AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0519830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519830 MtrunA17_Chr3g0135161 93.862 668 28 5 1 665 1 658 0.0 1241
Msa0519830 MtrunA17_Chr1g0152161 60.674 712 179 25 1 664 1 659 0.0 731
Msa0519830 MtrunA17_Chr4g0054351 52.023 692 269 19 1 664 1 657 0.0 548
Msa0519830 MtrunA17_Chr8g0343851 47.782 496 188 11 18 502 3 438 4.09e-136 411
Msa0519830 MtrunA17_Chr5g0400871 46.199 513 188 12 1 501 4 440 1.14e-124 380
Msa0519830 MtrunA17_Chr7g0249621 77.358 212 44 2 302 510 248 458 9.54e-111 349
Msa0519830 MtrunA17_Chr4g0032631 66.800 250 61 4 254 499 122 353 2.68e-110 343
Msa0519830 MtrunA17_Chr4g0072291 62.313 268 86 3 239 491 73 340 3.29e-110 342
Msa0519830 MtrunA17_Chr2g0328971 65.182 247 64 2 254 499 129 354 3.64e-109 339
Msa0519830 MtrunA17_Chr5g0412151 76.768 198 42 2 304 498 215 411 1.24e-95 304
Msa0519830 MtrunA17_Chr4g0073521 71.084 166 48 0 312 477 46 211 1.24e-81 262
Msa0519830 MtrunA17_Chr7g0216601 62.234 188 67 2 293 477 46 232 3.23e-75 246
Msa0519830 MtrunA17_Chr8g0355191 59.512 205 76 2 280 477 15 219 7.25e-75 246
Msa0519830 MtrunA17_Chr6g0452911 58.411 214 71 3 274 477 30 235 5.43e-74 243
Msa0519830 MtrunA17_Chr8g0367311 63.842 177 57 2 350 520 22 197 2.43e-71 231
Msa0519830 MtrunA17_Chr4g0002011 68.047 169 51 1 312 477 35 203 2.10e-70 231
Msa0519830 MtrunA17_Chr8g0355181 59.487 195 70 2 312 506 55 240 1.47e-69 231
Msa0519830 MtrunA17_Chr8g0362541 60.104 193 63 1 299 477 55 247 1.33e-68 229
Msa0519830 MtrunA17_Chr2g0305821 65.574 122 40 1 304 423 36 157 3.97e-44 155
Msa0519830 MtrunA17_Chr4g0053181 53.939 165 68 3 316 480 176 332 1.23e-41 159
Msa0519830 MtrunA17_Chr5g0401891 53.939 165 68 3 316 480 152 308 4.14e-41 157
Msa0519830 MtrunA17_Chr7g0257361 57.237 152 54 3 289 437 36 179 1.24e-40 153
Msa0519830 MtrunA17_Chr7g0263581 50.909 165 73 3 316 480 139 295 2.05e-39 151
Msa0519830 MtrunA17_Chr4g0030191 50.909 165 73 3 316 480 131 287 4.06e-39 150
Msa0519830 MtrunA17_Chr2g0325911 41.410 227 94 8 270 480 72 275 4.92e-32 129
Msa0519830 MtrunA17_Chr2g0305831 43.165 139 62 4 419 542 1 137 6.91e-25 103
Msa0519830 MtrunA17_Chr3g0126151 47.368 95 49 1 361 455 47 140 3.16e-22 93.2
Msa0519830 MtrunA17_Chr8g0367321 85.366 41 6 0 311 351 153 193 1.49e-19 87.4
Msa0519830 MtrunA17_Chr1g0170761 40.426 141 76 3 292 432 113 245 4.40e-17 83.6
Msa0519830 MtrunA17_Chr1g0158971 53.030 66 27 2 407 472 109 170 2.17e-11 65.9
Msa0519830 MtrunA17_Chr8g0375031 53.125 64 29 1 416 479 125 187 2.42e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519830 AT4G37750.1 52.256 532 152 15 1 496 1 466 2.31e-156 462
Msa0519830 AT1G72570.1 70.370 243 67 3 257 495 164 405 1.75e-117 357
Msa0519830 AT1G51190.1 67.460 252 73 4 254 499 129 377 4.56e-113 352
Msa0519830 AT3G20840.1 68.000 250 69 5 254 499 126 368 5.63e-111 346
Msa0519830 AT5G57390.2 77.387 199 42 1 296 491 65 263 1.02e-110 341
Msa0519830 AT5G57390.1 77.387 199 42 1 296 491 183 381 9.73e-110 342
Msa0519830 AT5G17430.2 67.755 245 74 2 304 545 136 378 2.61e-107 335
Msa0519830 AT5G17430.1 67.755 245 74 2 304 545 198 440 6.29e-107 336
Msa0519830 AT5G10510.2 75.897 195 46 1 304 498 218 411 1.80e-92 297
Msa0519830 AT5G65510.4 67.907 215 66 1 289 500 146 360 1.06e-90 289
Msa0519830 AT5G65510.2 67.907 215 66 1 289 500 204 418 1.31e-90 291
Msa0519830 AT5G65510.1 67.907 215 66 1 289 500 204 418 1.31e-90 291
Msa0519830 AT5G10510.7 74.747 198 46 2 304 498 218 414 1.85e-90 292
Msa0519830 AT5G10510.5 74.747 198 46 2 304 498 218 414 1.85e-90 292
Msa0519830 AT5G10510.1 74.747 198 46 2 304 498 241 437 2.90e-90 292
Msa0519830 AT5G10510.6 74.747 198 46 2 304 498 256 452 4.10e-90 292
Msa0519830 AT5G10510.4 74.747 198 46 2 304 498 256 452 4.10e-90 292
Msa0519830 AT5G10510.3 67.431 218 47 2 304 498 256 472 6.00e-86 281
Msa0519830 AT5G65510.3 70.807 161 44 1 289 446 146 306 1.28e-77 250
Msa0519830 AT5G65510.3 42.667 75 35 1 414 480 172 246 5.12e-11 64.7
Msa0519830 AT3G54320.3 67.241 174 53 2 312 482 61 233 6.08e-69 231
Msa0519830 AT3G54320.1 67.241 174 53 2 312 482 61 233 7.43e-69 231
Msa0519830 AT1G79700.2 68.047 169 51 1 312 477 48 216 2.53e-63 213
Msa0519830 AT1G16060.1 54.978 231 96 2 272 494 14 244 2.58e-62 211
Msa0519830 AT1G79700.1 63.905 169 48 2 312 477 48 206 1.45e-55 191
Msa0519830 AT3G54320.4 69.173 133 40 1 350 482 36 167 1.11e-51 183
Msa0519830 AT3G54320.5 69.173 133 40 1 350 482 36 167 1.11e-51 183
Msa0519830 AT1G79700.3 67.969 128 41 0 350 477 13 140 8.67e-44 157
Msa0519830 AT1G79700.4 67.969 128 41 0 350 477 7 134 8.94e-44 157
Msa0519830 AT4G36920.1 49.500 200 92 4 281 480 97 287 3.08e-42 159
Msa0519830 AT4G36920.2 49.500 200 92 4 281 480 97 287 3.08e-42 159
Msa0519830 AT1G16060.3 67.969 128 41 0 350 477 25 152 5.16e-42 154
Msa0519830 AT5G67180.2 43.534 232 113 4 260 491 50 263 8.62e-42 154
Msa0519830 AT5G67180.1 43.534 232 113 4 260 491 50 263 4.46e-41 153
