AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336320 MtrunA17_Chr2g0325361 61.378 624 192 5 5 594 469 1077 0.0 620
Msa0336320 MtrunA17_Chr2g0325361 45.961 359 169 2 1 334 349 707 1.14e-65 232
Msa0336320 MtrunA17_Chr2g0325361 39.706 408 188 6 2 356 252 654 1.44e-49 185
Msa0336320 MtrunA17_Chr2g0325361 42.966 263 115 1 2 229 550 812 4.76e-40 157
Msa0336320 MtrunA17_Chr2g0325361 32.627 236 120 4 111 325 239 456 1.07e-15 80.9
Msa0336320 MtrunA17_Chr2g0325661 56.129 620 231 5 9 594 264 876 0.0 562
Msa0336320 MtrunA17_Chr2g0325661 45.249 221 86 3 2 208 397 596 4.67e-27 116
Msa0336320 MtrunA17_Chr2g0325661 35.821 201 107 4 169 355 224 416 6.65e-13 72.0
Msa0336320 MtrunA17_Chr6g0471251 50.891 617 255 8 15 594 162 767 2.75e-165 490
Msa0336320 MtrunA17_Chr6g0471251 40.909 220 102 2 2 207 281 486 1.62e-22 102
Msa0336320 MtrunA17_Chr2g0325641 81.928 332 25 3 14 331 1 311 2.14e-164 471
Msa0336320 MtrunA17_Chr2g0325641 41.063 207 80 3 1 165 100 306 1.76e-26 110
Msa0336320 MtrunA17_Chr2g0325641 39.869 153 71 2 1 153 177 308 1.29e-14 75.5
Msa0336320 MtrunA17_Chr2g0325611 56.746 504 176 6 127 595 95 591 1.22e-163 479
Msa0336320 MtrunA17_Chr2g0325611 37.745 204 104 4 44 235 117 309 1.42e-21 99.0
Msa0336320 MtrunA17_Chr2g0325611 41.579 190 88 3 19 208 144 310 2.23e-21 98.2
Msa0336320 MtrunA17_Chr2g0325611 38.333 180 102 2 1 180 140 310 1.03e-16 83.6
Msa0336320 MtrunA17_Chr2g0325611 40.496 121 72 0 8 128 208 328 1.18e-13 73.9
Msa0336320 MtrunA17_Chr2g0325611 35.119 168 74 3 2 162 181 320 9.77e-11 64.7
Msa0336320 MtrunA17_Chr2g0325351 54.713 541 219 8 77 595 153 689 2.26e-158 469
Msa0336320 MtrunA17_Chr2g0325351 42.211 199 91 4 4 202 229 403 7.34e-20 94.0
Msa0336320 MtrunA17_Chr2g0325351 39.153 189 90 2 2 179 241 415 1.54e-16 83.2
Msa0336320 MtrunA17_Chr2g0325631 90.566 265 19 1 336 594 1 265 3.08e-155 446
Msa0336320 MtrunA17_Chr2g0325231 52.197 569 186 7 2 504 334 882 1.43e-154 466
Msa0336320 MtrunA17_Chr2g0325231 42.136 337 155 5 43 340 204 539 2.04e-42 163
Msa0336320 MtrunA17_Chr2g0325231 41.743 218 117 1 1 208 484 701 4.12e-30 126
Msa0336320 MtrunA17_Chr2g0325231 31.935 310 142 7 87 327 140 449 7.27e-17 84.7
Msa0336320 MtrunA17_Chr2g0325621 52.941 544 200 8 77 594 147 660 8.82e-148 441
Msa0336320 MtrunA17_Chr2g0325621 33.951 162 91 2 3 150 266 425 1.57e-11 67.4
Msa0336320 MtrunA17_Chr2g0325321 58.921 482 163 3 14 495 310 756 9.73e-144 434
Msa0336320 MtrunA17_Chr2g0325321 41.781 292 142 2 2 265 312 603 1.97e-41 160
Msa0336320 MtrunA17_Chr2g0325321 46.725 229 122 0 1 229 367 595 2.86e-40 156
Msa0336320 MtrunA17_Chr2g0325321 33.080 263 144 4 86 334 197 441 7.86e-14 74.7
Msa0336320 MtrunA17_Chr2g0325811 49.149 529 247 4 82 593 307 830 5.85e-139 424
Msa0336320 MtrunA17_Chr2g0325811 33.745 243 123 3 13 217 336 578 1.20e-21 99.8
Msa0336320 MtrunA17_Chr2g0325711 46.630 549 245 4 75 575 270 818 6.67e-138 421
Msa0336320 MtrunA17_Chr2g0325711 36.232 207 128 1 2 208 351 553 5.95e-25 110
Msa0336320 MtrunA17_Chr2g0325711 30.108 279 143 4 101 334 167 438 6.53e-16 81.6
Msa0336320 MtrunA17_Chr5g0434761 75.564 266 59 1 336 595 1 266 6.27e-137 399
Msa0336320 MtrunA17_Chr2g0280141 46.886 578 286 8 27 594 251 817 1.53e-134 412
Msa0336320 MtrunA17_Chr2g0325861 45.102 541 258 6 2 513 311 841 2.58e-112 355
Msa0336320 MtrunA17_Chr2g0325861 39.329 328 174 3 16 336 259 568 1.85e-36 145
Msa0336320 MtrunA17_Chr2g0325861 36.704 267 152 2 82 338 269 528 3.73e-23 104
Msa0336320 MtrunA17_Chr5g0434751 67.029 276 63 2 84 331 1 276 9.21e-97 297
Msa0336320 MtrunA17_Chr5g0434751 41.985 262 117 4 2 228 3 264 2.21e-29 118
Msa0336320 MtrunA17_Chr2g0325701 47.241 453 201 9 69 495 147 587 1.56e-96 307
Msa0336320 MtrunA17_Chr2g0325701 36.863 255 132 5 8 234 158 411 2.82e-24 107
Msa0336320 MtrunA17_Chr2g0325701 38.272 162 86 1 2 149 249 410 1.99e-15 79.7
Msa0336320 MtrunA17_Chr5g0416271 48.295 352 132 4 166 495 157 480 1.57e-84 272
Msa0336320 MtrunA17_Chr5g0416271 41.919 198 71 4 13 181 145 327 4.66e-23 102
Msa0336320 MtrunA17_Chr2g0325691 47.692 390 137 6 2 325 322 710 9.34e-75 253
Msa0336320 MtrunA17_Chr2g0325691 43.085 376 147 6 2 325 294 654 1.31e-52 192
Msa0336320 MtrunA17_Chr2g0325691 38.835 412 167 7 1 328 219 629 2.61e-47 177
Msa0336320 MtrunA17_Chr2g0325691 46.416 293 141 5 39 328 207 486 1.58e-41 160
Msa0336320 MtrunA17_Chr2g0325691 37.681 345 154 10 8 325 146 456 2.06e-28 120
Msa0336320 MtrunA17_Chr2g0325691 42.925 212 93 1 2 213 534 717 5.70e-26 113
Msa0336320 MtrunA17_Chr2g0333341 42.786 402 175 7 136 537 276 622 3.52e-72 243
