Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605750 | XP_003606943.1 | 94.886 | 528 | 16 | 1 | 1 | 517 | 1 | 528 | 0.0 | 1030 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605750 | sp|Q00081|GLGL1_SOLTU | 77.399 | 469 | 95 | 1 | 60 | 517 | 2 | 470 | 0.0 | 772 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605750 | G7JHD0 | 94.886 | 528 | 16 | 1 | 1 | 517 | 1 | 528 | 0.0 | 1030 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0605750 | Msa0646780 | 0.888985 | 3.630226e-73 | -8.615850e-47 |
| Msa0605750 | Msa0686360 | 0.980876 | 3.055174e-151 | -8.615850e-47 |
| Msa0140760 | Msa0605750 | 0.829726 | 4.381010e-55 | -8.615850e-47 |
| Msa0385920 | Msa0605750 | 0.831717 | 1.424731e-55 | -8.615850e-47 |
| Msa0479740 | Msa0605750 | 0.855044 | 8.214111e-62 | -8.615850e-47 |
| Msa0316280 | Msa0605750 | 0.816046 | 6.768228e-52 | -8.615850e-47 |
| Msa0523360 | Msa0605750 | 0.850733 | 1.403089e-60 | -8.615850e-47 |
| Msa0550330 | Msa0605750 | 0.889152 | 3.128685e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605750 | MtrunA17_Chr4g0035171 | 94.886 | 528 | 16 | 1 | 1 | 517 | 1 | 528 | 0.0 | 1030 |
| Msa0605750 | MtrunA17_Chr3g0141761 | 73.731 | 453 | 117 | 2 | 67 | 517 | 78 | 530 | 0.0 | 699 |
| Msa0605750 | MtrunA17_Chr4g0074531 | 67.045 | 440 | 144 | 1 | 79 | 517 | 82 | 521 | 0.0 | 655 |
| Msa0605750 | MtrunA17_Chr7g0271011 | 66.083 | 457 | 146 | 2 | 70 | 517 | 80 | 536 | 0.0 | 637 |
| Msa0605750 | MtrunA17_Chr3g0144741 | 73.913 | 345 | 75 | 2 | 1 | 337 | 1 | 338 | 1.23e-177 | 503 |
| Msa0605750 | MtrunA17_Chr5g0447341 | 52.830 | 424 | 192 | 5 | 97 | 517 | 97 | 515 | 5.51e-163 | 472 |
| Msa0605750 | MtrunA17_Chr3g0120471 | 53.302 | 424 | 187 | 6 | 97 | 517 | 96 | 511 | 5.75e-162 | 469 |
| Msa0605750 | MtrunA17_Chr0c30g0494071 | 49.049 | 473 | 129 | 8 | 79 | 517 | 21 | 415 | 1.85e-148 | 431 |
| Msa0605750 | MtrunA17_Chr3g0144731 | 87.261 | 157 | 20 | 0 | 361 | 517 | 5 | 161 | 1.58e-97 | 291 |
| Msa0605750 | MtrunA17_Chr4g0077071 | 41.250 | 80 | 46 | 1 | 350 | 428 | 2 | 81 | 2.22e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605750 | AT4G39210.2 | 70.076 | 528 | 139 | 4 | 2 | 517 | 1 | 521 | 0.0 | 767 |
| Msa0605750 | AT4G39210.1 | 70.076 | 528 | 139 | 4 | 2 | 517 | 1 | 521 | 0.0 | 767 |
| Msa0605750 | AT2G21590.2 | 71.825 | 504 | 125 | 3 | 26 | 517 | 25 | 523 | 0.0 | 731 |
| Msa0605750 | AT2G21590.3 | 71.825 | 504 | 125 | 3 | 26 | 517 | 25 | 523 | 0.0 | 731 |
| Msa0605750 | AT2G21590.5 | 71.825 | 504 | 125 | 3 | 26 | 517 | 25 | 523 | 0.0 | 731 |
| Msa0605750 | AT2G21590.4 | 71.825 | 504 | 125 | 3 | 26 | 517 | 25 | 523 | 0.0 | 731 |
| Msa0605750 | AT2G21590.7 | 71.825 | 504 | 125 | 3 | 26 | 517 | 25 | 523 | 0.0 | 731 |
| Msa0605750 | AT2G21590.1 | 71.825 | 504 | 125 | 3 | 26 | 517 | 25 | 523 | 0.0 | 731 |
| Msa0605750 | AT2G21590.6 | 71.825 | 504 | 125 | 3 | 26 | 517 | 25 | 523 | 0.0 | 731 |
| Msa0605750 | AT1G27680.1 | 75.171 | 439 | 108 | 1 | 80 | 517 | 80 | 518 | 0.0 | 715 |
| Msa0605750 | AT5G19220.1 | 66.743 | 439 | 146 | 0 | 79 | 517 | 84 | 522 | 0.0 | 654 |
| Msa0605750 | AT5G48300.1 | 53.774 | 424 | 188 | 5 | 97 | 517 | 102 | 520 | 2.05e-165 | 479 |
| Msa0605750 | AT1G05610.1 | 40.950 | 442 | 236 | 10 | 83 | 517 | 53 | 476 | 2.50e-109 | 334 |
| Msa0605750 | AT1G05610.2 | 40.449 | 445 | 240 | 10 | 83 | 517 | 53 | 482 | 8.24e-109 | 333 |
Find 123 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTGCTCGCACCTATTT+TGG | 0.081433 | 4_2:-51806549 | Msa0605750:CDS |
| CAAATTTGCTATATGGTTAT+TGG | 0.138588 | 4_2:+51807506 | None:intergenic |
| ATTCTCAATGTTAGTGTTCT+TGG | 0.168119 | 4_2:+51806083 | None:intergenic |
| GTGTCAACTTCAGACCTTTC+AGG | 0.205906 | 4_2:-51806885 | Msa0605750:intron |
| GTTGATGCCATTTCCAAAAT+AGG | 0.213388 | 4_2:+51806536 | None:intergenic |
| ACACATATATATAAACAAAA+AGG | 0.218743 | 4_2:+51803735 | None:intergenic |
| TCTGTTCTCAAAGTAATCTT+TGG | 0.235135 | 4_2:+51803802 | None:intergenic |
| CTTTCCTCAAATTTGCTATA+TGG | 0.245307 | 4_2:+51807499 | None:intergenic |
| GGCCTTCTTAACCCTCTCTT+TGG | 0.286759 | 4_2:+51807374 | None:intergenic |
| TTCAGTCGTGCATCGGATTA+TGG | 0.294471 | 4_2:-51805759 | Msa0605750:intron |
| AAATGTTGCTTCCATTGTAT+TGG | 0.295734 | 4_2:-51806828 | Msa0605750:CDS |
| GTCACCATACATTGCATCTA+TGG | 0.295799 | 4_2:-51805269 | Msa0605750:CDS |
| TGCTAGCTCAGAAGCAATTT+CGG | 0.314259 | 4_2:+51804319 | None:intergenic |
| AGCAGGTGTAGCAGCTCTTT+TGG | 0.314559 | 4_2:+51806772 | None:intergenic |
| AATGTTGCTTCCATTGTATT+GGG | 0.317534 | 4_2:-51806827 | Msa0605750:CDS |
| GAACGTTCACGTTTGGATTA+CGG | 0.324212 | 4_2:-51804606 | Msa0605750:CDS |
| GTGTACGCGCGCAGAGTAGA+AGG | 0.324381 | 4_2:-51803706 | Msa0605750:three_prime_UTR |
| TGTCAAACCAAGATGCATTA+AGG | 0.343976 | 4_2:-51805291 | Msa0605750:CDS |
| CTCAGAAGCAATTTCGGATT+CGG | 0.345496 | 4_2:+51804325 | None:intergenic |
| TTTGTTGGTGGTAAGAATCT+TGG | 0.351797 | 4_2:+51804806 | None:intergenic |
| CTGTTACTTCCAATCCCAAT+AGG | 0.370914 | 4_2:+51804284 | None:intergenic |
| GCACAGGGAAAGGTTCCTAT+TGG | 0.371034 | 4_2:-51804299 | Msa0605750:CDS |