Msa0519830 AT5G67180.3 43.043 230 113 4 260 489 50 261 4.97e-41 151
Msa0519830 AT2G41710.1 56.579 152 55 3 289 437 46 189 1.62e-40 154
Msa0519830 AT2G41710.4 56.579 152 55 3 289 437 46 189 3.17e-40 154
Msa0519830 AT2G41710.2 54.777 157 55 4 289 437 46 194 4.01e-38 147
Msa0519830 AT2G28550.3 50.303 165 74 3 316 480 153 309 4.67e-38 147
Msa0519830 AT2G41710.3 45.989 187 55 4 289 437 46 224 5.09e-34 135
Msa0519830 AT3G54320.2 70.968 93 26 1 390 482 1 92 8.17e-33 128
Msa0519830 AT1G16060.2 60.909 110 38 1 390 494 1 110 9.62e-32 123
Msa0519830 AT1G16060.4 60.909 110 38 1 390 494 1 110 9.62e-32 123
Msa0519830 AT1G16060.6 60.909 110 38 1 390 494 1 110 9.62e-32 123
Msa0519830 AT1G16060.5 60.909 110 38 1 390 494 1 110 9.62e-32 123
Msa0519830 AT2G28550.4 49.275 138 62 3 316 453 153 282 1.22e-30 123
Msa0519830 AT5G67180.4 39.013 223 117 5 260 482 50 253 2.26e-30 120
Msa0519830 AT2G28550.1 46.061 165 66 4 316 480 153 294 6.32e-30 124
Msa0519830 AT2G28550.2 49.194 124 55 3 316 439 153 268 3.45e-26 108
Msa0519830 AT2G28550.6 49.194 124 55 3 316 439 153 268 3.45e-26 108
Msa0519830 AT2G39250.2 42.202 109 56 2 317 425 109 210 1.25e-22 97.8
Msa0519830 AT2G39250.1 42.202 109 56 2 317 425 109 210 3.77e-22 98.6
Msa0519830 AT2G39250.1 29.368 269 150 12 395 656 88 323 5.74e-11 64.7
Msa0519830 AT2G28550.5 45.802 131 55 2 350 480 14 128 1.07e-21 96.3
Msa0519830 AT5G60120.6 39.181 171 80 6 300 470 145 291 2.38e-19 92.0
Msa0519830 AT5G60120.1 39.181 171 80 6 300 470 145 291 2.54e-19 92.0
Msa0519830 AT5G60120.4 45.238 126 61 3 313 438 157 274 2.62e-19 91.3
Msa0519830 AT5G60120.3 45.238 126 61 3 313 438 157 274 2.62e-19 91.3
Msa0519830 AT5G60120.5 45.238 126 61 3 313 438 157 274 2.62e-19 91.3
Msa0519830 AT5G60120.2 39.181 171 80 6 300 470 145 291 3.59e-19 91.7
Msa0519830 AT3G54990.2 46.154 104 49 2 316 419 122 218 1.55e-17 83.2
Msa0519830 AT3G54990.1 46.154 104 49 2 316 419 122 218 5.48e-17 83.6
Msa0519830 AT1G16060.7 62.025 79 25 1 421 494 10 88 5.92e-17 80.1

Find 145 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGGTTGGTTGGGAAATT+TGG 0.137392 3_4:+72157727 Msa0519830:three_prime_UTR
TTGGATGATTCTACCAAAAT+AGG 0.146027 3_4:+72157369 Msa0519830:CDS
TGAATGAATGTTAGGACTTT+TGG 0.149737 3_4:+72157758 Msa0519830:three_prime_UTR
GCTAGCAATACTCTTCTTTC+TGG 0.154896 3_4:+72157078 Msa0519830:CDS
TATCTTTCTTTACTTGAAAA+AGG 0.199835 3_4:-72154342 None:intergenic
CTAATGTTGCTGTTAGTTCT+TGG 0.205616 3_4:+72157514 Msa0519830:CDS
AGGAAATCTATTGACACTTT+TGG 0.225909 3_4:+72155475 Msa0519830:CDS
GTAGATATGAAGCACATTTA+TGG 0.228782 3_4:+72155719 Msa0519830:CDS
CCTCTAATGGTGCTTGAAAT+AGG 0.284929 3_4:-72155126 None:intergenic
CTGAAGAAGTTTGAGTTTGT+TGG 0.307916 3_4:-72154496 None:intergenic
AAGCCATTGCCTCACTTTCA+TGG 0.308137 3_4:-72154961 None:intergenic
CTGCAAAACCATCTTCCATT+TGG 0.319566 3_4:-72157232 None:intergenic
TGTTATGGTGTTCCTGAAAA+TGG 0.323560 3_4:+72154581 Msa0519830:CDS
AACTCAAGGTGGTTATGATA+TGG 0.323727 3_4:+72156042 Msa0519830:intron
TCTTTAGATTCTACCTCTAA+TGG 0.324936 3_4:-72155139 None:intergenic
CCAAGAAAATCCTCTAGTTT+AGG 0.328835 3_4:-72154905 None:intergenic
TTTGATTCCATTGAAGGCTT+TGG 0.329887 3_4:-72157483 None:intergenic
TATTCTCCATTAGGCATAGA+TGG 0.336451 3_4:+72155692 Msa0519830:intron
TAACCAAGTGCTGCATAATA+TGG 0.342134 3_4:-72155097 None:intergenic
TCATTTCCTCAAGTTGAGTA+TGG 0.344608 3_4:-72156245 None:intergenic
ATAGGCATAACAGTCAAATT+AGG 0.347664 3_4:-72154620 None:intergenic
TCAAGCAGCTCTTAAGTATT+GGG 0.347974 3_4:+72156090 Msa0519830:CDS
TATATATATGTTTGTTTGGT+TGG 0.349105 3_4:+72154128 Msa0519830:five_prime_UTR
AGGATTAATGAATGAATGTT+AGG 0.358146 3_4:+72157750 Msa0519830:three_prime_UTR
GGTGGTTCTTCTTCTGTTGT+TGG 0.362895 3_4:+72155283 Msa0519830:CDS
CCTATTTCAAGCACCATTAG+AGG 0.368785 3_4:+72155126 Msa0519830:CDS
CCTAGACAGATCTCACCTTC+TGG 0.379310 3_4:+72155382 Msa0519830:CDS
CCTTAACAAACTTAGCCTTT+TGG 0.380384 3_4:+72157822 Msa0519830:three_prime_UTR
CGCTTCAGCAGCTTCTCCAT+TGG 0.384097 3_4:-72157184 None:intergenic
AGAGTTACTACTGTCATTCA+TGG 0.391896 3_4:-72154387 None:intergenic
CAGCAGCTTCTCCATTGGTC+TGG 0.395700 3_4:-72157179 None:intergenic
GGTAACAAGGACCTTTATCT+TGG 0.399524 3_4:+72156589 Msa0519830:CDS
GTTCCCAAATGCCTCAAAAC+TGG 0.400777 3_4:+72155188 Msa0519830:CDS
AATCATAACAACAATTGGTT+AGG 0.403766 3_4:+72154419 Msa0519830:CDS
TAGATATGAAGCACATTTAT+GGG 0.403876 3_4:+72155720 Msa0519830:CDS
TGGTATTAATTCAGTTGGTT+TGG 0.404298 3_4:+72157350 Msa0519830:CDS
GAAGAGAAATAGATTCTGTT+AGG 0.405652 3_4:+72154302 Msa0519830:five_prime_UTR
GCAAGGATTGGAAGAGTTGC+TGG 0.408354 3_4:+72156568 Msa0519830:CDS
ACTCTTTCCAAAGCCTTCAA+TGG 0.408843 3_4:+72157476 Msa0519830:CDS
TGGAACAGAATCAGTGACTA+TGG 0.411439 3_4:+72155402 Msa0519830:CDS
ACAACAATCATAACAACAAT+TGG 0.411645 3_4:+72154414 Msa0519830:CDS
TACTGAATGTTCCAAGATAA+AGG 0.412580 3_4:-72156600 None:intergenic
AGTTTATATATATGTTTGTT+TGG 0.414467 3_4:+72154124 Msa0519830:five_prime_UTR
