGAATG+TGG | 0.585210 | 4_2:-8781730 | None:intergenic |
| ACCAAGTCTTCATCAACGAT+GGG | 0.589490 | 4_2:+8781126 | Msa0587290:CDS |
| GGCTGAGATTCGTCGTAAGG+TGG | 0.591532 | 4_2:+8781336 | Msa0587290:CDS |
| GTGTGGAGTACCTCATTGAA+GGG | 0.603117 | 4_2:+8781263 | Msa0587290:CDS |
| CTTGTTCTTATGAACACACA+TGG | 0.616126 | 4_2:+8779491 | Msa0587290:CDS |
| TGGGAAAATATTGTAAAGGA+GGG | 0.616746 | 4_2:-8779076 | None:intergenic |
| TAATGGGACCATTGAAACCT+CGG | 0.618557 | 4_2:+8781486 | Msa0587290:CDS |
| GTGGGAAACACCCTTCAATG+AGG | 0.622701 | 4_2:-8781273 | None:intergenic |
| CCCACCACTAGTGTTATGCT+CGG | 0.625140 | 4_2:+8781361 | Msa0587290:CDS |
| AGTCTTCATCAACGATGGGA+AGG | 0.627932 | 4_2:+8781130 | Msa0587290:CDS |
| TAATGTCATTCATACAACAA+AGG | 0.629575 | 4_2:-8781589 | None:intergenic |
| ATATCACCTACTAGAATGTG+GGG | 0.636423 | 4_2:-8781728 | None:intergenic |
| AAGTACCAAAACCAATCCCA+TGG | 0.637046 | 4_2:-8781434 | None:intergenic |
| AAAGATCATCAATAATCGCA+CGG | 0.646246 | 4_2:+8781200 | Msa0587290:CDS |
| CAAAACCAATCCCATGGCAA+AGG | 0.650353 | 4_2:-8781428 | None:intergenic |
| TTTACCGAGCATAACACTAG+TGG | 0.651825 | 4_2:-8781365 | None:intergenic |
| CGAGCATAACACTAGTGGTG+GGG | 0.652992 | 4_2:-8781360 | None:intergenic |
| CCGAGCATAACACTAGTGGT+GGG | 0.663464 | 4_2:-8781361 | None:intergenic |
| GGTACACGATAACCCAGGTG+TGG | 0.667191 | 4_2:+8781246 | Msa0587290:CDS |
| AAGAATGACCATAACAGTGG+AGG | 0.694861 | 4_2:+8781225 | Msa0587290:CDS |
| GTCAAGAATGACCATAACAG+TGG | 0.699668 | 4_2:+8781222 | Msa0587290:CDS |
| CAATGAGGTACTCCACACCT+GGG | 0.718093 | 4_2:-8781258 | None:intergenic |
| TTCTGTAGTAGGGTGCACCG+AGG | 0.725146 | 4_2:-8781503 | None:intergenic |
| GTGGAGGTACACGATAACCC+AGG | 0.734091 | 4_2:+8781241 | Msa0587290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTTAAAACTTGTAT+AGG | + | chr4_2:8780809-8780828 | Msa0587290:intron | 10.0% |
| !!! | ATGTATTTTTAGTTTACAAT+CGG | + | chr4_2:8780052-8780071 | Msa0587290:intron | 15.0% |
| !!! | AAGATTTTTTTTATGTGAAT+CGG | - | chr4_2:8780333-8780352 | None:intergenic | 15.0% |
| !! | TATGAATGACATTAATAAAA+TGG | + | chr4_2:8781598-8781617 | Msa0587290:three_prime_UTR | 15.0% |
| !! | AAAAGAATATTTATTGAGCT+GGG | - | chr4_2:8779098-8779117 | None:intergenic | 20.0% |
| !! | AAAAAGAATATTTATTGAGC+TGG | - | chr4_2:8779099-8779118 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTGTGCTGTAAA+GGG | - | chr4_2:8779164-8779183 | None:intergenic | 20.0% |
| !!! | GGAAGATATATTTTGTTATT+GGG | + | chr4_2:8779965-8779984 | Msa0587290:intron | 20.0% |
