Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316280 | XP_013462770.1 | 84.949 | 392 | 9 | 3 | 1 | 342 | 1 | 392 | 0.0 | 637 |
| Msa0316280 | XP_013462770.1 | 95.000 | 80 | 4 | 0 | 342 | 421 | 71 | 150 | 2.62e-41 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316280 | sp|Q94B38|GPT2_ARATH | 68.947 | 380 | 70 | 5 | 3 | 342 | 14 | 385 | 1.85e-170 | 486 |
| Msa0316280 | sp|Q94B38|GPT2_ARATH | 86.842 | 76 | 10 | 0 | 346 | 421 | 68 | 143 | 1.02e-37 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078510 | Msa0316280 | 0.814160 | 1.774353e-51 | -8.615850e-47 |
| Msa0126290 | Msa0316280 | 0.816912 | 4.329156e-52 | -8.615850e-47 |
| Msa0171170 | Msa0316280 | 0.818748 | 1.666804e-52 | -8.615850e-47 |
| Msa0196370 | Msa0316280 | 0.899075 | 2.837604e-77 | -8.615850e-47 |
| Msa0238260 | Msa0316280 | 0.945017 | 6.697557e-104 | -8.615850e-47 |
| Msa0238280 | Msa0316280 | 0.846743 | 1.793260e-59 | -8.615850e-47 |
| Msa0275690 | Msa0316280 | 0.898258 | 6.326712e-77 | -8.615850e-47 |
| Msa0316270 | Msa0316280 | 0.893245 | 7.522506e-75 | -8.615850e-47 |
| Msa0316280 | Msa0479740 | 0.814215 | 1.725567e-51 | -8.615850e-47 |
| Msa0316280 | Msa0550330 | 0.882797 | 7.704225e-71 | -8.615850e-47 |
| Msa0316280 | Msa0605750 | 0.816046 | 6.768228e-52 | -8.615850e-47 |
| Msa0316280 | Msa0646780 | 0.871556 | 6.245604e-67 | -8.615850e-47 |
| Msa0316280 | Msa0686360 | 0.834253 | 3.335458e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316280 | MtrunA17_Chr2g0288011 | 84.949 | 392 | 9 | 3 | 1 | 342 | 1 | 392 | 0.0 | 637 |
| Msa0316280 | MtrunA17_Chr2g0288011 | 95.000 | 80 | 4 | 0 | 342 | 421 | 71 | 150 | 2.41e-45 | 162 |
| Msa0316280 | MtrunA17_Chr4g0074541 | 73.265 | 389 | 57 | 3 | 1 | 342 | 1 | 389 | 1.33e-180 | 509 |
| Msa0316280 | MtrunA17_Chr4g0074541 | 88.158 | 76 | 9 | 0 | 346 | 421 | 72 | 147 | 4.21e-39 | 145 |
| Msa0316280 | MtrunA17_Chr3g0097931 | 68.548 | 372 | 65 | 7 | 19 | 342 | 31 | 398 | 7.39e-162 | 462 |
| Msa0316280 | MtrunA17_Chr3g0097931 | 75.949 | 79 | 16 | 3 | 343 | 421 | 81 | 156 | 1.05e-29 | 119 |
| Msa0316280 | MtrunA17_Chr2g0291851 | 45.210 | 334 | 138 | 5 | 47 | 342 | 66 | 392 | 7.45e-81 | 255 |
| Msa0316280 | MtrunA17_Chr6g0449891 | 40.248 | 323 | 144 | 3 | 60 | 342 | 92 | 405 | 2.09e-63 | 210 |
| Msa0316280 | MtrunA17_Chr4g0046561 | 34.704 | 389 | 190 | 7 | 6 | 341 | 8 | 385 | 5.64e-63 | 209 |
| Msa0316280 | MtrunA17_Chr4g0058971 | 38.776 | 294 | 143 | 2 | 86 | 342 | 81 | 374 | 6.06e-60 | 200 |
| Msa0316280 | MtrunA17_Chr5g0419001 | 35.905 | 337 | 166 | 5 | 57 | 346 | 65 | 398 | 1.46e-58 | 197 |
| Msa0316280 | MtrunA17_Chr3g0117501 | 37.059 | 340 | 165 | 4 | 40 | 342 | 72 | 399 | 4.09e-56 | 191 |
| Msa0316280 | MtrunA17_Chr1g0160071 | 25.263 | 285 | 170 | 4 | 97 | 341 | 21 | 302 | 7.30e-21 | 93.2 |
| Msa0316280 | MtrunA17_Chr3g0114581 | 25.000 | 284 | 170 | 4 | 97 | 340 | 22 | 302 | 1.68e-20 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316280 | AT1G61800.1 | 68.947 | 380 | 70 | 5 | 3 | 342 | 14 | 385 | 1.88e-171 | 486 |
| Msa0316280 | AT1G61800.1 | 86.842 | 76 | 10 | 0 | 346 | 421 | 68 | 143 | 1.03e-38 | 144 |
| Msa0316280 | AT1G61800.2 | 68.490 | 384 | 73 | 5 | 3 | 346 | 14 | 389 | 4.46e-171 | 486 |
| Msa0316280 | AT1G61800.2 | 86.842 | 76 | 10 | 0 | 346 | 421 | 68 | 143 | 1.73e-38 | 144 |
| Msa0316280 | AT5G54800.1 | 67.553 | 376 | 68 | 5 | 10 | 342 | 21 | 385 | 1.07e-159 | 456 |
| Msa0316280 | AT5G54800.1 | 73.171 | 82 | 18 | 1 | 344 | 421 | 62 | 143 | 5.78e-31 | 123 |
| Msa0316280 | AT5G17630.1 | 42.077 | 366 | 172 | 4 | 30 | 356 | 51 | 415 | 3.08e-90 | 280 |
| Msa0316280 | AT4G03950.1 | 53.405 | 279 | 77 | 5 | 81 | 342 | 9 | 251 | 2.19e-74 | 234 |
| Msa0316280 | AT4G03950.1 | 74.138 | 58 | 13 | 1 | 364 | 421 | 9 | 64 | 1.02e-16 | 80.5 |
| Msa0316280 | AT5G46110.4 | 38.488 | 291 | 140 | 2 | 88 | 341 | 106 | 394 | 3.90e-61 | 204 |
| Msa0316280 | AT5G46110.1 | 38.488 | 291 | 140 | 2 | 88 | 341 | 106 | 394 | 4.48e-61 | 204 |
| Msa0316280 | AT5G46110.2 | 38.652 | 282 | 134 | 2 | 97 | 341 | 2 | 281 | 2.21e-60 | 199 |
| Msa0316280 | AT5G46110.3 | 38.929 | 280 | 143 | 3 | 88 | 341 | 106 | 383 | 4.61e-58 | 196 |
| Msa0316280 | AT3G01550.1 | 36.513 | 304 | 154 | 2 | 78 | 342 | 67 | 370 | 3.13e-56 | 191 |
| Msa0316280 | AT5G33320.1 | 38.699 | 292 | 142 | 2 | 88 | 342 | 106 | 397 | 5.77e-53 | 183 |
| Msa0316280 | AT3G01550.2 | 35.526 | 304 | 152 | 3 | 78 | 342 | 67 | 365 | 3.88e-52 | 180 |
| Msa0316280 | AT1G21870.1 | 24.561 | 285 | 172 | 4 | 97 | 341 | 22 | 303 | 2.24e-20 | 92.4 |
| Msa0316280 | AT1G77610.1 | 25.263 | 285 | 170 | 4 | 97 | 341 | 16 | 297 | 2.85e-20 | 92.0 |
Find 80 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTCACATTCTTTCTTT+TGG | 0.109741 | 2_4:+13205750 | None:intergenic |
| CTAAAGTTAACTTGGATTTC+TGG | 0.136067 | 2_4:-13205477 | Msa0316280:CDS |
| CAAAAGTTAACTTGGATTTC+TGG | 0.138239 | 2_4:-13200975 | Msa0316280:CDS |
| AATTCTTGTTTCAGGATTTA+TGG | 0.170342 | 2_4:-13204761 | Msa0316280:intron |