TCTTCTGTTGTTGGTACTGT+AGG 0.414963 3_4:+72155292 Msa0519830:CDS
TGGATGATTCTACCAAAATA+GGG 0.417120 3_4:+72157370 Msa0519830:CDS
AAGGAAGGACAAACAAGAAA+AGG 0.424488 3_4:+72155757 Msa0519830:CDS
TTCAACACACATAAACTTCC+CGG 0.425153 3_4:+72156117 Msa0519830:CDS
TATGCAGCACTTGGTTATCA+TGG 0.425353 3_4:+72155103 Msa0519830:CDS
CCAAAAGGCTAAGTTTGTTA+AGG 0.429179 3_4:-72157822 None:intergenic
ACTAGCATGGGGAGTCATAA+TGG 0.434049 3_4:+72155250 Msa0519830:CDS
AGGAGAAGAAGTAGAAATGT+GGG 0.436963 3_4:-72154456 None:intergenic
TCAATAGATTTCCTATGAAT+AGG 0.438789 3_4:-72155466 None:intergenic
ACAAACTCAACAATCTGTTA+TGG 0.440794 3_4:+72154566 Msa0519830:CDS
ATGAATGAGAATATGCATAT+TGG 0.443517 3_4:+72157857 Msa0519830:three_prime_UTR
ATCAAGCAGCTCTTAAGTAT+TGG 0.446724 3_4:+72156089 Msa0519830:CDS
TTCTTTCTGGTCAGCATGCA+AGG 0.453728 3_4:+72157091 Msa0519830:CDS
AGTGATCCATCTGACTTGAT+AGG 0.454921 3_4:-72154638 None:intergenic
AAACTTGTCACCAATGATGA+TGG 0.469910 3_4:-72157408 None:intergenic
TAATGATTCCAAATGGAAGA+TGG 0.471281 3_4:+72157224 Msa0519830:CDS
ATGTCTTTACAAGACCTTGT+TGG 0.474882 3_4:+72157330 Msa0519830:CDS
CTTTGTATCATGGAAGCTCT+TGG 0.479184 3_4:+72154659 Msa0519830:CDS
AAAATCATTGTGAATTCTGA+TGG 0.483714 3_4:+72157282 Msa0519830:CDS
GGGAAGTTTATGTGTGTTGA+AGG 0.488674 3_4:-72156115 None:intergenic
CTTGTTGGTATTAATTCAGT+TGG 0.489454 3_4:+72157345 Msa0519830:CDS
AGAACTAACAGCAACATTAG+TGG 0.490687 3_4:-72157511 None:intergenic
ACGAAAATAATGATTCCAAA+TGG 0.491698 3_4:+72157217 Msa0519830:CDS
GTCAAAAGCAGCCTATTCAT+AGG 0.492472 3_4:+72155455 Msa0519830:CDS
GGTAGGTGGCAAGCAAGGAT+TGG 0.507927 3_4:+72156556 Msa0519830:CDS
CATCCATATTATGCAGCACT+TGG 0.508376 3_4:+72155094 Msa0519830:CDS
TTTCTTGGTGGTGCAACAAT+GGG 0.508995 3_4:+72154920 Msa0519830:CDS
GGGTTGGTTGGGAAATTTGG+AGG 0.511636 3_4:+72157730 Msa0519830:three_prime_UTR
AGATGGATCACTTTGTATCA+TGG 0.512780 3_4:+72154649 Msa0519830:CDS
ACACAGCTAGATTGAGAACC+AGG 0.513570 3_4:-72155352 None:intergenic
AGTCATAATGGTGGAGCTGG+TGG 0.513615 3_4:+72155262 Msa0519830:CDS
TCCATTAGGCATAGATGGAC+TGG 0.517509 3_4:+72155697 Msa0519830:intron
ATATGATGTTGAAAGGATCA+TGG 0.520797 3_4:+72157056 Msa0519830:CDS
AATGAGAATATGCATATTGG+AGG 0.520951 3_4:+72157860 Msa0519830:three_prime_UTR
CATAATGGTGGAGCTGGTGG+TGG 0.521042 3_4:+72155265 Msa0519830:CDS
GAGGAGAAGAAGTAGAAATG+TGG 0.523031 3_4:-72154457 None:intergenic
GGGAGTCATAATGGTGGAGC+TGG 0.523283 3_4:+72155259 Msa0519830:CDS
CAAGGAGATATAATCTCTCT+AGG 0.523503 3_4:-72157622 None:intergenic
GTCTGAAAGATTCTGAAAGA+AGG 0.527254 3_4:-72155060 None:intergenic
GGCTTTGGAAAGAGTAGTGA+GGG 0.530598 3_4:-72157468 None:intergenic
AAAAGAGGAGCTGCTAAGCT+TGG 0.531048 3_4:+72155433 Msa0519830:CDS
AAGCTGAAGCAGAAGAATAG+AGG 0.531685 3_4:+72154199 Msa0519830:five_prime_UTR
GAGAACCAGGGCTCATTGAA+AGG 0.533035 3_4:-72155339 None:intergenic
CCAGAAGGTGAGATCTGTCT+AGG 0.534044 3_4:-72155382 None:intergenic
TATCTAAATATGATGTTGAA+AGG 0.534738 3_4:+72157049 Msa0519830:CDS
CATTCCAACATATAGCCAAA+AGG 0.534863 3_4:-72157837 None:intergenic
TATTCATGAACTTCGGTCTG+TGG 0.536183 3_4:-72157132 None:intergenic
GACAAATTGATTGAAGATGC+TGG 0.538955 3_4:-72157567 None:intergenic
TTAAGCCTTTCAATGAGCCC+TGG 0.541546 3_4:+72155334 Msa0519830:CDS
CTGAAAGAAGGTCAAGGGAA+TGG 0.549375 3_4:-72155048 None:intergenic
ATGGGATAACAGTTGCAAGA+AGG 0.549719 3_4:+72155738 Msa0519830:CDS
ACAATGGGTAGTGATGAATA+TGG 0.550458 3_4:+72154935 Msa0519830:CDS
CAGAGAACATCTCAGTATAG+AGG 0.550832 3_4:+72155499 Msa0519830:CDS
TGCAAGGAGAATCAAAGATA+AGG 0.550976 3_4:+72157107 Msa0519830:CDS
ATTTGTGTAGCTACTTGTGA+AGG 0.555126 3_4:-72157540 None:intergenic
TTGCTTGCCACCTACCATGT+TGG 0.556430 3_4:-72156549 None:intergenic
ATGATTATATTCATGAACTT+CGG 0.556488 3_4:-72157139 None:intergenic
AATGAAGAATATGACAAGGC+AGG 0.556697 3_4:+72156263 Msa0519830:CDS
GAAAGAAGCAGGAACAGTGT+TGG 0.556882 3_4:-72154522 None:intergenic
CAGATGAACACTACTAGCAT+GGG 0.557648 3_4:+72155238 Msa0519830:CDS
TGGAAGAGTTGCTGGTAACA+AGG 0.559839 3_4:+72156576 Msa0519830:CDS
GCAGATGAACACTACTAGCA+TGG 0.560674 3_4:+72155237 Msa0519830:CDS
TTGTAACAGCATTTGCTCCA+CGG 0.565794 3_4:-72157017 None:intergenic
AGGCTTTGGAAAGAGTAGTG+AGG 0.568883 3_4:-72157469 None:intergenic
AAGATTCTGAAAGAAGGTCA+AGG 0.578912 3_4:-72155054 None:intergenic
CACAAGTAGCTACACAAATG+AGG 0.580768 3_4:+72157544 Msa0519830:CDS
GTTATGCCTATCAAGTCAGA+TGG 0.582455 3_4:+72154632 Msa0519830:CDS
AATATGTTGCACATTTGAGA+AGG 0.587308 3_4:+72156286 Msa0519830:CDS
TAGCCATGAAAGTGAGGCAA+TGG 0.587506 3_4:+72154958 Msa0519830:CDS
GTTGTTGGTACTGTAGGAAG+TGG 0.597270 3_4:+72155298 Msa0519830:CDS
AAACTACCATACTCAACTTG+AGG 0.599024 3_4:+72156239 Msa0519830:CDS
ATCTTCATCTCCTAAACTAG+AGG 0.599319 3_4:+72154895 Msa0519830:CDS
AACATGGTAGGTGGCAAGCA+AGG 0.600209 3_4:+72156551 Msa0519830:CDS
CAATGTACAGAGGCGTGACA+AGG 0.600518 3_4:+72156433 Msa0519830:CDS
GTCACTGATTCTGTTCCAGA+AGG 0.600695 3_4:-72155397 None:intergenic