| !!! | TTTTTAAAACTTGTATAGGA+AGG | + | chr4_2:8780813-8780832 | Msa0587290:intron | 20.0% |
| !!! | TTTTAAAACTTGTATAGGAA+GGG | + | chr4_2:8780814-8780833 | Msa0587290:intron | 20.0% |
| !! | GACATTAATAAAATGGTTAA+TGG | + | chr4_2:8781605-8781624 | Msa0587290:three_prime_UTR | 20.0% |
| !! | ATGCTTCAAATAATCTATAT+TGG | + | chr4_2:8781665-8781684 | Msa0587290:three_prime_UTR | 20.0% |
| !! | TCAAATAATCTATATTGGTA+TGG | + | chr4_2:8781670-8781689 | Msa0587290:three_prime_UTR | 20.0% |
| !!! | CTTTTTATTTTGTGCTGTAA+AGG | - | chr4_2:8779165-8779184 | None:intergenic | 25.0% |
| ! | CAATAGTTCTTCTCTATTTA+AGG | + | chr4_2:8779195-8779214 | Msa0587290:five_prime_UTR | 25.0% |
| !! | TTTGTTGTGTATGATTGTAA+GGG | + | chr4_2:8779413-8779432 | Msa0587290:CDS | 25.0% |
| ! | TCTTTGTGTTCTGTAATAAT+TGG | + | chr4_2:8779570-8779589 | Msa0587290:intron | 25.0% |
| !!! | CGGAAGATATATTTTGTTAT+TGG | + | chr4_2:8779964-8779983 | Msa0587290:intron | 25.0% |
| ! | TTTCTTCTTGAATATACAAC+TGG | + | chr4_2:8780109-8780128 | Msa0587290:intron | 25.0% |
| ! | TTGAATATACAACTGGATTT+GGG | + | chr4_2:8780116-8780135 | Msa0587290:intron | 25.0% |
| ! | ATCTTGAAAAAGAGTGATTA+AGG | - | chr4_2:8780460-8780479 | None:intergenic | 25.0% |
| !!! | ATATTGATGATGAGTTAACA+TGG | + | chr4_2:8781083-8781102 | Msa0587290:intron | 25.0% |
| !! | GTGAGAATTTCTTTGATAAT+GGG | + | chr4_2:8781470-8781489 | Msa0587290:CDS | 25.0% |
| ! | TAATGTCATTCATACAACAA+AGG | - | chr4_2:8781592-8781611 | None:intergenic | 25.0% |
| !! | TAGATTATTTGAAGCATGTA+TGG | - | chr4_2:8781662-8781681 | None:intergenic | 25.0% |
| TGGGAAAATATTGTAAAGGA+GGG | - | chr4_2:8779079-8779098 | None:intergenic | 30.0% | |
| !! | AAACGTGTTTTTGTGCTAAA+TGG | - | chr4_2:8779122-8779141 | None:intergenic | 30.0% |
| ! | TGTGAAGATGAATAAGTTGA+AGG | - | chr4_2:8779269-8779288 | None:intergenic | 30.0% |
| ACTCTTGAAGAGAATGAATA+TGG | + | chr4_2:8779301-8779320 | Msa0587290:exon | 30.0% | |
| !! | AAAACATCTAGGTTTTTCAG+TGG | + | chr4_2:8779383-8779402 | Msa0587290:CDS | 30.0% |
| !! | GTTTGTTGTGTATGATTGTA+AGG | + | chr4_2:8779412-8779431 | Msa0587290:CDS | 30.0% |
| ACAACCAACAAAATCTGAAT+CGG | - | chr4_2:8779636-8779655 | None:intergenic | 30.0% | |
| ATCTCTGTCTTAACTAACTT+TGG | + | chr4_2:8779659-8779678 | Msa0587290:intron | 30.0% | |
| ATTAGTAACGTTGTACGAAA+AGG | - | chr4_2:8779833-8779852 | None:intergenic | 30.0% | |
| CATATTCAAACCTAGATCTT+TGG | + | chr4_2:8779935-8779954 | Msa0587290:intron | 30.0% | |