| CTCTCATTGTTGCCAATAAT+TGG | 0.171795 | 2_4:-13204899 | Msa0316280:CDS |
| CAAATTTGGCATTTGTATTC+AGG | 0.181063 | 2_4:-13204726 | Msa0316280:CDS |
| CAGAAATCCAAGTTAACTTT+AGG | 0.181603 | 2_4:+13205478 | None:intergenic |
| GGGAGCTATGATATCAAATT+TGG | 0.191205 | 2_4:-13204740 | Msa0316280:CDS |
| CAGAAATCCAAGTTAACTTT+TGG | 0.206865 | 2_4:+13200976 | None:intergenic |
| GGAGCAGCTATTGCAATTCT+TGG | 0.270973 | 2_4:-13204214 | Msa0316280:CDS |
| TGAAAGATAGAGAGGTTTCT+TGG | 0.315407 | 2_4:+13205804 | None:intergenic |
| AGTGCGCAACCACCAATTAT+TGG | 0.320937 | 2_4:+13204887 | None:intergenic |
| TGTTAATCTCATGGGCTACT+AGG | 0.323213 | 2_4:-13205513 | Msa0316280:CDS |
| ATTTCCTATGCTAAATGTTA+AGG | 0.334042 | 2_4:+13204312 | None:intergenic |
| TTAAAATCTCATGGGCTACT+AGG | 0.360695 | 2_4:-13201011 | Msa0316280:CDS |
| ATTCTTGTTTCAGGATTTAT+GGG | 0.368019 | 2_4:-13204760 | Msa0316280:intron |
| CTCTCATTATGTTAATCTCA+TGG | 0.373482 | 2_4:-13205522 | Msa0316280:CDS |
| TCCACTTTGTCCTTAGCTGC+TGG | 0.373599 | 2_4:-13201047 | Msa0316280:CDS |
| GCAGCTCAAAAGCTTAAGAT+TGG | 0.382192 | 2_4:-13201161 | Msa0316280:CDS |
| AGAAATCCAAGTTAACTTTA+GGG | 0.384705 | 2_4:+13205479 | None:intergenic |
| AGCTGCTCCAAGAGCATTGA+TGG | 0.393145 | 2_4:+13204228 | None:intergenic |
| GGCAACAATGAGAGGTAAAC+TGG | 0.394912 | 2_4:+13204908 | None:intergenic |
| GAACTCAGTTTCAATATGAT+TGG | 0.398745 | 2_4:-13204851 | Msa0316280:intron |
| AGTGAATGAAACTGCTACTT+TGG | 0.405993 | 2_4:+13205006 | None:intergenic |
| TTTCCTATGCTAAATGTTAA+GGG | 0.408792 | 2_4:+13204313 | None:intergenic |
| GCAGCTCAAAAGCTCAAGAT+TGG | 0.427817 | 2_4:-13205661 | Msa0316280:CDS |
| TCCACTTTATCCTTAGCTGC+TGG | 0.430126 | 2_4:-13205547 | Msa0316280:CDS |
| TTCTCAAAGAAAGGAATGAA+TGG | 0.434361 | 2_4:-13204697 | Msa0316280:CDS |
| AGAATTGAAAATTGAGACCT+TGG | 0.444612 | 2_4:+13205877 | None:intergenic |
| CTTCAACCCATCAATGCTCT+TGG | 0.453683 | 2_4:-13204235 | Msa0316280:CDS |
| CTCATGATGTTAAAATCTCA+TGG | 0.458787 | 2_4:-13201020 | Msa0316280:CDS |
| GTAGCTGTGGCACACACAAT+TGG | 0.470268 | 2_4:-13205055 | Msa0316280:CDS |
| ACCAGCAGCTAAGGATAAAG+TGG | 0.472955 | 2_4:+13205546 | None:intergenic |
| GTTAATCTCATGGGCTACTA+GGG | 0.473011 | 2_4:-13205512 | Msa0316280:CDS |
| TGAGGCCCCTAAAGTTAACT+TGG | 0.473088 | 2_4:-13205485 | Msa0316280:CDS |
| CATCATCAAGAGTGGAGAAC+CGG | 0.480485 | 2_4:-13204981 | Msa0316280:CDS |
| TGAGGCCCCAAAAGTTAACT+TGG | 0.487663 | 2_4:-13200983 | Msa0316280:CDS |
| TAGCTGTGGCACACACAATT+GGG | 0.496344 | 2_4:-13205054 | Msa0316280:CDS |
| AGGAATATATTCTCAAAGAA+AGG | 0.498153 | 2_4:-13204706 | Msa0316280:CDS |
| ATGAATGGGATGAGTGTTAG+TGG | 0.502849 | 2_4:-13204682 | Msa0316280:CDS |
| TGGCACCTTCATCTATTCAC+AGG | 0.508331 | 2_4:-13204194 | Msa0316280:intron |
| TCTCAAAGAAAGGAATGAAT+GGG | 0.514111 | 2_4:-13204696 | Msa0316280:CDS |
| TGAGTGGATGAAAGATAGAG+AGG | 0.518129 | 2_4:+13205796 | None:intergenic |
| CAGCTCAAAAGCTCAAGATT+GGG | 0.521252 | 2_4:-13205660 | Msa0316280:CDS |
| TCTCATTATGTTAATCTCAT+GGG | 0.522285 | 2_4:-13205521 | Msa0316280:CDS |
| CCCTCCACAACAATAGCAAA+AGG | 0.527529 | 2_4:+13204610 | None:intergenic |
| TAAAATCTCATGGGCTACTA+GGG | 0.528003 | 2_4:-13201010 | Msa0316280:CDS |
| CATGAGAGAACCAGCAGCTA+AGG | 0.533265 | 2_4:+13201037 | None:intergenic |
| AATGAGAGAACCAGCAGCTA+AGG | 0.537711 | 2_4:+13205537 | None:intergenic |
| TCAAAATGTTGAACAAAACA+TGG | 0.542137 | 2_4:-13205845 | Msa0316280:CDS |
| TCATTGTTGCCAATAATTGG+TGG | 0.544739 | 2_4:-13204896 | Msa0316280:CDS |
| GAAAGAGTGTCAAGCTTATG+AGG | 0.545042 | 2_4:-13201234 | Msa0316280:CDS |
| GTGGAAGTAAGCCAAGGGTA+AGG | 0.549768 | 2_4:+13201065 | None:intergenic |
| CTAGTATCAAGATTCATGCT+TGG | 0.552737 | 2_4:-13204947 | Msa0316280:CDS |
| GACAGAATGTCAAGCTTATG+AGG | 0.561271 | 2_4:-13205734 | Msa0316280:CDS |
| ACCAGCAGCTAAGGACAAAG+TGG | 0.561295 | 2_4:+13201046 | None:intergenic |
| GAAATCCAAGTTAACTTTAG+GGG | 0.565634 | 2_4:+13205480 | None:intergenic |
| CTTATGAGGCTGATAGATCA+AGG | 0.566563 | 2_4:-13201220 | Msa0316280:CDS |
| CTTATGAGGCTGATAGATCA+AGG | 0.566563 | 2_4:-13205720 | Msa0316280:CDS |
| TCTCCCTTAACATTTAGCAT+AGG | 0.566878 | 2_4:-13204316 | Msa0316280:CDS |
| GTGGAAGTGAGCCAAGGGTA+AGG | 0.571201 | 2_4:+13205565 | None:intergenic |
| TCATGATGTTAAAATCTCAT+GGG | 0.583357 | 2_4:-13201019 | Msa0316280:CDS |
| ATGGGCTACTAGGGTTGCTG+AGG | 0.583408 | 2_4:-13201001 | Msa0316280:CDS |
| ATGGGCTACTAGGGTTGCTG+AGG | 0.583408 | 2_4:-13205503 | Msa0316280:CDS |
| ATTGGGTATGCAGGTAGCTG+TGG | 0.585242 | 2_4:-13205068 | Msa0316280:intron |
| ATTCACCTGTGAATAGATGA+AGG | 0.585857 | 2_4:+13204189 | None:intergenic |
| GATACTAGCACACTGAAAGC+CGG | 0.587523 | 2_4:+13204962 | None:intergenic |
| GACAAAGTGGAAGTAAGCCA+AGG | 0.591921 | 2_4:+13201059 | None:intergenic |
| TTCACTCACATCATCAAGAG+TGG | 0.593759 | 2_4:-13204989 | Msa0316280:CDS |
| CAAGTACATCATCACTTCCA+AGG | 0.595632 | 2_4:-13205894 | Msa0316280:CDS |
