Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550330 | XP_003606943.1 | 94.600 | 537 | 20 | 1 | 1 | 537 | 1 | 528 | 0.0 | 1048 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550330 | sp|Q00081|GLGL1_SOLTU | 76.360 | 478 | 104 | 1 | 60 | 537 | 2 | 470 | 0.0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550330 | G7JHD0 | 94.600 | 537 | 20 | 1 | 1 | 537 | 1 | 528 | 0.0 | 1048 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140760 | Msa0550330 | 0.846444 | 2.164144e-59 | -8.615850e-47 |
| Msa0196370 | Msa0550330 | 0.829065 | 6.339916e-55 | -8.615850e-47 |
| Msa0238260 | Msa0550330 | 0.868517 | 6.156886e-66 | -8.615850e-47 |
| Msa0238280 | Msa0550330 | 0.821018 | 5.047185e-53 | -8.615850e-47 |
| Msa0385920 | Msa0550330 | 0.848886 | 4.605438e-60 | -8.615850e-47 |
| Msa0479740 | Msa0550330 | 0.874197 | 8.152538e-68 | -8.615850e-47 |
| Msa0275690 | Msa0550330 | 0.854706 | 1.029307e-61 | -8.615850e-47 |
| Msa0316270 | Msa0550330 | 0.853925 | 1.731047e-61 | -8.615850e-47 |
| Msa0316280 | Msa0550330 | 0.882797 | 7.704225e-71 | -8.615850e-47 |
| Msa0523360 | Msa0550330 | 0.850409 | 1.730673e-60 | -8.615850e-47 |
| Msa0550330 | Msa0605750 | 0.889152 | 3.128685e-73 | -8.615850e-47 |
| Msa0550330 | Msa0646780 | 0.988978 | 3.456423e-176 | -8.615850e-47 |
| Msa0550330 | Msa0686360 | 0.910598 | 1.565428e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550330 | MtrunA17_Chr4g0035171 | 94.600 | 537 | 20 | 1 | 1 | 537 | 1 | 528 | 0.0 | 1048 |
| Msa0550330 | MtrunA17_Chr3g0141761 | 67.641 | 513 | 146 | 5 | 29 | 537 | 34 | 530 | 0.0 | 699 |
| Msa0550330 | MtrunA17_Chr4g0074531 | 63.425 | 473 | 160 | 3 | 66 | 537 | 61 | 521 | 0.0 | 647 |
| Msa0550330 | MtrunA17_Chr7g0271011 | 64.592 | 466 | 147 | 3 | 81 | 537 | 80 | 536 | 0.0 | 628 |
| Msa0550330 | MtrunA17_Chr3g0144741 | 73.389 | 357 | 76 | 3 | 1 | 357 | 1 | 338 | 2.43e-180 | 511 |
| Msa0550330 | MtrunA17_Chr5g0447341 | 51.501 | 433 | 193 | 6 | 108 | 537 | 97 | 515 | 3.89e-159 | 463 |
| Msa0550330 | MtrunA17_Chr3g0120471 | 51.963 | 433 | 188 | 7 | 108 | 537 | 96 | 511 | 4.01e-158 | 460 |
| Msa0550330 | MtrunA17_Chr0c30g0494071 | 48.240 | 483 | 127 | 10 | 90 | 537 | 21 | 415 | 1.35e-144 | 422 |
| Msa0550330 | MtrunA17_Chr3g0144731 | 86.624 | 157 | 21 | 0 | 381 | 537 | 5 | 161 | 1.59e-96 | 290 |
| Msa0550330 | MtrunA17_Chr4g0077071 | 41.250 | 80 | 46 | 1 | 370 | 448 | 2 | 81 | 2.50e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550330 | AT4G39210.2 | 69.460 | 537 | 147 | 4 | 2 | 537 | 1 | 521 | 0.0 | 772 |
| Msa0550330 | AT4G39210.1 | 69.460 | 537 | 147 | 4 | 2 | 537 | 1 | 521 | 0.0 | 772 |
| Msa0550330 | AT2G21590.2 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 734 |
| Msa0550330 | AT2G21590.3 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 734 |
| Msa0550330 | AT2G21590.5 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 734 |
| Msa0550330 | AT2G21590.4 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 734 |
| Msa0550330 | AT2G21590.7 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 734 |
| Msa0550330 | AT2G21590.1 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 734 |
| Msa0550330 | AT2G21590.6 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 734 |
| Msa0550330 | AT1G27680.1 | 70.378 | 476 | 128 | 3 | 59 | 533 | 51 | 514 | 0.0 | 707 |
| Msa0550330 | AT5G19220.1 | 60.729 | 494 | 184 | 2 | 44 | 537 | 39 | 522 | 0.0 | 645 |
| Msa0550330 | AT5G48300.1 | 52.425 | 433 | 189 | 6 | 108 | 537 | 102 | 520 | 1.75e-161 | 469 |
| Msa0550330 | AT1G05610.1 | 39.911 | 451 | 237 | 10 | 94 | 537 | 53 | 476 | 5.83e-107 | 328 |
| Msa0550330 | AT1G05610.2 | 39.648 | 454 | 240 | 10 | 94 | 537 | 53 | 482 | 7.53e-107 | 328 |
Find 145 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTGCTCGCACCTATTT+TGG | 0.081433 | 4_1:+45752653 | Msa0550330:CDS |
| CAAATTTGCTATATGGTTAT+TGG | 0.138588 | 4_1:-45751688 | None:intergenic |
| ATTCTCAATGTTAGTGTTCT+TGG | 0.168119 | 4_1:-45753025 | None:intergenic |
| GTGTCAACTTCAGACCTTTC+AGG | 0.205906 | 4_1:+45752310 | Msa0550330:intron |
| ACACATATATATAAACAAAA+AGG | 0.207039 | 4_1:-45755421 | None:intergenic |
| GTTGATGCCATTTCCAAAAT+AGG | 0.213388 | 4_1:-45752666 | None:intergenic |
| GAGAGTGAGATTTAGATTAT+TGG | 0.234363 | 4_1:-45751328 | None:intergenic |
| TCTGTTCTCAAAGTAATCTT+TGG | 0.235135 | 4_1:-45755354 | None:intergenic |
| CTTTCCTCAAATTTGCTATA+TGG | 0.245307 | 4_1:-45751695 | None:intergenic |
| GTCACCATATATTGCATCTA+TGG | 0.271084 | 4_1:+45753847 | Msa0550330:CDS |
| GGCCTTCTTAACCCTCTCTT+TGG | 0.286759 | 4_1:-45751820 | None:intergenic |
| AAATGTTGCTTCCATTGTAT+TGG | 0.295734 | 4_1:+45752367 | Msa0550330:CDS |
| TGCTAGCTCAGAAGCAATTT+CGG | 0.314259 | 4_1:-45754837 | None:intergenic |
| AGCAGGTGTAGCAGCTCTTT+TGG | 0.314559 | 4_1:-45752423 | None:intergenic |
| GATGGAATTCCAAATGGAAT+TGG | 0.315379 | 4_1:-45751378 | None:intergenic |
| AATGTTGCTTCCATTGTATT+GGG | 0.317534 | 4_1:+45752368 | Msa0550330:CDS |
| TTTGATAGACAAGTAATTGA+TGG | 0.319357 | 4_1:-45751396 | None:intergenic |
| GAACGTTCACGTTTGGATTA+CGG | 0.324212 | 4_1:+45754519 | Msa0550330:CDS |
| GTGTACGCGCGCAGAGTAGA+AGG | 0.324381 | 4_1:+45755452 | Msa0550330:three_prime_UTR |
| TTCAGTCGTGCATCGGATTA+CGG | 0.329466 | 4_1:+45753368 | Msa0550330:intron |
| TGTCAAACCAAGATGCATTA+AGG | 0.343976 | 4_1:+45753825 | Msa0550330:CDS |
| CTCAGAAGCAATTTCGGATT+CGG | 0.345496 | 4_1:-45754831 | None:intergenic |
| TTTGTTGGTGGTAAGAATCT+TGG | 0.351797 | 4_1:-45754319 | None:intergenic |
| CTGTTACTTCCAATCCCAAT+AGG | 0.370914 | 4_1:-45754872 | None:intergenic |
| GCACAGGGAAAGGTTCCTAT+TGG | 0.371034 | 4_1:+45754857 | Msa0550330:CDS |