| ACCTAGATCTTTGGTTAAAT+CGG | + | chr4_2:8779944-8779963 | Msa0587290:intron | 30.0% | |
| CTTGAATATACAACTGGATT+TGG | + | chr4_2:8780115-8780134 | Msa0587290:intron | 30.0% | |
| TCCTAACATAGTGAAATCTT+GGG | - | chr4_2:8780362-8780381 | None:intergenic | 30.0% | |
| GTCCTAAGATAGTGAATATA+CGG | - | chr4_2:8780385-8780404 | None:intergenic | 30.0% | |
| !! | GGTATGTTTGATTTGCAATT+AGG | - | chr4_2:8780434-8780453 | None:intergenic | 30.0% |
| GAAAAAGAGTGATTAAGGTA+GGG | - | chr4_2:8780455-8780474 | None:intergenic | 30.0% | |
| TGAAAAAGAGTGATTAAGGT+AGG | - | chr4_2:8780456-8780475 | None:intergenic | 30.0% | |
| TATTCCTTTGACTGAAATCA+AGG | - | chr4_2:8780687-8780706 | None:intergenic | 30.0% | |
| CTTAGTCTGTTTACCATATT+GGG | + | chr4_2:8780867-8780886 | Msa0587290:intron | 30.0% | |
| ! | GATCTTTTCACATTGAAGAT+TGG | - | chr4_2:8781187-8781206 | None:intergenic | 30.0% |
| AAAGATCATCAATAATCGCA+CGG | + | chr4_2:8781200-8781219 | Msa0587290:CDS | 30.0% | |
| AAATCTTACAGCATCTTTGT+GGG | - | chr4_2:8781294-8781313 | None:intergenic | 30.0% | |
| AAAATCTTACAGCATCTTTG+TGG | - | chr4_2:8781295-8781314 | None:intergenic | 30.0% | |
| GGTGAGAATTTCTTTGATAA+TGG | + | chr4_2:8781469-8781488 | Msa0587290:CDS | 30.0% | |
| TTCATCAATCTTCTGTAGTA+GGG | - | chr4_2:8781516-8781535 | None:intergenic | 30.0% | |
| ATTCATCAATCTTCTGTAGT+AGG | - | chr4_2:8781517-8781536 | None:intergenic | 30.0% | |
| TGTATGGCTTGAAATTTGAA+AGG | - | chr4_2:8781646-8781665 | None:intergenic | 30.0% | |
| TATATCACCTACTAGAATGT+GGG | - | chr4_2:8781732-8781751 | None:intergenic | 30.0% | |
| ATATATCACCTACTAGAATG+TGG | - | chr4_2:8781733-8781752 | None:intergenic | 30.0% | |
| GAAAATATTGTAAAGGAGGG+TGG | - | chr4_2:8779076-8779095 | None:intergenic | 35.0% | |
| CTGGGAAAATATTGTAAAGG+AGG | - | chr4_2:8779080-8779099 | None:intergenic | 35.0% | |
| GAGCTGGGAAAATATTGTAA+AGG | - | chr4_2:8779083-8779102 | None:intergenic | 35.0% | |
| ! | TAGATGTTTTCAGAACTGTG+AGG | - | chr4_2:8779373-8779392 | None:intergenic | 35.0% |
| !! | TCACAGTTCTGAAAACATCT+AGG | + | chr4_2:8779372-8779391 | Msa0587290:CDS | 35.0% |
| CTTGTTCTTATGAACACACA+TGG | + | chr4_2:8779491-8779510 | Msa0587290:CDS | 35.0% | |
| GTACGAAAAGGATATCTAGT+TGG | - | chr4_2:8779821-8779840 | None:intergenic | 35.0% | |
| TCCGATTTAACCAAAGATCT+AGG | - | chr4_2:8779948-8779967 | None:intergenic | 35.0% | |
| ATATACAACTGGATTTGGGA+TGG | + | chr4_2:8780120-8780139 | Msa0587290:intron | 35.0% | |
| TACAACTGATCGAGCAATTA+TGG | + | chr4_2:8780193-8780212 | Msa0587290:intron | 35.0% | |
