Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686360 | XP_003606943.1 | 90.317 | 537 | 39 | 2 | 1 | 533 | 1 | 528 | 0.0 | 984 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686360 | sp|Q00081|GLGL1_SOLTU | 71.339 | 478 | 124 | 2 | 60 | 533 | 2 | 470 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686360 | G7JHD0 | 90.317 | 537 | 39 | 2 | 1 | 533 | 1 | 528 | 0.0 | 984 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0605750 | Msa0686360 | 0.980876 | 3.055174e-151 | -8.615850e-47 |
| Msa0646780 | Msa0686360 | 0.906627 | 1.212657e-80 | -8.615850e-47 |
| Msa0140760 | Msa0686360 | 0.841690 | 4.078455e-58 | -8.615850e-47 |
| Msa0238260 | Msa0686360 | 0.806098 | 9.699941e-50 | -8.615850e-47 |
| Msa0385920 | Msa0686360 | 0.843579 | 1.284784e-58 | -8.615850e-47 |
| Msa0479740 | Msa0686360 | 0.875401 | 3.172502e-68 | -8.615850e-47 |
| Msa0316270 | Msa0686360 | 0.811517 | 6.730919e-51 | -8.615850e-47 |
| Msa0316280 | Msa0686360 | 0.834253 | 3.335458e-56 | -8.615850e-47 |
| Msa0523360 | Msa0686360 | 0.864723 | 9.902166e-65 | -8.615850e-47 |
| Msa0550330 | Msa0686360 | 0.910598 | 1.565428e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686360 | MtrunA17_Chr4g0035171 | 90.317 | 537 | 39 | 2 | 1 | 533 | 1 | 528 | 0.0 | 984 |
| Msa0686360 | MtrunA17_Chr3g0141761 | 63.353 | 513 | 164 | 6 | 29 | 533 | 34 | 530 | 0.0 | 636 |
| Msa0686360 | MtrunA17_Chr4g0074531 | 61.915 | 449 | 157 | 4 | 90 | 533 | 82 | 521 | 0.0 | 589 |
| Msa0686360 | MtrunA17_Chr7g0271011 | 60.086 | 466 | 164 | 5 | 81 | 533 | 80 | 536 | 0.0 | 572 |
| Msa0686360 | MtrunA17_Chr3g0144741 | 65.826 | 357 | 99 | 4 | 1 | 353 | 1 | 338 | 7.20e-153 | 441 |
| Msa0686360 | MtrunA17_Chr5g0447341 | 48.037 | 433 | 204 | 8 | 108 | 533 | 97 | 515 | 1.43e-141 | 418 |
| Msa0686360 | MtrunA17_Chr3g0120471 | 48.499 | 433 | 199 | 9 | 108 | 533 | 96 | 511 | 1.11e-140 | 416 |
| Msa0686360 | MtrunA17_Chr0c30g0494071 | 45.511 | 479 | 142 | 10 | 90 | 533 | 21 | 415 | 5.46e-128 | 380 |
| Msa0686360 | MtrunA17_Chr3g0144731 | 87.261 | 157 | 20 | 0 | 377 | 533 | 5 | 161 | 6.78e-98 | 293 |
| Msa0686360 | MtrunA17_Chr4g0077071 | 41.250 | 80 | 46 | 1 | 366 | 444 | 2 | 81 | 1.97e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686360 | AT4G39210.2 | 65.177 | 537 | 166 | 6 | 2 | 533 | 1 | 521 | 0.0 | 714 |
| Msa0686360 | AT4G39210.1 | 65.177 | 537 | 166 | 6 | 2 | 533 | 1 | 521 | 0.0 | 714 |
| Msa0686360 | AT2G21590.2 | 66.277 | 513 | 154 | 5 | 26 | 533 | 25 | 523 | 0.0 | 674 |
| Msa0686360 | AT2G21590.3 | 66.277 | 513 | 154 | 5 | 26 | 533 | 25 | 523 | 0.0 | 674 |
| Msa0686360 | AT2G21590.5 | 66.277 | 513 | 154 | 5 | 26 | 533 | 25 | 523 | 0.0 | 674 |
| Msa0686360 | AT2G21590.4 | 66.277 | 513 | 154 | 5 | 26 | 533 | 25 | 523 | 0.0 | 674 |