GCAGACATCACCAACATGGT+AGG 0.604873 3_4:+72156539 Msa0519830:intron
ATGTAACACAAGGGTAACAT+TGG 0.605982 3_4:+72157799 Msa0519830:three_prime_UTR
AGATTCTGAAAGAAGGTCAA+GGG 0.611616 3_4:-72155053 None:intergenic
CTCAGTATAGAGGTGTCACA+AGG 0.617014 3_4:+72155509 Msa0519830:CDS
CAAGCAGCTCTTAAGTATTG+GGG 0.623947 3_4:+72156091 Msa0519830:CDS
CAAACAAGAAAAGGAAGACA+AGG 0.624646 3_4:+72155766 Msa0519830:CDS
AATGTATCGAGCCAGACCAA+TGG 0.631591 3_4:+72157168 Msa0519830:CDS
TCTAGTTTAGGAGATGAAGA+TGG 0.633764 3_4:-72154893 None:intergenic
GACATCACCAACATGGTAGG+TGG 0.639099 3_4:+72156542 Msa0519830:intron
ATGAGAATATGCATATTGGA+GGG 0.640086 3_4:+72157861 Msa0519830:three_prime_UTR
TGGTCTGTATTAGCTTGATG+AGG 0.640420 3_4:-72155028 None:intergenic
GATAACAGTTGCAAGAAGGA+AGG 0.640507 3_4:+72155742 Msa0519830:CDS
AAAAGCAGTGGATTCTCAAG+GGG 0.641907 3_4:+72156405 Msa0519830:CDS
ATATGGTAGCCATGAAAGTG+AGG 0.643799 3_4:+72154952 Msa0519830:CDS
CTTGGTAGATCACAATCACA+AGG 0.655160 3_4:+72154677 Msa0519830:CDS
TTTGTCATAACATAGTAACA+AGG 0.658655 3_4:-72157640 None:intergenic
GTTACATAAAGAAAACAAAG+TGG 0.660708 3_4:-72157783 None:intergenic
CAACTGAATTAATACCAACA+AGG 0.665562 3_4:-72157344 None:intergenic
GTAGCAGCAATAAAATTCCG+TGG 0.666673 3_4:+72157000 Msa0519830:CDS
GGAGAAGAAGTAGAAATGTG+GGG 0.675273 3_4:-72154455 None:intergenic
AACAGAATCAGTGACTATGG+AGG 0.680741 3_4:+72155405 Msa0519830:CDS
AGCATGGGGAGTCATAATGG+TGG 0.689715 3_4:+72155253 Msa0519830:CDS
AGGAAATGAAGAATATGACA+AGG 0.693051 3_4:+72156259 Msa0519830:CDS
GGGAACTAGAAACATCAACA+TGG 0.697253 3_4:-72155171 None:intergenic
CACAGCTAGATTGAGAACCA+GGG 0.711589 3_4:-72155351 None:intergenic
AGATGAACACTACTAGCATG+GGG 0.712889 3_4:+72155239 Msa0519830:CDS
AGGGGTGCATCAATGTACAG+AGG 0.720794 3_4:+72156423 Msa0519830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATAACAACTTTTTTT+TGG - chr3_4:72154790-72154809 None:intergenic 10.0%
!! AGAAAAAAAAAATTACAAAA+AGG - chr3_4:72156931-72156950 None:intergenic 10.0%
!!! TTTTGTAATTTTTTTTTTCT+TGG + chr3_4:72156931-72156950 Msa0519830:intron 10.0%
!!! GGATATTTATTTTTTAAAAA+GGG + chr3_4:72157710-72157729 Msa0519830:three_prime_UTR 10.0%
!! AGTTTATATATATGTTTGTT+TGG + chr3_4:72154124-72154143 Msa0519830:five_prime_UTR 15.0%
!! TCTTTAATTAATGTTAGATA+TGG + chr3_4:72154812-72154831 Msa0519830:intron 15.0%
!!! TGTTAGTATAAAATTTTAGT+AGG - chr3_4:72155837-72155856 None:intergenic 15.0%
!! ACAAATTCAAATGAAAAAAA+GGG - chr3_4:72156477-72156496 None:intergenic 15.0%
!! TATGTTATGACAAAAAAAAA+GGG + chr3_4:72157649-72157668 Msa0519830:three_prime_UTR 15.0%
!! ATTATGTATTGAAAAACATA+TGG + chr3_4:72157687-72157706 Msa0519830:three_prime_UTR 15.0%
!! TTATGTATTGAAAAACATAT+GGG + chr3_4:72157688-72157707 Msa0519830:three_prime_UTR 15.0%
!!! GGGATATTTATTTTTTAAAA+AGG + chr3_4:72157709-72157728 Msa0519830:three_prime_UTR 15.0%
!!! ATTTATTTTTTAAAAAGGGT+TGG + chr3_4:72157714-72157733 Msa0519830:three_prime_UTR 15.0%
!! TATATATATGTTTGTTTGGT+TGG + chr3_4:72154128-72154147 Msa0519830:five_prime_UTR 20.0%
!! TATCTTTCTTTACTTGAAAA+AGG - chr3_4:72154345-72154364 None:intergenic 20.0%
!!! AAATAACAACTTTTTTTTGG+TGG - chr3_4:72154787-72154806 None:intergenic 20.0%
!! AAAACAACATAATCATTACA+GGG - chr3_4:72154838-72154857 None:intergenic 20.0%
!!! TGTTTGTTTTTTCTTTTACT+TGG - chr3_4:72155954-72155973 None:intergenic 20.0%
!!! GCAATTATTTTGTAGTAAAA+AGG + chr3_4:72156328-72156347 Msa0519830:intron 20.0%
!! TAATTATATGACAATCATGA+TGG + chr3_4:72156357-72156376 Msa0519830:intron 20.0%
!! GACAAATTCAAATGAAAAAA+AGG - chr3_4:72156478-72156497 None:intergenic 20.0%
!!! TTTAAAGTAAAATCCTTCAT+AGG + chr3_4:72156726-72156745 Msa0519830:intron 20.0%
!! AGTAAATTAAATTCCTATGA+AGG - chr3_4:72156742-72156761 None:intergenic 20.0%
!!! TTTCTTGGAAATGAAATTTT+AGG + chr3_4:72156946-72156965 Msa0519830:intron 20.0%
!! TATCTAAATATGATGTTGAA+AGG + chr3_4:72157049-72157068 Msa0519830:CDS 20.0%
!! ATGATTATATTCATGAACTT+CGG - chr3_4:72157142-72157161 None:intergenic 20.0%
!! CTATGTTATGACAAAAAAAA+AGG + chr3_4:72157648-72157667 Msa0519830:three_prime_UTR 20.0%
!! ACAAAAAAAAAGGGTAAAAA+GGG + chr3_4:72157658-72157677 Msa0519830:three_prime_UTR 20.0%
!! TATGTATTGAAAAACATATG+GGG + chr3_4:72157689-72157708 Msa0519830:three_prime_UTR 20.0%
! ACAACAATCATAACAACAAT+TGG + chr3_4:72154414-72154433 Msa0519830:CDS 25.0%
! AATCATAACAACAATTGGTT+AGG + chr3_4:72154419-72154438 Msa0519830:CDS 25.0%
! GAAAACAACATAATCATTAC+AGG - chr3_4:72154839-72154858 None:intergenic 25.0%
! TCAATAGATTTCCTATGAAT+AGG - chr3_4:72155469-72155488 None:intergenic 25.0%
!!! GATTTTGTTTATTCTCCATT+AGG + chr3_4:72155683-72155702 Msa0519830:intron 25.0%
! TAGATATGAAGCACATTTAT+GGG + chr3_4:72155720-72155739 Msa0519830:CDS 25.0%
! ATGCATGTTACAGTATATTT+GGG + chr3_4:72155906-72155925 Msa0519830:intron 25.0%
!!! TTTTTTCTTTTACTTGGTGA+AGG - chr3_4:72155948-72155967 None:intergenic 25.0%
!!! GTTTCTAATTTTGACTTTGT+TGG + chr3_4:72156007-72156026 Msa0519830:intron 25.0%