| GAATCTTGGAGATGTGAAAA+TGG | 0.376696 | 4_2:+51804820 | None:intergenic |
| CTGCATTTATCAATCTTTGT+TGG | 0.377402 | 4_2:+51804791 | None:intergenic |
| TGTGGGTGAACGTTCACGTT+TGG | 0.391042 | 4_2:-51804613 | Msa0605750:CDS |
| TTTGGAAATGGCATCAACTT+TGG | 0.391193 | 4_2:-51806531 | Msa0605750:CDS |
| GATTTCAGATCCAAAGTCAT+TGG | 0.397964 | 4_2:+51805186 | None:intergenic |
| CGGATGTAAAATCCATCTTC+TGG | 0.403798 | 4_2:+51803913 | None:intergenic |
| AGCAGACACAACACCAGGTT+TGG | 0.410213 | 4_2:+51807353 | None:intergenic |
| CATTGAGAATGTAATAATCT+TGG | 0.411542 | 4_2:-51806070 | Msa0605750:CDS |
| ACTCAAACGCCAGGAGAAGC+TGG | 0.413697 | 4_2:-51806168 | Msa0605750:CDS |
| ATTGTATTGGGAGGAGGTCC+TGG | 0.415190 | 4_2:-51806815 | Msa0605750:CDS |
| CACAGGGAAAGGTTCCTATT+GGG | 0.422057 | 4_2:-51804298 | Msa0605750:CDS |
| GGATTACGGTGTTGAGCTCC+AGG | 0.426885 | 4_2:-51804592 | Msa0605750:intron |
| AATCATTCCTGCATCTGTTA+AGG | 0.427773 | 4_2:-51805167 | Msa0605750:CDS |
| TACCTGTCGGTGGGTGCTAT+AGG | 0.436468 | 4_2:-51806662 | Msa0605750:CDS |
| AAGCAATTTCGGATTCGGTT+TGG | 0.438840 | 4_2:+51804330 | None:intergenic |
| TCCTTGGATGATTAATCAGT+TGG | 0.439153 | 4_2:-51807412 | Msa0605750:CDS |
| CACATCAATAAAATGATTGA+AGG | 0.441960 | 4_2:-51803621 | Msa0605750:three_prime_UTR |
| TTTACAGGACACTGTAATGA+TGG | 0.445727 | 4_2:-51804366 | Msa0605750:intron |
| GGAAAGGTTCCTATTGGGAT+TGG | 0.456229 | 4_2:-51804293 | Msa0605750:CDS |
| ATTGACAAGAATGCCAGGAT+TGG | 0.456643 | 4_2:-51804117 | Msa0605750:CDS |
| GCTTCCATTGTATTGGGAGG+AGG | 0.457513 | 4_2:-51806821 | Msa0605750:CDS |
| AGATCCAAAGTCATTGGATG+TGG | 0.463757 | 4_2:+51805192 | None:intergenic |
| TTTGGTTTCTCTATTGTACA+TGG | 0.464532 | 4_2:+51803761 | None:intergenic |
| CTGTTGATACAGTTGCTCAT+TGG | 0.465623 | 4_2:+51806627 | None:intergenic |
| CAACAAAGATTGATAAATGC+AGG | 0.467155 | 4_2:-51804790 | Msa0605750:CDS |
| TTGCATTCCTTAACAGATGC+AGG | 0.468552 | 4_2:+51805160 | None:intergenic |
| TTGACAAGAATGCCAGGATT+GGG | 0.469631 | 4_2:-51804116 | Msa0605750:CDS |
| GATTTAAGATCAGCACCCTT+AGG | 0.470111 | 4_2:+51805687 | None:intergenic |
| TTGGAAGTAACAGCAAAATC+AGG | 0.473432 | 4_2:-51804274 | Msa0605750:intron |
| ATCAGGAATCACAATTGTAA+TGG | 0.475871 | 4_2:-51803890 | Msa0605750:CDS |
| CATTTATCAATCTTTGTTGG+TGG | 0.476162 | 4_2:+51804794 | None:intergenic |
| GGATCATAAAATTTGAACAT+TGG | 0.476650 | 4_2:+51804851 | None:intergenic |
| TCTTGGTGAGAGAATCAAAC+GGG | 0.481456 | 4_2:-51807448 | Msa0605750:CDS |
| AACCAAAGAGAGGGTTAAGA+AGG | 0.486759 | 4_2:-51807376 | Msa0605750:CDS |
| GGGGTGTAAATTATAGTCCT+TGG | 0.487576 | 4_2:-51807428 | Msa0605750:CDS |
| TATCCCACATCCAATGACTT+TGG | 0.491448 | 4_2:-51805196 | Msa0605750:CDS |
| ATGCTGTGAGGCAATTTACA+TGG | 0.492795 | 4_2:-51806119 | Msa0605750:CDS |
| ATAACCATATAGCAAATTTG+AGG | 0.496126 | 4_2:-51807503 | Msa0605750:CDS |
| GATGTGAAAATGGGTGTCTT+GGG | 0.504166 | 4_2:+51804830 | None:intergenic |
| ATGGTGACCTTAATGCATCT+TGG | 0.504813 | 4_2:+51805284 | None:intergenic |
| AGATGTGAAAATGGGTGTCT+TGG | 0.510373 | 4_2:+51804829 | None:intergenic |
| GGGTGCTGATCTTAAATCAA+TGG | 0.510966 | 4_2:-51805682 | Msa0605750:intron |
| AGCCTATAGCACCCACCGAC+AGG | 0.511674 | 4_2:+51806660 | None:intergenic |
| CATGTGCTGCTGTTGGTGAC+AGG | 0.513782 | 4_2:-51805878 | Msa0605750:intron |
| GATGACATCTTTCCCAATCC+TGG | 0.514030 | 4_2:+51804104 | None:intergenic |
| CCTTGGATGATTAATCAGTT+GGG | 0.517935 | 4_2:-51807411 | Msa0605750:CDS |
| AATCTTGGAGATGTGAAAAT+GGG | 0.520261 | 4_2:+51804821 | None:intergenic |
| ACTCCCATAGATGCAATGTA+TGG | 0.523851 | 4_2:+51805265 | None:intergenic |
| GGATTACATGGACCTTGTGC+AGG | 0.524100 | 4_2:-51806025 | Msa0605750:intron |
| GCAATTTACATGGGTATTCG+AGG | 0.524909 | 4_2:-51806109 | Msa0605750:CDS |
| AAGATTACTTTGAGAACAGA+AGG | 0.526225 | 4_2:-51803799 | Msa0605750:three_prime_UTR |
| TTGGCGGCTACTCAAACGCC+AGG | 0.530303 | 4_2:-51806177 | Msa0605750:CDS |
| GAAGCAGATAGACCAGAAGA+TGG | 0.532366 | 4_2:-51803925 | Msa0605750:CDS |
| TGGTGATCATCTATATAGAA+TGG | 0.536677 | 4_2:-51806046 | Msa0605750:CDS |
| GTTGTACACTACATTCTCTC+AGG | 0.537660 | 4_2:+51804643 | None:intergenic |
| AATTGCTTCTGAGCTAGCAC+AGG | 0.540855 | 4_2:-51804315 | Msa0605750:CDS |
| AATGGCATCAACTTTGGAGA+TGG | 0.542455 | 4_2:-51806525 | Msa0605750:CDS |
| TACTCAAGCTTCTAAAATGG+AGG | 0.545196 | 4_2:-51805219 | Msa0605750:CDS |
| GGAGACTATTGGGAAGACAT+TGG | 0.550910 | 4_2:-51805020 | Msa0605750:CDS |
| CTCAAACGCCAGGAGAAGCT+GGG | 0.551829 | 4_2:-51806167 | Msa0605750:CDS |
| GTATAATTGACAAGAATGCC+AGG | 0.558591 | 4_2:-51804122 | Msa0605750:CDS |
| TTCTGAGCTAGCACAGGGAA+AGG | 0.561514 | 4_2:-51804309 | Msa0605750:CDS |
| TCTATATAGAATGGATTACA+TGG | 0.561991 | 4_2:-51806037 | Msa0605750:CDS |
| TGTCATATAAGTGGCTAGCA+TGG | 0.566975 | 4_2:-51803842 | Msa0605750:exon |
| TCACCATACATTGCATCTAT+GGG | 0.568354 | 4_2:-51805268 | Msa0605750:CDS |
| GATAAATGATGGAACCTGAA+AGG | 0.574662 | 4_2:+51806871 | None:intergenic |
| AGGGTTAAGAAGGCCAAACC+TGG | 0.576523 | 4_2:-51807366 | Msa0605750:CDS |