| GAATCTTGGAGATGTGAAAA+TGG | 0.376696 | 4_1:-45754305 | None:intergenic |
| CTGCATTTATCAATCTTTGT+TGG | 0.377402 | 4_1:-45754334 | None:intergenic |
| TACCTGTTGGTGGGTGCTAT+AGG | 0.383651 | 4_1:+45752540 | Msa0550330:CDS |
| TCATATATCCCAATTCCATT+TGG | 0.389918 | 4_1:+45751369 | Msa0550330:five_prime_UTR |
| TGTGGGTGAACGTTCACGTT+TGG | 0.391042 | 4_1:+45754512 | Msa0550330:CDS |
| TTTGGAAATGGCATCAACTT+TGG | 0.391193 | 4_1:+45752671 | Msa0550330:CDS |
| ACTCCCATAGATGCAATATA+TGG | 0.392783 | 4_1:-45753851 | None:intergenic |
| GATTTCAGATCCAAAGTCAT+TGG | 0.397964 | 4_1:-45753930 | None:intergenic |
| CGGATGTAAAATCCATCTTC+TGG | 0.403798 | 4_1:-45755243 | None:intergenic |
| AGCAGACACAACACCAGGTT+TGG | 0.410213 | 4_1:-45751841 | None:intergenic |
| CATTGAGAATGTAATAATCT+TGG | 0.411542 | 4_1:+45753038 | Msa0550330:CDS |
| CATCCCTCTCGTGAAGGCTC+TGG | 0.412851 | 4_1:+45751212 | Msa0550330:five_prime_UTR |
| ACTCAAACGCCAGGAGAAGC+TGG | 0.413697 | 4_1:+45752940 | Msa0550330:CDS |
| ATTGTATTGGGAGGAGGTCC+TGG | 0.415190 | 4_1:+45752380 | Msa0550330:CDS |
| CACAGGGAAAGGTTCCTATT+GGG | 0.422057 | 4_1:+45754858 | Msa0550330:CDS |
| GGATTACGGTGTTGAGCTCC+AGG | 0.426885 | 4_1:+45754533 | Msa0550330:CDS |
| AATCATTCCTGCATCTGTTA+AGG | 0.427773 | 4_1:+45753949 | Msa0550330:CDS |
| GCAATTTACATGGGTATTTG+AGG | 0.429868 | 4_1:+45752999 | Msa0550330:CDS |
| AGCCTATAGCACCCACCAAC+AGG | 0.430792 | 4_1:-45752542 | None:intergenic |
| AAATGATGCCGTTGAGACTA+AGG | 0.434380 | 4_1:+45751875 | Msa0550330:CDS |
| GAGATTTAGATTATTGGAAA+TGG | 0.434389 | 4_1:-45751322 | None:intergenic |
| ATGGAATTCCAAATGGAATT+GGG | 0.435541 | 4_1:-45751377 | None:intergenic |
| AAGCAATTTCGGATTCGGTT+TGG | 0.438840 | 4_1:-45754826 | None:intergenic |
| TCCTTGGATGATTAATCAGT+TGG | 0.439153 | 4_1:+45751782 | Msa0550330:CDS |
| ATGGTGACCTTAATGCATCT+TGG | 0.439664 | 4_1:-45753832 | None:intergenic |
| CACATAAATAAAATGATTGA+AGG | 0.440390 | 4_1:+45755537 | Msa0550330:three_prime_UTR |
| TTTACAGGACACTGTAATGA+TGG | 0.445727 | 4_1:+45754790 | Msa0550330:intron |
| GGAAAGGTTCCTATTGGGAT+TGG | 0.456229 | 4_1:+45754863 | Msa0550330:CDS |
| ATTGACAAGAATGCCAGGAT+TGG | 0.456643 | 4_1:+45755039 | Msa0550330:CDS |
| CTGTTGATACAGTTGCTCAT+TGG | 0.456942 | 4_1:-45752575 | None:intergenic |
| GCTTCCATTGTATTGGGAGG+AGG | 0.457513 | 4_1:+45752374 | Msa0550330:CDS |
| AGATCCAAAGTCATTGGATG+TGG | 0.463757 | 4_1:-45753924 | None:intergenic |
| TTTGGTTTCTCTATTGTACA+TGG | 0.464532 | 4_1:-45755395 | None:intergenic |
| CAACAAAGATTGATAAATGC+AGG | 0.467155 | 4_1:+45754335 | Msa0550330:CDS |
| TTGCATTCCTTAACAGATGC+AGG | 0.468552 | 4_1:-45753956 | None:intergenic |
| TTGACAAGAATGCCAGGATT+GGG | 0.469631 | 4_1:+45755040 | Msa0550330:CDS |
| GATTTAAGATCAGCACCCTT+AGG | 0.470111 | 4_1:-45753440 | None:intergenic |
| TTTAATTGCGAGTGTAAGAA+AGG | 0.472458 | 4_1:-45751440 | None:intergenic |
| TTGGAAGTAACAGCAAAATC+AGG | 0.473432 | 4_1:+45754882 | Msa0550330:CDS |
| ATCAGGAATCACAATTGTAA+TGG | 0.475871 | 4_1:+45755266 | Msa0550330:CDS |
| CATTTATCAATCTTTGTTGG+TGG | 0.476162 | 4_1:-45754331 | None:intergenic |
| GTAATTGATGGAATTCCAAA+TGG | 0.479083 | 4_1:-45751384 | None:intergenic |
| TCTTGGTGAGAGAATCAAAC+GGG | 0.481456 | 4_1:+45751746 | Msa0550330:CDS |
| GGGTGCTGATCTTAAATCAA+TGG | 0.482192 | 4_1:+45753445 | Msa0550330:CDS |
| AGAGCCTTCACGAGAGGGAT+GGG | 0.485393 | 4_1:-45751210 | None:intergenic |
| TGTCATATAAGTGGCTAGCT+TGG | 0.485547 | 4_1:+45755314 | Msa0550330:exon |
| AACCAAAGAGAGGGTTAAGA+AGG | 0.486759 | 4_1:+45751818 | Msa0550330:CDS |
| GGGGTGTAAATTATAGTCCT+TGG | 0.487576 | 4_1:+45751766 | Msa0550330:CDS |
| GTTGTACACTACATTCTCTA+AGG | 0.489282 | 4_1:-45754482 | None:intergenic |
| TATCCCACATCCAATGACTT+TGG | 0.491448 | 4_1:+45753920 | Msa0550330:CDS |
| ATGCTGTGAGGCAATTTACA+TGG | 0.492795 | 4_1:+45752989 | Msa0550330:CDS |
| ATAACCATATAGCAAATTTG+AGG | 0.496126 | 4_1:+45751691 | Msa0550330:CDS |
| TGGAAATGGTAACTGAAGGC+TGG | 0.504066 | 4_1:-45751308 | None:intergenic |
| GATGTGAAAATGGGTGTCTT+GGG | 0.504166 | 4_1:-45754295 | None:intergenic |
| AGATGTGAAAATGGGTGTCT+TGG | 0.510373 | 4_1:-45754296 | None:intergenic |
| CAGAGCCTTCACGAGAGGGA+TGG | 0.511936 | 4_1:-45751211 | None:intergenic |
| CATGTGCTGCTGTTGGTGAC+AGG | 0.513782 | 4_1:+45753230 | Msa0550330:CDS |
| GATGACATCTTTCCCAATCC+TGG | 0.514030 | 4_1:-45755052 | None:intergenic |
| CCTTGGATGATTAATCAGTT+GGG | 0.517935 | 4_1:+45751783 | Msa0550330:CDS |
| AATCTTGGAGATGTGAAAAT+GGG | 0.520261 | 4_1:-45754304 | None:intergenic |
| AAGATTACTTTGAGAACAGA+AGG | 0.526225 | 4_1:+45755357 | Msa0550330:three_prime_UTR |
| TTGGCGGCTACTCAAACGCC+AGG | 0.530303 | 4_1:+45752931 | Msa0550330:CDS |
| GAAGCAGATAGACCAGAAGA+TGG | 0.532366 | 4_1:+45755231 | Msa0550330:CDS |
| AATTGCTTCTGAGCTAGCAC+AGG | 0.540855 | 4_1:+45754841 | Msa0550330:CDS |
| TCACCATATATTGCATCTAT+GGG | 0.541411 | 4_1:+45753848 | Msa0550330:CDS |
| AATGGCATCAACTTTGGAGA+TGG | 0.542455 | 4_1:+45752677 | Msa0550330:CDS |
| GGACTACATGGACCTTGTGC+AGG | 0.543873 | 4_1:+45753083 | Msa0550330:CDS |
| TACTCAAGCTTCTAAAATGG+AGG | 0.545196 | 4_1:+45753897 | Msa0550330:CDS |
| GGATCATAAAATTTGAACAA+TGG | 0.546619 | 4_1:-45754274 | None:intergenic |
| TCTATACAGAATGGACTACA+TGG | 0.550347 | 4_1:+45753071 | Msa0550330:CDS |
| GGAGACTATTGGGAAGACAT+TGG | 0.550910 | 4_1:+45754105 | Msa0550330:CDS |
| GAGTTGAATGTTGTGCTACT+AGG | 0.551787 | 4_1:-45751255 | None:intergenic |
| CTCAAACGCCAGGAGAAGCT+GGG | 0.551829 | 4_1:+45752941 | Msa0550330:CDS |
| GTATAATTGACAAGAATGCC+AGG | 0.558591 | 4_1:+45755034 | Msa0550330:CDS |
| TTCTGAGCTAGCACAGGGAA+AGG | 0.561514 | 4_1:+45754847 | Msa0550330:CDS |
| CATAAATGATGGAACCTGAA+AGG | 0.567480 | 4_1:-45752324 | None:intergenic |