| TGGTGTGTGAAAGATAATGA+TGG | 0.599746 | 2_4:+13204258 | None:intergenic |
| AGTTCAATGTTAATCTCTAG+TGG | 0.602873 | 2_4:+13201197 | None:intergenic |
| AGTTCAATGTTAATCTCTAG+TGG | 0.602873 | 2_4:+13205697 | None:intergenic |
| CAATTATTGGCAACAATGAG+AGG | 0.616851 | 2_4:+13204900 | None:intergenic |
| GATAAAGTGGAAGTGAGCCA+AGG | 0.631302 | 2_4:+13205559 | None:intergenic |
| CAAAATGTTGAACAAAACAT+GGG | 0.645558 | 2_4:-13205844 | Msa0316280:CDS |
| GCTGCTCCAAGAGCATTGAT+GGG | 0.645674 | 2_4:+13204229 | None:intergenic |
| ATAAAGTGGAAGTGAGCCAA+GGG | 0.650767 | 2_4:+13205560 | None:intergenic |
| ACAAAGTGGAAGTAAGCCAA+GGG | 0.653954 | 2_4:+13201060 | None:intergenic |
| AGAGCATTGATGGGTTGAAG+TGG | 0.671770 | 2_4:+13204238 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTACTTAAATTATTAC+AGG | - | chr2_4:13201675-13201694 | Msa0316280:intron | 10.0% |
| !! | GCTTTAATTAATAATAATTT+GGG | - | chr2_4:13202440-13202459 | Msa0316280:intron | 10.0% |
| !!! | TTTTTTTTTTTTATGTTTAC+AGG | - | chr2_4:13202464-13202483 | Msa0316280:intron | 10.0% |
| !!! | TTTTATCATATTCTTTTTAA+TGG | + | chr2_4:13203224-13203243 | None:intergenic | 10.0% |
| !! | ACAATGTAAAATAATAATAA+AGG | + | chr2_4:13203558-13203577 | None:intergenic | 10.0% |
| !! | AATTAGAATGAAAAGAAAAT+GGG | + | chr2_4:13201450-13201469 | None:intergenic | 15.0% |
| !! | CGCTTTAATTAATAATAATT+TGG | - | chr2_4:13202439-13202458 | Msa0316280:intron | 15.0% |
| !! | ATCTTTATAGTTTATACTTT+GGG | - | chr2_4:13202734-13202753 | Msa0316280:intron | 15.0% |
| !!! | AAAAAATATGAGTTTTCAAT+TGG | - | chr2_4:13203077-13203096 | Msa0316280:intron | 15.0% |
| !! | TTGTCAGATTAAAATTTATA+TGG | - | chr2_4:13203143-13203162 | Msa0316280:intron | 15.0% |
| !! | TGTCAGATTAAAATTTATAT+GGG | - | chr2_4:13203144-13203163 | Msa0316280:intron | 15.0% |
| !! | AATTATGCATAAAAATTTGT+AGG | + | chr2_4:13205206-13205225 | None:intergenic | 15.0% |
| !! | ATATATATACATTGAAGAAA+TGG | - | chr2_4:13205239-13205258 | Msa0316280:intron | 15.0% |
| !! | ATTAGAATGAAAAGAAAATG+GGG | + | chr2_4:13201449-13201468 | None:intergenic | 20.0% |
| !! | CAATTAGAATGAAAAGAAAA+TGG | + | chr2_4:13201451-13201470 | None:intergenic | 20.0% |
| !! | ACCTAAGAAATTTCAAAATT+GGG | - | chr2_4:13201787-13201806 | Msa0316280:intron | 20.0% |
| !! | TATACTAGTTCAAATTTCTT+CGG | - | chr2_4:13202413-13202432 | Msa0316280:intron | 20.0% |
| !!! | TTTTTTTTTATGTTTACAGG+TGG | - | chr2_4:13202467-13202486 | Msa0316280:intron | 20.0% |
| !!! | TTTTTTTTATGTTTACAGGT+GGG | - | chr2_4:13202468-13202487 | Msa0316280:intron | 20.0% |
| !! | ATGACACTTGATTATATAAA+TGG | + | chr2_4:13202516-13202535 | None:intergenic | 20.0% |
| !! | GATCTTTATAGTTTATACTT+TGG | - | chr2_4:13202733-13202752 | Msa0316280:intron | 20.0% |
| !!! | TTAGCTAACAATTTTCTATT+AGG | - | chr2_4:13203359-13203378 | Msa0316280:intron | 20.0% |
| !!! | TTTCTATTAGGTTCATTTTA+TGG | - | chr2_4:13203371-13203390 | Msa0316280:intron | 20.0% |
| !!! | ATTTTATGGCAAATTCTATT+TGG | - | chr2_4:13203385-13203404 | Msa0316280:intron | 20.0% |
| !!! | TTTTTCTTGACTTTTATTTG+TGG | - | chr2_4:13203627-13203646 | Msa0316280:intron | 20.0% |
| !! | TGTAAGTAGTAAAGTTAAAA+TGG | - | chr2_4:13203846-13203865 | Msa0316280:intron | 20.0% |
| !! | GTTCAATTAAGTTACAAATA+AGG | + | chr2_4:13203914-13203933 | None:intergenic | 20.0% |
| !! | TCTAATAAATCCATACTTAA+GGG | + | chr2_4:13204138-13204157 | None:intergenic | 20.0% |
| !! | ATCGTAAATCAATTTAATAG+AGG | - | chr2_4:13204221-13204240 | Msa0316280:CDS | 20.0% |
| !!! | TCTTAATGCTTTTTATCATT+TGG | + | chr2_4:13204247-13204266 | None:intergenic | 20.0% |
| !! | ATCATTAGATCATAATACAA+AGG | - | chr2_4:13204311-13204330 | Msa0316280:CDS | 20.0% |
| !!! | AACTTGATAATGACATTTAT+CGG | - | chr2_4:13204508-13204527 | Msa0316280:intron | 20.0% |
| !! | TCATCAACATAAACAAATAA+AGG | + | chr2_4:13204903-13204922 | None:intergenic | 20.0% |
| !!! | ATGTAAGTGTTTTTTTAACT+TGG | - | chr2_4:13204958-13204977 | Msa0316280:CDS | 20.0% |
| !!! | TGTAAGTGTTTTTTTAACTT+GGG | - | chr2_4:13204959-13204978 | Msa0316280:CDS | 20.0% |
| !! | ATATATGTTGCATTAATAAG+AGG | + | chr2_4:13205454-13205473 | None:intergenic | 20.0% |
| !! | CAAAATTCTCATTAAATGAA+AGG | + | chr2_4:13205587-13205606 | None:intergenic | 20.0% |
| !!! | GTTTTGTTCAACATTTTGAA+TGG | + | chr2_4:13201026-13201045 | None:intergenic | 25.0% |
| ! | TCAAAATGTTGAACAAAACA+TGG | - | chr2_4:13201027-13201046 | Msa0316280:CDS | 25.0% |
| ! | CAAAATGTTGAACAAAACAT+GGG | - | chr2_4:13201028-13201047 | Msa0316280:CDS | 25.0% |
| ! | TCTCATTATGTTAATCTCAT+GGG | - | chr2_4:13201351-13201370 | Msa0316280:intron | 25.0% |
| ! | AGAAATCCAAGTTAACTTTA+GGG | + | chr2_4:13201396-13201415 | None:intergenic | 25.0% |
| !! | GATTTTTCTTACAGGAAAAA+GGG | + | chr2_4:13201425-13201444 | None:intergenic | 25.0% |
| !! | TGATTTTTCTTACAGGAAAA+AGG | + | chr2_4:13201426-13201445 | None:intergenic | 25.0% |
| ! | CACCTAAGAAATTTCAAAAT+TGG | - | chr2_4:13201786-13201805 | Msa0316280:intron | 25.0% |