!!! GGTTTTATTTTTTGAACTCA+AGG + chr3_4:72156028-72156047 Msa0519830:intron 25.0%
!!! TTTATTTTTTGAACTCAAGG+TGG + chr3_4:72156031-72156050 Msa0519830:intron 25.0%
!!! ATTTTTAGTAACAATGTTGG+AGG - chr3_4:72156634-72156653 None:intergenic 25.0%
!!! CACATTTTTAGTAACAATGT+TGG - chr3_4:72156637-72156656 None:intergenic 25.0%
! AAGCATTTGAATTATGAACA+AGG + chr3_4:72156671-72156690 Msa0519830:intron 25.0%
! AGCATTTGAATTATGAACAA+GGG + chr3_4:72156672-72156691 Msa0519830:intron 25.0%
!!! TGATTGGTTATGCTTTTATA+AGG + chr3_4:72156804-72156823 Msa0519830:intron 25.0%
!!! ACAAAATTCCACTTTTTCTA+AGG + chr3_4:72156850-72156869 Msa0519830:intron 25.0%
! ACGAAAATAATGATTCCAAA+TGG + chr3_4:72157217-72157236 Msa0519830:CDS 25.0%
! AAAATCATTGTGAATTCTGA+TGG + chr3_4:72157282-72157301 Msa0519830:CDS 25.0%
!!! TTTTTCAAATCCATCATCAT+TGG + chr3_4:72157398-72157417 Msa0519830:CDS 25.0%
! TTTGTCATAACATAGTAACA+AGG - chr3_4:72157643-72157662 None:intergenic 25.0%
! GACAAAAAAAAAGGGTAAAA+AGG + chr3_4:72157657-72157676 Msa0519830:three_prime_UTR 25.0%
!!! ATTTTTTAAAAAGGGTTGGT+TGG + chr3_4:72157718-72157737 Msa0519830:three_prime_UTR 25.0%
!!! TTTTTTAAAAAGGGTTGGTT+GGG + chr3_4:72157719-72157738 Msa0519830:three_prime_UTR 25.0%
! AGGATTAATGAATGAATGTT+AGG + chr3_4:72157750-72157769 Msa0519830:three_prime_UTR 25.0%
! GTTACATAAAGAAAACAAAG+TGG - chr3_4:72157786-72157805 None:intergenic 25.0%
!! TGTTTTCTTTATGTAACACA+AGG + chr3_4:72157789-72157808 Msa0519830:three_prime_UTR 25.0%
!! GTTTTCTTTATGTAACACAA+GGG + chr3_4:72157790-72157809 Msa0519830:three_prime_UTR 25.0%
! ATGAATGAGAATATGCATAT+TGG + chr3_4:72157857-72157876 Msa0519830:three_prime_UTR 25.0%
GAAGAGAAATAGATTCTGTT+AGG + chr3_4:72154302-72154321 Msa0519830:five_prime_UTR 30.0%
GTTGAAAAATAGAAAGAAGC+AGG - chr3_4:72154536-72154555 None:intergenic 30.0%
ACAAACTCAACAATCTGTTA+TGG + chr3_4:72154566-72154585 Msa0519830:CDS 30.0%
! TGAAAGTTGTTACCATTTTC+AGG - chr3_4:72154596-72154615 None:intergenic 30.0%
ATAGGCATAACAGTCAAATT+AGG - chr3_4:72154623-72154642 None:intergenic 30.0%
TCTTTAGATTCTACCTCTAA+TGG - chr3_4:72155142-72155161 None:intergenic 30.0%
! AGGAAATCTATTGACACTTT+TGG + chr3_4:72155475-72155494 Msa0519830:CDS 30.0%
GCTTTCTTAAGTTATCATGT+TGG + chr3_4:72155648-72155667 Msa0519830:intron 30.0%
!! ATCATGTTGGTGATTATCTT+TGG + chr3_4:72155661-72155680 Msa0519830:intron 30.0%
GTAGATATGAAGCACATTTA+TGG + chr3_4:72155719-72155738 Msa0519830:CDS 30.0%
!!! GTGTTATTTGTTCATGCTTT+TGG + chr3_4:72155860-72155879 Msa0519830:intron 30.0%
CATGCATGTTACAGTATATT+TGG + chr3_4:72155905-72155924 Msa0519830:intron 30.0%
AGAAACAGTAATAGCAATGA+TGG - chr3_4:72155993-72156012 None:intergenic 30.0%
AAGCTAACAAGAAAATGCTA+AGG - chr3_4:72156155-72156174 None:intergenic 30.0%
AGGAAATGAAGAATATGACA+AGG + chr3_4:72156259-72156278 Msa0519830:CDS 30.0%
AATATGTTGCACATTTGAGA+AGG + chr3_4:72156286-72156305 Msa0519830:CDS 30.0%
TATTATTGCAGAAAAAGCAG+TGG + chr3_4:72156393-72156412 Msa0519830:intron 30.0%
ATTTGAATTTGTCACACTGT+TGG + chr3_4:72156485-72156504 Msa0519830:intron 30.0%
TACTGAATGTTCCAAGATAA+AGG - chr3_4:72156603-72156622 None:intergenic 30.0%
ATAACCAATCACTTGTGTTT+GGG - chr3_4:72156795-72156814 None:intergenic 30.0%
!!! ACTTTTTCTAAGGCTGTAAA+GGG + chr3_4:72156860-72156879 Msa0519830:intron 30.0%
AAAGGGAATCTCTAATAGAA+TGG + chr3_4:72156877-72156896 Msa0519830:intron 30.0%
ATCTCTAATAGAATGGTGTA+AGG + chr3_4:72156884-72156903 Msa0519830:intron 30.0%
ATATGATGTTGAAAGGATCA+TGG + chr3_4:72157056-72157075 Msa0519830:CDS 30.0%
TAATGATTCCAAATGGAAGA+TGG + chr3_4:72157224-72157243 Msa0519830:CDS 30.0%
CAACTGAATTAATACCAACA+AGG - chr3_4:72157347-72157366 None:intergenic 30.0%
CTTGTTGGTATTAATTCAGT+TGG + chr3_4:72157345-72157364 Msa0519830:CDS 30.0%
TGGTATTAATTCAGTTGGTT+TGG + chr3_4:72157350-72157369 Msa0519830:CDS 30.0%
TTGGATGATTCTACCAAAAT+AGG + chr3_4:72157369-72157388 Msa0519830:CDS 30.0%
TGGATGATTCTACCAAAATA+GGG + chr3_4:72157370-72157389 Msa0519830:CDS 30.0%
! TGAAAAATGTGTCCCTATTT+TGG - chr3_4:72157385-72157404 None:intergenic 30.0%
!! GCAATTTTTGATTCCATTGA+AGG - chr3_4:72157492-72157511 None:intergenic 30.0%
! TGAATGAATGTTAGGACTTT+TGG + chr3_4:72157758-72157777 Msa0519830:three_prime_UTR 30.0%
! GAATGAATGTTAGGACTTTT+GGG + chr3_4:72157759-72157778 Msa0519830:three_prime_UTR 30.0%
! AATGAATGTTAGGACTTTTG+GGG + chr3_4:72157760-72157779 Msa0519830:three_prime_UTR 30.0%
AGAGTTACTACTGTCATTCA+TGG - chr3_4:72154390-72154409 None:intergenic 35.0%
AGGAGAAGAAGTAGAAATGT+GGG - chr3_4:72154459-72154478 None:intergenic 35.0%
! TGGTAATGATGATGATGATG+AGG - chr3_4:72154479-72154498 None:intergenic 35.0%
! CTGAAGAAGTTTGAGTTTGT+TGG - chr3_4:72154499-72154518 None:intergenic 35.0%
TGTTATGGTGTTCCTGAAAA+TGG + chr3_4:72154581-72154600 Msa0519830:CDS 35.0%
AGATGGATCACTTTGTATCA+TGG + chr3_4:72154649-72154668 Msa0519830:CDS 35.0%
! AGCACACAACACATTTTGAA+GGG - chr3_4:72154741-72154760 None:intergenic 35.0%