| AATGGAGAAAGCGACAATAG+AGG | 0.575600 | 4_1:+45755284 | Msa0550330:CDS |
| GGACAGCACTGTCATATAAG+TGG | 0.576428 | 4_1:+45755305 | Msa0550330:exon |
| AGGGTTAAGAAGGCCAAACC+TGG | 0.576523 | 4_1:+45751828 | Msa0550330:CDS |
| TTACAGGACACTGTAATGAT+GGG | 0.576561 | 4_1:+45754791 | Msa0550330:intron |
| CCCAACTGATTAATCATCCA+AGG | 0.580151 | 4_1:-45751783 | None:intergenic |
| TTACAATTGTGATTCCTGAT+CGG | 0.588358 | 4_1:-45755263 | None:intergenic |
| GAGCCTTCACGAGAGGGATG+GGG | 0.589768 | 4_1:-45751209 | None:intergenic |
| TTTCCCCATCCCTCTCGTGA+AGG | 0.589980 | 4_1:+45751206 | Msa0550330:five_prime_UTR |
| GAGAATGTAATAATCTTGGC+TGG | 0.593829 | 4_1:+45753042 | Msa0550330:CDS |
| AGTGTACAACACTCCATTGT+GGG | 0.594262 | 4_1:+45754495 | Msa0550330:CDS |
| CAACTTTGGAGATGGATATG+TGG | 0.599466 | 4_1:+45752685 | Msa0550330:CDS |
| ACAGTATCATGTGCTGCTGT+TGG | 0.599712 | 4_1:+45753223 | Msa0550330:CDS |
| TAATATGGCTCTTACTGAAG+AGG | 0.599834 | 4_1:+45754152 | Msa0550330:CDS |
| ACGTGAACGTTCACCCACAA+TGG | 0.600506 | 4_1:-45754508 | None:intergenic |
| AACAAAGATTGATAAATGCA+GGG | 0.604087 | 4_1:+45754336 | Msa0550330:CDS |
| GAGCCAGAGCCTTCACGAGA+GGG | 0.604639 | 4_1:-45751215 | None:intergenic |
| TGTACGCGCGCAGAGTAGAA+GGG | 0.606979 | 4_1:+45755453 | Msa0550330:three_prime_UTR |
| TCAGCTTACCTTAGTCTCAA+CGG | 0.607553 | 4_1:-45751883 | None:intergenic |
| GTTGCTTCCATTGTATTGGG+AGG | 0.607715 | 4_1:+45752371 | Msa0550330:CDS |
| TAAGTTTGAGAACCAAAGAG+AGG | 0.613319 | 4_1:+45751808 | Msa0550330:CDS |
| TGGTGATCATCTATACAGAA+TGG | 0.614075 | 4_1:+45753062 | Msa0550330:CDS |
| TTCTTGGTGAGAGAATCAAA+CGG | 0.617258 | 4_1:+45751745 | Msa0550330:CDS |
| AGGACCTCCTCCCAATACAA+TGG | 0.628390 | 4_1:-45752378 | None:intergenic |
| GATCCAAAGTCATTGGATGT+GGG | 0.628997 | 4_1:-45753923 | None:intergenic |
| AGAACAGCAGACACAACACC+AGG | 0.631071 | 4_1:-45751846 | None:intergenic |
| ACAAGAAGACACCATTGTGA+TGG | 0.631724 | 4_1:-45751652 | None:intergenic |
| TGCTGTGAGGCAATTTACAT+GGG | 0.632280 | 4_1:+45752990 | Msa0550330:CDS |
| AAGTTTGAGAACCAAAGAGA+GGG | 0.633814 | 4_1:+45751809 | Msa0550330:CDS |
| TTGAATGTTGTGCTACTAGG+TGG | 0.639846 | 4_1:-45751252 | None:intergenic |
| TTATTGGAAATGGTAACTGA+AGG | 0.644751 | 4_1:-45751312 | None:intergenic |
| CTTTGGAGATGGATATGTGG+AGG | 0.648283 | 4_1:+45752688 | Msa0550330:CDS |
| TGAGCCAGAGCCTTCACGAG+AGG | 0.648560 | 4_1:-45751216 | None:intergenic |
| ATCGGATTACGGATTAGTCA+AGG | 0.648959 | 4_1:+45753379 | Msa0550330:CDS |
| AATAGGTGCGAGCAATGTGA+CGG | 0.649705 | 4_1:-45752649 | None:intergenic |
| TTAGTCAAGGTAGATAGCAG+AGG | 0.651808 | 4_1:+45753392 | Msa0550330:CDS |
| GTGGATGCAATAATCTCGCA+TGG | 0.664341 | 4_1:+45754453 | Msa0550330:CDS |
| TAGTGTACAACACTCCATTG+TGG | 0.667376 | 4_1:+45754494 | Msa0550330:CDS |
| ATTGCTTCTGAGCTAGCACA+GGG | 0.674782 | 4_1:+45754842 | Msa0550330:CDS |
| AAATTGGTTTCAAGGAACAG+CGG | 0.676116 | 4_1:+45752966 | Msa0550330:CDS |
| CTTGGTGAGAGAATCAAACG+GGG | 0.681586 | 4_1:+45751747 | Msa0550330:CDS |
| AAGGAACAGCGGATGCTGTG+AGG | 0.682609 | 4_1:+45752977 | Msa0550330:CDS |
| AATCATTGAATACCTGCACA+AGG | 0.693249 | 4_1:-45753095 | None:intergenic |
| TTGATACATCACCATCACAA+TGG | 0.696769 | 4_1:+45751641 | Msa0550330:exon |
| ATGAGCAACTGTATCAACAG+TGG | 0.701758 | 4_1:+45752578 | Msa0550330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAGGAAAAATTTAA+AGG | - | chr4_1:45753273-45753292 | None:intergenic | 10.0% |
| !! | CAAAAAAACATATATAAAAA+AGG | - | chr4_1:45753286-45753305 | None:intergenic | 10.0% |
| !! | AAATATATTATGATCAAATT+AGG | - | chr4_1:45753733-45753752 | None:intergenic | 10.0% |
| !!! | AAAATTTTGTTTTAAATGTT+AGG | - | chr4_1:45754773-45754792 | None:intergenic | 10.0% |
| !!! | AATATTTTTCATCATGATAA+TGG | + | chr4_1:45751720-45751739 | Msa0550330:CDS | 15.0% |
| !!! | AAAAAATATTTTAACGCTTA+TGG | + | chr4_1:45752191-45752210 | Msa0550330:intron | 15.0% |
| !!! | CATAATATATTTATCTTTTC+TGG | + | chr4_1:45753741-45753760 | Msa0550330:intron | 15.0% |
| !!! | CATTTAAAACAAAATTTTAC+AGG | + | chr4_1:45754775-45754794 | Msa0550330:intron | 15.0% |
| !! | AAAAGAAATATAAGGTAAAA+GGG | - | chr4_1:45755106-45755125 | None:intergenic | 15.0% |
| !! | TAAAAGAAATATAAGGTAAA+AGG | - | chr4_1:45755107-45755126 | None:intergenic | 15.0% |
| !! | TCAAATGTAAAAGAAATATA+AGG | - | chr4_1:45755114-45755133 | None:intergenic | 15.0% |
| !! | ACATATATATAAACAAAAAG+GGG | - | chr4_1:45755422-45755441 | None:intergenic | 15.0% |
| !! | CACATATATATAAACAAAAA+GGG | - | chr4_1:45755423-45755442 | None:intergenic | 15.0% |
| !! | ACACATATATATAAACAAAA+AGG | - | chr4_1:45755424-45755443 | None:intergenic | 15.0% |
| !! | AATGTTAATGAAGTAATGAA+TGG | - | chr4_1:45751491-45751510 | None:intergenic | 20.0% |
| !!! | TATAAAGGATTTTGAAGTTT+CGG | - | chr4_1:45752030-45752049 | None:intergenic | 20.0% |
| !! | AAATTTAGCTACATAATATC+AGG | - | chr4_1:45752247-45752266 | None:intergenic | 20.0% |
| !! | TTTCATTATGTAATGTTACA+TGG | + | chr4_1:45752497-45752516 | Msa0550330:intron | 20.0% |
| !! | TTGAACTTTCATAAATGTAT+AGG | - | chr4_1:45753476-45753495 | None:intergenic | 20.0% |
| !! | TTTAACGAAATGTATTTGAA+AGG | + | chr4_1:45753596-45753615 | Msa0550330:intron | 20.0% |
| !! | TTAACGAAATGTATTTGAAA+GGG | + | chr4_1:45753597-45753616 | Msa0550330:intron | 20.0% |
| !!! | TTAAGTTTTTTTTTGGTAAC+AGG | - | chr4_1:45753657-45753676 | None:intergenic | 20.0% |
| !! | TTACCAAAAAAAAACTTAAG+AGG | + | chr4_1:45753658-45753677 | Msa0550330:intron | 20.0% |
| !! | TACCAAAAAAAAACTTAAGA+GGG | + | chr4_1:45753659-45753678 | Msa0550330:intron | 20.0% |
| !! | AAAAAAAATGCCTGAAAAAA+AGG | - | chr4_1:45754084-45754103 | None:intergenic | 20.0% |