| !!! | ACCCAATTTTGAAATTTCTT+AGG | + | chr2_4:13201791-13201810 | None:intergenic | 25.0% |
| !! | TACAATATCAATGCTCTAAA+TGG | - | chr2_4:13202085-13202104 | Msa0316280:intron | 25.0% |
| !! | AATTCTTGTTTCAGGATTTA+TGG | - | chr2_4:13202111-13202130 | Msa0316280:intron | 25.0% |
| !! | ATTCTTGTTTCAGGATTTAT+GGG | - | chr2_4:13202112-13202131 | Msa0316280:intron | 25.0% |
| ! | AGGAATATATTCTCAAAGAA+AGG | - | chr2_4:13202166-13202185 | Msa0316280:intron | 25.0% |
| ! | TTTCCTATGCTAAATGTTAA+GGG | + | chr2_4:13202562-13202581 | None:intergenic | 25.0% |
| ! | ATTTCCTATGCTAAATGTTA+AGG | + | chr2_4:13202563-13202582 | None:intergenic | 25.0% |
| ! | GATCAAGTACATAATTTAGT+AGG | + | chr2_4:13202717-13202736 | None:intergenic | 25.0% |
| ! | TAGATTCAACCAAATTATGT+GGG | + | chr2_4:13203189-13203208 | None:intergenic | 25.0% |
| ! | ATAGATTCAACCAAATTATG+TGG | + | chr2_4:13203190-13203209 | None:intergenic | 25.0% |
| ! | GAATTCATAAAACATTATGC+TGG | + | chr2_4:13203301-13203320 | None:intergenic | 25.0% |
| ! | ATTTCCTTTACTTAGTAGAA+AGG | - | chr2_4:13203447-13203466 | Msa0316280:intron | 25.0% |
| ! | AAAACCTTTCTACTAAGTAA+AGG | + | chr2_4:13203454-13203473 | None:intergenic | 25.0% |
| !!! | AAAATGACAGATTTTTCAAG+AGG | + | chr2_4:13203501-13203520 | None:intergenic | 25.0% |
| ! | TCAAATATGTGATTATGAGA+TGG | + | chr2_4:13203530-13203549 | None:intergenic | 25.0% |
| ! | GACTATACATTGTTGTAAAT+TGG | + | chr2_4:13204077-13204096 | None:intergenic | 25.0% |
| ! | GTCTAATAAATCCATACTTA+AGG | + | chr2_4:13204139-13204158 | None:intergenic | 25.0% |
| ! | ATGGATTTATTAGACTATGA+AGG | - | chr2_4:13204144-13204163 | Msa0316280:intron | 25.0% |
| !! | CATTAACTTGATTAGTCAAT+GGG | - | chr2_4:13204358-13204377 | Msa0316280:intron | 25.0% |
| !!! | ACTTGATAATGACATTTATC+GGG | - | chr2_4:13204509-13204528 | Msa0316280:intron | 25.0% |
| ! | AAGCTGAATAAGTCATTAAA+TGG | - | chr2_4:13204576-13204595 | Msa0316280:intron | 25.0% |
| ! | CATAAACAAATAAAGGATCA+CGG | + | chr2_4:13204896-13204915 | None:intergenic | 25.0% |
| ! | TACAGTTGAAAAGCAAAAAT+GGG | + | chr2_4:13205001-13205020 | None:intergenic | 25.0% |
| ! | ATACAGTTGAAAAGCAAAAA+TGG | + | chr2_4:13205002-13205021 | None:intergenic | 25.0% |
| ! | TACTATAAGAAAATTGCACA+AGG | - | chr2_4:13205039-13205058 | Msa0316280:CDS | 25.0% |
| ! | TTGATTATACTTCTCTCTAT+TGG | - | chr2_4:13205426-13205445 | Msa0316280:intron | 25.0% |
| !!! | AAAACATAATTTTGCCGATT+TGG | - | chr2_4:13205496-13205515 | Msa0316280:CDS | 25.0% |
| !!! | TTTTAAAAACCGAACCAAAT+CGG | + | chr2_4:13205513-13205532 | None:intergenic | 25.0% |
| !! | TCTTTCACATTCTTTCTTTT+GGG | + | chr2_4:13205624-13205643 | None:intergenic | 25.0% |
| ! | TCATGATGTTAAAATCTCAT+GGG | - | chr2_4:13205853-13205872 | Msa0316280:CDS | 25.0% |
| !! | AGAAATCCAAGTTAACTTTT+GGG | + | chr2_4:13205898-13205917 | None:intergenic | 25.0% |
| AGAATTGAAAATTGAGACCT+TGG | + | chr2_4:13200998-13201017 | None:intergenic | 30.0% | |
| ! | TGTTCAACATTTTGAATGGT+TGG | + | chr2_4:13201022-13201041 | None:intergenic | 30.0% |
| ! | TAGCAATGCAAAATTTTGAG+TGG | + | chr2_4:13201095-13201114 | None:intergenic | 30.0% |
| ! | TCTGTCACATTCTTTCTTTT+GGG | + | chr2_4:13201124-13201143 | None:intergenic | 30.0% |
| ! | TTCTGTCACATTCTTTCTTT+TGG | + | chr2_4:13201125-13201144 | None:intergenic | 30.0% |
| AGTTCAATGTTAATCTCTAG+TGG | + | chr2_4:13201178-13201197 | None:intergenic | 30.0% | |
| CTCTCATTATGTTAATCTCA+TGG | - | chr2_4:13201350-13201369 | Msa0316280:intron | 30.0% | |
| GAAATCCAAGTTAACTTTAG+GGG | + | chr2_4:13201395-13201414 | None:intergenic | 30.0% | |
| CAGAAATCCAAGTTAACTTT+AGG | + | chr2_4:13201397-13201416 | None:intergenic | 30.0% | |
| ! | CTAAAGTTAACTTGGATTTC+TGG | - | chr2_4:13201395-13201414 | Msa0316280:intron | 30.0% |
| TTGAATGTAACTACATGCAT+CGG | + | chr2_4:13201521-13201540 | None:intergenic | 30.0% | |
| AATTTCAAAATTGGGTATGC+AGG | - | chr2_4:13201795-13201814 | Msa0316280:intron | 30.0% | |
| GAACTCAGTTTCAATATGAT+TGG | - | chr2_4:13202021-13202040 | Msa0316280:intron | 30.0% | |
| ! | AATGGATCAATTCTTGTTTC+AGG | - | chr2_4:13202103-13202122 | Msa0316280:intron | 30.0% |
| CAAATTTGGCATTTGTATTC+AGG | - | chr2_4:13202146-13202165 | Msa0316280:intron | 30.0% | |
| TTCTCAAAGAAAGGAATGAA+TGG | - | chr2_4:13202175-13202194 | Msa0316280:intron | 30.0% | |
| TCTCAAAGAAAGGAATGAAT+GGG | - | chr2_4:13202176-13202195 | Msa0316280:intron | 30.0% | |
| TATGCTTACCAGACAAAATT+CGG | + | chr2_4:13202337-13202356 | None:intergenic | 30.0% | |
| TGAGATTGAAACATTATGTG+AGG | - | chr2_4:13202798-13202817 | Msa0316280:intron | 30.0% | |
| GAGATTGAAACATTATGTGA+GGG | - | chr2_4:13202799-13202818 | Msa0316280:intron | 30.0% | |
| !!! | TGTTGATTTTTTGAAAGAGC+AGG | - | chr2_4:13202845-13202864 | Msa0316280:intron | 30.0% |
| GAGTGTATTATGTTGTCAAT+AGG | - | chr2_4:13203005-13203024 | Msa0316280:intron | 30.0% | |
| TGTTAGAGTGTAATGAAGAA+TGG | - | chr2_4:13203249-13203268 | Msa0316280:intron | 30.0% | |