! AAGCACACAACACATTTTGA+AGG - chr3_4:72154742-72154761 None:intergenic 35.0%
! TCTAGTTTAGGAGATGAAGA+TGG - chr3_4:72154896-72154915 None:intergenic 35.0%
ATCTTCATCTCCTAAACTAG+AGG + chr3_4:72154895-72154914 Msa0519830:CDS 35.0%
! CCAAGAAAATCCTCTAGTTT+AGG - chr3_4:72154908-72154927 None:intergenic 35.0%
! CCTAAACTAGAGGATTTTCT+TGG + chr3_4:72154905-72154924 Msa0519830:CDS 35.0%
! AAACTAGAGGATTTTCTTGG+TGG + chr3_4:72154908-72154927 Msa0519830:CDS 35.0%
ACAATGGGTAGTGATGAATA+TGG + chr3_4:72154935-72154954 Msa0519830:CDS 35.0%
! AGATTCTGAAAGAAGGTCAA+GGG - chr3_4:72155056-72155075 None:intergenic 35.0%
! AAGATTCTGAAAGAAGGTCA+AGG - chr3_4:72155057-72155076 None:intergenic 35.0%
! GTCTGAAAGATTCTGAAAGA+AGG - chr3_4:72155063-72155082 None:intergenic 35.0%
! TAACCAAGTGCTGCATAATA+TGG - chr3_4:72155100-72155119 None:intergenic 35.0%
!!! ATACCAGTTTTGAGGCATTT+GGG - chr3_4:72155194-72155213 None:intergenic 35.0%
!!! AATACCAGTTTTGAGGCATT+TGG - chr3_4:72155195-72155214 None:intergenic 35.0%
ACTATGGAGGCTAAAAAAAG+AGG + chr3_4:72155418-72155437 Msa0519830:CDS 35.0%
TATTCTCCATTAGGCATAGA+TGG + chr3_4:72155692-72155711 Msa0519830:intron 35.0%
AAGGAAGGACAAACAAGAAA+AGG + chr3_4:72155757-72155776 Msa0519830:CDS 35.0%
CAAACAAGAAAAGGAAGACA+AGG + chr3_4:72155766-72155785 Msa0519830:CDS 35.0%
AACTCAAGGTGGTTATGATA+TGG + chr3_4:72156042-72156061 Msa0519830:intron 35.0%
ATCAAGCAGCTCTTAAGTAT+TGG + chr3_4:72156089-72156108 Msa0519830:CDS 35.0%
TCAAGCAGCTCTTAAGTATT+GGG + chr3_4:72156090-72156109 Msa0519830:CDS 35.0%
TTCAACACACATAAACTTCC+CGG + chr3_4:72156117-72156136 Msa0519830:CDS 35.0%
AAACTACCATACTCAACTTG+AGG + chr3_4:72156239-72156258 Msa0519830:CDS 35.0%
!! TCATTTCCTCAAGTTGAGTA+TGG - chr3_4:72156248-72156267 None:intergenic 35.0%
AATGAAGAATATGACAAGGC+AGG + chr3_4:72156263-72156282 Msa0519830:CDS 35.0%
! AAAAAGCAGTGGATTCTCAA+GGG + chr3_4:72156404-72156423 Msa0519830:CDS 35.0%
! TTTTCCCAAACACAAGTGAT+TGG + chr3_4:72156788-72156807 Msa0519830:intron 35.0%
CATAACCAATCACTTGTGTT+TGG - chr3_4:72156796-72156815 None:intergenic 35.0%
CTTTACAGCCTTAGAAAAAG+TGG - chr3_4:72156861-72156880 None:intergenic 35.0%
!!! CACTTTTTCTAAGGCTGTAA+AGG + chr3_4:72156859-72156878 Msa0519830:intron 35.0%
! TGAAATTTTAGGCACTCAAG+AGG + chr3_4:72156957-72156976 Msa0519830:intron 35.0%
TGCAAGGAGAATCAAAGATA+AGG + chr3_4:72157107-72157126 Msa0519830:CDS 35.0%
ATGTCTTTACAAGACCTTGT+TGG + chr3_4:72157330-72157349 Msa0519830:CDS 35.0%
AAACTTGTCACCAATGATGA+TGG - chr3_4:72157411-72157430 None:intergenic 35.0%
TTTGATTCCATTGAAGGCTT+TGG - chr3_4:72157486-72157505 None:intergenic 35.0%
AGAACTAACAGCAACATTAG+TGG - chr3_4:72157514-72157533 None:intergenic 35.0%
! CTAATGTTGCTGTTAGTTCT+TGG + chr3_4:72157514-72157533 Msa0519830:CDS 35.0%
ATTTGTGTAGCTACTTGTGA+AGG - chr3_4:72157543-72157562 None:intergenic 35.0%
GACAAATTGATTGAAGATGC+TGG - chr3_4:72157570-72157589 None:intergenic 35.0%
CAAGGAGATATAATCTCTCT+AGG - chr3_4:72157625-72157644 None:intergenic 35.0%
ATGTAACACAAGGGTAACAT+TGG + chr3_4:72157799-72157818 Msa0519830:three_prime_UTR 35.0%
!! CCAAAAGGCTAAGTTTGTTA+AGG - chr3_4:72157825-72157844 None:intergenic 35.0%
!! CCTTAACAAACTTAGCCTTT+TGG + chr3_4:72157822-72157841 Msa0519830:three_prime_UTR 35.0%
!! TTAGCCTTTTGGCTATATGT+TGG + chr3_4:72157833-72157852 Msa0519830:three_prime_UTR 35.0%
CATTCCAACATATAGCCAAA+AGG - chr3_4:72157840-72157859 None:intergenic 35.0%
AAGCTGAAGCAGAAGAATAG+AGG + chr3_4:72154199-72154218 Msa0519830:five_prime_UTR 40.0%
GGAGAAGAAGTAGAAATGTG+GGG - chr3_4:72154458-72154477 None:intergenic 40.0%
GAGGAGAAGAAGTAGAAATG+TGG - chr3_4:72154460-72154479 None:intergenic 40.0%
GTTATGCCTATCAAGTCAGA+TGG + chr3_4:72154632-72154651 Msa0519830:CDS 40.0%
! AGTGATCCATCTGACTTGAT+AGG - chr3_4:72154641-72154660 None:intergenic 40.0%
CTTTGTATCATGGAAGCTCT+TGG + chr3_4:72154659-72154678 Msa0519830:CDS 40.0%
CTTGGTAGATCACAATCACA+AGG + chr3_4:72154677-72154696 Msa0519830:CDS 40.0%
GTAGATCACAATCACAAGGT+TGG + chr3_4:72154681-72154700 Msa0519830:intron 40.0%
!!! TTTTCTTGGTGGTGCAACAA+TGG + chr3_4:72154919-72154938 Msa0519830:CDS 40.0%
!! TTTCTTGGTGGTGCAACAAT+GGG + chr3_4:72154920-72154939 Msa0519830:CDS 40.0%
ATATGGTAGCCATGAAAGTG+AGG + chr3_4:72154952-72154971 Msa0519830:CDS 40.0%
! GATGAGGATCTGCATTTTGT+TGG - chr3_4:72155015-72155034 None:intergenic 40.0%
! TGGTCTGTATTAGCTTGATG+AGG - chr3_4:72155031-72155050 None:intergenic 40.0%
CATCCATATTATGCAGCACT+TGG + chr3_4:72155094-72155113 Msa0519830:CDS 40.0%
TATGCAGCACTTGGTTATCA+TGG + chr3_4:72155103-72155122 Msa0519830:CDS 40.0%
CCTCTAATGGTGCTTGAAAT+AGG - chr3_4:72155129-72155148 None:intergenic 40.0%
CCTATTTCAAGCACCATTAG+AGG + chr3_4:72155126-72155145 Msa0519830:CDS 40.0%
GGGAACTAGAAACATCAACA+TGG - chr3_4:72155174-72155193 None:intergenic 40.0%
! GAAGCAGAATACCAGTTTTG+AGG - chr3_4:72155202-72155221 None:intergenic 40.0%
CAGATGAACACTACTAGCAT+GGG + chr3_4:72155238-72155257 Msa0519830:CDS 40.0%
AGATGAACACTACTAGCATG+GGG + chr3_4:72155239-72155258 Msa0519830:CDS 40.0%