| !!! | TTTTTTCAGGCATTTTTTTT+CGG | + | chr4_1:45754084-45754103 | Msa0550330:intron | 20.0% |
| !!! | AATAATGTTAGTTTCATGAT+AGG | - | chr4_1:45754233-45754252 | None:intergenic | 20.0% |
| !! | AAAGAAATATAAGGTAAAAG+GGG | - | chr4_1:45755105-45755124 | None:intergenic | 20.0% |
| !! | CATATATATAAACAAAAAGG+GGG | - | chr4_1:45755421-45755440 | None:intergenic | 20.0% |
| !! | CACATAAATAAAATGATTGA+AGG | + | chr4_1:45755537-45755556 | Msa0550330:three_prime_UTR | 20.0% |
| ! | GAGATTTAGATTATTGGAAA+TGG | - | chr4_1:45751325-45751344 | None:intergenic | 25.0% |
| ! | TTTGATAGACAAGTAATTGA+TGG | - | chr4_1:45751399-45751418 | None:intergenic | 25.0% |
| !!! | CAAATTTGCTATATGGTTAT+TGG | - | chr4_1:45751691-45751710 | None:intergenic | 25.0% |
| ! | ATAACCATATAGCAAATTTG+AGG | + | chr4_1:45751691-45751710 | Msa0550330:CDS | 25.0% |
| !! | TTTTTCCGTAATACAAAAGT+TGG | - | chr4_1:45751966-45751985 | None:intergenic | 25.0% |
| ! | TTTGTATTACGGAAAAATCT+TGG | + | chr4_1:45751969-45751988 | Msa0550330:intron | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+CGG | + | chr4_1:45752033-45752052 | Msa0550330:intron | 25.0% |
| ! | TGATTCTTATGTTCTTATTG+TGG | + | chr4_1:45752288-45752307 | Msa0550330:intron | 25.0% |
| !! | GCTTTTATTCTCATAAATGA+TGG | - | chr4_1:45752338-45752357 | None:intergenic | 25.0% |
| !! | TGGTATTGTTTACATTTTTC+AGG | + | chr4_1:45752517-45752536 | Msa0550330:intron | 25.0% |
| ! | TATAAAGTAGCTTTCACATT+AGG | - | chr4_1:45752809-45752828 | None:intergenic | 25.0% |
| !! | AAATCAAACACAATAGGTTT+TGG | + | chr4_1:45752912-45752931 | Msa0550330:intron | 25.0% |
| ! | CATTGAGAATGTAATAATCT+TGG | + | chr4_1:45753038-45753057 | Msa0550330:CDS | 25.0% |
| ! | AGAAAACACTGAAAATGAAA+TGG | - | chr4_1:45753152-45753171 | None:intergenic | 25.0% |
| ! | ATCTTCATTACGTGAAAAAA+CGG | - | chr4_1:45753559-45753578 | None:intergenic | 25.0% |
| ! | AAATGTATTTGAAAGGGTAA+CGG | + | chr4_1:45753603-45753622 | Msa0550330:intron | 25.0% |
| !!! | AACCCTCTTAAGTTTTTTTT+TGG | - | chr4_1:45753664-45753683 | None:intergenic | 25.0% |
| ! | AAAACTTAAGAGGGTTATTA+TGG | + | chr4_1:45753668-45753687 | Msa0550330:intron | 25.0% |
| ! | ATTAGGCAAAATACATTATG+CGG | - | chr4_1:45753716-45753735 | None:intergenic | 25.0% |
| !!! | TTTTACTCAAGCTTCTAAAA+TGG | + | chr4_1:45753894-45753913 | Msa0550330:CDS | 25.0% |
| ! | AAACAGTCTTAACACTTTAA+AGG | - | chr4_1:45754010-45754029 | None:intergenic | 25.0% |
| !! | TTTTCATAATTACTCCTTTG+TGG | + | chr4_1:45754027-45754046 | Msa0550330:intron | 25.0% |
| !!! | ATTTTTTTTCGGAGACTATT+GGG | + | chr4_1:45754095-45754114 | Msa0550330:CDS | 25.0% |
| !! | ATCATTTTACGATGCTAATA+TGG | + | chr4_1:45754137-45754156 | Msa0550330:CDS | 25.0% |
| ! | GGATCATAAAATTTGAACAA+TGG | - | chr4_1:45754277-45754296 | None:intergenic | 25.0% |
| ! | AACAAAGATTGATAAATGCA+GGG | + | chr4_1:45754336-45754355 | Msa0550330:CDS | 25.0% |
| ! | ATGAATGTTCAATATTCTAC+AGG | - | chr4_1:45754977-45754996 | None:intergenic | 25.0% |
| !!! | ATTCAAATGCTTTGTTTGTA+GGG | + | chr4_1:45755201-45755220 | Msa0550330:intron | 25.0% |
| !!! | GTTCTATTTTTACATGTAGT+GGG | - | chr4_1:45755484-45755503 | None:intergenic | 25.0% |
| TTATTGGAAATGGTAACTGA+AGG | - | chr4_1:45751315-45751334 | None:intergenic | 30.0% | |
| GAGAGTGAGATTTAGATTAT+TGG | - | chr4_1:45751331-45751350 | None:intergenic | 30.0% | |
| TCATATATCCCAATTCCATT+TGG | + | chr4_1:45751369-45751388 | Msa0550330:five_prime_UTR | 30.0% | |
| ATGGAATTCCAAATGGAATT+GGG | - | chr4_1:45751380-45751399 | None:intergenic | 30.0% | |
| GTAATTGATGGAATTCCAAA+TGG | - | chr4_1:45751387-45751406 | None:intergenic | 30.0% | |
| TTTAATTGCGAGTGTAAGAA+AGG | - | chr4_1:45751443-45751462 | None:intergenic | 30.0% | |
| !! | CTTTCCTCAAATTTGCTATA+TGG | - | chr4_1:45751698-45751717 | None:intergenic | 30.0% |
| !!! | CATCATGATAATGGTTTTCT+TGG | + | chr4_1:45751729-45751748 | Msa0550330:CDS | 30.0% |
| ATCTTAATTCAAAACCACGA+CGG | - | chr4_1:45751924-45751943 | None:intergenic | 30.0% | |
| AAATTATGGCCGCAATATAA+AGG | - | chr4_1:45752045-45752064 | None:intergenic | 30.0% | |
| ! | TTATATTGCGGCCATAATTT+TGG | + | chr4_1:45752045-45752064 | Msa0550330:intron | 30.0% |
| TCAGCTATAGTGGTAAAAAA+TGG | - | chr4_1:45752101-45752120 | None:intergenic | 30.0% | |
| AATATCAGGAACAAAGTCTT+CGG | - | chr4_1:45752233-45752252 | None:intergenic | 30.0% | |
| !!! | CAATGGAAGCAACATTTTTT+GGG | - | chr4_1:45752364-45752383 | None:intergenic | 30.0% |
| !!! | ACAATGGAAGCAACATTTTT+TGG | - | chr4_1:45752365-45752384 | None:intergenic | 30.0% |
| ! | AAATGTTGCTTCCATTGTAT+TGG | + | chr4_1:45752367-45752386 | Msa0550330:CDS | 30.0% |
| ! | AATGTTGCTTCCATTGTATT+GGG | + | chr4_1:45752368-45752387 | Msa0550330:CDS | 30.0% |
| TTGATTTCGTTTCAAAACGT+TGG | - | chr4_1:45752847-45752866 | None:intergenic | 30.0% | |
| CGAAATCAATAATGTCATGA+TGG | + | chr4_1:45752858-45752877 | Msa0550330:intron | 30.0% | |
| ! | ACCTATTGTGTTTGATTTCA+CGG | - | chr4_1:45752910-45752929 | None:intergenic | 30.0% |
| ATTCTCAATGTTAGTGTTCT+TGG | - | chr4_1:45753028-45753047 | None:intergenic | 30.0% | |
| ! | CAATTTTCGGAAAAACCTAA+GGG | + | chr4_1:45753425-45753444 | Msa0550330:CDS | 30.0% |
| TCACCATATATTGCATCTAT+GGG | + | chr4_1:45753848-45753867 | Msa0550330:CDS | 30.0% | |
| ! | ATAGTGGAATTTCTCTTACT+TGG | - | chr4_1:45753985-45754004 | None:intergenic | 30.0% |
| ! | TAACACTTTAAAGGAGATAG+TGG | - | chr4_1:45754001-45754020 | None:intergenic | 30.0% |
| !!! | GTTTGTTTTGCCTTTTTTTC+AGG | + | chr4_1:45754071-45754090 | Msa0550330:intron | 30.0% |
| !!! | CATTTTTTTTCGGAGACTAT+TGG | + | chr4_1:45754094-45754113 | Msa0550330:CDS | 30.0% |
| ! | TGTTAGTTTCATGATAGGAA+GGG | - | chr4_1:45754228-45754247 | None:intergenic | 30.0% |