| TTACAGGACACTGTAATGAT+GGG | 0.576561 | 4_2:-51804365 | Msa0605750:intron |
| CCCAACTGATTAATCATCCA+AGG | 0.580151 | 4_2:+51807411 | None:intergenic |
| AATGGAGAAAGCGACAATAG+AGG | 0.583953 | 4_2:-51803872 | Msa0605750:CDS |
| TTACAATTGTGATTCCTGAT+CGG | 0.588358 | 4_2:+51803893 | None:intergenic |
| GGACGGCACTGTCATATAAG+TGG | 0.592247 | 4_2:-51803851 | Msa0605750:exon |
| GAGAATGTAATAATCTTGGC+TGG | 0.593829 | 4_2:-51806066 | Msa0605750:CDS |
| AGTGTACAACACTCCATTGT+GGG | 0.594262 | 4_2:-51804630 | Msa0605750:CDS |
| CAACTTTGGAGATGGATATG+TGG | 0.599466 | 4_2:-51806517 | Msa0605750:CDS |
| ACAGTATCATGTGCTGCTGT+TGG | 0.599712 | 4_2:-51805885 | Msa0605750:CDS |
| ACGTGAACGTTCACCCACAA+TGG | 0.600506 | 4_2:+51804617 | None:intergenic |
| AACAAAGATTGATAAATGCA+GGG | 0.604087 | 4_2:-51804789 | Msa0605750:intron |
| TGTACGCGCGCAGAGTAGAA+GGG | 0.606979 | 4_2:-51803705 | Msa0605750:three_prime_UTR |
| GTTGCTTCCATTGTATTGGG+AGG | 0.607715 | 4_2:-51806824 | Msa0605750:CDS |
| TAACATGGCTCTTACTGAAG+AGG | 0.608858 | 4_2:-51804973 | Msa0605750:intron |
| TAAGTTTGAGAACCAAAGAG+AGG | 0.613319 | 4_2:-51807386 | Msa0605750:CDS |
| TTCTTGGTGAGAGAATCAAA+CGG | 0.617258 | 4_2:-51807449 | Msa0605750:CDS |
| AGGACCTCCTCCCAATACAA+TGG | 0.628390 | 4_2:+51806817 | None:intergenic |
| GATCCAAAGTCATTGGATGT+GGG | 0.628997 | 4_2:+51805193 | None:intergenic |
| AGAACAGCAGACACAACACC+AGG | 0.631071 | 4_2:+51807348 | None:intergenic |
| TGCTGTGAGGCAATTTACAT+GGG | 0.632280 | 4_2:-51806118 | Msa0605750:CDS |
| AAGTTTGAGAACCAAAGAGA+GGG | 0.633814 | 4_2:-51807385 | Msa0605750:CDS |
| ATCGGATTATGGATTAGTCA+AGG | 0.640623 | 4_2:-51805748 | Msa0605750:CDS |
| CTTTGGAGATGGATATGTGG+AGG | 0.648283 | 4_2:-51806514 | Msa0605750:intron |
| AATAGGTGCGAGCAATGTGA+CGG | 0.649705 | 4_2:+51806553 | None:intergenic |
| TTAGTCAAGGTAGATAGCAG+AGG | 0.651808 | 4_2:-51805735 | Msa0605750:CDS |
| GTGGATGCAATAATCTCGCA+TGG | 0.664341 | 4_2:-51804672 | Msa0605750:CDS |
| TAGTGTACAACACTCCATTG+TGG | 0.667376 | 4_2:-51804631 | Msa0605750:CDS |
| ATTGCTTCTGAGCTAGCACA+GGG | 0.674782 | 4_2:-51804314 | Msa0605750:CDS |
| AAATTGGTTTCAAGGAACAG+CGG | 0.676116 | 4_2:-51806142 | Msa0605750:CDS |
| CTTGGTGAGAGAATCAAACG+GGG | 0.681586 | 4_2:-51807447 | Msa0605750:CDS |
| AAGGAACAGCGGATGCTGTG+AGG | 0.682609 | 4_2:-51806131 | Msa0605750:CDS |
| GAGAAAGCGACAATAGAGGA+CGG | 0.689943 | 4_2:-51803868 | Msa0605750:CDS |
| ATGAGCAACTGTATCAACAG+TGG | 0.698720 | 4_2:-51806624 | Msa0605750:CDS |
| AATAATTGAATACCTGCACA+AGG | 0.713289 | 4_2:+51806013 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATTATGATCAAATT+AGG | + | chr4_2:51805762-51805781 | None:intergenic | 10.0% |
| !!! | CATAATATATTTATCTTTTT+TGG | - | chr4_2:51805770-51805789 | Msa0605750:intron | 10.0% |
| !!! | AAAATTTTGTTTTAAATGTT+AGG | + | chr4_2:51806762-51806781 | None:intergenic | 10.0% |
| !!! | AATATTTTTCATCATGATAA+TGG | - | chr4_2:51803671-51803690 | Msa0605750:three_prime_UTR | 15.0% |
| !!! | AAAAAATATTTTAACGCTTA+TGG | - | chr4_2:51804141-51804160 | Msa0605750:intron | 15.0% |
| !! | AAAAACGAAAAACATTTAAA+AGG | + | chr4_2:51805310-51805329 | None:intergenic | 15.0% |
| !! | TGATTATTAAAACACTTTAA+AGG | + | chr4_2:51806039-51806058 | None:intergenic | 15.0% |
| !!! | CATTTAAAACAAAATTTTAC+AGG | - | chr4_2:51806764-51806783 | Msa0605750:intron | 15.0% |
| !! | AAAAGAAATATATGGTAAAA+GGG | + | chr4_2:51807095-51807114 | None:intergenic | 15.0% |
| !! | TAAAAGAAATATATGGTAAA+AGG | + | chr4_2:51807096-51807115 | None:intergenic | 15.0% |
| !! | TCAAATGTAAAAGAAATATA+TGG | + | chr4_2:51807103-51807122 | None:intergenic | 15.0% |
| !! | ACATATATATAAACAAAAAG+GGG | + | chr4_2:51807411-51807430 | None:intergenic | 15.0% |
| !! | CACATATATATAAACAAAAA+GGG | + | chr4_2:51807412-51807431 | None:intergenic | 15.0% |
| !! | ACACATATATATAAACAAAA+AGG | + | chr4_2:51807413-51807432 | None:intergenic | 15.0% |
| !! | AAATTTAGCTACATAATATC+AGG | + | chr4_2:51804197-51804216 | None:intergenic | 20.0% |
| !! | TTGAACTTTAATAAATGTAC+AGG | + | chr4_2:51805494-51805513 | None:intergenic | 20.0% |
| !! | TTTAACGAAATGTATTTGAA+AGG | - | chr4_2:51805616-51805635 | Msa0605750:intron | 20.0% |
| !! | TTAACGAAATGTATTTGAAA+GGG | - | chr4_2:51805617-51805636 | Msa0605750:intron | 20.0% |
| !!! | TTTTGTTTTGTTTTTGTATC+AGG | + | chr4_2:51805677-51805696 | None:intergenic | 20.0% |
| !! | AAAACAAAAAAAGACTTAGA+GGG | - | chr4_2:51805688-51805707 | Msa0605750:CDS | 20.0% |
| !! | AAAAAAAATGCCTGAAAAAA+AGG | + | chr4_2:51806104-51806123 | None:intergenic | 20.0% |
| !!! | TTTTTTCAGGCATTTTTTTT+CGG | - | chr4_2:51806104-51806123 | Msa0605750:CDS | 20.0% |
| !! | AAAGAAATATATGGTAAAAG+GGG | + | chr4_2:51807094-51807113 | None:intergenic | 20.0% |
| !! | CATATATATAAACAAAAAGG+GGG | + | chr4_2:51807410-51807429 | None:intergenic | 20.0% |
| !!! | CAAATTTGCTATATGGTTAT+TGG | + | chr4_2:51803642-51803661 | None:intergenic | 25.0% |
| ! | ATAACCATATAGCAAATTTG+AGG | - | chr4_2:51803642-51803661 | Msa0605750:three_prime_UTR | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+CGG | - | chr4_2:51803984-51804003 | Msa0605750:intron | 25.0% |