TCTTCTGTTGTTGGTACTGT+AGG + chr3_4:72155292-72155311 Msa0519830:CDS 40.0%
TGGAACAGAATCAGTGACTA+TGG + chr3_4:72155402-72155421 Msa0519830:CDS 40.0%
AACAGAATCAGTGACTATGG+AGG + chr3_4:72155405-72155424 Msa0519830:CDS 40.0%
GTCAAAAGCAGCCTATTCAT+AGG + chr3_4:72155455-72155474 Msa0519830:CDS 40.0%
CAGAGAACATCTCAGTATAG+AGG + chr3_4:72155499-72155518 Msa0519830:CDS 40.0%
ATGGGATAACAGTTGCAAGA+AGG + chr3_4:72155738-72155757 Msa0519830:CDS 40.0%
GATAACAGTTGCAAGAAGGA+AGG + chr3_4:72155742-72155761 Msa0519830:CDS 40.0%
! CAAGCAGCTCTTAAGTATTG+GGG + chr3_4:72156091-72156110 Msa0519830:CDS 40.0%
GGGAAGTTTATGTGTGTTGA+AGG - chr3_4:72156118-72156137 None:intergenic 40.0%
CTAAGGAGATCAAATGTACC+GGG - chr3_4:72156138-72156157 None:intergenic 40.0%
GCTAAGGAGATCAAATGTAC+CGG - chr3_4:72156139-72156158 None:intergenic 40.0%
! GAAAAAGCAGTGGATTCTCA+AGG + chr3_4:72156403-72156422 Msa0519830:intron 40.0%
! AAAAGCAGTGGATTCTCAAG+GGG + chr3_4:72156405-72156424 Msa0519830:CDS 40.0%
! TTTTGCAGACATCACCAACA+TGG + chr3_4:72156535-72156554 Msa0519830:intron 40.0%
GGTAACAAGGACCTTTATCT+TGG + chr3_4:72156589-72156608 Msa0519830:CDS 40.0%
GTAGCAGCAATAAAATTCCG+TGG + chr3_4:72157000-72157019 Msa0519830:CDS 40.0%
TTGTAACAGCATTTGCTCCA+CGG - chr3_4:72157020-72157039 None:intergenic 40.0%
GCTAGCAATACTCTTCTTTC+TGG + chr3_4:72157078-72157097 Msa0519830:CDS 40.0%
TATTCATGAACTTCGGTCTG+TGG - chr3_4:72157135-72157154 None:intergenic 40.0%
CTGCAAAACCATCTTCCATT+TGG - chr3_4:72157235-72157254 None:intergenic 40.0%
ACTCTTTCCAAAGCCTTCAA+TGG + chr3_4:72157476-72157495 Msa0519830:CDS 40.0%
CACAAGTAGCTACACAAATG+AGG + chr3_4:72157544-72157563 Msa0519830:CDS 40.0%
CATTCCATGCAGCAAAAACT+GGG - chr3_4:72157599-72157618 None:intergenic 40.0%
TCATTCCATGCAGCAAAAAC+TGG - chr3_4:72157600-72157619 None:intergenic 40.0%
!! AAAGGGTTGGTTGGGAAATT+TGG + chr3_4:72157727-72157746 Msa0519830:three_prime_UTR 40.0%
GAAAGAAGCAGGAACAGTGT+TGG - chr3_4:72154525-72154544 None:intergenic 45.0%
TAGCCATGAAAGTGAGGCAA+TGG + chr3_4:72154958-72154977 Msa0519830:CDS 45.0%
AAGCCATTGCCTCACTTTCA+TGG - chr3_4:72154964-72154983 None:intergenic 45.0%
CTGAAAGAAGGTCAAGGGAA+TGG - chr3_4:72155051-72155070 None:intergenic 45.0%
GTTCCCAAATGCCTCAAAAC+TGG + chr3_4:72155188-72155207 Msa0519830:CDS 45.0%
GCAGATGAACACTACTAGCA+TGG + chr3_4:72155237-72155256 Msa0519830:CDS 45.0%
ACTAGCATGGGGAGTCATAA+TGG + chr3_4:72155250-72155269 Msa0519830:CDS 45.0%
GGTGGTTCTTCTTCTGTTGT+TGG + chr3_4:72155283-72155302 Msa0519830:CDS 45.0%
GTTGTTGGTACTGTAGGAAG+TGG + chr3_4:72155298-72155317 Msa0519830:CDS 45.0%
TTAAGCCTTTCAATGAGCCC+TGG + chr3_4:72155334-72155353 Msa0519830:CDS 45.0%
CACAGCTAGATTGAGAACCA+GGG - chr3_4:72155354-72155373 None:intergenic 45.0%
ACACAGCTAGATTGAGAACC+AGG - chr3_4:72155355-72155374 None:intergenic 45.0%
!! GTCACTGATTCTGTTCCAGA+AGG - chr3_4:72155400-72155419 None:intergenic 45.0%
AAAAGAGGAGCTGCTAAGCT+TGG + chr3_4:72155433-72155452 Msa0519830:CDS 45.0%
!! CTCAGTATAGAGGTGTCACA+AGG + chr3_4:72155509-72155528 Msa0519830:CDS 45.0%
TCCATTAGGCATAGATGGAC+TGG + chr3_4:72155697-72155716 Msa0519830:intron 45.0%
ACCAGTCCATCTATGCCTAA+TGG - chr3_4:72155701-72155720 None:intergenic 45.0%
TGGAAGAGTTGCTGGTAACA+AGG + chr3_4:72156576-72156595 Msa0519830:CDS 45.0%
! TTCTTTCTGGTCAGCATGCA+AGG + chr3_4:72157091-72157110 Msa0519830:CDS 45.0%
AATGTATCGAGCCAGACCAA+TGG + chr3_4:72157168-72157187 Msa0519830:CDS 45.0%
!! AGTGAGGGAGCAGTTTTATC+AGG - chr3_4:72157456-72157475 None:intergenic 45.0%
!! GGCTTTGGAAAGAGTAGTGA+GGG - chr3_4:72157471-72157490 None:intergenic 45.0%
!! AGGCTTTGGAAAGAGTAGTG+AGG - chr3_4:72157472-72157491 None:intergenic 45.0%
! ACTTCCCAGTTTTTGCTGCA+TGG + chr3_4:72157592-72157611 Msa0519830:CDS 45.0%
AGCATGGGGAGTCATAATGG+TGG + chr3_4:72155253-72155272 Msa0519830:CDS 50.0%
! AGTCATAATGGTGGAGCTGG+TGG + chr3_4:72155262-72155281 Msa0519830:CDS 50.0%
GAGAACCAGGGCTCATTGAA+AGG - chr3_4:72155342-72155361 None:intergenic 50.0%
CCAGAAGGTGAGATCTGTCT+AGG - chr3_4:72155385-72155404 None:intergenic 50.0%
CCTAGACAGATCTCACCTTC+TGG + chr3_4:72155382-72155401 Msa0519830:CDS 50.0%
! AGGGGTGCATCAATGTACAG+AGG + chr3_4:72156423-72156442 Msa0519830:CDS 50.0%
! CAATGTACAGAGGCGTGACA+AGG + chr3_4:72156433-72156452 Msa0519830:CDS 50.0%
GCAGACATCACCAACATGGT+AGG + chr3_4:72156539-72156558 Msa0519830:intron 50.0%
GACATCACCAACATGGTAGG+TGG + chr3_4:72156542-72156561 Msa0519830:intron 50.0%
TTGCTTGCCACCTACCATGT+TGG - chr3_4:72156552-72156571 None:intergenic 50.0%
AACATGGTAGGTGGCAAGCA+AGG + chr3_4:72156551-72156570 Msa0519830:CDS 50.0%
GCAAGGATTGGAAGAGTTGC+TGG + chr3_4:72156568-72156587 Msa0519830:CDS 50.0%
!! GGGTTGGTTGGGAAATTTGG+AGG + chr3_4:72157730-72157749 Msa0519830:three_prime_UTR 50.0%
! GGGAGTCATAATGGTGGAGC+TGG + chr3_4:72155259-72155278 Msa0519830:CDS 55.0%
! CATAATGGTGGAGCTGGTGG+TGG + chr3_4:72155265-72155284 Msa0519830:CDS 55.0%