Msa0336320 MtrunA17_Chr2g0333341 43.429 175 78 5 15 188 295 449 1.67e-18 89.4
Msa0336320 MtrunA17_Chr2g0325331 72.903 155 42 0 336 490 1 155 6.10e-66 213
Msa0336320 MtrunA17_Chr2g0325281 49.235 327 131 3 5 331 301 592 5.72e-65 224
Msa0336320 MtrunA17_Chr2g0325281 40.728 302 116 3 82 334 252 539 2.58e-42 161
Msa0336320 MtrunA17_Chr2g0325281 33.460 263 143 4 86 334 197 441 8.46e-21 96.7
Msa0336320 MtrunA17_Chr2g0325281 42.222 135 64 1 2 136 466 586 5.48e-15 78.2
Msa0336320 MtrunA17_Chr2g0332961 44.000 375 145 9 103 470 37 353 8.35e-64 213
Msa0336320 MtrunA17_Chr2g0325761 47.041 338 151 4 9 325 259 589 2.50e-62 218
Msa0336320 MtrunA17_Chr2g0325761 41.304 276 113 3 2 235 322 590 2.09e-36 144
Msa0336320 MtrunA17_Chr2g0325761 45.815 227 88 3 2 214 392 597 1.63e-33 135
Msa0336320 MtrunA17_Chr2g0325761 59.000 100 39 2 491 590 592 689 1.85e-25 111
Msa0336320 MtrunA17_Chr2g0325761 30.744 309 133 4 107 334 220 528 4.83e-19 91.3
Msa0336320 MtrunA17_Chr2g0325761 32.768 177 91 1 3 179 456 604 4.47e-12 68.9
Msa0336320 MtrunA17_Chr2g0325291 57.143 203 81 1 353 549 4 206 7.68e-61 201
Msa0336320 MtrunA17_Chr2g0332951 48.980 245 80 7 255 495 2 205 1.92e-54 184
Msa0336320 MtrunA17_Chr2g0325771 65.680 169 48 2 329 495 10 170 1.31e-51 175
Msa0336320 MtrunA17_Chr2g0325241 40.122 329 164 3 92 417 121 419 2.87e-51 182
Msa0336320 MtrunA17_Chr2g0325241 37.500 208 127 1 8 212 121 328 4.30e-23 102
Msa0336320 MtrunA17_Chr2g0325241 39.521 167 98 1 1 164 142 308 5.91e-18 86.7
Msa0336320 MtrunA17_Chr2g0325311 73.684 114 26 1 482 595 11 120 1.88e-48 164
Msa0336320 MtrunA17_Chr2g0325271 73.737 99 26 0 496 594 45 143 3.52e-42 148
Msa0336320 MtrunA17_Chr8g0361651 36.896 393 203 10 216 595 50 410 1.59e-40 154
Msa0336320 MtrunA17_Chr3g0140591 54.321 162 73 1 334 495 7 167 6.75e-40 143
Msa0336320 MtrunA17_Chr2g0325221 37.942 311 179 2 29 325 275 585 2.89e-39 153
Msa0336320 MtrunA17_Chr2g0325221 38.567 293 169 3 9 301 308 589 5.33e-31 128
Msa0336320 MtrunA17_Chr2g0325221 37.597 258 150 2 16 262 343 600 1.75e-28 120
Msa0336320 MtrunA17_Chr2g0325221 60.204 98 38 1 496 593 603 699 2.25e-26 114
Msa0336320 MtrunA17_Chr2g0325221 38.914 221 117 4 1 207 370 586 1.36e-24 108
Msa0336320 MtrunA17_Chr2g0325221 35.470 234 140 2 103 325 272 505 2.40e-17 85.9
Msa0336320 MtrunA17_Chr2g0325221 37.281 228 129 4 107 325 269 491 3.62e-17 85.5
Msa0336320 MtrunA17_Chr7g0235901 51.515 198 79 2 53 250 131 311 3.89e-35 134
Msa0336320 MtrunA17_Chr7g0235901 46.409 181 86 2 103 279 132 305 8.05e-26 108
Msa0336320 MtrunA17_Chr7g0235901 40.909 198 99 2 1 194 128 311 1.29e-23 101
Msa0336320 MtrunA17_Chr7g0235901 37.968 187 105 2 145 327 132 311 4.92e-19 88.2
Msa0336320 MtrunA17_Chr7g0235901 40.994 161 78 5 179 327 100 255 3.47e-13 70.9
Msa0336320 MtrunA17_Chr2g0325651 56.494 154 43 2 2 134 238 388 4.69e-35 136
Msa0336320 MtrunA17_Chr2g0325651 39.113 248 135 5 33 265 140 386 9.89e-25 106
Msa0336320 MtrunA17_Chr2g0325651 37.302 252 131 4 3 230 138 386 8.29e-23 100
Msa0336320 MtrunA17_Chr2g0325651 39.779 181 85 3 1 174 223 386 3.58e-20 92.8
Msa0336320 MtrunA17_Chr2g0325651 38.462 143 74 2 196 331 236 371 4.74e-13 71.2
Msa0336320 MtrunA17_Chr4g0024061 38.645 251 111 5 353 589 427 648 2.22e-34 139
Msa0336320 MtrunA17_Chr2g0325721 44.082 245 116 2 33 277 278 501 3.12e-30 124
Msa0336320 MtrunA17_Chr2g0325721 38.596 228 112 1 1 200 274 501 2.14e-23 103
Msa0336320 MtrunA17_Chr2g0325721 39.130 276 143 4 38 305 243 501 6.06e-23 102
Msa0336320 MtrunA17_Chr2g0325721 36.975 238 141 2 108 338 243 478 2.02e-16 82.4
Msa0336320 MtrunA17_Chr2g0325721 34.884 215 122 3 142 342 251 461 1.80e-12 70.1
Msa0336320 MtrunA17_Chr4g0044221 31.746 315 172 8 130 431 6 290 1.12e-24 105
Msa0336320 MtrunA17_Chr2g0325751 48.649 148 56 4 192 338 3 131 2.21e-24 99.8
Msa0336320 MtrunA17_Chr2g0325751 38.636 132 74 1 79 210 2 126 2.50e-14 70.9
Msa0336320 MtrunA17_Chr2g0325751 42.017 119 62 1 110 228 5 116 9.35e-14 69.3
Msa0336320 MtrunA17_Chr2g0325751 42.742 124 57 2 136 259 3 112 1.25e-12 65.9
Msa0336320 MtrunA17_Chr2g0325751 39.316 117 64 1 42 158 7 116 2.64e-12 65.1
Msa0336320 MtrunA17_Chr2g0325751 38.261 115 64 1 14 128 7 114 2.19e-11 62.4
Msa0336320 MtrunA17_Chr7g0235921 67.010 97 25 2 414 504 1 96 1.03e-19 84.7
Msa0336320 MtrunA17_Chr2g0325261 49.091 110 52 1 115 224 201 306 1.09e-17 84.3
Msa0336320 MtrunA17_Chr2g0325261 52.500 80 38 0 5 84 227 306 2.71e-12 68.2
Msa0336320 MtrunA17_Chr2g0325341 49.091 110 52 1 115 224 201 306 1.09e-17 84.3