| ! | AACAAATTCATGTCAAGTTG+AGG | + | chr2_4:13203323-13203342 | None:intergenic | 30.0% |
| AATGTCTTACACCATAAGTA+GGG | + | chr2_4:13203609-13203628 | None:intergenic | 30.0% | |
| AAATGTCTTACACCATAAGT+AGG | + | chr2_4:13203610-13203629 | None:intergenic | 30.0% | |
| TCTTCTCAAGCATAAATTAG+AGG | - | chr2_4:13203676-13203695 | Msa0316280:intron | 30.0% | |
| CATAAACTTCTGCAGAAATA+GGG | + | chr2_4:13203771-13203790 | None:intergenic | 30.0% | |
| GGTTTAATCACAAAGAGATT+AGG | + | chr2_4:13204099-13204118 | None:intergenic | 30.0% | |
| ! | TTCAAAATTTGAAACGAGAG+TGG | + | chr2_4:13204202-13204221 | None:intergenic | 30.0% |
| AATGCTTAACCTCATACATT+TGG | + | chr2_4:13204342-13204361 | None:intergenic | 30.0% | |
| ! | GCATTAACTTGATTAGTCAA+TGG | - | chr2_4:13204357-13204376 | Msa0316280:intron | 30.0% |
| ! | ATACTATGCTAGTTAGTCTA+AGG | + | chr2_4:13204602-13204621 | None:intergenic | 30.0% |
| AAGAAAGAAGAGAGAGAAAA+TGG | - | chr2_4:13204776-13204795 | Msa0316280:intron | 30.0% | |
| !!! | AGTACCAAGAATTTTTGGTT+TGG | + | chr2_4:13204849-13204868 | None:intergenic | 30.0% |
| AAACCAAAAATTCTTGGTAC+TGG | - | chr2_4:13204848-13204867 | Msa0316280:intron | 30.0% | |
| ACACTTACATGTTGAATCTT+GGG | + | chr2_4:13204948-13204967 | None:intergenic | 30.0% | |
| AACACTTACATGTTGAATCT+TGG | + | chr2_4:13204949-13204968 | None:intergenic | 30.0% | |
| AAAATTTGTAGGTACAACAG+TGG | + | chr2_4:13205195-13205214 | None:intergenic | 30.0% | |
| ! | AGCCAGGAATAAATTTTTGA+GGG | + | chr2_4:13205267-13205286 | None:intergenic | 30.0% |
| CTGAGACAAATTCTTATTGA+AGG | - | chr2_4:13205306-13205325 | Msa0316280:intron | 30.0% | |
| !!! | GTTGACCATTTCTTTTTTCT+TGG | - | chr2_4:13205394-13205413 | Msa0316280:intron | 30.0% |
| AGGAACCAAGAAAAAAGAAA+TGG | + | chr2_4:13205402-13205421 | None:intergenic | 30.0% | |
| ! | AGAGAAGTATAATCAAAGAG+AGG | + | chr2_4:13205422-13205441 | None:intergenic | 30.0% |
| !!! | ATAATTTTGCCGATTTGGTT+CGG | - | chr2_4:13205501-13205520 | Msa0316280:CDS | 30.0% |
| !!! | TTGGTTCGGTTTTTAAAAAG+TGG | - | chr2_4:13205515-13205534 | Msa0316280:CDS | 30.0% |
| ! | GTTTCTTTGAAGAGAGTAAA+GGG | + | chr2_4:13205557-13205576 | None:intergenic | 30.0% |
| TCATTAAATGAAAGGTAGAG+AGG | + | chr2_4:13205579-13205598 | None:intergenic | 30.0% | |
| ! | CTCTTTCACATTCTTTCTTT+TGG | + | chr2_4:13205625-13205644 | None:intergenic | 30.0% |
| AGTTCAATGTTAATCTCTAG+TGG | + | chr2_4:13201178-13201197 | None:intergenic | 30.0% | |
| ! | TTGGATTGTATTTTGCTACT+TGG | - | chr2_4:13205730-13205749 | Msa0316280:CDS | 30.0% |
| !! | ATTGTATTTTGCTACTTGGT+GGG | - | chr2_4:13205734-13205753 | Msa0316280:CDS | 30.0% |
| CTCATGATGTTAAAATCTCA+TGG | - | chr2_4:13205852-13205871 | Msa0316280:CDS | 30.0% | |
| ! | GAAATCCAAGTTAACTTTTG+GGG | + | chr2_4:13205897-13205916 | None:intergenic | 30.0% |
| ! | CAGAAATCCAAGTTAACTTT+TGG | + | chr2_4:13201397-13201416 | None:intergenic | 30.0% |
| ! | CAAAAGTTAACTTGGATTTC+TGG | - | chr2_4:13205897-13205916 | Msa0316280:CDS | 30.0% |
| TGAAAGATAGAGAGGTTTCT+TGG | + | chr2_4:13201071-13201090 | None:intergenic | 35.0% | |
| AACATTGAACTTCCTAGTGA+AGG | - | chr2_4:13201187-13201206 | Msa0316280:CDS | 35.0% | |
| !! | TTGGGTTGTATTTTGCTACT+TGG | - | chr2_4:13201230-13201249 | Msa0316280:CDS | 35.0% |
| !! | GTTGTATTTTGCTACTTGGT+GGG | - | chr2_4:13201234-13201253 | Msa0316280:CDS | 35.0% |
| ! | AATGGGGTGATTTTTCTTAC+AGG | + | chr2_4:13201433-13201452 | None:intergenic | 35.0% |
| !!! | ACTTTTTCAACCTGAAGTGT+CGG | + | chr2_4:13201613-13201632 | None:intergenic | 35.0% |
| GTAACTACATTTGTCAGTGT+CGG | + | chr2_4:13201645-13201664 | None:intergenic | 35.0% | |
| GTGAGCACTAAAAATAACAC+CGG | + | chr2_4:13201769-13201788 | None:intergenic | 35.0% | |
| ! | AGTGAATGAAACTGCTACTT+TGG | + | chr2_4:13201869-13201888 | None:intergenic | 35.0% |
| CTAGTATCAAGATTCATGCT+TGG | - | chr2_4:13201925-13201944 | Msa0316280:intron | 35.0% | |
| CAATTATTGGCAACAATGAG+AGG | + | chr2_4:13201975-13201994 | None:intergenic | 35.0% | |
| CTCTCATTGTTGCCAATAAT+TGG | - | chr2_4:13201973-13201992 | Msa0316280:intron | 35.0% | |
| TCATTGTTGCCAATAATTGG+TGG | - | chr2_4:13201976-13201995 | Msa0316280:intron | 35.0% | |
| GGGAGCTATGATATCAAATT+TGG | - | chr2_4:13202132-13202151 | Msa0316280:intron | 35.0% | |
| ! | AAATTGGTCCGAATTTTGTC+TGG | - | chr2_4:13202326-13202345 | Msa0316280:intron | 35.0% |
| ! | TTTTTATGTTTACAGGTGGG+TGG | - | chr2_4:13202471-13202490 | Msa0316280:intron | 35.0% |
| TCTCCCTTAACATTTAGCAT+AGG | - | chr2_4:13202556-13202575 | Msa0316280:intron | 35.0% | |
| TGGTGTGTGAAAGATAATGA+TGG | + | chr2_4:13202617-13202636 | None:intergenic | 35.0% | |
| ATTCACCTGTGAATAGATGA+AGG | + | chr2_4:13202686-13202705 | None:intergenic | 35.0% | |
| GCTAAACAGAATTAAGGTTG+CGG | - | chr2_4:13202867-13202886 | Msa0316280:intron | 35.0% | |
| ! | TGAAGCTTTTATCGAAAGCA+TGG | - | chr2_4:13202893-13202912 | Msa0316280:intron | 35.0% |
| !! | GAAGCTTTTATCGAAAGCAT+GGG | - | chr2_4:13202894-13202913 | Msa0316280:intron | 35.0% |