| ACAACTGATCGAGCAATTAT+GGG | + | chr4_2:8780194-8780213 | Msa0587290:intron | 35.0% | |
| TATGGGTTCAAATCTAGTGT+TGG | + | chr4_2:8780211-8780230 | Msa0587290:intron | 35.0% | |
| CCTAACATAGTGAAATCTTG+GGG | - | chr4_2:8780361-8780380 | None:intergenic | 35.0% | |
| GTCCTAACATAGTGAAATCT+TGG | - | chr4_2:8780363-8780382 | None:intergenic | 35.0% | |
| GACCGTATATTCACTATCTT+AGG | + | chr4_2:8780380-8780399 | Msa0587290:intron | 35.0% | |
| GCTTAGTCTGTTTACCATAT+TGG | + | chr4_2:8780866-8780885 | Msa0587290:intron | 35.0% | |
| TTCAAAGGAGAGAGAAAAGA+CGG | + | chr4_2:8781154-8781173 | Msa0587290:CDS | 35.0% | |
| TAATGCCACAAAGAAAGTAG+TGG | + | chr4_2:8781315-8781334 | Msa0587290:CDS | 35.0% | |
| TTGGTACTTGATCAGATCAA+TGG | + | chr4_2:8781448-8781467 | Msa0587290:CDS | 35.0% | |
| ATATCACCTACTAGAATGTG+GGG | - | chr4_2:8781731-8781750 | None:intergenic | 35.0% | |
| ! | TGTTTTCAGAACTGTGAGGT+TGG | - | chr4_2:8779369-8779388 | None:intergenic | 40.0% |
| !! | TCTAGGTTTTTCAGTGGTGA+TGG | + | chr4_2:8779389-8779408 | Msa0587290:CDS | 40.0% |
| !! | CTAGGTTTTTCAGTGGTGAT+GGG | + | chr4_2:8779390-8779409 | Msa0587290:CDS | 40.0% |
| TCTTCCTTATCACGTGTGTT+TGG | - | chr4_2:8779470-8779489 | None:intergenic | 40.0% | |
| AGTACATACCTTTCTACGCA+AGG | - | chr4_2:8779531-8779550 | None:intergenic | 40.0% | |
| !!! | CTCACCGATTCAGATTTTGT+TGG | + | chr4_2:8779629-8779648 | Msa0587290:intron | 40.0% |
| !!! | TCACGCATTTTAGTTCTACG+CGG | - | chr4_2:8779867-8779886 | None:intergenic | 40.0% |
| CCCCAAGATTTCACTATGTT+AGG | + | chr4_2:8780358-8780377 | Msa0587290:intron | 40.0% | |
| CTCAAACTGTTCACGCAAAA+CGG | - | chr4_2:8780407-8780426 | None:intergenic | 40.0% | |
| ! | TTTTGCGTGAACAGTTTGAG+AGG | + | chr4_2:8780407-8780426 | Msa0587290:intron | 40.0% |
| TGCACCTTGATTTCAGTCAA+AGG | + | chr4_2:8780680-8780699 | Msa0587290:intron | 40.0% | |
| TTAGTCCCCTCAATTACCAT+GGG | + | chr4_2:8780838-8780857 | Msa0587290:intron | 40.0% | |
| CTGTTTACCATATTGGGCAT+AGG | + | chr4_2:8780873-8780892 | Msa0587290:intron | 40.0% | |
| AACCAAGTCTTCATCAACGA+TGG | + | chr4_2:8781125-8781144 | Msa0587290:CDS | 40.0% | |
| ACCAAGTCTTCATCAACGAT+GGG | + | chr4_2:8781126-8781145 | Msa0587290:CDS | 40.0% | |
| GTCAAGAATGACCATAACAG+TGG | + | chr4_2:8781222-8781241 | Msa0587290:CDS | 40.0% | |
| AAGAATGACCATAACAGTGG+AGG | + | chr4_2:8781225-8781244 | Msa0587290:CDS | 40.0% | |
| TTTACCGAGCATAACACTAG+TGG | - | chr4_2:8781368-8781387 | None:intergenic | 40.0% | |