Msa0336320 MtrunA17_Chr2g0325341 52.500 80 38 0 5 84 227 306 2.71e-12 68.2
Msa0336320 MtrunA17_Chr2g0325211 38.202 178 98 2 149 326 2 167 1.70e-16 78.2
Msa0336320 MtrunA17_Chr2g0325791 39.355 155 82 3 43 193 24 170 4.64e-16 79.7
Msa0336320 MtrunA17_Chr2g0325791 41.791 134 68 1 1 134 37 160 1.78e-15 77.8
Msa0336320 MtrunA17_Chr2g0325791 37.681 138 61 3 145 278 41 157 1.42e-14 75.1
Msa0336320 MtrunA17_Chr2g0325791 38.583 127 73 2 85 207 24 149 2.07e-13 71.6
Msa0336320 MtrunA17_Chr2g0325791 39.552 134 76 2 99 228 24 156 2.42e-11 65.5
Msa0336320 MtrunA17_Chr2g0325791 36.242 149 78 3 72 220 38 169 4.90e-11 64.3
Msa0336320 MtrunA17_Chr2g0325781 48.598 107 50 2 43 145 197 302 2.54e-15 77.0
Msa0336320 MtrunA17_Chr2g0325781 51.685 89 39 1 103 187 214 302 2.63e-14 74.3
Msa0336320 MtrunA17_Chr5g0434741 37.037 189 94 5 32 213 125 295 4.87e-12 67.4
Msa0336320 MtrunA17_Chr2g0325731 58.929 56 23 0 84 139 1 56 1.27e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336320 AT5G27220.1 26.824 466 298 14 34 494 373 800 1.65e-11 68.2
Msa0336320 AT5G27220.3 26.824 466 298 14 34 494 373 800 1.65e-11 68.2
Msa0336320 AT5G27220.4 26.824 466 298 14 34 494 373 800 2.08e-11 67.8
Msa0336320 AT5G27220.2 26.824 466 298 14 34 494 373 800 2.08e-11 67.8

Find 101 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAGTTATCTTTATTTCT+TGG 0.198475 2_4:+55706481 Msa0336320:three_prime_UTR
GCCATCAAGTTGCTTCTCTT+TGG 0.237832 2_4:-55703177 None:intergenic
CACAAATCAGTCGGGCATTC+TGG 0.239397 2_4:-55706011 None:intergenic
GAAAATTCTTTGGCTGTTCT+TGG 0.258100 2_4:+55705249 Msa0336320:CDS
CGTGGAGCTGTTTGGAAGCC+TGG 0.258716 2_4:+55705368 Msa0336320:CDS
AGAAAATACTGAAAATTCTT+TGG 0.265178 2_4:+55705239 Msa0336320:CDS
TCAAAAGATAACAAACTTAT+AGG 0.279836 2_4:+55703302 Msa0336320:CDS
AGATCCATCAAAATTTGTTT+TGG 0.283657 2_4:+55705044 Msa0336320:CDS
AACTTGTAACTACTATTGTT+TGG 0.296252 2_4:+55706369 Msa0336320:three_prime_UTR
TGGACTCAAGCTCCTTCATT+TGG 0.314622 2_4:-55702989 None:intergenic
TTGACTCAAGCTCCTTCATT+TGG 0.318173 2_4:-55703409 None:intergenic
TCAATACCTGCTCCTCCATT+TGG 0.333415 2_4:-55702947 None:intergenic
TTGACTCTAATTCCTTCAAT+TGG 0.338034 2_4:-55703283 None:intergenic
AAAATTTGATGGACAAATAA+AGG 0.345294 2_4:+55703670 Msa0336320:CDS
GTCTTCAAGTTGCTTCGCTT+TGG 0.345541 2_4:-55703009 None:intergenic
ATTTGAGGATCTGCTTCTTA+AGG 0.354835 2_4:+55706247 Msa0336320:CDS
TTACCCCGTTTCTTTGCATT+AGG 0.361827 2_4:-55706334 None:intergenic
GTTGTTGTAGCAGATAGATT+TGG 0.368863 2_4:-55705134 None:intergenic
GACTGTCCTACAATGCATTT+CGG 0.382566 2_4:+55706211 Msa0336320:CDS
ACTTGTAACTACTATTGTTT+GGG 0.393650 2_4:+55706370 Msa0336320:three_prime_UTR
AAGAAGAACCTTGATTTCAA+TGG 0.397469 2_4:-55706058 None:intergenic
ACAACCTAATGCAAAGAAAC+GGG 0.400707 2_4:+55706330 Msa0336320:three_prime_UTR
TTGAGTCAAGCTCCCTCATT+CGG 0.403790 2_4:-55702779 None:intergenic
GCTATTGAAAGGACAACTTC+AGG 0.410723 2_4:+55703145 Msa0336320:CDS
CGTTATTCCACTGTGTCAAA+AGG 0.410783 2_4:+55705083 Msa0336320:CDS
TTGATTCATGCTCCTGCAAT+CGG 0.412660 2_4:-55703031 None:intergenic
TCCAAAGAGAAGCAACTTGA+TGG 0.413296 2_4:+55703176 Msa0336320:CDS
GAAATTTCCGTGGAGCTGTT+TGG 0.418240 2_4:+55705360 Msa0336320:CDS
TGTAATCCGAAATGCATTGT+AGG 0.425499 2_4:-55706217 None:intergenic
GAAGCTAGAGCATGATTTGA+AGG 0.429517 2_4:+55705206 Msa0336320:CDS
ACTAGCAATTTCTTCATCTC+TGG 0.433462 2_4:-55706183 None:intergenic
GTTGTTTGAAATACAAGTTA+AGG 0.433928 2_4:+55702851 Msa0336320:CDS
AACAACCTAATGCAAAGAAA+CGG 0.436437 2_4:+55706329 Msa0336320:three_prime_UTR
TTAAAAGAAAAGCAGTTTGA+AGG 0.444691 2_4:+55703617 Msa0336320:CDS
AACCTTGATTTCAATGGAGT+TGG 0.448151 2_4:-55706052 None:intergenic
GCAACTTGAAGACCGATTGC+AGG 0.449322 2_4:+55703019 Msa0336320:CDS
ATTCAGTTGTGCATATAACT+TGG 0.456342 2_4:+55705948 Msa0336320:CDS
GAAGTTTGAAACAAAAGAAA+AGG 0.466885 2_4:+55703334 Msa0336320:CDS
GGAATTTGAATGTCAAATGA+TGG 0.469309 2_4:+55703355 Msa0336320:CDS
AACCAACTCCATTGAAATCA+AGG 0.469309 2_4:+55706050 Msa0336320:CDS
TTGATTTGAAGTCCTCAACT+TGG 0.471069 2_4:-55703514 None:intergenic
CTTGAGCTAAAAGCACATAA+AGG 0.471481 2_4:+55706287 Msa0336320:CDS
GGAATTTGAAGGCCAATTGA+AGG 0.477761 2_4:+55703271 Msa0336320:CDS
AATGCAAAGAAACGGGGTAA+TGG 0.480139 2_4:+55706337 Msa0336320:three_prime_UTR
AGAGTATAAGTTCAAAGTAA+AGG 0.481240 2_4:+55703580 Msa0336320:CDS
GTGGAGCTGTTTGGAAGCCT+GGG 0.486544 2_4:+55705369 Msa0336320:CDS
TAAAAGACGATGGAATGAAC+TGG 0.489273 2_4:+55703550 Msa0336320:CDS
CCATCACTTGTCTTTCAAAG+TGG 0.490789 2_4:-55703229 None:intergenic
TTGGACACAAGTGAGAAAAC+TGG 0.495029 2_4:+55704970 Msa0336320:CDS