| ! | TCTAAGGGTATGCTATGATT+AGG | - | chr2_4:13202939-13202958 | Msa0316280:intron | 35.0% |
| !! | TTTCTTTGAAGCCATCGTAA+TGG | - | chr2_4:13203031-13203050 | Msa0316280:intron | 35.0% |
| GAGATTACAAACCATTACGA+TGG | + | chr2_4:13203045-13203064 | None:intergenic | 35.0% | |
| ATGGGTCCGTAATATGTATA+TGG | - | chr2_4:13203162-13203181 | Msa0316280:intron | 35.0% | |
| GTGGGTCCATATACATATTA+CGG | + | chr2_4:13203171-13203190 | None:intergenic | 35.0% | |
| GTATATGGACCCACATAATT+TGG | - | chr2_4:13203177-13203196 | Msa0316280:intron | 35.0% | |
| TCAAGAGGACAAATTTGACA+TGG | + | chr2_4:13203486-13203505 | None:intergenic | 35.0% | |
| TACATTGTGACATTTGCGAT+TGG | - | chr2_4:13203570-13203589 | Msa0316280:intron | 35.0% | |
| ACATTGTGACATTTGCGATT+GGG | - | chr2_4:13203571-13203590 | Msa0316280:intron | 35.0% | |
| GCATAAACTTCTGCAGAAAT+AGG | + | chr2_4:13203772-13203791 | None:intergenic | 35.0% | |
| ATCACTAACTGTGAAAGTGA+AGG | + | chr2_4:13203799-13203818 | None:intergenic | 35.0% | |
| TTCACTTTCACAGTTAGTGA+TGG | - | chr2_4:13203798-13203817 | Msa0316280:intron | 35.0% | |
| !! | AAGAATGAGTGTTGAACTCA+AGG | - | chr2_4:13203870-13203889 | Msa0316280:intron | 35.0% |
| TGTCAGCGATGAATATAACT+TGG | - | chr2_4:13204008-13204027 | Msa0316280:intron | 35.0% | |
| AAGTCACGTTTGATTGCAAA+AGG | - | chr2_4:13204388-13204407 | Msa0316280:intron | 35.0% | |
| ATTTATCGGGATCTACCTTT+GGG | - | chr2_4:13204522-13204541 | Msa0316280:intron | 35.0% | |
| TAACTAGCATAGTATGCTAG+TGG | - | chr2_4:13204607-13204626 | Msa0316280:intron | 35.0% | |
| ! | GATTACTGTATTTTCACCCT+TGG | - | chr2_4:13204664-13204683 | Msa0316280:CDS | 35.0% |
| ! | TGTATTTTCACCCTTGGTTA+TGG | - | chr2_4:13204670-13204689 | Msa0316280:CDS | 35.0% |
| GTGACCAAACCAAAAATTCT+TGG | - | chr2_4:13204842-13204861 | Msa0316280:intron | 35.0% | |
| CACTTACATGTTGAATCTTG+GGG | + | chr2_4:13204947-13204966 | None:intergenic | 35.0% | |
| GGTTAGTGAAGTAAAATCCA+GGG | - | chr2_4:13205141-13205160 | Msa0316280:intron | 35.0% | |
| ACAACAGTGGTACATAGTAT+TGG | + | chr2_4:13205182-13205201 | None:intergenic | 35.0% | |
| CTCCCTCAAAAATTTATTCC+TGG | - | chr2_4:13205262-13205281 | Msa0316280:intron | 35.0% | |
| ! | GAGCCAGGAATAAATTTTTG+AGG | + | chr2_4:13205268-13205287 | None:intergenic | 35.0% |
| GAAGGAAGAGTTGAATTTGT+TGG | - | chr2_4:13205324-13205343 | Msa0316280:intron | 35.0% | |
| ! | CTCTTTGACTGTTTCTTCTT+TGG | - | chr2_4:13205372-13205391 | Msa0316280:intron | 35.0% |
| TTAAAAAGTGGTCCGAAATC+CGG | - | chr2_4:13205527-13205546 | Msa0316280:CDS | 35.0% | |
| ! | GGTTTCTTTGAAGAGAGTAA+AGG | + | chr2_4:13205558-13205577 | None:intergenic | 35.0% |
| !!! | TTTTGAGCTGCTTTTTCACT+AGG | + | chr2_4:13205702-13205721 | None:intergenic | 35.0% |
| !! | GATTGTATTTTGCTACTTGG+TGG | - | chr2_4:13205733-13205752 | Msa0316280:CDS | 35.0% |
| ! | TTAAAATCTCATGGGCTACT+AGG | - | chr2_4:13205861-13205880 | Msa0316280:CDS | 35.0% |
| ! | TAAAATCTCATGGGCTACTA+GGG | - | chr2_4:13205862-13205881 | Msa0316280:CDS | 35.0% |
| CAAGTACATCATCACTTCCA+AGG | - | chr2_4:13200978-13200997 | Msa0316280:CDS | 40.0% | |
| TGAGTGGATGAAAGATAGAG+AGG | + | chr2_4:13201079-13201098 | None:intergenic | 40.0% | |
| GACAGAATGTCAAGCTTATG+AGG | - | chr2_4:13201138-13201157 | Msa0316280:CDS | 40.0% | |
| CTTATGAGGCTGATAGATCA+AGG | - | chr2_4:13201152-13201171 | Msa0316280:CDS | 40.0% | |
| CAGCTCAAAAGCTCAAGATT+GGG | - | chr2_4:13201212-13201231 | Msa0316280:CDS | 40.0% | |
| !! | GGTTGTATTTTGCTACTTGG+TGG | - | chr2_4:13201233-13201252 | Msa0316280:CDS | 40.0% |
| ! | TGAATGCTTTTCCTTACCCT+TGG | - | chr2_4:13201296-13201315 | Msa0316280:intron | 40.0% |
| ATAAAGTGGAAGTGAGCCAA+GGG | + | chr2_4:13201315-13201334 | None:intergenic | 40.0% | |
| ! | TGTTAATCTCATGGGCTACT+AGG | - | chr2_4:13201359-13201378 | Msa0316280:intron | 40.0% |
| ! | GTTAATCTCATGGGCTACTA+GGG | - | chr2_4:13201360-13201379 | Msa0316280:intron | 40.0% |
| ! | GTTTTCACTTTCACTAGCAC+TGG | - | chr2_4:13201470-13201489 | Msa0316280:intron | 40.0% |
| GTACTGTTGAAAAGTGGCAT+CGG | + | chr2_4:13201591-13201610 | None:intergenic | 40.0% | |
| CTATGTGTCAGTATAGTGTC+TGG | - | chr2_4:13201701-13201720 | Msa0316280:intron | 40.0% | |
| GACACATTGATATCAGTCAC+TGG | + | chr2_4:13201736-13201755 | None:intergenic | 40.0% | |
| CAATGTGTCAGTGTAATGTC+CGG | - | chr2_4:13201747-13201766 | Msa0316280:intron | 40.0% | |
| TTCACTCACATCATCAAGAG+TGG | - | chr2_4:13201883-13201902 | Msa0316280:intron | 40.0% | |
| ATGAATGGGATGAGTGTTAG+TGG | - | chr2_4:13202190-13202209 | Msa0316280:intron | 40.0% | |
| !!! | CACACCTTTTGCTATTGTTG+TGG | - | chr2_4:13202258-13202277 | Msa0316280:intron | 40.0% |
| !!! | ACCTTTTGCTATTGTTGTGG+AGG | - | chr2_4:13202261-13202280 | Msa0316280:intron | 40.0% |
| !!! | CCTTTTGCTATTGTTGTGGA+GGG | - | chr2_4:13202262-13202281 | Msa0316280:intron | 40.0% |
| CAAACAGCTGTGTCTCAAAT+TGG | - | chr2_4:13202310-13202329 | Msa0316280:intron | 40.0% | |