| ! | ATGTTAGTTTCATGATAGGA+AGG | - | chr4_1:45754229-45754248 | None:intergenic | 30.0% |
| AATCTTGGAGATGTGAAAAT+GGG | - | chr4_1:45754307-45754326 | None:intergenic | 30.0% | |
| CATTTATCAATCTTTGTTGG+TGG | - | chr4_1:45754334-45754353 | None:intergenic | 30.0% | |
| CTGCATTTATCAATCTTTGT+TGG | - | chr4_1:45754337-45754356 | None:intergenic | 30.0% | |
| CAACAAAGATTGATAAATGC+AGG | + | chr4_1:45754335-45754354 | Msa0550330:CDS | 30.0% | |
| AGAAATTATGGTAGTTTACC+TGG | - | chr4_1:45754554-45754573 | None:intergenic | 30.0% | |
| GGTAAACTACCATAATTTCT+TGG | + | chr4_1:45754554-45754573 | Msa0550330:intron | 30.0% | |
| GCAATTAATGATTGACATTG+TGG | + | chr4_1:45754620-45754639 | Msa0550330:intron | 30.0% | |
| GTTCAATATTCTACAGGTTA+TGG | - | chr4_1:45754971-45754990 | None:intergenic | 30.0% | |
| !! | TTACTTGTTGTCTTTGTTGA+AGG | + | chr4_1:45755007-45755026 | Msa0550330:intron | 30.0% |
| ! | TTTGAGTCCATTTTGTTAGT+TGG | + | chr4_1:45755129-45755148 | Msa0550330:intron | 30.0% |
| AAAACCACCAACTAACAAAA+TGG | - | chr4_1:45755139-45755158 | None:intergenic | 30.0% | |
| ! | CTACAAACAAAGCATTTGAA+TGG | - | chr4_1:45755202-45755221 | None:intergenic | 30.0% |
| !! | CATTCAAATGCTTTGTTTGT+AGG | + | chr4_1:45755200-45755219 | Msa0550330:intron | 30.0% |
| TTACAATTGTGATTCCTGAT+CGG | - | chr4_1:45755266-45755285 | None:intergenic | 30.0% | |
| ATCAGGAATCACAATTGTAA+TGG | + | chr4_1:45755266-45755285 | Msa0550330:CDS | 30.0% | |
| TCTGTTCTCAAAGTAATCTT+TGG | - | chr4_1:45755357-45755376 | None:intergenic | 30.0% | |
| ! | AAGATTACTTTGAGAACAGA+AGG | + | chr4_1:45755357-45755376 | Msa0550330:three_prime_UTR | 30.0% |
| ! | TTTGGTTTCTCTATTGTACA+TGG | - | chr4_1:45755398-45755417 | None:intergenic | 30.0% |
| ATATAAACAAAAAGGGGGTT+TGG | - | chr4_1:45755416-45755435 | None:intergenic | 30.0% | |
| !! | TATTTTTACATGTAGTGGGA+GGG | - | chr4_1:45755480-45755499 | None:intergenic | 30.0% |
| !!! | CGTTCTATTTTTACATGTAG+TGG | - | chr4_1:45755485-45755504 | None:intergenic | 30.0% |
| GATGGAATTCCAAATGGAAT+TGG | - | chr4_1:45751381-45751400 | None:intergenic | 35.0% | |
| TTGATACATCACCATCACAA+TGG | + | chr4_1:45751641-45751660 | Msa0550330:exon | 35.0% | |
| TTCTTGGTGAGAGAATCAAA+CGG | + | chr4_1:45751745-45751764 | Msa0550330:CDS | 35.0% | |
| TCCTTGGATGATTAATCAGT+TGG | + | chr4_1:45751782-45751801 | Msa0550330:CDS | 35.0% | |
| CCTTGGATGATTAATCAGTT+GGG | + | chr4_1:45751783-45751802 | Msa0550330:CDS | 35.0% | |
| TAAGTTTGAGAACCAAAGAG+AGG | + | chr4_1:45751808-45751827 | Msa0550330:CDS | 35.0% | |
| AAGTTTGAGAACCAAAGAGA+GGG | + | chr4_1:45751809-45751828 | Msa0550330:CDS | 35.0% | |
| ! | CACTGCCAACTTTTGTATTA+CGG | + | chr4_1:45751958-45751977 | Msa0550330:intron | 35.0% |
| ! | GACCACAGTTTAAAACCAAT+GGG | + | chr4_1:45752073-45752092 | Msa0550330:intron | 35.0% |
| !!! | ATCCCATTGGTTTTAAACTG+TGG | - | chr4_1:45752078-45752097 | None:intergenic | 35.0% |
| TGGTAAAAAATGGATCCCAT+TGG | - | chr4_1:45752091-45752110 | None:intergenic | 35.0% | |
| ! | TTTTACCACTATAGCTGATG+TGG | + | chr4_1:45752103-45752122 | Msa0550330:intron | 35.0% |
| ! | ACATAAAAGATTTTGCACCG+CGG | - | chr4_1:45752141-45752160 | None:intergenic | 35.0% |
| ATATCAGGAACAAAGTCTTC+GGG | - | chr4_1:45752232-45752251 | None:intergenic | 35.0% | |
| ! | CATAAATGATGGAACCTGAA+AGG | - | chr4_1:45752327-45752346 | None:intergenic | 35.0% |
| ! | CTCTTTTGGTAAGAGGAAAA+AGG | - | chr4_1:45752412-45752431 | None:intergenic | 35.0% |
| CTGTGAGTAAATCATTGTCT+TGG | + | chr4_1:45752444-45752463 | Msa0550330:intron | 35.0% | |
| ATTGTCTTGGTTGACTAAAC+AGG | + | chr4_1:45752457-45752476 | Msa0550330:intron | 35.0% | |
| !!! | TACATTTTTCAGGTACCTGT+TGG | + | chr4_1:45752527-45752546 | Msa0550330:intron | 35.0% |
| ! | GTTGATGCCATTTCCAAAAT+AGG | - | chr4_1:45752669-45752688 | None:intergenic | 35.0% |
| TTTGGAAATGGCATCAACTT+TGG | + | chr4_1:45752671-45752690 | Msa0550330:CDS | 35.0% | |
| ! | ATATGTGGAGGTATGTATCA+AGG | + | chr4_1:45752700-45752719 | Msa0550330:intron | 35.0% |
| ACCGTGAAATCAAACACAAT+AGG | + | chr4_1:45752906-45752925 | Msa0550330:intron | 35.0% | |
| !! | TCAAACACAATAGGTTTTGG+CGG | + | chr4_1:45752915-45752934 | Msa0550330:intron | 35.0% |
| ! | AAATTGGTTTCAAGGAACAG+CGG | + | chr4_1:45752966-45752985 | Msa0550330:CDS | 35.0% |
| GCAATTTACATGGGTATTTG+AGG | + | chr4_1:45752999-45753018 | Msa0550330:CDS | 35.0% | |
| GAGAATGTAATAATCTTGGC+TGG | + | chr4_1:45753042-45753061 | Msa0550330:CDS | 35.0% | |
| TGGTGATCATCTATACAGAA+TGG | + | chr4_1:45753062-45753081 | Msa0550330:CDS | 35.0% | |
| !! | TCTATACAGAATGGACTACA+TGG | + | chr4_1:45753071-45753090 | Msa0550330:CDS | 35.0% |
| AATCATTGAATACCTGCACA+AGG | - | chr4_1:45753098-45753117 | None:intergenic | 35.0% | |
| ! | CCTTAGGTTTTTCCGAAAAT+TGG | - | chr4_1:45753427-45753446 | None:intergenic | 35.0% |
| ! | CCAATTTTCGGAAAAACCTA+AGG | + | chr4_1:45753424-45753443 | Msa0550330:CDS | 35.0% |
| GGTACAGTGAAATAACTCAA+AGG | + | chr4_1:45753689-45753708 | Msa0550330:intron | 35.0% | |
| TCAGAAACACATGACTATAG+AGG | - | chr4_1:45753767-45753786 | None:intergenic | 35.0% | |
| GTTTGACAATCCAAAAAGAG+AGG | - | chr4_1:45753813-45753832 | None:intergenic | 35.0% | |
| TGTCAAACCAAGATGCATTA+AGG | + | chr4_1:45753825-45753844 | Msa0550330:CDS | 35.0% | |
| GTCACCATATATTGCATCTA+TGG | + | chr4_1:45753847-45753866 | Msa0550330:CDS | 35.0% | |
| ACTCCCATAGATGCAATATA+TGG | - | chr4_1:45753854-45753873 | None:intergenic | 35.0% | |
| !! | TACTCAAGCTTCTAAAATGG+AGG | + | chr4_1:45753897-45753916 | Msa0550330:CDS | 35.0% |
| GATTTCAGATCCAAAGTCAT+TGG | - | chr4_1:45753933-45753952 | None:intergenic | 35.0% | |