| ! | TGATTCTTATGTTCTTATTG+TGG | - | chr4_2:51804238-51804257 | Msa0605750:intron | 25.0% |
| !! | GCTTTTATTCTGATAAATGA+TGG | + | chr4_2:51804288-51804307 | None:intergenic | 25.0% |
| !! | TGATACTGTTTACATTTTTC+AGG | - | chr4_2:51804460-51804479 | Msa0605750:intron | 25.0% |
| !!! | ATAAACTTGCTAAGCTAATA+TGG | - | chr4_2:51804696-51804715 | Msa0605750:intron | 25.0% |
| ! | TTCATTTCGTTTCAAAACAT+TGG | + | chr4_2:51804882-51804901 | None:intergenic | 25.0% |
| ! | AATGAATAATGTCATGATGA+AGG | - | chr4_2:51804896-51804915 | Msa0605750:intron | 25.0% |
| ! | CATTGAGAATGTAATAATCT+TGG | - | chr4_2:51805075-51805094 | Msa0605750:intron | 25.0% |
| !!! | TCTATATAGAATGGATTACA+TGG | - | chr4_2:51805108-51805127 | Msa0605750:intron | 25.0% |
| ! | AAATGTATTTGAAAGGGTAA+CGG | - | chr4_2:51805623-51805642 | Msa0605750:intron | 25.0% |
| ! | CAAAACAAAAAAAGACTTAG+AGG | - | chr4_2:51805687-51805706 | Msa0605750:CDS | 25.0% |
| !!! | TTTTACTCAAGCTTCTAAAA+TGG | - | chr4_2:51805923-51805942 | Msa0605750:intron | 25.0% |
| ! | ATAGTGTAATTTCTCTTACT+TGG | + | chr4_2:51806014-51806033 | None:intergenic | 25.0% |
| !! | TTTTAATAATCACTCCTTTC+TGG | - | chr4_2:51806047-51806066 | Msa0605750:CDS | 25.0% |
| !!! | ATTTGTTTTGCCTTTTTTTC+AGG | - | chr4_2:51806091-51806110 | Msa0605750:CDS | 25.0% |
| !!! | ATTTTTTTTCGGAGACTATT+GGG | - | chr4_2:51806115-51806134 | Msa0605750:CDS | 25.0% |
| !! | AACAATGTTAGTTTCATGAT+AGG | + | chr4_2:51806253-51806272 | None:intergenic | 25.0% |
| ! | GGATCATAAAATTTGAACAT+TGG | + | chr4_2:51806297-51806316 | None:intergenic | 25.0% |
| ! | AACAAAGATTGATAAATGCA+GGG | - | chr4_2:51806356-51806375 | Msa0605750:intron | 25.0% |
| ! | ATGAATGTTCAATATTCTAC+AGG | + | chr4_2:51806966-51806985 | None:intergenic | 25.0% |
| !!! | ATTCAAATGCTTTGTTTGTA+GGG | - | chr4_2:51807190-51807209 | Msa0605750:intron | 25.0% |
| !!! | GTTCTATTTTTACATGTAGT+GGG | + | chr4_2:51807471-51807490 | None:intergenic | 25.0% |
| ! | CACATCAATAAAATGATTGA+AGG | - | chr4_2:51807524-51807543 | Msa0605750:CDS | 25.0% |
| !! | CTTTCCTCAAATTTGCTATA+TGG | + | chr4_2:51803649-51803668 | None:intergenic | 30.0% |
| !!! | CATCATGATAATGGTTTTCT+TGG | - | chr4_2:51803680-51803699 | Msa0605750:three_prime_UTR | 30.0% |
| ATCTTAATTCAAAACCACGA+CGG | + | chr4_2:51803875-51803894 | None:intergenic | 30.0% | |
| ! | TTTTTCCGCAATACAAAAGT+TGG | + | chr4_2:51803917-51803936 | None:intergenic | 30.0% |
| TTTGTATTGCGGAAAAATCT+TGG | - | chr4_2:51803920-51803939 | Msa0605750:CDS | 30.0% | |
| AAATTATGGCCGCAATATAA+AGG | + | chr4_2:51803996-51804015 | None:intergenic | 30.0% | |
| ! | TTATATTGCGGCCATAATTT+TGG | - | chr4_2:51803996-51804015 | Msa0605750:intron | 30.0% |
| TCAGCTATAGTGGTAAAAAA+TGG | + | chr4_2:51804051-51804070 | None:intergenic | 30.0% | |
| AATATCAGGAACAAAGTCTT+CGG | + | chr4_2:51804183-51804202 | None:intergenic | 30.0% | |
| !!! | CAATGGAAGCAACATTTTTT+GGG | + | chr4_2:51804314-51804333 | None:intergenic | 30.0% |
| !!! | ACAATGGAAGCAACATTTTT+TGG | + | chr4_2:51804315-51804334 | None:intergenic | 30.0% |
| ! | AAATGTTGCTTCCATTGTAT+TGG | - | chr4_2:51804317-51804336 | Msa0605750:CDS | 30.0% |
| ! | AATGTTGCTTCCATTGTATT+GGG | - | chr4_2:51804318-51804337 | Msa0605750:CDS | 30.0% |
| ATTCTCAATGTTAGTGTTCT+TGG | + | chr4_2:51805065-51805084 | None:intergenic | 30.0% | |
| TGGTGATCATCTATATAGAA+TGG | - | chr4_2:51805099-51805118 | Msa0605750:intron | 30.0% | |
| AATAATTGAATACCTGCACA+AGG | + | chr4_2:51805135-51805154 | None:intergenic | 30.0% | |
| ! | CAATTTTCGGAAAAACCTAA+GGG | - | chr4_2:51805443-51805462 | Msa0605750:intron | 30.0% |
| AAAGACTTAGAGGGTTAATA+TGG | - | chr4_2:51805697-51805716 | Msa0605750:CDS | 30.0% | |
| !!! | CATTTTTTTTCGGAGACTAT+TGG | - | chr4_2:51806114-51806133 | Msa0605750:CDS | 30.0% |
| ! | ATCATTTTACGATGCTAACA+TGG | - | chr4_2:51806157-51806176 | Msa0605750:CDS | 30.0% |
| AATCTTGGAGATGTGAAAAT+GGG | + | chr4_2:51806327-51806346 | None:intergenic | 30.0% | |
| CATTTATCAATCTTTGTTGG+TGG | + | chr4_2:51806354-51806373 | None:intergenic | 30.0% | |
| CTGCATTTATCAATCTTTGT+TGG | + | chr4_2:51806357-51806376 | None:intergenic | 30.0% | |
| CAACAAAGATTGATAAATGC+AGG | - | chr4_2:51806355-51806374 | Msa0605750:intron | 30.0% | |
| AGAAATTATGGTAGTTTACC+TGG | + | chr4_2:51806574-51806593 | None:intergenic | 30.0% | |
| GGTAAACTACCATAATTTCT+TGG | - | chr4_2:51806574-51806593 | Msa0605750:CDS | 30.0% | |
| GCAATTAATGATTGACATTG+TGG | - | chr4_2:51806640-51806659 | Msa0605750:CDS | 30.0% | |
| GTTCAATATTCTACAGGTTA+TGG | + | chr4_2:51806960-51806979 | None:intergenic | 30.0% | |
| !! | TTACTTGTTGTCTTTGTTGA+AGG | - | chr4_2:51806996-51807015 | Msa0605750:intron | 30.0% |
| ! | TTTGAGTCCATTTTGTTAGT+TGG | - | chr4_2:51807118-51807137 | Msa0605750:intron | 30.0% |
| AAAACCACCAACTAACAAAA+TGG | + | chr4_2:51807128-51807147 | None:intergenic | 30.0% | |
| ! | CTACAAACAAAGCATTTGAA+TGG | + | chr4_2:51807191-51807210 | None:intergenic | 30.0% |
| !! | CATTCAAATGCTTTGTTTGT+AGG | - | chr4_2:51807189-51807208 | Msa0605750:intron | 30.0% |