GGATTACAAACTAGAATTTG+AGG 0.497268 2_4:+55706232 Msa0336320:CDS
AACTGCTCTCACAAATCAGT+CGG 0.510269 2_4:-55706020 None:intergenic
TGAATGCCAAATGGAGGAGC+AGG 0.517572 2_4:+55702941 Msa0336320:CDS
CGATTAAGTCGTACCATTGG+TGG 0.522182 2_4:+55704934 Msa0336320:CDS
GGAGTTTGAATCAAAAGAGA+GGG 0.527207 2_4:+55702914 Msa0336320:CDS
TCAAAAGAGAGAAAGTTTGA+AGG 0.531967 2_4:+55702798 Msa0336320:CDS
CCACTTTGAAAGACAAGTGA+TGG 0.536748 2_4:+55703229 Msa0336320:CDS
CCAACTTGTAGGCAAAATGA+AGG 0.536838 2_4:+55702893 Msa0336320:CDS
GGAATTTGAAGAACAAGTGA+AGG 0.541780 2_4:+55703439 Msa0336320:CDS
TGAAGCTCGAGCGAAGGAGC+TGG 0.541954 2_4:+55703067 Msa0336320:CDS
GAGGGGATTTGAATGCCAAA+TGG 0.542544 2_4:+55702932 Msa0336320:CDS
TGGTGGAACAAGTTTGCAGT+TGG 0.544547 2_4:+55704951 Msa0336320:CDS
TGAAGGTCAAGTGAAGGAGC+AGG 0.546239 2_4:+55702815 Msa0336320:CDS
ATATGCAGTTGAATCTTACA+TGG 0.546667 2_4:+55704906 Msa0336320:intron
TAGATTCCAACTCCTTCACT+TGG 0.549470 2_4:-55703199 None:intergenic
GTTATTCCACTGTGTCAAAA+GGG 0.553830 2_4:+55705084 Msa0336320:CDS
ACTGCTCTCACAAATCAGTC+GGG 0.558430 2_4:-55706019 None:intergenic
AGTGAAGGACATTAAATCAA+AGG 0.559641 2_4:+55703454 Msa0336320:CDS
TAAGTTCAAAGTAAAGGTGA+AGG 0.565515 2_4:+55703586 Msa0336320:CDS
AGGAGTTTGAATCAAAAGAG+AGG 0.566430 2_4:+55702913 Msa0336320:CDS
CTGCAAACTTGTTCCACCAA+TGG 0.566622 2_4:-55704947 None:intergenic
TGATGGCCAAGTGAAGGAGT+TGG 0.567033 2_4:+55703193 Msa0336320:CDS
GCGTGTTGAAAACCAAATGA+AGG 0.568140 2_4:+55703397 Msa0336320:CDS
GCATTGTGAAAGCCAAATGA+AGG 0.570742 2_4:+55702977 Msa0336320:CDS
TGCTATGCACGAAATTTCCG+TGG 0.572144 2_4:+55705350 Msa0336320:CDS
GGACATTAAATCAAAGGAGG+AGG 0.572694 2_4:+55703460 Msa0336320:CDS
GGAATTTGAAGCTCGAGCGA+AGG 0.575237 2_4:+55703061 Msa0336320:CDS
TCAAAATTGAGGCTATTGAA+AGG 0.578553 2_4:+55703134 Msa0336320:CDS
GATCGATTAAGTCGTACCAT+TGG 0.583636 2_4:+55704931 Msa0336320:CDS
GAAGCATTTCGAAAGCATGA+TGG 0.585317 2_4:+55703100 Msa0336320:CDS
TTGTTAAGCATCTTATCAAG+AGG 0.585772 2_4:+55705902 Msa0336320:intron
GGAGCATGAATCAAAGGAGA+AGG 0.587429 2_4:+55703040 Msa0336320:CDS
AGGAGCTCAAATCAAAATTG+AGG 0.589256 2_4:+55703123 Msa0336320:CDS
GGACTTGGTATCAAAACTGA+AGG 0.589908 2_4:+55702746 Msa0336320:CDS
GAAGGAGCTTGAGTCAAAAG+AGG 0.592567 2_4:+55703415 Msa0336320:CDS
ATGAAGAAATTGCTAGTCTG+AGG 0.599505 2_4:+55706189 Msa0336320:CDS
GAGTTTGAATCAAAAGAGAG+GGG 0.602082 2_4:+55702915 Msa0336320:CDS
GCAACTTGATGGCCAAGTGA+AGG 0.602132 2_4:+55703187 Msa0336320:CDS
ATTGCAGGAGCATGAATCAA+AGG 0.606422 2_4:+55703034 Msa0336320:CDS
TGAATGCCAAATGATGGACT+TGG 0.610561 2_4:+55702731 None:intergenic
AAAGTTTGAAGGTCAAGTGA+AGG 0.611491 2_4:+55702809 Msa0336320:CDS
AAATAAAGGAGCCCGAGTCA+AGG 0.611737 2_4:+55703684 Msa0336320:CDS
GAAGGACATTAAATCAAAGG+AGG 0.632909 2_4:+55703457 Msa0336320:CDS
AGCAGCGATTTAAAAGACGA+TGG 0.641163 2_4:+55703540 Msa0336320:CDS
GGAGCTTGAGTCAAAAGAGG+AGG 0.641783 2_4:+55703418 Msa0336320:CDS
CAGGCTTCCAAACAGCTCCA+CGG 0.647974 2_4:-55705367 None:intergenic
GCATTTCGAAAGCATGATGG+AGG 0.653577 2_4:+55703103 Msa0336320:CDS
GGGATTTGAATGCCAAATGG+AGG 0.654030 2_4:+55702935 Msa0336320:CDS
AAACTCTGTTAGCAAAACCC+AGG 0.678318 2_4:-55705386 None:intergenic
CAACCTAATGCAAAGAAACG+GGG 0.689120 2_4:+55706331 Msa0336320:three_prime_UTR
GACACAAGTGAGAAAACTGG+CGG 0.706814 2_4:+55704973 Msa0336320:CDS
TTTGACACAGTGGAATAACG+GGG 0.728582 2_4:-55705080 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGGTTTTACTATAATATTA+TGG + chr2_4:55704012-55704031 Msa0336320:intron 15.0%
!! TCATCAAATTATGAAATATA+TGG - chr2_4:55704303-55704322 None:intergenic 15.0%
!!! TTTACACAAATTTCAATTTT+TGG - chr2_4:55705174-55705193 None:intergenic 15.0%
!! ATAAGAGTTTATCATATTTA+TGG + chr2_4:55705581-55705600 Msa0336320:intron 15.0%
!! TCCATATCAAAATAATTATT+CGG + chr2_4:55705756-55705775 Msa0336320:intron 15.0%
!! TCAAAAGATAACAAACTTAT+AGG + chr2_4:55703302-55703321 Msa0336320:CDS 20.0%
!!! AAAATTTGATGGACAAATAA+AGG + chr2_4:55703670-55703689 Msa0336320:CDS 20.0%
!!! AAAATATTTTTTCCTTGACT+CGG - chr2_4:55703699-55703718 None:intergenic 20.0%
!! AAAATATCATCATCATTAAG+AGG - chr2_4:55703791-55703810 None:intergenic 20.0%
!!! AAATTAGTTTGAAAGTCATT+GGG - chr2_4:55703918-55703937 None:intergenic 20.0%
!!! TACATTTTTATGTATCTCTT+AGG + chr2_4:55703958-55703977 Msa0336320:intron 20.0%
!!! AATTATATTGCAAAAAGTGT+AGG + chr2_4:55704106-55704125 Msa0336320:intron 20.0%
!! TAAATGTACTTTCTATTGTT+GGG - chr2_4:55704342-55704361 None:intergenic 20.0%
!! ATAAATGTACTTTCTATTGT+TGG - chr2_4:55704343-55704362 None:intergenic 20.0%