| GCAAAGGACACATCAAAATC+AGG | - | chr4_2:8781415-8781434 | None:intergenic | 40.0% | |
| ! | TTTTGATGTGTCCTTTGCCA+TGG | + | chr4_2:8781417-8781436 | Msa0587290:CDS | 40.0% |
| TTTGATGTGTCCTTTGCCAT+GGG | + | chr4_2:8781418-8781437 | Msa0587290:CDS | 40.0% | |
| AAGTACCAAAACCAATCCCA+TGG | - | chr4_2:8781437-8781456 | None:intergenic | 40.0% | |
| TAATGGGACCATTGAAACCT+CGG | + | chr4_2:8781486-8781505 | Msa0587290:CDS | 40.0% | |
| GATAATCCCCACATTCTAGT+AGG | + | chr4_2:8781722-8781741 | Msa0587290:three_prime_UTR | 40.0% | |
| ! | GTAAGGGACAACTCGTTTTC+CGG | + | chr4_2:8779429-8779448 | Msa0587290:CDS | 45.0% |
| !! | GTTTTCCGGTTTGACTCGTA+TGG | + | chr4_2:8779443-8779462 | Msa0587290:CDS | 45.0% |
| TTGGTCCATACGAGTCAAAC+CGG | - | chr4_2:8779451-8779470 | None:intergenic | 45.0% | |
| TGGACCAAACACACGTGATA+AGG | + | chr4_2:8779463-8779482 | Msa0587290:CDS | 45.0% | |
| TCTTCTCACCTTGCGTAGAA+AGG | + | chr4_2:8779520-8779539 | Msa0587290:CDS | 45.0% | |
| CTTAGTCCCCTCAATTACCA+TGG | + | chr4_2:8780837-8780856 | Msa0587290:intron | 45.0% | |
| CTCTTAGCCTATGCCCAATA+TGG | - | chr4_2:8780883-8780902 | None:intergenic | 45.0% | |
| ! | TCCCATCGTTGATGAAGACT+TGG | - | chr4_2:8781130-8781149 | None:intergenic | 45.0% |
| AGTCTTCATCAACGATGGGA+AGG | + | chr4_2:8781130-8781149 | Msa0587290:CDS | 45.0% | |
| CAACGATGGGAAGGATTCAA+AGG | + | chr4_2:8781139-8781158 | Msa0587290:CDS | 45.0% | |
| ATCGTGTACCTCCACTGTTA+TGG | - | chr4_2:8781236-8781255 | None:intergenic | 45.0% | |
| ! | GTGTGGAGTACCTCATTGAA+GGG | + | chr4_2:8781263-8781282 | Msa0587290:CDS | 45.0% |
| CTCAGCCACTACTTTCTTTG+TGG | - | chr4_2:8781323-8781342 | None:intergenic | 45.0% | |
| CAAAACCAATCCCATGGCAA+AGG | - | chr4_2:8781431-8781450 | None:intergenic | 45.0% | |
| !!! | CTTTGCCATGGGATTGGTTT+TGG | + | chr4_2:8781429-8781448 | Msa0587290:CDS | 45.0% |
| !! | AAAAAATATTTATACATATT+TGG | + | chr4_2:8779767-8779786 | Msa0587290:intron | 5.0% |
| !! | AAATTAAATAAATATGTTAT+TGG | - | chr4_2:8780092-8780111 | None:intergenic | 5.0% |
| CACCACCCATGGTAATTGAG+GGG | - | chr4_2:8780846-8780865 | None:intergenic | 50.0% | |
| CCACCACCCATGGTAATTGA+GGG | - | chr4_2:8780847-8780866 | None:intergenic | 50.0% | |
| GCACAAGACGCACTAAGGAA+AGG | - | chr4_2:8780969-8780988 | None:intergenic | 50.0% | |
| CTCTAGCACAAGACGCACTA+AGG | - | chr4_2:8780974-8780993 | None:intergenic | 50.0% | |
| ! | CAATGAGGTACTCCACACCT+GGG | - | chr4_2:8781261-8781280 | None:intergenic | 50.0% |
| ! | TCAATGAGGTACTCCACACC+TGG | - | chr4_2:8781262-8781281 | None:intergenic | 50.0% |