| AATCATTCCTGCATCTGTTA+AGG | + | chr4_1:45753949-45753968 | Msa0550330:CDS | 35.0% | |
| TCATAATTACTCCTTTGTGG+AGG | + | chr4_1:45754030-45754049 | Msa0550330:intron | 35.0% | |
| TTGTATTGTTACCTCCACAA+AGG | - | chr4_1:45754044-45754063 | None:intergenic | 35.0% | |
| TAATATGGCTCTTACTGAAG+AGG | + | chr4_1:45754152-45754171 | Msa0550330:CDS | 35.0% | |
| GAATCTTGGAGATGTGAAAA+TGG | - | chr4_1:45754308-45754327 | None:intergenic | 35.0% | |
| !! | TTTGTTGGTGGTAAGAATCT+TGG | - | chr4_1:45754322-45754341 | None:intergenic | 35.0% |
| TACAAAGAGCAACTCAAACA+TGG | - | chr4_1:45754429-45754448 | None:intergenic | 35.0% | |
| GTTGTACACTACATTCTCTA+AGG | - | chr4_1:45754485-45754504 | None:intergenic | 35.0% | |
| !!! | AGAACCAAGGTTTTAAACTG+AGG | + | chr4_1:45754590-45754609 | Msa0550330:intron | 35.0% |
| TTTACAGGACACTGTAATGA+TGG | + | chr4_1:45754790-45754809 | Msa0550330:intron | 35.0% | |
| TTACAGGACACTGTAATGAT+GGG | + | chr4_1:45754791-45754810 | Msa0550330:intron | 35.0% | |
| TTGGAAGTAACAGCAAAATC+AGG | + | chr4_1:45754882-45754901 | Msa0550330:CDS | 35.0% | |
| GTATAATTGACAAGAATGCC+AGG | + | chr4_1:45755034-45755053 | Msa0550330:CDS | 35.0% | |
| !!! | CTATTTTTACATGTAGTGGG+AGG | - | chr4_1:45755481-45755500 | None:intergenic | 35.0% |
| !!! | GTGCTACTAGGTGGTTTTAT+TGG | - | chr4_1:45751246-45751265 | None:intergenic | 40.0% |
| ! | TTGAATGTTGTGCTACTAGG+TGG | - | chr4_1:45751255-45751274 | None:intergenic | 40.0% |
| ! | GAGTTGAATGTTGTGCTACT+AGG | - | chr4_1:45751258-45751277 | None:intergenic | 40.0% |
| ACAAGAAGACACCATTGTGA+TGG | - | chr4_1:45751655-45751674 | None:intergenic | 40.0% | |
| TCTTGGTGAGAGAATCAAAC+GGG | + | chr4_1:45751746-45751765 | Msa0550330:CDS | 40.0% | |
| GGGGTGTAAATTATAGTCCT+TGG | + | chr4_1:45751766-45751785 | Msa0550330:CDS | 40.0% | |
| CCCAACTGATTAATCATCCA+AGG | - | chr4_1:45751786-45751805 | None:intergenic | 40.0% | |
| AACCAAAGAGAGGGTTAAGA+AGG | + | chr4_1:45751818-45751837 | Msa0550330:CDS | 40.0% | |
| AAATGATGCCGTTGAGACTA+AGG | + | chr4_1:45751875-45751894 | Msa0550330:CDS | 40.0% | |
| TCAGCTTACCTTAGTCTCAA+CGG | - | chr4_1:45751886-45751905 | None:intergenic | 40.0% | |
| AGGTAAGCTGAATCATGTTG+AGG | + | chr4_1:45751895-45751914 | Msa0550330:intron | 40.0% | |
| GGTAAGCTGAATCATGTTGA+GGG | + | chr4_1:45751896-45751915 | Msa0550330:intron | 40.0% | |
| GTAAGCTGAATCATGTTGAG+GGG | + | chr4_1:45751897-45751916 | Msa0550330:intron | 40.0% | |
| GTGGTCCACAACCAAAATTA+TGG | - | chr4_1:45752059-45752078 | None:intergenic | 40.0% | |
| ! | GGACCACAGTTTAAAACCAA+TGG | + | chr4_1:45752072-45752091 | Msa0550330:intron | 40.0% |
| GACAATGATTTACTCACAGC+AGG | - | chr4_1:45752443-45752462 | None:intergenic | 40.0% | |
| GACTAAACAGGCATCAGTTA+TGG | + | chr4_1:45752469-45752488 | Msa0550330:intron | 40.0% | |
| !!! | ATTTTTCAGGTACCTGTTGG+TGG | + | chr4_1:45752530-45752549 | Msa0550330:intron | 40.0% |
| !!! | TTTTTCAGGTACCTGTTGGT+GGG | + | chr4_1:45752531-45752550 | Msa0550330:intron | 40.0% |
| CTGTTGATACAGTTGCTCAT+TGG | - | chr4_1:45752578-45752597 | None:intergenic | 40.0% | |
| ATGAGCAACTGTATCAACAG+TGG | + | chr4_1:45752578-45752597 | Msa0550330:CDS | 40.0% | |
| ! | AATGGCATCAACTTTGGAGA+TGG | + | chr4_1:45752677-45752696 | Msa0550330:CDS | 40.0% |
| ! | CAACTTTGGAGATGGATATG+TGG | + | chr4_1:45752685-45752704 | Msa0550330:CDS | 40.0% |
| ! | GCTGGGAAAAATTGGTTTCA+AGG | + | chr4_1:45752958-45752977 | Msa0550330:CDS | 40.0% |
| ATGCTGTGAGGCAATTTACA+TGG | + | chr4_1:45752989-45753008 | Msa0550330:CDS | 40.0% | |
| TGCTGTGAGGCAATTTACAT+GGG | + | chr4_1:45752990-45753009 | Msa0550330:CDS | 40.0% | |
| !! | ATCGGATTACGGATTAGTCA+AGG | + | chr4_1:45753379-45753398 | Msa0550330:CDS | 40.0% |
| TTAGTCAAGGTAGATAGCAG+AGG | + | chr4_1:45753392-45753411 | Msa0550330:CDS | 40.0% | |
| ! | AGGTCGCATCATCCAATTTT+CGG | + | chr4_1:45753412-45753431 | Msa0550330:CDS | 40.0% |
| ! | GATTTAAGATCAGCACCCTT+AGG | - | chr4_1:45753443-45753462 | None:intergenic | 40.0% |
| !! | GGGTGCTGATCTTAAATCAA+TGG | + | chr4_1:45753445-45753464 | Msa0550330:CDS | 40.0% |
| TAGTTCATTCTCTTGCCTCT+TGG | + | chr4_1:45753502-45753521 | Msa0550330:intron | 40.0% | |
| AGTTCATTCTCTTGCCTCTT+GGG | + | chr4_1:45753503-45753522 | Msa0550330:intron | 40.0% | |
| !!! | CGCGAACGTTTTAAGACTTA+AGG | + | chr4_1:45753626-45753645 | Msa0550330:intron | 40.0% |
| ! | CAAGCAGATACCTCTCTTTT+TGG | + | chr4_1:45753800-45753819 | Msa0550330:CDS | 40.0% |
| ATGGTGACCTTAATGCATCT+TGG | - | chr4_1:45753835-45753854 | None:intergenic | 40.0% | |
| TATCCCACATCCAATGACTT+TGG | + | chr4_1:45753920-45753939 | Msa0550330:CDS | 40.0% | |
| GATCCAAAGTCATTGGATGT+GGG | - | chr4_1:45753926-45753945 | None:intergenic | 40.0% | |
| AGATCCAAAGTCATTGGATG+TGG | - | chr4_1:45753927-45753946 | None:intergenic | 40.0% | |
| TTGCATTCCTTAACAGATGC+AGG | - | chr4_1:45753959-45753978 | None:intergenic | 40.0% | |
| GATGTGAAAATGGGTGTCTT+GGG | - | chr4_1:45754298-45754317 | None:intergenic | 40.0% | |
| AGATGTGAAAATGGGTGTCT+TGG | - | chr4_1:45754299-45754318 | None:intergenic | 40.0% | |
| GAGTTGCTCTTTGTAGATTG+TGG | + | chr4_1:45754434-45754453 | Msa0550330:intron | 40.0% | |
| TAGTGTACAACACTCCATTG+TGG | + | chr4_1:45754494-45754513 | Msa0550330:CDS | 40.0% | |
| AGTGTACAACACTCCATTGT+GGG | + | chr4_1:45754495-45754514 | Msa0550330:CDS | 40.0% | |
| GAACGTTCACGTTTGGATTA+CGG | + | chr4_1:45754519-45754538 | Msa0550330:CDS | 40.0% | |
| AGTTCTCGGCCAAGAAATTA+TGG | - | chr4_1:45754566-45754585 | None:intergenic | 40.0% | |
| !! | CCTTGGTTCTATAGAGTTCT+CGG | - | chr4_1:45754580-45754599 | None:intergenic | 40.0% |
| ! | GCTACCTCAGTTTAAAACCT+TGG | - | chr4_1:45754597-45754616 | None:intergenic | 40.0% |