| TTACAATTGTGATTCCTGAT+CGG | + | chr4_2:51807255-51807274 | None:intergenic | 30.0% | |
| ATCAGGAATCACAATTGTAA+TGG | - | chr4_2:51807255-51807274 | Msa0605750:intron | 30.0% | |
| TCTGTTCTCAAAGTAATCTT+TGG | + | chr4_2:51807346-51807365 | None:intergenic | 30.0% | |
| ! | AAGATTACTTTGAGAACAGA+AGG | - | chr4_2:51807346-51807365 | Msa0605750:intron | 30.0% |
| ! | TTTGGTTTCTCTATTGTACA+TGG | + | chr4_2:51807387-51807406 | None:intergenic | 30.0% |
| ATATAAACAAAAAGGGGGTT+TGG | + | chr4_2:51807405-51807424 | None:intergenic | 30.0% | |
| !! | TATTTTTACATGTAGTGGGA+GGG | + | chr4_2:51807467-51807486 | None:intergenic | 30.0% |
| !!! | CGTTCTATTTTTACATGTAG+TGG | + | chr4_2:51807472-51807491 | None:intergenic | 30.0% |
| TTCTTGGTGAGAGAATCAAA+CGG | - | chr4_2:51803696-51803715 | Msa0605750:three_prime_UTR | 35.0% | |
| TCCTTGGATGATTAATCAGT+TGG | - | chr4_2:51803733-51803752 | Msa0605750:three_prime_UTR | 35.0% | |
| CCTTGGATGATTAATCAGTT+GGG | - | chr4_2:51803734-51803753 | Msa0605750:three_prime_UTR | 35.0% | |
| TAAGTTTGAGAACCAAAGAG+AGG | - | chr4_2:51803759-51803778 | Msa0605750:three_prime_UTR | 35.0% | |
| AAGTTTGAGAACCAAAGAGA+GGG | - | chr4_2:51803760-51803779 | Msa0605750:three_prime_UTR | 35.0% | |
| ! | TTTTACCACTATAGCTGATG+TGG | - | chr4_2:51804053-51804072 | Msa0605750:intron | 35.0% |
| ! | ACATAAAAGATTTTGCACCG+CGG | + | chr4_2:51804091-51804110 | None:intergenic | 35.0% |
| ATATCAGGAACAAAGTCTTC+GGG | + | chr4_2:51804182-51804201 | None:intergenic | 35.0% | |
| ! | GATAAATGATGGAACCTGAA+AGG | + | chr4_2:51804277-51804296 | None:intergenic | 35.0% |
| ! | CTCTTTTGGTAAGAGGAAAA+AGG | + | chr4_2:51804362-51804381 | None:intergenic | 35.0% |
| CTGTGAGTAAATCATTGTCT+TGG | - | chr4_2:51804394-51804413 | Msa0605750:intron | 35.0% | |
| ATTGTCTTGGTTGACTAAAC+AGG | - | chr4_2:51804407-51804426 | Msa0605750:intron | 35.0% | |
| !!! | TACATTTTTCAGGTACCTGT+CGG | - | chr4_2:51804470-51804489 | Msa0605750:intron | 35.0% |
| ! | GTTGATGCCATTTCCAAAAT+AGG | + | chr4_2:51804612-51804631 | None:intergenic | 35.0% |
| TTTGGAAATGGCATCAACTT+TGG | - | chr4_2:51804614-51804633 | Msa0605750:CDS | 35.0% | |
| ! | ATATGTGGAGGTATGTATCA+AGG | - | chr4_2:51804643-51804662 | Msa0605750:CDS | 35.0% |
| ! | AAATTGGTTTCAAGGAACAG+CGG | - | chr4_2:51805003-51805022 | Msa0605750:CDS | 35.0% |
| GAGAATGTAATAATCTTGGC+TGG | - | chr4_2:51805079-51805098 | Msa0605750:intron | 35.0% | |
| !! | ATCGGATTATGGATTAGTCA+AGG | - | chr4_2:51805397-51805416 | Msa0605750:intron | 35.0% |
| ! | CCTTAGGTTTTTCCGAAAAT+TGG | + | chr4_2:51805445-51805464 | None:intergenic | 35.0% |
| ! | CCAATTTTCGGAAAAACCTA+AGG | - | chr4_2:51805442-51805461 | Msa0605750:intron | 35.0% |
| TAGTTTATTCTCTTGCCTCT+TGG | - | chr4_2:51805520-51805539 | Msa0605750:intron | 35.0% | |
| AGTTTATTCTCTTGCCTCTT+GGG | - | chr4_2:51805521-51805540 | Msa0605750:intron | 35.0% | |
| TCTTCATTACGTGACAGAAA+CGG | + | chr4_2:51805577-51805596 | None:intergenic | 35.0% | |
| !!! | CGCAAACGTTTTAAGACTTA+AGG | - | chr4_2:51805646-51805665 | Msa0605750:intron | 35.0% |
| GGTACAATGAGATAACTCAA+AGG | - | chr4_2:51805718-51805737 | Msa0605750:CDS | 35.0% | |
| TCAGAAACACATGACTATAG+AGG | + | chr4_2:51805796-51805815 | None:intergenic | 35.0% | |
| GTTTGACAATCCAAAAAGAG+AGG | + | chr4_2:51805842-51805861 | None:intergenic | 35.0% | |
| TGTCAAACCAAGATGCATTA+AGG | - | chr4_2:51805854-51805873 | Msa0605750:intron | 35.0% | |
| TCACCATACATTGCATCTAT+GGG | - | chr4_2:51805877-51805896 | Msa0605750:intron | 35.0% | |
| !! | TACTCAAGCTTCTAAAATGG+AGG | - | chr4_2:51805926-51805945 | Msa0605750:intron | 35.0% |
| GATTTCAGATCCAAAGTCAT+TGG | + | chr4_2:51805962-51805981 | None:intergenic | 35.0% | |
| AATCATTCCTGCATCTGTTA+AGG | - | chr4_2:51805978-51805997 | Msa0605750:intron | 35.0% | |
| TAATAATCACTCCTTTCTGG+AGG | - | chr4_2:51806050-51806069 | Msa0605750:CDS | 35.0% | |
| TTGTATTGTTACCTCCAGAA+AGG | + | chr4_2:51806064-51806083 | None:intergenic | 35.0% | |
| GAATCTTGGAGATGTGAAAA+TGG | + | chr4_2:51806328-51806347 | None:intergenic | 35.0% | |
| !! | TTTGTTGGTGGTAAGAATCT+TGG | + | chr4_2:51806342-51806361 | None:intergenic | 35.0% |
| GACATCTAATGAAAACGAAG+AGG | + | chr4_2:51806419-51806438 | None:intergenic | 35.0% | |
| TACAAAGAGCAACTCAAACA+TGG | + | chr4_2:51806449-51806468 | None:intergenic | 35.0% | |
| !!! | AGAACCAAGGTTTTAAACTG+AGG | - | chr4_2:51806610-51806629 | Msa0605750:CDS | 35.0% |
| TTTACAGGACACTGTAATGA+TGG | - | chr4_2:51806779-51806798 | Msa0605750:CDS | 35.0% | |
| TTACAGGACACTGTAATGAT+GGG | - | chr4_2:51806780-51806799 | Msa0605750:CDS | 35.0% | |
| TTGGAAGTAACAGCAAAATC+AGG | - | chr4_2:51806871-51806890 | Msa0605750:CDS | 35.0% | |
| !! | GGTTATGGTATGCTATTTCT+TGG | + | chr4_2:51806945-51806964 | None:intergenic | 35.0% |
| GTATAATTGACAAGAATGCC+AGG | - | chr4_2:51807023-51807042 | Msa0605750:intron | 35.0% | |
| !!! | CTATTTTTACATGTAGTGGG+AGG | + | chr4_2:51807468-51807487 | None:intergenic | 35.0% |
| TCTTGGTGAGAGAATCAAAC+GGG | - | chr4_2:51803697-51803716 | Msa0605750:three_prime_UTR | 40.0% | |