!!! ATATCCAAAACAAATTTTGA+TGG - chr2_4:55705051-55705070 None:intergenic 20.0%
!! AGAAAATACTGAAAATTCTT+TGG + chr2_4:55705239-55705258 Msa0336320:CDS 20.0%
!!! AATTATTTTGATATGGAATG+TGG - chr2_4:55705753-55705772 None:intergenic 20.0%
!!! TCCGAATAATTATTTTGATA+TGG - chr2_4:55705760-55705779 None:intergenic 20.0%
!! GTTGTTTGAAATACAAGTTA+AGG + chr2_4:55702851-55702870 Msa0336320:CDS 25.0%
! TCAAAAAATAACCAACTTGT+AGG + chr2_4:55702882-55702901 Msa0336320:CDS 25.0%
! TCAAAAAAGAAGGAATTTGA+AGG + chr2_4:55703260-55703279 Msa0336320:CDS 25.0%
!! GAAGTTTGAAACAAAAGAAA+AGG + chr2_4:55703334-55703353 Msa0336320:CDS 25.0%
! AGAGTATAAGTTCAAAGTAA+AGG + chr2_4:55703580-55703599 Msa0336320:CDS 25.0%
! TTAAAAGAAAAGCAGTTTGA+AGG + chr2_4:55703617-55703636 Msa0336320:CDS 25.0%
! TCAATGCTGAAAAAATTTGA+TGG + chr2_4:55703659-55703678 Msa0336320:CDS 25.0%
!!! AAATATTTTTTCCTTGACTC+GGG - chr2_4:55703698-55703717 None:intergenic 25.0%
!! GAGTCAAGGAAAAAATATTT+TGG + chr2_4:55703698-55703717 Msa0336320:CDS 25.0%
!!! TCAAGGAAAAAATATTTTGG+TGG + chr2_4:55703701-55703720 Msa0336320:CDS 25.0%
!!! CAAGGAAAAAATATTTTGGT+GGG + chr2_4:55703702-55703721 Msa0336320:CDS 25.0%
!!! AAGGAAAAAATATTTTGGTG+GGG + chr2_4:55703703-55703722 Msa0336320:CDS 25.0%
! TAGATGAATAAGACATTTAC+CGG - chr2_4:55703738-55703757 None:intergenic 25.0%
!! CAAATTAGTTTGAAAGTCAT+TGG - chr2_4:55703919-55703938 None:intergenic 25.0%
! AGATACATAAAAATGTACAG+GGG - chr2_4:55703955-55703974 None:intergenic 25.0%
! GAGATACATAAAAATGTACA+GGG - chr2_4:55703956-55703975 None:intergenic 25.0%
! AGAGATACATAAAAATGTAC+AGG - chr2_4:55703957-55703976 None:intergenic 25.0%
! AATATTCTGACAAACATTGA+GGG + chr2_4:55704132-55704151 Msa0336320:intron 25.0%
! TTTATGAGTTCATGTACAAA+AGG + chr2_4:55704358-55704377 Msa0336320:intron 25.0%
!!! CTATGTAGTTTTGTATAACA+TGG + chr2_4:55704526-55704545 Msa0336320:intron 25.0%
! TACTAAATATTGGAATGAAC+TGG - chr2_4:55704733-55704752 None:intergenic 25.0%
!!! AGATCCATCAAAATTTGTTT+TGG + chr2_4:55705044-55705063 Msa0336320:CDS 25.0%
!!! ACAAATTTCAATTTTTGGTG+AGG - chr2_4:55705169-55705188 None:intergenic 25.0%
!!! TGCTGCTTTTATCAATTTAT+GGG + chr2_4:55705277-55705296 Msa0336320:CDS 25.0%
!! TTTTAACGAAGATGAAGTTT+TGG + chr2_4:55705311-55705330 Msa0336320:CDS 25.0%
! GATTATCAAATCAAATGAGT+TGG + chr2_4:55705449-55705468 Msa0336320:intron 25.0%
! TATCATATTTATGGTGAACA+TGG + chr2_4:55705590-55705609 Msa0336320:intron 25.0%
! TCAAAATTTGTCAACCATAT+AGG - chr2_4:55705792-55705811 None:intergenic 25.0%
! ATAAGATGCTTAACAAAATC+AGG - chr2_4:55705898-55705917 None:intergenic 25.0%
!! TATATTCCATTTTCACACAT+AGG + chr2_4:55706106-55706125 Msa0336320:intron 25.0%
! AACTTGTAACTACTATTGTT+TGG + chr2_4:55706369-55706388 Msa0336320:three_prime_UTR 25.0%
! ACTTGTAACTACTATTGTTT+GGG + chr2_4:55706370-55706389 Msa0336320:three_prime_UTR 25.0%
! ACTCTGTAAAAAGATGTAAT+TGG + chr2_4:55706431-55706450 Msa0336320:three_prime_UTR 25.0%
!! ACAGAGTTATCTTTATTTCT+TGG + chr2_4:55706481-55706500 Msa0336320:three_prime_UTR 25.0%
TCAAAAGAGAGAAAGTTTGA+AGG + chr2_4:55702798-55702817 Msa0336320:CDS 30.0%
TCAAAATTGAGGCTATTGAA+AGG + chr2_4:55703134-55703153 Msa0336320:CDS 30.0%
TTGACTCTAATTCCTTCAAT+TGG - chr2_4:55703286-55703305 None:intergenic 30.0%
GGAATTTGAATGTCAAATGA+TGG + chr2_4:55703355-55703374 Msa0336320:CDS 30.0%
AGTGAAGGACATTAAATCAA+AGG + chr2_4:55703454-55703473 Msa0336320:CDS 30.0%
!! GAATTTTAAAAGCCAAGTTG+AGG + chr2_4:55703502-55703521 Msa0336320:CDS 30.0%
TAAGTTCAAAGTAAAGGTGA+AGG + chr2_4:55703586-55703605 Msa0336320:CDS 30.0%
!!! AATTTTTTCAGCATTGACTC+AGG - chr2_4:55703656-55703675 None:intergenic 30.0%
!!! AACTCGTGTTTTTTTATCCA+CGG + chr2_4:55703987-55704006 Msa0336320:intron 30.0%
CAATATTCTGACAAACATTG+AGG + chr2_4:55704131-55704150 Msa0336320:intron 30.0%
ATATTCTGACAAACATTGAG+GGG + chr2_4:55704133-55704152 Msa0336320:intron 30.0%
CTAGAAATAGTAGCACTAAT+AGG - chr2_4:55704178-55704197 None:intergenic 30.0%
! TTTTTCACTGCAATCATTCT+AGG - chr2_4:55704489-55704508 None:intergenic 30.0%
! TTTTGTATAACATGGCAGAT+TGG + chr2_4:55704534-55704553 Msa0336320:intron 30.0%
TGAACGTTACAGATAATCTA+GGG - chr2_4:55704678-55704697 None:intergenic 30.0%
TTGAACGTTACAGATAATCT+AGG - chr2_4:55704679-55704698 None:intergenic 30.0%
GCTGCACTTATACTAAATAT+TGG - chr2_4:55704743-55704762 None:intergenic 30.0%
TGTATGACATTGATGAGTTA+CGG - chr2_4:55704765-55704784 None:intergenic 30.0%
ATATGCAGTTGAATCTTACA+TGG + chr2_4:55704906-55704925 Msa0336320:intron 30.0%
!!! CTGCTGCTTTTATCAATTTA+TGG + chr2_4:55705276-55705295 Msa0336320:CDS 30.0%