| ! | CAAGGTTTTTGATGTCTCAG+CGG | - | chr4_1:45754690-45754709 | None:intergenic | 40.0% |
| TCAAATCAAACCCTAAGGCT+TGG | + | chr4_1:45754720-45754739 | Msa0550330:intron | 40.0% | |
| !! | AGTTTTCTAGCCAAGCCTTA+GGG | - | chr4_1:45754733-45754752 | None:intergenic | 40.0% |
| !! | TAGTTTTCTAGCCAAGCCTT+AGG | - | chr4_1:45754734-45754753 | None:intergenic | 40.0% |
| ! | AAGCAATTTCGGATTCGGTT+TGG | - | chr4_1:45754829-45754848 | None:intergenic | 40.0% |
| CTCAGAAGCAATTTCGGATT+CGG | - | chr4_1:45754834-45754853 | None:intergenic | 40.0% | |
| TGCTAGCTCAGAAGCAATTT+CGG | - | chr4_1:45754840-45754859 | None:intergenic | 40.0% | |
| ! | CTGTTACTTCCAATCCCAAT+AGG | - | chr4_1:45754875-45754894 | None:intergenic | 40.0% |
| ATTGACAAGAATGCCAGGAT+TGG | + | chr4_1:45755039-45755058 | Msa0550330:CDS | 40.0% | |
| TTGACAAGAATGCCAGGATT+GGG | + | chr4_1:45755040-45755059 | Msa0550330:CDS | 40.0% | |
| CATGAACAAAGATGTGAGCA+TGG | + | chr4_1:45755077-45755096 | Msa0550330:intron | 40.0% | |
| ! | GAGTCCATTTTGTTAGTTGG+TGG | + | chr4_1:45755132-45755151 | Msa0550330:intron | 40.0% |
| CGGATGTAAAATCCATCTTC+TGG | - | chr4_1:45755246-45755265 | None:intergenic | 40.0% | |
| !! | GATGGATTTTACATCCGATC+AGG | + | chr4_1:45755249-45755268 | Msa0550330:CDS | 40.0% |
| AATGGAGAAAGCGACAATAG+AGG | + | chr4_1:45755284-45755303 | Msa0550330:CDS | 40.0% | |
| ! | TGTCATATAAGTGGCTAGCT+TGG | + | chr4_1:45755314-45755333 | Msa0550330:exon | 40.0% |
| TGGAAATGGTAACTGAAGGC+TGG | - | chr4_1:45751311-45751330 | None:intergenic | 45.0% | |
| CTTGGTGAGAGAATCAAACG+GGG | + | chr4_1:45751747-45751766 | Msa0550330:CDS | 45.0% | |
| CGGAAAAATCTTGGAAAGCG+CGG | + | chr4_1:45751978-45751997 | Msa0550330:intron | 45.0% | |
| !!! | TGCGGCCATAATTTTGGTTG+TGG | + | chr4_1:45752051-45752070 | Msa0550330:intron | 45.0% |
| GTGTCAACTTCAGACCTTTC+AGG | + | chr4_1:45752310-45752329 | Msa0550330:intron | 45.0% | |
| GTTGCTTCCATTGTATTGGG+AGG | + | chr4_1:45752371-45752390 | Msa0550330:CDS | 45.0% | |
| AGAGGAAAAAGGTGAACACC+AGG | - | chr4_1:45752401-45752420 | None:intergenic | 45.0% | |
| ! | GTAGCAGCTCTTTTGGTAAG+AGG | - | chr4_1:45752419-45752438 | None:intergenic | 45.0% |
| AATAGGTGCGAGCAATGTGA+CGG | - | chr4_1:45752652-45752671 | None:intergenic | 45.0% | |
| ! | CACATTGCTCGCACCTATTT+TGG | + | chr4_1:45752653-45752672 | Msa0550330:CDS | 45.0% |
| !! | GCTCGCACCTATTTTGGAAA+TGG | + | chr4_1:45752659-45752678 | Msa0550330:CDS | 45.0% |
| ! | CTTTGGAGATGGATATGTGG+AGG | + | chr4_1:45752688-45752707 | Msa0550330:CDS | 45.0% |
| ! | CAATTTTTCCCAGCTTCTCC+TGG | - | chr4_1:45752952-45752971 | None:intergenic | 45.0% |
| CAGGAGAAGCTGGGAAAAAT+TGG | + | chr4_1:45752950-45752969 | Msa0550330:CDS | 45.0% | |
| ! | ACAGTATCATGTGCTGCTGT+TGG | + | chr4_1:45753223-45753242 | Msa0550330:CDS | 45.0% |
| CACGACTGAAAAACAGGCAA+TGG | - | chr4_1:45753358-45753377 | None:intergenic | 45.0% | |
| !! | CCTGTTTTTCAGTCGTGCAT+CGG | + | chr4_1:45753361-45753380 | Msa0550330:intron | 45.0% |
| TTCAGTCGTGCATCGGATTA+CGG | + | chr4_1:45753368-45753387 | Msa0550330:intron | 45.0% | |
| TATGCGAACATGTTCCCAAG+AGG | - | chr4_1:45753520-45753539 | None:intergenic | 45.0% | |
| TCTTGGGAACATGTTCGCAT+AGG | + | chr4_1:45753519-45753538 | Msa0550330:intron | 45.0% | |
| GGAGACTATTGGGAAGACAT+TGG | + | chr4_1:45754105-45754124 | Msa0550330:CDS | 45.0% | |
| ATGGCTCTTACTGAAGAGGT+AGG | + | chr4_1:45754156-45754175 | Msa0550330:intron | 45.0% | |
| GTGGATGCAATAATCTCGCA+TGG | + | chr4_1:45754453-45754472 | Msa0550330:CDS | 45.0% | |
| CCGAGAACTCTATAGAACCA+AGG | + | chr4_1:45754577-45754596 | Msa0550330:intron | 45.0% | |
| GAGATCTAGTGCAGCTAATG+CGG | + | chr4_1:45754649-45754668 | Msa0550330:intron | 45.0% | |
| TGATTTGAGCTGCAACGTCA+AGG | - | chr4_1:45754708-45754727 | None:intergenic | 45.0% | |
| GCAGCTCAAATCAAACCCTA+AGG | + | chr4_1:45754715-45754734 | Msa0550330:intron | 45.0% | |
| AATTGCTTCTGAGCTAGCAC+AGG | + | chr4_1:45754841-45754860 | Msa0550330:CDS | 45.0% | |
| ATTGCTTCTGAGCTAGCACA+GGG | + | chr4_1:45754842-45754861 | Msa0550330:CDS | 45.0% | |
| CACAGGGAAAGGTTCCTATT+GGG | + | chr4_1:45754858-45754877 | Msa0550330:CDS | 45.0% | |
| GGAAAGGTTCCTATTGGGAT+TGG | + | chr4_1:45754863-45754882 | Msa0550330:CDS | 45.0% | |
| GATGACATCTTTCCCAATCC+TGG | - | chr4_1:45755055-45755074 | None:intergenic | 45.0% | |
| GAAGCAGATAGACCAGAAGA+TGG | + | chr4_1:45755231-45755250 | Msa0550330:CDS | 45.0% | |
| GGACAGCACTGTCATATAAG+TGG | + | chr4_1:45755305-45755324 | Msa0550330:exon | 45.0% | |
| GGCCTTCTTAACCCTCTCTT+TGG | - | chr4_1:45751823-45751842 | None:intergenic | 50.0% | |
| AGGGTTAAGAAGGCCAAACC+TGG | + | chr4_1:45751828-45751847 | Msa0550330:CDS | 50.0% | |
| AGCAGACACAACACCAGGTT+TGG | - | chr4_1:45751844-45751863 | None:intergenic | 50.0% | |
| AGAACAGCAGACACAACACC+AGG | - | chr4_1:45751849-45751868 | None:intergenic | 50.0% | |
| TGCAGCCACATCAGCTATAG+TGG | - | chr4_1:45752111-45752130 | None:intergenic | 50.0% | |
| ! | TGCGACTGCAATTGCTGTTG+CGG | + | chr4_1:45752161-45752180 | Msa0550330:intron | 50.0% |
| GCTTCCATTGTATTGGGAGG+AGG | + | chr4_1:45752374-45752393 | Msa0550330:CDS | 50.0% | |
| AGGACCTCCTCCCAATACAA+TGG | - | chr4_1:45752381-45752400 | None:intergenic | 50.0% | |
| ATTGTATTGGGAGGAGGTCC+TGG | + | chr4_1:45752380-45752399 | Msa0550330:CDS | 50.0% | |
| ! | AGCAGGTGTAGCAGCTCTTT+TGG | - | chr4_1:45752426-45752445 | None:intergenic | 50.0% |
| ! | TACCTGTTGGTGGGTGCTAT+AGG | + | chr4_1:45752540-45752559 | Msa0550330:CDS | 50.0% |
| CCGATGCACGACTGAAAAAC+AGG | - | chr4_1:45753364-45753383 | None:intergenic | 50.0% | |
| ACGTGAACGTTCACCCACAA+TGG | - | chr4_1:45754511-45754530 | None:intergenic | 50.0% | |