GGTAGGTGGCAAGCAAGGAT+TGG + chr3_4:72156556-72156575 Msa0519830:CDS 55.0%
CAGCAGCTTCTCCATTGGTC+TGG - chr3_4:72157182-72157201 None:intergenic 55.0%
CGCTTCAGCAGCTTCTCCAT+TGG - chr3_4:72157187-72157206 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 72154079 72157881 72154079 ID=Msa0519830;Name=Msa0519830
chr3_4 mRNA 72154079 72157881 72154079 ID=Msa0519830-mRNA-1;Parent=Msa0519830;Name=Msa0519830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=301|0.85|0.75|1|1|1|8|255|665
chr3_4 exon 72154079 72154698 72154079 ID=Msa0519830-mRNA-1:exon:19833;Parent=Msa0519830-mRNA-1
chr3_4 exon 72154885 72155530 72154885 ID=Msa0519830-mRNA-1:exon:19834;Parent=Msa0519830-mRNA-1
chr3_4 exon 72155705 72155787 72155705 ID=Msa0519830-mRNA-1:exon:19835;Parent=Msa0519830-mRNA-1
chr3_4 exon 72156050 72156138 72156050 ID=Msa0519830-mRNA-1:exon:19836;Parent=Msa0519830-mRNA-1
chr3_4 exon 72156234 72156307 72156234 ID=Msa0519830-mRNA-1:exon:19837;Parent=Msa0519830-mRNA-1
chr3_4 exon 72156404 72156454 72156404 ID=Msa0519830-mRNA-1:exon:19838;Parent=Msa0519830-mRNA-1
chr3_4 exon 72156543 72156619 72156543 ID=Msa0519830-mRNA-1:exon:19839;Parent=Msa0519830-mRNA-1
chr3_4 exon 72156968 72157881 72156968 ID=Msa0519830-mRNA-1:exon:19840;Parent=Msa0519830-mRNA-1
chr3_4 five_prime_UTR 72154079 72154379 72154079 ID=Msa0519830-mRNA-1:five_prime_utr;Parent=Msa0519830-mRNA-1
chr3_4 CDS 72154380 72154698 72154380 ID=Msa0519830-mRNA-1:cds;Parent=Msa0519830-mRNA-1
chr3_4 CDS 72154885 72155530 72154885 ID=Msa0519830-mRNA-1:cds;Parent=Msa0519830-mRNA-1
chr3_4 CDS 72155705 72155787 72155705 ID=Msa0519830-mRNA-1:cds;Parent=Msa0519830-mRNA-1
chr3_4 CDS 72156050 72156138 72156050 ID=Msa0519830-mRNA-1:cds;Parent=Msa0519830-mRNA-1
chr3_4 CDS 72156234 72156307 72156234 ID=Msa0519830-mRNA-1:cds;Parent=Msa0519830-mRNA-1
chr3_4 CDS 72156404 72156454 72156404 ID=Msa0519830-mRNA-1:cds;Parent=Msa0519830-mRNA-1
chr3_4 CDS 72156543 72156619 72156543 ID=Msa0519830-mRNA-1:cds;Parent=Msa0519830-mRNA-1
chr3_4 CDS 72156968 72157626 72156968 ID=Msa0519830-mRNA-1:cds;Parent=Msa0519830-mRNA-1
chr3_4 three_prime_UTR 72157627 72157881 72157627 ID=Msa0519830-mRNA-1:three_prime_utr;Parent=Msa0519830-mRNA-1
Gene Sequence

>Msa0519830

ATGAAGTCCATGAATGACAGTAGTAACTCTGATGACAACAATCATAACAACAATTGGTTAGGTTTCTCTCTCTCACCCCACATTTCTACTTCTTCTCCTCATCATCATCATCATTACCAACAAACTCAAACTTCTTCAGTTTCCAACACTGTTCCTGCTTCTTTCTATTTTTCAACTTCTCACTTCACAAACTCAACAATCTGTTATGGTGTTCCTGAAAATGGTAACAACTTTCATTCACCTAATTTGACTGTTATGCCTATCAAGTCAGATGGATCACTTTGTATCATGGAAGCTCTTGGTAGATCACAATCACAAGTGATGATGCCATCTTCATCTCCTAAACTAGAGGATTTTCTTGGTGGTGCAACAATGGGTAGTGATGAATATGGTAGCCATGAAAGTGAGGCAATGGCTTTAAGCTTAGACAGCATCTACTATAATAACCAACAAAATGCAGATCCTCATCAAGCTAATACAGACCATTCCCTTGACCTTCTTTCAGAATCTTTCAGACAACAAACATCACATCCATATTATGCAGCACTTGGTTATCATGGCCTATTTCAAGCACCATTAGAGGTAGAATCTAAAGAAAACATAAACCATGTTGATGTTTCTAGTTCCCAAATGCCTCAAAACTGGTATTCTGCTTCTCAAGCTTTAGAGCAGCAGATGAACACTACTAGCATGGGGAGTCATAATGGTGGAGCTGGTGGTGGTTCTTCTTCTGTTGTTGGTACTGTAGGAAGTGGCGAGTTACAATCTTTAAGCCTTTCAATGAGCCCTGGTTCTCAATCTAGCTGTGTTACTGTTCCTAGACAGATCTCACCTTCTGGAACAGAATCAGTGACTATGGAGGCTAAAAAAAGAGGAGCTGCTAAGCTTGGTCAAAAGCAGCCTATTCATAGGAAATCTATTGACACTTTTGGACAGAGAACATCTCAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAGGAAGGACAAACAAGAAAAGGAAGACAAGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCAAGCAGCTCTTAAGTATTGGGGACCTTCAACACACATAAACTTCCCGCTAGAAAACTACCATACTCAACTTGAGGAAATGAAGAATATGACAAGGCAGGAATATGTTGCACATTTGAGAAGAAAAAGCAGTGGATTCTCAAGGGGTGCATCAATGTACAGAGGCGTGACAAGACATCACCAACATGGTAGGTGGCAAGCAAGGATTGGAAGAGTTGCTGGTAACAAGGACCTTTATCTTGGAACATTCAGCACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCAGCAATAAAATTCCGTGGAGCAAATGCTGTTACAAATTTTGACATATCTAAATATGATGTTGAAAGGATCATGGCTAGCAATACTCTTCTTTCTGGTCAGCATGCAAGGAGAATCAAAGATAAGGATCCACAGACCGAAGTTCATGAATATAATCATAGTACTAATGTATCGAGCCAGACCAATGGAGAAGCTGCTGAAGCGCAAAACGTTAACGAAAATAATGATTCCAAATGGAAGATGGTTTTGCAGCAACAGCAATCAAATAGTTGTGATAAAAAAATCATTGTGAATTCTGATGGAAGTTACAAGAATTCTGATTTCTCTATGTCTTTACAAGACCTTGTTGGTATTAATTCAGTTGGTTTGGATGATTCTACCAAAATAGGGACACATTTTTCAAATCCATCATCATTGGTGACAAGTTTAAGCAGTTCAAGAGAAGCTAGTCCTGATAAAACTGCTCCCTCACTACTCTTTCCAAAGCCTTCAATGGAATCAAAAATTGCCACTAATGTTGCTGTTAGTTCTTGGTTTCCTTCACAAGTAGCTACACAAATGAGGCCAGCATCTTCAATCAATTTGTCTCACTTCCCAGTTTTTGCTGCATGGAATGAGACCTAG
Protein sequence

>Msa0519830

MKSMNDSSNSDDNNHNNNWLGFSLSPHISTSSPHHHHHYQQTQTSSVSNTVPASFYFSTSHFTNSTICYGVPENGNNFHSPNLTVMPIKSDGSLCIMEALGRSQSQVMMPSSSPKLEDFLGGATMGSDEYGSHESEAMALSLDSIYYNNQQNADPHQANTDHSLDLLSESFRQQTSHPYYAALGYHGLFQAPLEVESKENINHVDVSSSQMPQNWYSASQALEQQMNTTSMGSHNGGAGGGSSSVVGTVGSGELQSLSLSMSPGSQSSCVTVPRQISPSGTESVTMEAKKRGAAKLGQKQPIHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYHTQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISKYDVERIMASNTLLSGQHARRIKDKDPQTEVHEYNHSTNVSSQTNGEAAEAQNVNENNDSKWKMVLQQQQSNSCDKKIIVNSDGSYKNSDFSMSLQDLVGINSVGLDDSTKIGTHFSNPSSLVTSLSSSREASPDKTAPSLLFPKPSMESKIATNVAVSSWFPSQVATQMRPASSINLSHFPVFAAWNET*