TCTAAGAAACTAGCAACTTA+TGG - chr2_4:55705549-55705568 None:intergenic 30.0%
TATTTATGGTGAACATGGTA+TGG + chr2_4:55705595-55705614 Msa0336320:intron 30.0%
TTGTTAAGCATCTTATCAAG+AGG + chr2_4:55705902-55705921 Msa0336320:intron 30.0%
ATTCAGTTGTGCATATAACT+TGG + chr2_4:55705948-55705967 Msa0336320:CDS 30.0%
AAGAAGAACCTTGATTTCAA+TGG - chr2_4:55706061-55706080 None:intergenic 30.0%
GGATTACAAACTAGAATTTG+AGG + chr2_4:55706232-55706251 Msa0336320:CDS 30.0%
AACAACCTAATGCAAAGAAA+CGG + chr2_4:55706329-55706348 Msa0336320:three_prime_UTR 30.0%
!! AGGATTTTGAAAACCGAATG+AGG + chr2_4:55702766-55702785 Msa0336320:CDS 35.0%
!! GGATTTTGAAAACCGAATGA+GGG + chr2_4:55702767-55702786 Msa0336320:CDS 35.0%
AAAGTTTGAAGGTCAAGTGA+AGG + chr2_4:55702809-55702828 Msa0336320:CDS 35.0%
AGGAGTTTGAATCAAAAGAG+AGG + chr2_4:55702913-55702932 Msa0336320:CDS 35.0%
GGAGTTTGAATCAAAAGAGA+GGG + chr2_4:55702914-55702933 Msa0336320:CDS 35.0%
GAGTTTGAATCAAAAGAGAG+GGG + chr2_4:55702915-55702934 Msa0336320:CDS 35.0%
AGGAGCTCAAATCAAAATTG+AGG + chr2_4:55703123-55703142 Msa0336320:CDS 35.0%
GGAGTTTGAGTCAAAAAAGA+AGG + chr2_4:55703250-55703269 Msa0336320:CDS 35.0%
GGAATTTGAAGAACAAGTGA+AGG + chr2_4:55703439-55703458 Msa0336320:CDS 35.0%
GAAGGACATTAAATCAAAGG+AGG + chr2_4:55703457-55703476 Msa0336320:CDS 35.0%
GGAGGAACTTGAATCAAAAA+AGG + chr2_4:55703478-55703497 Msa0336320:CDS 35.0%
! TTGATTTGAAGTCCTCAACT+TGG - chr2_4:55703517-55703536 None:intergenic 35.0%
TAAAAGACGATGGAATGAAC+TGG + chr2_4:55703550-55703569 Msa0336320:CDS 35.0%
! TTGGGTGTGATAATGAAATC+TGG - chr2_4:55703900-55703919 None:intergenic 35.0%
!!! TGTTTTTTTATCCACGGCTA+AGG + chr2_4:55703993-55704012 Msa0336320:intron 35.0%
TTATAGTAAAACCTTAGCCG+TGG - chr2_4:55704007-55704026 None:intergenic 35.0%
AGTAGCACTAATAGGACTAA+TGG - chr2_4:55704170-55704189 None:intergenic 35.0%
GTTTCAACATAGACCTTAAC+TGG - chr2_4:55704244-55704263 None:intergenic 35.0%
GAGAGTCTAGACATAAATAG+AGG - chr2_4:55704425-55704444 None:intergenic 35.0%
AGCAAAATAAGCAGTACAAG+TGG + chr2_4:55704452-55704471 Msa0336320:intron 35.0%
TTGCAAAACAAGCTCTTCAT+TGG - chr2_4:55704574-55704593 None:intergenic 35.0%
AATTCTGTCCAGTTGTATAG+AGG - chr2_4:55704617-55704636 None:intergenic 35.0%
AGATAATCTAGGGAAAGTCA+TGG - chr2_4:55704668-55704687 None:intergenic 35.0%
TATTGGAATGAACTGGATCT+TGG - chr2_4:55704726-55704745 None:intergenic 35.0%
! TTTTGACACAGTGGAATAAC+GGG - chr2_4:55705084-55705103 None:intergenic 35.0%
! CTTTTGACACAGTGGAATAA+CGG - chr2_4:55705085-55705104 None:intergenic 35.0%
GTTATTCCACTGTGTCAAAA+GGG + chr2_4:55705084-55705103 Msa0336320:CDS 35.0%
GTTGTTGTAGCAGATAGATT+TGG - chr2_4:55705137-55705156 None:intergenic 35.0%
GAAAATTCTTTGGCTGTTCT+TGG + chr2_4:55705249-55705268 Msa0336320:CDS 35.0%
!!! TTTCAATGGAGTTGGTTTTC+AGG - chr2_4:55706047-55706066 None:intergenic 35.0%
AACCAACTCCATTGAAATCA+AGG + chr2_4:55706050-55706069 Msa0336320:CDS 35.0%
AACCTTGATTTCAATGGAGT+TGG - chr2_4:55706055-55706074 None:intergenic 35.0%
TGCTATCCTATGTGTGAAAA+TGG - chr2_4:55706115-55706134 None:intergenic 35.0%
GTTACTGTATACTTGAACTC+AGG + chr2_4:55706154-55706173 Msa0336320:intron 35.0%
GTATACTTGAACTCAGGATA+AGG + chr2_4:55706160-55706179 Msa0336320:intron 35.0%
ACTAGCAATTTCTTCATCTC+TGG - chr2_4:55706186-55706205 None:intergenic 35.0%
! ATGAAGAAATTGCTAGTCTG+AGG + chr2_4:55706189-55706208 Msa0336320:CDS 35.0%
TGTAATCCGAAATGCATTGT+AGG - chr2_4:55706220-55706239 None:intergenic 35.0%
ATTTGAGGATCTGCTTCTTA+AGG + chr2_4:55706247-55706266 Msa0336320:CDS 35.0%
! CTTGAGCTAAAAGCACATAA+AGG + chr2_4:55706287-55706306 Msa0336320:CDS 35.0%
ACAACCTAATGCAAAGAAAC+GGG + chr2_4:55706330-55706349 Msa0336320:three_prime_UTR 35.0%
! GGACTTGGTATCAAAACTGA+AGG + chr2_4:55702746-55702765 Msa0336320:CDS 40.0%
! CCTTCATTTTGCCTACAAGT+TGG - chr2_4:55702896-55702915 None:intergenic 40.0%
CCAACTTGTAGGCAAAATGA+AGG + chr2_4:55702893-55702912 Msa0336320:CDS 40.0%
GCATTGTGAAAGCCAAATGA+AGG + chr2_4:55702977-55702996 Msa0336320:CDS 40.0%
TTGATTCATGCTCCTGCAAT+CGG - chr2_4:55703034-55703053 None:intergenic 40.0%
! ATTGCAGGAGCATGAATCAA+AGG + chr2_4:55703034-55703053 Msa0336320:CDS 40.0%
! GAAGCATTTCGAAAGCATGA+TGG + chr2_4:55703100-55703119 Msa0336320:CDS 40.0%
GCTATTGAAAGGACAACTTC+AGG + chr2_4:55703145-55703164 Msa0336320:CDS 40.0%
TCCAAAGAGAAGCAACTTGA+TGG + chr2_4:55703176-55703195 Msa0336320:CDS 40.0%
TAGATTCCAACTCCTTCACT+TGG - chr2_4:55703202-55703221 None:intergenic 40.0%
CCATCACTTGTCTTTCAAAG+TGG - chr2_4:55703232-55703251 None:intergenic 40.0%