| TGTGGGTGAACGTTCACGTT+TGG | + | chr4_1:45754512-45754531 | Msa0550330:CDS | 50.0% | |
| TTCTGAGCTAGCACAGGGAA+AGG | + | chr4_1:45754847-45754866 | Msa0550330:CDS | 50.0% | |
| GCACAGGGAAAGGTTCCTAT+TGG | + | chr4_1:45754857-45754876 | Msa0550330:CDS | 50.0% | |
| TTTCCCCATCCCTCTCGTGA+AGG | + | chr4_1:45751206-45751225 | Msa0550330:five_prime_UTR | 55.0% | |
| AGAGCCTTCACGAGAGGGAT+GGG | - | chr4_1:45751213-45751232 | None:intergenic | 55.0% | |
| AGCTGATGTGGCTGCAACTG+CGG | + | chr4_1:45752115-45752134 | Msa0550330:intron | 55.0% | |
| AGCCTATAGCACCCACCAAC+AGG | - | chr4_1:45752545-45752564 | None:intergenic | 55.0% | |
| ACTCAAACGCCAGGAGAAGC+TGG | + | chr4_1:45752940-45752959 | Msa0550330:CDS | 55.0% | |
| CTCAAACGCCAGGAGAAGCT+GGG | + | chr4_1:45752941-45752960 | Msa0550330:CDS | 55.0% | |
| AAGGAACAGCGGATGCTGTG+AGG | + | chr4_1:45752977-45752996 | Msa0550330:CDS | 55.0% | |
| GGACTACATGGACCTTGTGC+AGG | + | chr4_1:45753083-45753102 | Msa0550330:CDS | 55.0% | |
| !! | CATGTGCTGCTGTTGGTGAC+AGG | + | chr4_1:45753230-45753249 | Msa0550330:CDS | 55.0% |
| ! | GGATTACGGTGTTGAGCTCC+AGG | + | chr4_1:45754533-45754552 | Msa0550330:CDS | 55.0% |
| TGTACGCGCGCAGAGTAGAA+GGG | + | chr4_1:45755453-45755472 | Msa0550330:three_prime_UTR | 55.0% | |
| GAGCCTTCACGAGAGGGATG+GGG | - | chr4_1:45751212-45751231 | None:intergenic | 60.0% | |
| CAGAGCCTTCACGAGAGGGA+TGG | - | chr4_1:45751214-45751233 | None:intergenic | 60.0% | |
| CATCCCTCTCGTGAAGGCTC+TGG | + | chr4_1:45751212-45751231 | Msa0550330:five_prime_UTR | 60.0% | |
| GAGCCAGAGCCTTCACGAGA+GGG | - | chr4_1:45751218-45751237 | None:intergenic | 60.0% | |
| TGAGCCAGAGCCTTCACGAG+AGG | - | chr4_1:45751219-45751238 | None:intergenic | 60.0% | |
| TCATGTTGAGGGGTCCGTCG+TGG | + | chr4_1:45751907-45751926 | Msa0550330:intron | 60.0% | |
| TTGGCGGCTACTCAAACGCC+AGG | + | chr4_1:45752931-45752950 | Msa0550330:CDS | 60.0% | |
| GTGTACGCGCGCAGAGTAGA+AGG | + | chr4_1:45755452-45755471 | Msa0550330:three_prime_UTR | 60.0% | |
| TGTGGCTGCAACTGCGGCCG+CGG | + | chr4_1:45752121-45752140 | Msa0550330:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 45751201 | 45755569 | 45751201 | ID=Msa0550330;Name=Msa0550330 |
| chr4_1 | mRNA | 45751201 | 45755569 | 45751201 | ID=Msa0550330-mRNA-1;Parent=Msa0550330;Name=Msa0550330-mRNA-1;_AED=0.10;_eAED=0.10;_QI=331|0.92|0.92|1|0.92|0.85|14|246|537 |
| chr4_1 | exon | 45751201 | 45751473 | 45751201 | ID=Msa0550330-mRNA-1:exon:12077;Parent=Msa0550330-mRNA-1 |
| chr4_1 | exon | 45751602 | 45751896 | 45751602 | ID=Msa0550330-mRNA-1:exon:12078;Parent=Msa0550330-mRNA-1 |
| chr4_1 | exon | 45752323 | 45752445 | 45752323 | ID=Msa0550330-mRNA-1:exon:12079;Parent=Msa0550330-mRNA-1 |
| chr4_1 | exon | 45752539 | 45752709 | 45752539 | ID=Msa0550330-mRNA-1:exon:12080;Parent=Msa0550330-mRNA-1 |
| chr4_1 | exon | 45752928 | 45753104 | 45752928 | ID=Msa0550330-mRNA-1:exon:12081;Parent=Msa0550330-mRNA-1 |
| chr4_1 | exon | 45753196 | 45753251 | 45753196 | ID=Msa0550330-mRNA-1:exon:12082;Parent=Msa0550330-mRNA-1 |
| chr4_1 | exon | 45753373 | 45753466 | 45753373 | ID=Msa0550330-mRNA-1:exon:12083;Parent=Msa0550330-mRNA-1 |
| chr4_1 | exon | 45753773 | 45753985 | 45753773 | ID=Msa0550330-mRNA-1:exon:12084;Parent=Msa0550330-mRNA-1 |
| chr4_1 | exon | 45754093 | 45754173 | 45754093 | ID=Msa0550330-mRNA-1:exon:12085;Parent=Msa0550330-mRNA-1 |
| chr4_1 | exon | 45754271 | 45754357 | 45754271 | ID=Msa0550330-mRNA-1:exon:12086;Parent=Msa0550330-mRNA-1 |
| chr4_1 | exon | 45754450 | 45754554 | 45754450 | ID=Msa0550330-mRNA-1:exon:12087;Parent=Msa0550330-mRNA-1 |
| chr4_1 | exon | 45754797 | 45754903 | 45754797 | ID=Msa0550330-mRNA-1:exon:12088;Parent=Msa0550330-mRNA-1 |
| chr4_1 | exon | 45755029 | 45755089 | 45755029 | ID=Msa0550330-mRNA-1:exon:12089;Parent=Msa0550330-mRNA-1 |
| chr4_1 | exon | 45755222 | 45755569 | 45755222 | ID=Msa0550330-mRNA-1:exon:12090;Parent=Msa0550330-mRNA-1 |
| chr4_1 | five_prime_UTR | 45751201 | 45751473 | 45751201 | ID=Msa0550330-mRNA-1:five_prime_utr;Parent=Msa0550330-mRNA-1 |
| chr4_1 | five_prime_UTR | 45751602 | 45751659 | 45751602 | ID=Msa0550330-mRNA-1:five_prime_utr;Parent=Msa0550330-mRNA-1 |
| chr4_1 | CDS | 45751660 | 45751896 | 45751660 | ID=Msa0550330-mRNA-1:cds;Parent=Msa0550330-mRNA-1 |
| chr4_1 | CDS | 45752323 | 45752445 | 45752323 | ID=Msa0550330-mRNA-1:cds;Parent=Msa0550330-mRNA-1 |
| chr4_1 | CDS | 45752539 | 45752709 | 45752539 | ID=Msa0550330-mRNA-1:cds;Parent=Msa0550330-mRNA-1 |
| chr4_1 | CDS | 45752928 | 45753104 | 45752928 | ID=Msa0550330-mRNA-1:cds;Parent=Msa0550330-mRNA-1 |
| chr4_1 | CDS | 45753196 | 45753251 | 45753196 | ID=Msa0550330-mRNA-1:cds;Parent=Msa0550330-mRNA-1 |
| chr4_1 | CDS | 45753373 | 45753466 | 45753373 | ID=Msa0550330-mRNA-1:cds;Parent=Msa0550330-mRNA-1 |
| chr4_1 | CDS | 45753773 | 45753985 | 45753773 | ID=Msa0550330-mRNA-1:cds;Parent=Msa0550330-mRNA-1 |
| chr4_1 | CDS | 45754093 | 45754173 | 45754093 | ID=Msa0550330-mRNA-1:cds;Parent=Msa0550330-mRNA-1 |
| chr4_1 | CDS | 45754271 | 45754357 | 45754271 | ID=Msa0550330-mRNA-1:cds;Parent=Msa0550330-mRNA-1 |
| chr4_1 | CDS | 45754450 | 45754554 | 45754450 | ID=Msa0550330-mRNA-1:cds;Parent=Msa0550330-mRNA-1 |
| chr4_1 | CDS | 45754797 | 45754903 | 45754797 | ID=Msa0550330-mRNA-1:cds;Parent=Msa0550330-mRNA-1 |
| chr4_1 | CDS | 45755029 | 45755089 | 45755029 | ID=Msa0550330-mRNA-1:cds;Parent=Msa0550330-mRNA-1 |
| chr4_1 | CDS | 45755222 | 45755323 | 45755222 | ID=Msa0550330-mRNA-1:cds;Parent=Msa0550330-mRNA-1 |
| chr4_1 | three_prime_UTR | 45755324 | 45755569 | 45755324 | ID=Msa0550330-mRNA-1:three_prime_utr;Parent=Msa0550330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