| GAGCAGGCTAAACAGAATTA+AGG | - | chr2_4:13202861-13202880 | Msa0316280:intron | 40.0% | |
| ! | AAGGGTATGCTATGATTAGG+AGG | - | chr2_4:13202942-13202961 | Msa0316280:intron | 40.0% |
| ! | ACCATAAGTAGGGTGTCATA+AGG | + | chr2_4:13203599-13203618 | None:intergenic | 40.0% |
| GAGGCTCATCAAGCTATTAT+TGG | - | chr2_4:13203695-13203714 | Msa0316280:intron | 40.0% | |
| AAGGTTCCTCCAAATGTATG+AGG | - | chr2_4:13204330-13204349 | Msa0316280:CDS | 40.0% | |
| GCTTAACCTCATACATTTGG+AGG | + | chr2_4:13204339-13204358 | None:intergenic | 40.0% | |
| !! | AGAGTATTGAGCTTGGATAC+AGG | + | chr2_4:13204433-13204452 | None:intergenic | 40.0% |
| !! | ACTCTTGAGAGTATTGAGCT+TGG | + | chr2_4:13204440-13204459 | None:intergenic | 40.0% |
| CATTTATCGGGATCTACCTT+TGG | - | chr2_4:13204521-13204540 | Msa0316280:intron | 40.0% | |
| !!! | ACCTTTGGGTTTTAAACCTG+AGG | - | chr2_4:13204536-13204555 | Msa0316280:intron | 40.0% |
| ! | ACCACACAAGATTTTCTCCA+CGG | + | chr2_4:13204701-13204720 | None:intergenic | 40.0% |
| ! | GGACCAGTACCAAGAATTTT+TGG | + | chr2_4:13204854-13204873 | None:intergenic | 40.0% |
| AAGCAAAAATGGGCACAACA+AGG | + | chr2_4:13204991-13205010 | None:intergenic | 40.0% | |
| ! | GGATTTTACTTCACTAACCC+TGG | + | chr2_4:13205140-13205159 | None:intergenic | 40.0% |
| ! | GGGTTAGTGAAGTAAAATCC+AGG | - | chr2_4:13205140-13205159 | Msa0316280:intron | 40.0% |
| ! | GGATTTTACTTCACTAACCC+TGG | + | chr2_4:13205140-13205159 | None:intergenic | 40.0% |
| TCAGACATTTGTGAGCAGTA+CGG | + | chr2_4:13205290-13205309 | None:intergenic | 40.0% | |
| !! | GAATTTGTTGGCTGCTTCTA+TGG | - | chr2_4:13205336-13205355 | Msa0316280:intron | 40.0% |
| !! | GAAAGAGTGTCAAGCTTATG+AGG | - | chr2_4:13205638-13205657 | Msa0316280:CDS | 40.0% |
| CTTATGAGGCTGATAGATCA+AGG | - | chr2_4:13201152-13201171 | Msa0316280:CDS | 40.0% | |
| GCAGCTCAAAAGCTTAAGAT+TGG | - | chr2_4:13205711-13205730 | Msa0316280:CDS | 40.0% | |
| ! | TGAATGCTTTTCCTTACCCT+TGG | - | chr2_4:13201296-13201315 | Msa0316280:intron | 40.0% |
| ACAAAGTGGAAGTAAGCCAA+GGG | + | chr2_4:13205815-13205834 | None:intergenic | 40.0% | |
| ! | TTTTGAGCTGCTCCTTCACT+AGG | + | chr2_4:13201202-13201221 | None:intergenic | 45.0% |
| GCAGCTCAAAAGCTCAAGAT+TGG | - | chr2_4:13201211-13201230 | Msa0316280:CDS | 45.0% | |
| GATAAAGTGGAAGTGAGCCA+AGG | + | chr2_4:13201316-13201335 | None:intergenic | 45.0% | |
| TCCACTTTATCCTTAGCTGC+TGG | - | chr2_4:13201325-13201344 | Msa0316280:intron | 45.0% | |
| ACCAGCAGCTAAGGATAAAG+TGG | + | chr2_4:13201329-13201348 | None:intergenic | 45.0% | |
| AATGAGAGAACCAGCAGCTA+AGG | + | chr2_4:13201338-13201357 | None:intergenic | 45.0% | |
| TGAGGCCCCTAAAGTTAACT+TGG | - | chr2_4:13201387-13201406 | Msa0316280:intron | 45.0% | |
| ! | GTGTCGGTACTGTTGAAAAG+TGG | + | chr2_4:13201597-13201616 | None:intergenic | 45.0% |
| !! | TTCAACAGTACCGACACTTC+AGG | - | chr2_4:13201600-13201619 | Msa0316280:intron | 45.0% |
| TAGCTGTGGCACACACAATT+GGG | - | chr2_4:13201818-13201837 | Msa0316280:intron | 45.0% | |
| CATCATCAAGAGTGGAGAAC+CGG | - | chr2_4:13201891-13201910 | Msa0316280:intron | 45.0% | |
| GATACTAGCACACTGAAAGC+CGG | + | chr2_4:13201913-13201932 | None:intergenic | 45.0% | |
| GGCAACAATGAGAGGTAAAC+TGG | + | chr2_4:13201967-13201986 | None:intergenic | 45.0% | |
| AGTGCGCAACCACCAATTAT+TGG | + | chr2_4:13201988-13202007 | None:intergenic | 45.0% | |
| CCCTCCACAACAATAGCAAA+AGG | + | chr2_4:13202265-13202284 | None:intergenic | 45.0% | |
| TTGTGGAGGGTCCTAAAGTT+TGG | - | chr2_4:13202275-13202294 | Msa0316280:intron | 45.0% | |
| CAACCAGCAGTCCAAACTTT+AGG | + | chr2_4:13202289-13202308 | None:intergenic | 45.0% | |
| CTAAAGTTTGGACTGCTGGT+TGG | - | chr2_4:13202287-13202306 | Msa0316280:intron | 45.0% | |
| !! | AGAGCATTGATGGGTTGAAG+TGG | + | chr2_4:13202637-13202656 | None:intergenic | 45.0% |
| CTTCAACCCATCAATGCTCT+TGG | - | chr2_4:13202637-13202656 | Msa0316280:intron | 45.0% | |
| GGAGCAGCTATTGCAATTCT+TGG | - | chr2_4:13202658-13202677 | Msa0316280:intron | 45.0% | |
| TGGCACCTTCATCTATTCAC+AGG | - | chr2_4:13202678-13202697 | Msa0316280:intron | 45.0% | |
| GCCTTATGACACCCTACTTA+TGG | - | chr2_4:13203595-13203614 | Msa0316280:intron | 45.0% | |
| CAGAAATAGGGTCAGAGCTA+GGG | + | chr2_4:13203759-13203778 | None:intergenic | 45.0% | |
| AAGGGCTATCGCAAGGTTAA+AGG | + | chr2_4:13204120-13204139 | None:intergenic | 45.0% | |
| CATACTTAAGGGCTATCGCA+AGG | + | chr2_4:13204127-13204146 | None:intergenic | 45.0% | |
| CTTGCGATAGCCCTTAAGTA+TGG | - | chr2_4:13204125-13204144 | Msa0316280:intron | 45.0% | |
| ! | GCCTCAGGTTTAAAACCCAA+AGG | + | chr2_4:13204540-13204559 | None:intergenic | 45.0% |
| !!! | GGTTTTAAACCTGAGGCACA+TGG | - | chr2_4:13204543-13204562 | Msa0316280:intron | 45.0% |
| TCCGTGGAGAAAATCTTGTG+TGG | - | chr2_4:13204697-13204716 | Msa0316280:CDS | 45.0% | |
| GAGAAAATCTTGTGTGGTCC+TGG | - | chr2_4:13204703-13204722 | Msa0316280:CDS | 45.0% | |
| GAGAGAAGAGAAGAGAGAGA+AGG | - | chr2_4:13204803-13204822 | Msa0316280:intron | 45.0% | |