! CCACTTTGAAAGACAAGTGA+TGG + chr2_4:55703229-55703248 Msa0336320:CDS 40.0%
GGAATTTGAAGGCCAATTGA+AGG + chr2_4:55703271-55703290 Msa0336320:CDS 40.0%
GCGTGTTGAAAACCAAATGA+AGG + chr2_4:55703397-55703416 Msa0336320:CDS 40.0%
TTGACTCAAGCTCCTTCATT+TGG - chr2_4:55703412-55703431 None:intergenic 40.0%
GGACATTAAATCAAAGGAGG+AGG + chr2_4:55703460-55703479 Msa0336320:CDS 40.0%
AGCAGCGATTTAAAAGACGA+TGG + chr2_4:55703540-55703559 Msa0336320:CDS 40.0%
TTTGGTGGGGAAAAAGAATC+CGG + chr2_4:55703716-55703735 Msa0336320:CDS 40.0%
ACTAACACTGTCTCCAGTTA+AGG + chr2_4:55704228-55704247 Msa0336320:intron 40.0%
TCAACCTTCCTCTATACAAC+TGG + chr2_4:55704606-55704625 Msa0336320:intron 40.0%
GATCGATTAAGTCGTACCAT+TGG + chr2_4:55704931-55704950 Msa0336320:CDS 40.0%
TTGGACACAAGTGAGAAAAC+TGG + chr2_4:55704970-55704989 Msa0336320:CDS 40.0%
TTTGACACAGTGGAATAACG+GGG - chr2_4:55705083-55705102 None:intergenic 40.0%
CGTTATTCCACTGTGTCAAA+AGG + chr2_4:55705083-55705102 Msa0336320:CDS 40.0%
GAAGCTAGAGCATGATTTGA+AGG + chr2_4:55705206-55705225 Msa0336320:CDS 40.0%
AAACTCTGTTAGCAAAACCC+AGG - chr2_4:55705389-55705408 None:intergenic 40.0%
! GGGTTTTGCTAACAGAGTTT+CGG + chr2_4:55705389-55705408 Msa0336320:intron 40.0%
! GGTTTTGCTAACAGAGTTTC+GGG + chr2_4:55705390-55705409 Msa0336320:intron 40.0%
GACTGCATATAGGAATGGTA+GGG - chr2_4:55705491-55705510 None:intergenic 40.0%
TGACTGCATATAGGAATGGT+AGG - chr2_4:55705492-55705511 None:intergenic 40.0%
TACCATTCCTATATGCAGTC+AGG + chr2_4:55705491-55705510 Msa0336320:intron 40.0%
ATCCTGACTGCATATAGGAA+TGG - chr2_4:55705496-55705515 None:intergenic 40.0%
!!! TTTGCCCTGTTTTTGTCCTA+CGG + chr2_4:55705708-55705727 Msa0336320:intron 40.0%
AGAACCGTAGGACAAAAACA+GGG - chr2_4:55705715-55705734 None:intergenic 40.0%
TAGAACCGTAGGACAAAAAC+AGG - chr2_4:55705716-55705735 None:intergenic 40.0%
! GTTTTTGTCCTACGGTTCTA+TGG + chr2_4:55705716-55705735 Msa0336320:intron 40.0%
ATTGTGATCCATAGAACCGT+AGG - chr2_4:55705727-55705746 None:intergenic 40.0%
TGTCAACCATATAGGCGATT+TGG - chr2_4:55705784-55705803 None:intergenic 40.0%
AACTGCTCTCACAAATCAGT+CGG - chr2_4:55706023-55706042 None:intergenic 40.0%
GACTGTCCTACAATGCATTT+CGG + chr2_4:55706211-55706230 Msa0336320:CDS 40.0%
CAACCTAATGCAAAGAAACG+GGG + chr2_4:55706331-55706350 Msa0336320:three_prime_UTR 40.0%
TTACCCCGTTTCTTTGCATT+AGG - chr2_4:55706337-55706356 None:intergenic 40.0%
AATGCAAAGAAACGGGGTAA+TGG + chr2_4:55706337-55706356 Msa0336320:three_prime_UTR 40.0%
TTGAGTCAAGCTCCCTCATT+CGG - chr2_4:55702782-55702801 None:intergenic 45.0%
GAGGGGATTTGAATGCCAAA+TGG + chr2_4:55702932-55702951 Msa0336320:CDS 45.0%
GGGATTTGAATGCCAAATGG+AGG + chr2_4:55702935-55702954 Msa0336320:CDS 45.0%
TCAATACCTGCTCCTCCATT+TGG - chr2_4:55702950-55702969 None:intergenic 45.0%
TGGACTCAAGCTCCTTCATT+TGG - chr2_4:55702992-55703011 None:intergenic 45.0%
!! GTCTTCAAGTTGCTTCGCTT+TGG - chr2_4:55703012-55703031 None:intergenic 45.0%
GGAGCATGAATCAAAGGAGA+AGG + chr2_4:55703040-55703059 Msa0336320:CDS 45.0%
! GCATTTCGAAAGCATGATGG+AGG + chr2_4:55703103-55703122 Msa0336320:CDS 45.0%
! GCCATCAAGTTGCTTCTCTT+TGG - chr2_4:55703180-55703199 None:intergenic 45.0%
GAAGGAGCTTGAGTCAAAAG+AGG + chr2_4:55703415-55703434 Msa0336320:CDS 45.0%
AAATAAAGGAGCCCGAGTCA+AGG + chr2_4:55703684-55703703 Msa0336320:CDS 45.0%
CTGTCCAGTTGTATAGAGGA+AGG - chr2_4:55704613-55704632 None:intergenic 45.0%
CTAGGGAAAGTCATGGAACT+TGG - chr2_4:55704661-55704680 None:intergenic 45.0%
CGATTAAGTCGTACCATTGG+TGG + chr2_4:55704934-55704953 Msa0336320:CDS 45.0%
! CTGCAAACTTGTTCCACCAA+TGG - chr2_4:55704950-55704969 None:intergenic 45.0%
TGGTGGAACAAGTTTGCAGT+TGG + chr2_4:55704951-55704970 Msa0336320:CDS 45.0%
GACACAAGTGAGAAAACTGG+CGG + chr2_4:55704973-55704992 Msa0336320:CDS 45.0%
! TTGTCACCCTTTTGACACAG+TGG - chr2_4:55705093-55705112 None:intergenic 45.0%
TGCTATGCACGAAATTTCCG+TGG + chr2_4:55705350-55705369 Msa0336320:CDS 45.0%
GAAATTTCCGTGGAGCTGTT+TGG + chr2_4:55705360-55705379 Msa0336320:CDS 45.0%
TCCTATATGCAGTCAGGATG+AGG + chr2_4:55705497-55705516 Msa0336320:intron 45.0%
ACCTCATCCTGACTGCATAT+AGG - chr2_4:55705501-55705520 None:intergenic 45.0%
TATATGCAGTCAGGATGAGG+TGG + chr2_4:55705500-55705519 Msa0336320:intron 45.0%
TCGGAACCAAATCGCCTATA+TGG + chr2_4:55705775-55705794 Msa0336320:intron 45.0%
ACTGCTCTCACAAATCAGTC+GGG - chr2_4:55706022-55706041 None:intergenic 45.0%
TGAAGGTCAAGTGAAGGAGC+AGG + chr2_4:55702815-55702834 Msa0336320:CDS 50.0%
TGAATGCCAAATGGAGGAGC+AGG + chr2_4:55702941-55702960 Msa0336320:CDS 50.0%
GCAACTTGAAGACCGATTGC+AGG + chr2_4:55703019-55703038 Msa0336320:CDS 50.0%