| ! | GGTGTGGAGTACCTCATTGA+AGG | + | chr4_2:8781262-8781281 | Msa0587290:CDS | 50.0% |
| GTGGGAAACACCCTTCAATG+AGG | - | chr4_2:8781276-8781295 | None:intergenic | 50.0% | |
| AGTGGCTGAGATTCGTCGTA+AGG | + | chr4_2:8781333-8781352 | Msa0587290:CDS | 50.0% | |
| CGAGCATAACACTAGTGGTG+GGG | - | chr4_2:8781363-8781382 | None:intergenic | 50.0% | |
| CCGAGCATAACACTAGTGGT+GGG | - | chr4_2:8781364-8781383 | None:intergenic | 50.0% | |
| CCCACCACTAGTGTTATGCT+CGG | + | chr4_2:8781361-8781380 | Msa0587290:CDS | 50.0% | |
| ACCGAGCATAACACTAGTGG+TGG | - | chr4_2:8781365-8781384 | None:intergenic | 50.0% | |
| TGTGTCCTTTGCCATGGGAT+TGG | + | chr4_2:8781423-8781442 | Msa0587290:CDS | 50.0% | |
| GTCCCCTCAATTACCATGGG+TGG | + | chr4_2:8780841-8780860 | Msa0587290:intron | 55.0% | |
| CCCTCAATTACCATGGGTGG+TGG | + | chr4_2:8780844-8780863 | Msa0587290:intron | 55.0% | |
| GCCACCACCCATGGTAATTG+AGG | - | chr4_2:8780848-8780867 | None:intergenic | 55.0% | |
| ACAGACTAAGCCACCACCCA+TGG | - | chr4_2:8780857-8780876 | None:intergenic | 55.0% | |
| ! | GTGGAGGTACACGATAACCC+AGG | + | chr4_2:8781241-8781260 | Msa0587290:CDS | 55.0% |
| GGTACACGATAACCCAGGTG+TGG | + | chr4_2:8781246-8781265 | Msa0587290:CDS | 55.0% | |
| GGCTGAGATTCGTCGTAAGG+TGG | + | chr4_2:8781336-8781355 | Msa0587290:CDS | 55.0% | |
| AGGGTGCACCGAGGTTTCAA+TGG | - | chr4_2:8781497-8781516 | None:intergenic | 55.0% | |
| TTCTGTAGTAGGGTGCACCG+AGG | - | chr4_2:8781506-8781525 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 8779071 | 8781846 | 8779071 | ID=Msa0587290;Name=Msa0587290 |
| chr4_2 | mRNA | 8779071 | 8781846 | 8779071 | ID=Msa0587290-mRNA-1;Parent=Msa0587290;Name=Msa0587290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=243|1|1|1|1|1|2|315|211 |
| chr4_2 | exon | 8779071 | 8779541 | 8779071 | ID=Msa0587290-mRNA-1:exon:2399;Parent=Msa0587290-mRNA-1 |
| chr4_2 | exon | 8781124 | 8781846 | 8781124 | ID=Msa0587290-mRNA-1:exon:2400;Parent=Msa0587290-mRNA-1 |
| chr4_2 | five_prime_UTR | 8779071 | 8779313 | 8779071 | ID=Msa0587290-mRNA-1:five_prime_utr;Parent=Msa0587290-mRNA-1 |
| chr4_2 | CDS | 8779314 | 8779541 | 8779314 | ID=Msa0587290-mRNA-1:cds;Parent=Msa0587290-mRNA-1 |
| chr4_2 | CDS | 8781124 | 8781531 | 8781124 | ID=Msa0587290-mRNA-1:cds;Parent=Msa0587290-mRNA-1 |
| chr4_2 | three_prime_UTR | 8781532 | 8781846 | 8781532 | ID=Msa0587290-mRNA-1:three_prime_utr;Parent=Msa0587290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