| GGGGTGTAAATTATAGTCCT+TGG | - | chr4_2:51803717-51803736 | Msa0605750:three_prime_UTR | 40.0% | |
| CCCAACTGATTAATCATCCA+AGG | + | chr4_2:51803737-51803756 | None:intergenic | 40.0% | |
| AACCAAAGAGAGGGTTAAGA+AGG | - | chr4_2:51803769-51803788 | Msa0605750:three_prime_UTR | 40.0% | |
| AAATGATGCCGTTGAGACTA+AGG | - | chr4_2:51803826-51803845 | Msa0605750:three_prime_UTR | 40.0% | |
| TCAGCTTACCTTAGTCTCAA+CGG | + | chr4_2:51803837-51803856 | None:intergenic | 40.0% | |
| AGGTAAGCTGAATCATGTTG+AGG | - | chr4_2:51803846-51803865 | Msa0605750:exon | 40.0% | |
| GGTAAGCTGAATCATGTTGA+GGG | - | chr4_2:51803847-51803866 | Msa0605750:exon | 40.0% | |
| GTAAGCTGAATCATGTTGAG+GGG | - | chr4_2:51803848-51803867 | Msa0605750:exon | 40.0% | |
| ! | CACTGCCAACTTTTGTATTG+CGG | - | chr4_2:51803909-51803928 | Msa0605750:CDS | 40.0% |
| GTGGTCCACAACCAAAATTA+TGG | + | chr4_2:51804010-51804029 | None:intergenic | 40.0% | |
| ! | TGGACCACAGTTTAAAACCA+TGG | - | chr4_2:51804022-51804041 | Msa0605750:intron | 40.0% |
| ! | GGACCACAGTTTAAAACCAT+GGG | - | chr4_2:51804023-51804042 | Msa0605750:intron | 40.0% |
| !!! | GATCCCATGGTTTTAAACTG+TGG | + | chr4_2:51804029-51804048 | None:intergenic | 40.0% |
| GTGGTAAAAAATGGATCCCA+TGG | + | chr4_2:51804042-51804061 | None:intergenic | 40.0% | |
| GACAATGATTTACTCACAGC+AGG | + | chr4_2:51804393-51804412 | None:intergenic | 40.0% | |
| ! | GACTAAACAGGCATCAGTTT+TGG | - | chr4_2:51804419-51804438 | Msa0605750:intron | 40.0% |
| CTGTTGATACAGTTGCTCAT+TGG | + | chr4_2:51804521-51804540 | None:intergenic | 40.0% | |
| ATGAGCAACTGTATCAACAG+TGG | - | chr4_2:51804521-51804540 | Msa0605750:intron | 40.0% | |
| ! | AATGGCATCAACTTTGGAGA+TGG | - | chr4_2:51804620-51804639 | Msa0605750:CDS | 40.0% |
| ! | CAACTTTGGAGATGGATATG+TGG | - | chr4_2:51804628-51804647 | Msa0605750:CDS | 40.0% |
| ! | GGAGGTATGTATCAAGGAAT+TGG | - | chr4_2:51804649-51804668 | Msa0605750:CDS | 40.0% |
| CTATCGTGTGTTCGATTTCA+TGG | + | chr4_2:51804945-51804964 | None:intergenic | 40.0% | |
| CATGAAATCGAACACACGAT+AGG | - | chr4_2:51804943-51804962 | Msa0605750:intron | 40.0% | |
| ! | ATCGAACACACGATAGGTTT+TGG | - | chr4_2:51804949-51804968 | Msa0605750:intron | 40.0% |
| ! | GCTGGGAAAAATTGGTTTCA+AGG | - | chr4_2:51804995-51805014 | Msa0605750:CDS | 40.0% |
| ATGCTGTGAGGCAATTTACA+TGG | - | chr4_2:51805026-51805045 | Msa0605750:CDS | 40.0% | |
| TGCTGTGAGGCAATTTACAT+GGG | - | chr4_2:51805027-51805046 | Msa0605750:CDS | 40.0% | |
| GCAATTTACATGGGTATTCG+AGG | - | chr4_2:51805036-51805055 | Msa0605750:intron | 40.0% | |
| TTAGTCAAGGTAGATAGCAG+AGG | - | chr4_2:51805410-51805429 | Msa0605750:intron | 40.0% | |
| ! | AGGTCGCATCATCCAATTTT+CGG | - | chr4_2:51805430-51805449 | Msa0605750:intron | 40.0% |
| ! | GATTTAAGATCAGCACCCTT+AGG | + | chr4_2:51805461-51805480 | None:intergenic | 40.0% |
| !! | GGGTGCTGATCTTAAATCAA+TGG | - | chr4_2:51805463-51805482 | Msa0605750:intron | 40.0% |
| ! | CAAGCAGATACCTCTCTTTT+TGG | - | chr4_2:51805829-51805848 | Msa0605750:intron | 40.0% |
| ATGGTGACCTTAATGCATCT+TGG | + | chr4_2:51805864-51805883 | None:intergenic | 40.0% | |
| GTCACCATACATTGCATCTA+TGG | - | chr4_2:51805876-51805895 | Msa0605750:intron | 40.0% | |
| ACTCCCATAGATGCAATGTA+TGG | + | chr4_2:51805883-51805902 | None:intergenic | 40.0% | |
| TATCCCACATCCAATGACTT+TGG | - | chr4_2:51805949-51805968 | Msa0605750:intron | 40.0% | |
| GATCCAAAGTCATTGGATGT+GGG | + | chr4_2:51805955-51805974 | None:intergenic | 40.0% | |
| AGATCCAAAGTCATTGGATG+TGG | + | chr4_2:51805956-51805975 | None:intergenic | 40.0% | |
| TTGCATTCCTTAACAGATGC+AGG | + | chr4_2:51805988-51806007 | None:intergenic | 40.0% | |
| TAACATGGCTCTTACTGAAG+AGG | - | chr4_2:51806172-51806191 | Msa0605750:CDS | 40.0% | |
| GATGTGAAAATGGGTGTCTT+GGG | + | chr4_2:51806318-51806337 | None:intergenic | 40.0% | |
| AGATGTGAAAATGGGTGTCT+TGG | + | chr4_2:51806319-51806338 | None:intergenic | 40.0% | |
| GAGTTGCTCTTTGTAGATTG+TGG | - | chr4_2:51806454-51806473 | Msa0605750:intron | 40.0% | |
| GTTGTACACTACATTCTCTC+AGG | + | chr4_2:51806505-51806524 | None:intergenic | 40.0% | |
| TAGTGTACAACACTCCATTG+TGG | - | chr4_2:51806514-51806533 | Msa0605750:intron | 40.0% | |
| AGTGTACAACACTCCATTGT+GGG | - | chr4_2:51806515-51806534 | Msa0605750:CDS | 40.0% | |
| GAACGTTCACGTTTGGATTA+CGG | - | chr4_2:51806539-51806558 | Msa0605750:CDS | 40.0% | |
| ! | GCTACCTCAGTTTAAAACCT+TGG | + | chr4_2:51806617-51806636 | None:intergenic | 40.0% |
| !! | AGTTTTCTAGCCAAGCCTTA+GGG | + | chr4_2:51806722-51806741 | None:intergenic | 40.0% |
| !! | TAGTTTTCTAGCCAAGCCTT+AGG | + | chr4_2:51806723-51806742 | None:intergenic | 40.0% |
| ! | AAGCAATTTCGGATTCGGTT+TGG | + | chr4_2:51806818-51806837 | None:intergenic | 40.0% |
| CTCAGAAGCAATTTCGGATT+CGG | + | chr4_2:51806823-51806842 | None:intergenic | 40.0% | |
| TGCTAGCTCAGAAGCAATTT+CGG | + | chr4_2:51806829-51806848 | None:intergenic | 40.0% | |
| ! | CTGTTACTTCCAATCCCAAT+AGG | + | chr4_2:51806864-51806883 | None:intergenic | 40.0% |