| !! | ACGTAAGTGTTGAACGAACC+AGG | - | chr2_4:13205103-13205122 | Msa0316280:intron | 45.0% |
| !! | AACCAGGTAAGTGTTGAACC+AGG | - | chr2_4:13205119-13205138 | Msa0316280:intron | 45.0% |
| !! | ACCAGGTAAGTGTTGAACCA+GGG | - | chr2_4:13205120-13205139 | Msa0316280:intron | 45.0% |
| GACAAAGTGGAAGTAAGCCA+AGG | + | chr2_4:13205816-13205835 | None:intergenic | 45.0% | |
| TGAGGCCCCAAAAGTTAACT+TGG | - | chr2_4:13205889-13205908 | Msa0316280:CDS | 45.0% | |
| ATTGGGTATGCAGGTAGCTG+TGG | - | chr2_4:13201804-13201823 | Msa0316280:intron | 50.0% | |
| GTAGCTGTGGCACACACAAT+TGG | - | chr2_4:13201817-13201836 | Msa0316280:intron | 50.0% | |
| GGTCCTAAAGTTTGGACTGC+TGG | - | chr2_4:13202283-13202302 | Msa0316280:intron | 50.0% | |
| !! | GCTGCTCCAAGAGCATTGAT+GGG | + | chr2_4:13202646-13202665 | None:intergenic | 50.0% |
| !! | AGCTGCTCCAAGAGCATTGA+TGG | + | chr2_4:13202647-13202666 | None:intergenic | 50.0% |
| AGCATGGGAACGATGACTCA+CGG | - | chr2_4:13202909-13202928 | Msa0316280:intron | 50.0% | |
| ! | ACTCACGGTTGGAGCTCTAA+GGG | - | chr2_4:13202924-13202943 | Msa0316280:intron | 50.0% |
| GCAGAAATAGGGTCAGAGCT+AGG | + | chr2_4:13203760-13203779 | None:intergenic | 50.0% | |
| CATACTAAGCCATGTGCCTC+AGG | + | chr2_4:13204555-13204574 | None:intergenic | 50.0% | |
| !! | CACGGAAGCACCATAACCAA+GGG | + | chr2_4:13204683-13204702 | None:intergenic | 50.0% |
| AAAGACCACTTGTGTGGACC+AGG | + | chr2_4:13204724-13204743 | None:intergenic | 50.0% | |
| TGGTCCACACAAGTGGTCTT+TGG | - | chr2_4:13204723-13204742 | Msa0316280:CDS | 50.0% | |
| GTGACCAAAGACCACTTGTG+TGG | + | chr2_4:13204730-13204749 | None:intergenic | 50.0% | |
| GGAAGCGAGAAACACTTGTG+TGG | + | chr2_4:13204875-13204894 | None:intergenic | 50.0% | |
| ACCCTGGTTCAACACTTACC+TGG | + | chr2_4:13205124-13205143 | None:intergenic | 50.0% | |
| GTAAAGGGAGAGCCGGATTT+CGG | + | chr2_4:13205542-13205561 | None:intergenic | 50.0% | |
| GAAGAGAGTAAAGGGAGAGC+CGG | + | chr2_4:13205549-13205568 | None:intergenic | 50.0% | |
| GTGGAAGTAAGCCAAGGGTA+AGG | + | chr2_4:13205810-13205829 | None:intergenic | 50.0% | |
| TCCACTTTGTCCTTAGCTGC+TGG | - | chr2_4:13205825-13205844 | Msa0316280:CDS | 50.0% | |
| ACCAGCAGCTAAGGACAAAG+TGG | + | chr2_4:13205829-13205848 | None:intergenic | 50.0% | |
| CATGAGAGAACCAGCAGCTA+AGG | + | chr2_4:13205838-13205857 | None:intergenic | 50.0% | |
| GTGGAAGTGAGCCAAGGGTA+AGG | + | chr2_4:13201310-13201329 | None:intergenic | 55.0% | |
| ! | ATGGGCTACTAGGGTTGCTG+AGG | - | chr2_4:13201369-13201388 | Msa0316280:intron | 55.0% |
| TGGGAACGATGACTCACGGT+TGG | - | chr2_4:13202913-13202932 | Msa0316280:intron | 55.0% | |
| GACTCACGGTTGGAGCTCTA+AGG | - | chr2_4:13202923-13202942 | Msa0316280:intron | 55.0% | |
| !! | CCACGGAAGCACCATAACCA+AGG | + | chr2_4:13204684-13204703 | None:intergenic | 55.0% |
| CCTTGGTTATGGTGCTTCCG+TGG | - | chr2_4:13204681-13204700 | Msa0316280:CDS | 55.0% | |
| TTTGTGAGCAGTACGGAGCC+AGG | + | chr2_4:13205283-13205302 | None:intergenic | 55.0% | |
| ! | ATGGGCTACTAGGGTTGCTG+AGG | - | chr2_4:13201369-13201388 | Msa0316280:intron | 55.0% |
| !! | GGGAATGCAGGAAGTGCTGC+AGG | + | chr2_4:13203739-13203758 | None:intergenic | 60.0% |
| GGGTCAGAGCTAGGGAATGC+AGG | + | chr2_4:13203751-13203770 | None:intergenic | 60.0% | |
| GTGGTCCTGGTCCACACAAG+TGG | - | chr2_4:13204716-13204735 | Msa0316280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 13200956 | 13205938 | 13200956 | ID=Msa0316280;Name=Msa0316280 |
| chr2_4 | mRNA | 13200956 | 13205938 | 13200956 | ID=Msa0316280-mRNA-1;Parent=Msa0316280;Name=Msa0316280-mRNA-1;_AED=0.26;_eAED=0.29;_QI=0|0.4|0.16|1|0.6|0.33|6|0|443 |
| chr2_4 | exon | 13205692 | 13205938 | 13205692 | ID=Msa0316280-mRNA-1:exon:5027;Parent=Msa0316280-mRNA-1 |
| chr2_4 | exon | 13205462 | 13205685 | 13205462 | ID=Msa0316280-mRNA-1:exon:5026;Parent=Msa0316280-mRNA-1 |
| chr2_4 | exon | 13204852 | 13205077 | 13204852 | ID=Msa0316280-mRNA-1:exon:5025;Parent=Msa0316280-mRNA-1 |
| chr2_4 | exon | 13204611 | 13204769 | 13204611 | ID=Msa0316280-mRNA-1:exon:5024;Parent=Msa0316280-mRNA-1 |
| chr2_4 | exon | 13204195 | 13204364 | 13204195 | ID=Msa0316280-mRNA-1:exon:5023;Parent=Msa0316280-mRNA-1 |
| chr2_4 | exon | 13200956 | 13201261 | 13200956 | ID=Msa0316280-mRNA-1:exon:5022;Parent=Msa0316280-mRNA-1 |
| chr2_4 | CDS | 13205692 | 13205938 | 13205692 | ID=Msa0316280-mRNA-1:cds;Parent=Msa0316280-mRNA-1 |
| chr2_4 | CDS | 13205462 | 13205685 | 13205462 | ID=Msa0316280-mRNA-1:cds;Parent=Msa0316280-mRNA-1 |
| chr2_4 | CDS | 13204852 | 13205077 | 13204852 | ID=Msa0316280-mRNA-1:cds;Parent=Msa0316280-mRNA-1 |
| chr2_4 | CDS | 13204611 | 13204769 | 13204611 | ID=Msa0316280-mRNA-1:cds;Parent=Msa0316280-mRNA-1 |
| chr2_4 | CDS | 13204195 | 13204364 | 13204195 | ID=Msa0316280-mRNA-1:cds;Parent=Msa0316280-mRNA-1 |
| chr2_4 | CDS | 13200956 | 13201261 | 13200956 | ID=Msa0316280-mRNA-1:cds;Parent=Msa0316280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