! GGAATTTGAAGCTCGAGCGA+AGG + chr2_4:55703061-55703080 Msa0336320:CDS 50.0%
! GCAACTTGATGGCCAAGTGA+AGG + chr2_4:55703187-55703206 Msa0336320:CDS 50.0%
TGATGGCCAAGTGAAGGAGT+TGG + chr2_4:55703193-55703212 Msa0336320:CDS 50.0%
GGAGCTTGAGTCAAAAGAGG+AGG + chr2_4:55703418-55703437 Msa0336320:CDS 50.0%
GATCTTGGCGAGGAAAGATG+TGG - chr2_4:55704711-55704730 None:intergenic 50.0%
GAATGAACTGGATCTTGGCG+AGG - chr2_4:55704721-55704740 None:intergenic 50.0%
CACAAATCAGTCGGGCATTC+TGG - chr2_4:55706014-55706033 None:intergenic 50.0%
GCGAGGAAAGATGTGGATGC+TGG - chr2_4:55704704-55704723 None:intergenic 55.0%
CAGGCTTCCAAACAGCTCCA+CGG - chr2_4:55705370-55705389 None:intergenic 55.0%
GTGGAGCTGTTTGGAAGCCT+GGG + chr2_4:55705369-55705388 Msa0336320:CDS 55.0%
TGAAGCTCGAGCGAAGGAGC+TGG + chr2_4:55703067-55703086 Msa0336320:CDS 60.0%
CGTGGAGCTGTTTGGAAGCC+TGG + chr2_4:55705368-55705387 Msa0336320:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55702744 55706514 55702744 ID=Msa0336320;Name=Msa0336320
chr2_4 mRNA 55702744 55706514 55702744 ID=Msa0336320-mRNA-1;Parent=Msa0336320;Name=Msa0336320-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.66|0.25|1|1|1|4|198|595
chr2_4 exon 55702744 55703737 55702744 ID=Msa0336320-mRNA-1:exon:16935;Parent=Msa0336320-mRNA-1
chr2_4 exon 55704914 55705404 55704914 ID=Msa0336320-mRNA-1:exon:16936;Parent=Msa0336320-mRNA-1
chr2_4 exon 55705910 55706071 55705910 ID=Msa0336320-mRNA-1:exon:16937;Parent=Msa0336320-mRNA-1
chr2_4 exon 55706176 55706514 55706176 ID=Msa0336320-mRNA-1:exon:16938;Parent=Msa0336320-mRNA-1
chr2_4 CDS 55702744 55703737 55702744 ID=Msa0336320-mRNA-1:cds;Parent=Msa0336320-mRNA-1
chr2_4 CDS 55704914 55705404 55704914 ID=Msa0336320-mRNA-1:cds;Parent=Msa0336320-mRNA-1
chr2_4 CDS 55705910 55706071 55705910 ID=Msa0336320-mRNA-1:cds;Parent=Msa0336320-mRNA-1
chr2_4 CDS 55706176 55706316 55706176 ID=Msa0336320-mRNA-1:cds;Parent=Msa0336320-mRNA-1
chr2_4 three_prime_UTR 55706317 55706514 55706317 ID=Msa0336320-mRNA-1:three_prime_utr;Parent=Msa0336320-mRNA-1
Gene Sequence

>Msa0336320

ATGGACTTGGTATCAAAACTGAAGGATTTTGAAAACCGAATGAGGGAGCTTGACTCAAAAGAGAGAAAGTTTGAAGGTCAAGTGAAGGAGCAGGAATCTAAAAAGAAGTTGTTTGAAATACAAGTTAAGGAGTTAGAGTCAAAAAATAACCAACTTGTAGGCAAAATGAAGGAGTTTGAATCAAAAGAGAGGGGATTTGAATGCCAAATGGAGGAGCAGGTATTGAAACAGAAGCATTGTGAAAGCCAAATGAAGGAGCTTGAGTCCAAAGCGAAGCAACTTGAAGACCGATTGCAGGAGCATGAATCAAAGGAGAAGGAATTTGAAGCTCGAGCGAAGGAGCTGGAATCTAAAAAGAAGCATTTCGAAAGCATGATGGAGGAGCTCAAATCAAAATTGAGGCTATTGAAAGGACAACTTCAGGAATTTGACTCCAAAGAGAAGCAACTTGATGGCCAAGTGAAGGAGTTGGAATCTAAAAAGAACCACTTTGAAAGACAAGTGATGGAGTTTGAGTCAAAAAAGAAGGAATTTGAAGGCCAATTGAAGGAATTAGAGTCAAAAGATAACAAACTTATAGGCAAAATAAAGAAGTTTGAAACAAAAGAAAAGGAATTTGAATGTCAAATGATGGACTTGCTATCAAATCAGAAGCGTGTTGAAAACCAAATGAAGGAGCTTGAGTCAAAAGAGGAGGAATTTGAAGAACAAGTGAAGGACATTAAATCAAAGGAGGAGGAACTTGAATCAAAAAAGGAGAATTTTAAAAGCCAAGTTGAGGACTTCAAATCAAAAGAGCAGCGATTTAAAAGACGATGGAATGAACTGGAGTTGAAAGAGTATAAGTTCAAAGTAAAGGTGAAGGAGCTCAACTTAAAAGAAAAGCAGTTTGAAGGACAAGTCAACGATCCTGAGTCAATGCTGAAAAAATTTGATGGACAAATAAAGGAGCCCGAGTCAAGGAAAAAATATTTTGGTGGGGAAAAAGAATCCGTTGAATCTTACATGGATGATCGATTAAGTCGTACCATTGGTGGAACAAGTTTGCAGTTGGACACAAGTGAGAAAACTGGCGGAGTTGAATCGCTTTGCAATAGAATTTTAGTTAGTATGCGAGAATCATCAGATCCATCAAAATTTGTTTTGGATATGATATTGAACCCCGTTATTCCACTGTGTCAAAAGGGTGACAATGCTGTGATTATTGCTGATTACCAAATCTATCTGCTACAACAACTGATGAGAACCTCACCAAAAATTGAAATTTGTGTAAAAAAAGAAGCATTGAAGCTAGAGCATGATTTGAAGGCTAACATGAAAGAAAATACTGAAAATTCTTTGGCTGTTCTTGGTTTTCTGCTGCTTTTATCAATTTATGGGTTGCTTGATTATTTTAACGAAGATGAAGTTTTGGAGCTTTTTGCATTTGTTGCTATGCACGAAATTTCCGTGGAGCTGTTTGGAAGCCTGGGTTTTGCTAACAGACATCTTATCAAGAGGAAGCAATTTGTTGAAGCTGTTAGATTCAGTTGTGCATATAACTTGGATGACAAGAATCGATTAGTTGATATGTTGCGAGAACACATCCAGAATGCCCGACTGATTTGTGAGAGCAGTTGCCTGAAAACCAACTCCATTGAAATCAAGGATAAGGCCAGAGATGAAGAAATTGCTAGTCTGAGGACTGTCCTACAATGCATTTCGGATTACAAACTAGAATTTGAGGATCTGCTTCTTAAGGAGATTGAATATCGCATTCTTGAGCTAAAAGCACATAAAGGCAATTAG
Protein sequence

>Msa0336320

MDLVSKLKDFENRMRELDSKERKFEGQVKEQESKKKLFEIQVKELESKNNQLVGKMKEFESKERGFECQMEEQVLKQKHCESQMKELESKAKQLEDRLQEHESKEKEFEARAKELESKKKHFESMMEELKSKLRLLKGQLQEFDSKEKQLDGQVKELESKKNHFERQVMEFESKKKEFEGQLKELESKDNKLIGKIKKFETKEKEFECQMMDLLSNQKRVENQMKELESKEEEFEEQVKDIKSKEEELESKKENFKSQVEDFKSKEQRFKRRWNELELKEYKFKVKVKELNLKEKQFEGQVNDPESMLKKFDGQIKEPESRKKYFGGEKESVESYMDDRLSRTIGGTSLQLDTSEKTGGVESLCNRILVSMRESSDPSKFVLDMILNPVIPLCQKGDNAVIIADYQIYLLQQLMRTSPKIEICVKKEALKLEHDLKANMKENTENSLAVLGFLLLLSIYGLLDYFNEDEVLELFAFVAMHEISVELFGSLGFANRHLIKRKQFVEAVRFSCAYNLDDKNRLVDMLREHIQNARLICESSCLKTNSIEIKDKARDEEIASLRTVLQCISDYKLEFEDLLLKEIEYRILELKAHKGN*