| ATTGACAAGAATGCCAGGAT+TGG | - | chr4_2:51807028-51807047 | Msa0605750:intron | 40.0% | |
| TTGACAAGAATGCCAGGATT+GGG | - | chr4_2:51807029-51807048 | Msa0605750:intron | 40.0% | |
| CATGAACAAAGATGTGAGCA+TGG | - | chr4_2:51807066-51807085 | Msa0605750:intron | 40.0% | |
| ! | GAGTCCATTTTGTTAGTTGG+TGG | - | chr4_2:51807121-51807140 | Msa0605750:intron | 40.0% |
| CGGATGTAAAATCCATCTTC+TGG | + | chr4_2:51807235-51807254 | None:intergenic | 40.0% | |
| !! | GATGGATTTTACATCCGATC+AGG | - | chr4_2:51807238-51807257 | Msa0605750:intron | 40.0% |
| AATGGAGAAAGCGACAATAG+AGG | - | chr4_2:51807273-51807292 | Msa0605750:intron | 40.0% | |
| TGTCATATAAGTGGCTAGCA+TGG | - | chr4_2:51807303-51807322 | Msa0605750:intron | 40.0% | |
| CTTGGTGAGAGAATCAAACG+GGG | - | chr4_2:51803698-51803717 | Msa0605750:three_prime_UTR | 45.0% | |
| CGGAAAAATCTTGGAAAGCG+CGG | - | chr4_2:51803929-51803948 | Msa0605750:CDS | 45.0% | |
| !!! | TGCGGCCATAATTTTGGTTG+TGG | - | chr4_2:51804002-51804021 | Msa0605750:intron | 45.0% |
| GTGTCAACTTCAGACCTTTC+AGG | - | chr4_2:51804260-51804279 | Msa0605750:intron | 45.0% | |
| GTTGCTTCCATTGTATTGGG+AGG | - | chr4_2:51804321-51804340 | Msa0605750:CDS | 45.0% | |
| AGAGGAAAAAGGTGAACACC+AGG | + | chr4_2:51804351-51804370 | None:intergenic | 45.0% | |
| ! | GTAGCAGCTCTTTTGGTAAG+AGG | + | chr4_2:51804369-51804388 | None:intergenic | 45.0% |
| !!! | ATTTTTCAGGTACCTGTCGG+TGG | - | chr4_2:51804473-51804492 | Msa0605750:intron | 45.0% |
| !!! | TTTTTCAGGTACCTGTCGGT+GGG | - | chr4_2:51804474-51804493 | Msa0605750:intron | 45.0% |
| AATAGGTGCGAGCAATGTGA+CGG | + | chr4_2:51804595-51804614 | None:intergenic | 45.0% | |
| ! | CACATTGCTCGCACCTATTT+TGG | - | chr4_2:51804596-51804615 | Msa0605750:CDS | 45.0% |
| !! | GCTCGCACCTATTTTGGAAA+TGG | - | chr4_2:51804602-51804621 | Msa0605750:CDS | 45.0% |
| ! | CTTTGGAGATGGATATGTGG+AGG | - | chr4_2:51804631-51804650 | Msa0605750:CDS | 45.0% |
| !! | GAACACACGATAGGTTTTGG+CGG | - | chr4_2:51804952-51804971 | Msa0605750:intron | 45.0% |
| ! | CAATTTTTCCCAGCTTCTCC+TGG | + | chr4_2:51804989-51805008 | None:intergenic | 45.0% |
| CAGGAGAAGCTGGGAAAAAT+TGG | - | chr4_2:51804987-51805006 | Msa0605750:CDS | 45.0% | |
| ! | ACAGTATCATGTGCTGCTGT+TGG | - | chr4_2:51805260-51805279 | Msa0605750:CDS | 45.0% |
| !! | TCTGCTTTTCAGTCGTGCAT+CGG | - | chr4_2:51805379-51805398 | Msa0605750:intron | 45.0% |
| TTCAGTCGTGCATCGGATTA+TGG | - | chr4_2:51805386-51805405 | Msa0605750:intron | 45.0% | |
| TACACGAACATGTTCCCAAG+AGG | + | chr4_2:51805538-51805557 | None:intergenic | 45.0% | |
| TCTTGGGAACATGTTCGTGT+AGG | - | chr4_2:51805537-51805556 | Msa0605750:intron | 45.0% | |
| GGAGACTATTGGGAAGACAT+TGG | - | chr4_2:51806125-51806144 | Msa0605750:CDS | 45.0% | |
| ATGGCTCTTACTGAAGAGGT+AGG | - | chr4_2:51806176-51806195 | Msa0605750:CDS | 45.0% | |
| GTGGATGCAATAATCTCGCA+TGG | - | chr4_2:51806473-51806492 | Msa0605750:intron | 45.0% | |
| CGTTCTCGGCCAAGAAATTA+TGG | + | chr4_2:51806586-51806605 | None:intergenic | 45.0% | |
| !! | CCTTGGTTCTATAGCGTTCT+CGG | + | chr4_2:51806600-51806619 | None:intergenic | 45.0% |
| GAGATCTAGTGCAGCTAATG+CGG | - | chr4_2:51806669-51806688 | Msa0605750:intron | 45.0% | |
| ! | AAGCCTTAGGGTTTTCTCAG+CGG | + | chr4_2:51806710-51806729 | None:intergenic | 45.0% |
| AATTGCTTCTGAGCTAGCAC+AGG | - | chr4_2:51806830-51806849 | Msa0605750:CDS | 45.0% | |
| ATTGCTTCTGAGCTAGCACA+GGG | - | chr4_2:51806831-51806850 | Msa0605750:CDS | 45.0% | |
| CACAGGGAAAGGTTCCTATT+GGG | - | chr4_2:51806847-51806866 | Msa0605750:CDS | 45.0% | |
| GGAAAGGTTCCTATTGGGAT+TGG | - | chr4_2:51806852-51806871 | Msa0605750:CDS | 45.0% | |
| GATGACATCTTTCCCAATCC+TGG | + | chr4_2:51807044-51807063 | None:intergenic | 45.0% | |
| GAAGCAGATAGACCAGAAGA+TGG | - | chr4_2:51807220-51807239 | Msa0605750:intron | 45.0% | |
| GAGAAAGCGACAATAGAGGA+CGG | - | chr4_2:51807277-51807296 | Msa0605750:intron | 45.0% | |
| GGCCTTCTTAACCCTCTCTT+TGG | + | chr4_2:51803774-51803793 | None:intergenic | 50.0% | |
| AGGGTTAAGAAGGCCAAACC+TGG | - | chr4_2:51803779-51803798 | Msa0605750:three_prime_UTR | 50.0% | |
| AGCAGACACAACACCAGGTT+TGG | + | chr4_2:51803795-51803814 | None:intergenic | 50.0% | |
| AGAACAGCAGACACAACACC+AGG | + | chr4_2:51803800-51803819 | None:intergenic | 50.0% | |
| TTGCAGTTGTGATGCTGCTG+CGG | - | chr4_2:51803958-51803977 | Msa0605750:intron | 50.0% | |
| TGCAGCCACATCAGCTATAG+TGG | + | chr4_2:51804061-51804080 | None:intergenic | 50.0% | |
| ! | TGCGACTGCAATTGCTGTTG+CGG | - | chr4_2:51804111-51804130 | Msa0605750:CDS | 50.0% |
| GCTTCCATTGTATTGGGAGG+AGG | - | chr4_2:51804324-51804343 | Msa0605750:CDS | 50.0% | |
| AGGACCTCCTCCCAATACAA+TGG | + | chr4_2:51804331-51804350 | None:intergenic | 50.0% | |
| ATTGTATTGGGAGGAGGTCC+TGG | - | chr4_2:51804330-51804349 | Msa0605750:CDS | 50.0% | |
| ! | AGCAGGTGTAGCAGCTCTTT+TGG | + | chr4_2:51804376-51804395 | None:intergenic | 50.0% |
| GGATTACATGGACCTTGTGC+AGG | - | chr4_2:51805120-51805139 | Msa0605750:intron | 50.0% | |
| ACGTGAACGTTCACCCACAA+TGG | + | chr4_2:51806531-51806550 | None:intergenic | 50.0% | |
| TGTGGGTGAACGTTCACGTT+TGG | - | chr4_2:51806532-51806551 | Msa0605750:CDS | 50.0% | |
| CCGAGAACGCTATAGAACCA+AGG | - | chr4_2:51806597-51806616 | Msa0605750:CDS | 50.0% | |
| TGACCGCTGAGAAAACCCTA+AGG | - | chr4_2:51806704-51806723 | Msa0605750:intron | 50.0% | |
| GCTGAGAAAACCCTAAGGCT+TGG | - | chr4_2:51806709-51806728 | Msa0605750:intron | 50.0% | |
| TTCTGAGCTAGCACAGGGAA+AGG | - | chr4_2:51806836-51806855 | Msa0605750:CDS | 50.0% | |
| GCACAGGGAAAGGTTCCTAT+TGG | - | chr4_2:51806846-51806865 | Msa0605750:CDS | 50.0% | |
| GGACGGCACTGTCATATAAG+TGG | - | chr4_2:51807294-51807313 | Msa0605750:intron | 50.0% | |
| AGCTGATGTGGCTGCAACTG+CGG | - | chr4_2:51804065-51804084 | Msa0605750:intron | 55.0% | |
| ! | TACCTGTCGGTGGGTGCTAT+AGG | - | chr4_2:51804483-51804502 | Msa0605750:intron | 55.0% |
| ACTCAAACGCCAGGAGAAGC+TGG | - | chr4_2:51804977-51804996 | Msa0605750:CDS | 55.0% | |
| CTCAAACGCCAGGAGAAGCT+GGG | - | chr4_2:51804978-51804997 | Msa0605750:CDS | 55.0% | |
| AAGGAACAGCGGATGCTGTG+AGG | - | chr4_2:51805014-51805033 | Msa0605750:CDS | 55.0% | |
| !! | CATGTGCTGCTGTTGGTGAC+AGG | - | chr4_2:51805267-51805286 | Msa0605750:CDS | 55.0% |
| ! | GGATTACGGTGTTGAGCTCC+AGG | - | chr4_2:51806553-51806572 | Msa0605750:CDS | 55.0% |
| TGTACGCGCGCAGAGTAGAA+GGG | - | chr4_2:51807440-51807459 | Msa0605750:CDS | 55.0% | |
| TCATGTTGAGGGGTCCGTCG+TGG | - | chr4_2:51803858-51803877 | Msa0605750:CDS | 60.0% | |
| AGCCTATAGCACCCACCGAC+AGG | + | chr4_2:51804488-51804507 | None:intergenic | 60.0% | |
| TTGGCGGCTACTCAAACGCC+AGG | - | chr4_2:51804968-51804987 | Msa0605750:intron | 60.0% | |
| GTGTACGCGCGCAGAGTAGA+AGG | - | chr4_2:51807439-51807458 | Msa0605750:CDS | 60.0% | |
| TGTGGCTGCAACTGCGGCCG+CGG | - | chr4_2:51804071-51804090 | Msa0605750:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 51803611 | 51807556 | 51803611 | ID=Msa0605750;Name=Msa0605750 |
| chr4_2 | mRNA | 51803611 | 51807556 | 51803611 | ID=Msa0605750-mRNA-1;Parent=Msa0605750;Name=Msa0605750-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.91|0.92|1|1|1|13|244|517 |
| chr4_2 | exon | 51803611 | 51803956 | 51803611 | ID=Msa0605750-mRNA-1:exon:12451;Parent=Msa0605750-mRNA-1 |
| chr4_2 | exon | 51804089 | 51804149 | 51804089 | ID=Msa0605750-mRNA-1:exon:12450;Parent=Msa0605750-mRNA-1 |
| chr4_2 | exon | 51804275 | 51804381 | 51804275 | ID=Msa0605750-mRNA-1:exon:12449;Parent=Msa0605750-mRNA-1 |
| chr4_2 | exon | 51804593 | 51804697 | 51804593 | ID=Msa0605750-mRNA-1:exon:12448;Parent=Msa0605750-mRNA-1 |
| chr4_2 | exon | 51804790 | 51804876 | 51804790 | ID=Msa0605750-mRNA-1:exon:12447;Parent=Msa0605750-mRNA-1 |
| chr4_2 | exon | 51804974 | 51805054 | 51804974 | ID=Msa0605750-mRNA-1:exon:12446;Parent=Msa0605750-mRNA-1 |
| chr4_2 | exon | 51805153 | 51805338 | 51805153 | ID=Msa0605750-mRNA-1:exon:12445;Parent=Msa0605750-mRNA-1 |
| chr4_2 | exon | 51805683 | 51805776 | 51805683 | ID=Msa0605750-mRNA-1:exon:12444;Parent=Msa0605750-mRNA-1 |
| chr4_2 | exon | 51805879 | 51805934 | 51805879 | ID=Msa0605750-mRNA-1:exon:12443;Parent=Msa0605750-mRNA-1 |
| chr4_2 | exon | 51806026 | 51806202 | 51806026 | ID=Msa0605750-mRNA-1:exon:12442;Parent=Msa0605750-mRNA-1 |
| chr4_2 | exon | 51806515 | 51806685 | 51806515 | ID=Msa0605750-mRNA-1:exon:12441;Parent=Msa0605750-mRNA-1 |
| chr4_2 | exon | 51806772 | 51806894 | 51806772 | ID=Msa0605750-mRNA-1:exon:12440;Parent=Msa0605750-mRNA-1 |
| chr4_2 | exon | 51807353 | 51807556 | 51807353 | ID=Msa0605750-mRNA-1:exon:12439;Parent=Msa0605750-mRNA-1 |
| chr4_2 | CDS | 51807353 | 51807556 | 51807353 | ID=Msa0605750-mRNA-1:cds;Parent=Msa0605750-mRNA-1 |
| chr4_2 | CDS | 51806772 | 51806894 | 51806772 | ID=Msa0605750-mRNA-1:cds;Parent=Msa0605750-mRNA-1 |
| chr4_2 | CDS | 51806515 | 51806685 | 51806515 | ID=Msa0605750-mRNA-1:cds;Parent=Msa0605750-mRNA-1 |
| chr4_2 | CDS | 51806026 | 51806202 | 51806026 | ID=Msa0605750-mRNA-1:cds;Parent=Msa0605750-mRNA-1 |
| chr4_2 | CDS | 51805879 | 51805934 | 51805879 | ID=Msa0605750-mRNA-1:cds;Parent=Msa0605750-mRNA-1 |
| chr4_2 | CDS | 51805683 | 51805776 | 51805683 | ID=Msa0605750-mRNA-1:cds;Parent=Msa0605750-mRNA-1 |
| chr4_2 | CDS | 51805153 | 51805338 | 51805153 | ID=Msa0605750-mRNA-1:cds;Parent=Msa0605750-mRNA-1 |
| chr4_2 | CDS | 51804974 | 51805054 | 51804974 | ID=Msa0605750-mRNA-1:cds;Parent=Msa0605750-mRNA-1 |
| chr4_2 | CDS | 51804790 | 51804876 | 51804790 | ID=Msa0605750-mRNA-1:cds;Parent=Msa0605750-mRNA-1 |
| chr4_2 | CDS | 51804593 | 51804697 | 51804593 | ID=Msa0605750-mRNA-1:cds;Parent=Msa0605750-mRNA-1 |
| chr4_2 | CDS | 51804275 | 51804381 | 51804275 | ID=Msa0605750-mRNA-1:cds;Parent=Msa0605750-mRNA-1 |
| chr4_2 | CDS | 51804089 | 51804149 | 51804089 | ID=Msa0605750-mRNA-1:cds;Parent=Msa0605750-mRNA-1 |
| chr4_2 | CDS | 51803855 | 51803956 | 51803855 | ID=Msa0605750-mRNA-1:cds;Parent=Msa0605750-mRNA-1 |
| chr4_2 | three_prime_UTR | 51803611 | 51803854 | 51803611 | ID=Msa0605750-mRNA-1:three_prime_utr;Parent=Msa0605750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