| Msa0686360 | AT2G21590.7 | 66.277 | 513 | 154 | 5 | 26 | 533 | 25 | 523 | 0.0 | 674 |
| Msa0686360 | AT2G21590.1 | 66.277 | 513 | 154 | 5 | 26 | 533 | 25 | 523 | 0.0 | 674 |
| Msa0686360 | AT2G21590.6 | 66.277 | 513 | 154 | 5 | 26 | 533 | 25 | 523 | 0.0 | 674 |
| Msa0686360 | AT1G27680.1 | 65.417 | 480 | 149 | 5 | 59 | 533 | 51 | 518 | 0.0 | 645 |
| Msa0686360 | AT5G19220.1 | 61.607 | 448 | 159 | 3 | 90 | 533 | 84 | 522 | 0.0 | 589 |
| Msa0686360 | AT5G48300.1 | 48.961 | 433 | 200 | 8 | 108 | 533 | 102 | 520 | 1.02e-143 | 424 |
| Msa0686360 | AT1G05610.1 | 37.389 | 452 | 243 | 13 | 94 | 533 | 53 | 476 | 8.95e-91 | 286 |
| Msa0686360 | AT1G05610.2 | 36.923 | 455 | 247 | 13 | 94 | 533 | 53 | 482 | 2.60e-90 | 285 |
Find 146 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTGCTCGCACCTATTT+TGG | 0.081433 | 4_4:-50805941 | Msa0686360:CDS |
| CAAATTTGCTATATGGTTAT+TGG | 0.138588 | 4_4:+50806893 | None:intergenic |
| ATTCTCAATGTTAGTGTTCT+TGG | 0.168119 | 4_4:+50805475 | None:intergenic |
| CAGAGTGAGATTTAGATTAT+TGG | 0.181573 | 4_4:+50807252 | None:intergenic |
| GTGTCAACTTCAGACCTTTC+AGG | 0.205906 | 4_4:-50806269 | Msa0686360:intron |
| ACATATATATATAAACAAAA+AGG | 0.210336 | 4_4:+50803149 | None:intergenic |
| GTTGATGCCATTTCCAAAAT+AGG | 0.213388 | 4_4:+50805928 | None:intergenic |
| TCTGTTCTCAAAGTAATCTT+TGG | 0.235135 | 4_4:+50803216 | None:intergenic |
| CTTTCCTCAAATTTGCTATA+TGG | 0.245307 | 4_4:+50806886 | None:intergenic |
| GGCCTTCTTAACCCTCTCTT+TGG | 0.286759 | 4_4:+50806761 | None:intergenic |
| TTCAGTCGTGCATCGGATTA+TGG | 0.294471 | 4_4:-50805151 | Msa0686360:intron |
| AAATGTTGCTTCCATTGTAT+TGG | 0.295734 | 4_4:-50806212 | Msa0686360:CDS |
| GTCACCATACATTGCATCTA+TGG | 0.295799 | 4_4:-50804661 | Msa0686360:CDS |
| TCTTGGACAGGCATCAGTTT+TGG | 0.302266 | 4_4:-50806118 | Msa0686360:CDS |
| TGCTAGCTCAGAAGCAATTT+CGG | 0.314259 | 4_4:+50803711 | None:intergenic |
| AGCAGGTGTAGCAGCTCTTT+TGG | 0.314559 | 4_4:+50806156 | None:intergenic |
| GATGGAATTCCAAATGGAAT+TGG | 0.315379 | 4_4:+50807202 | None:intergenic |
| AATGTTGCTTCCATTGTATT+GGG | 0.317534 | 4_4:-50806211 | Msa0686360:CDS |
| TTTGATAGACAAGTAATTGA+TGG | 0.319357 | 4_4:+50807184 | None:intergenic |
| GAACGTTCACGTTTGGATTA+CGG | 0.324212 | 4_4:-50803998 | Msa0686360:CDS |
| GTGTACGCGCGCAGAGTAGA+AGG | 0.324381 | 4_4:-50803118 | Msa0686360:three_prime_UTR |
| TGTCAAACCAAGATGCATTA+AGG | 0.343976 | 4_4:-50804683 | Msa0686360:CDS |
| CTCAGAAGCAATTTCGGATT+CGG | 0.345496 | 4_4:+50803717 | None:intergenic |
| TTTGTTGGTGGTAAGAATCT+TGG | 0.351797 | 4_4:+50804198 | None:intergenic |
| CTGTTACTTCCAATCCCAAT+AGG | 0.370914 | 4_4:+50803676 | None:intergenic |
| GCACAGGGAAAGGTTCCTAT+TGG | 0.371034 | 4_4:-50803691 | Msa0686360:CDS |
| GAATCTTGGAGATGTGAAAA+TGG | 0.376696 | 4_4:+50804212 | None:intergenic |
| CTGCATTTATCAATCTTTGT+TGG | 0.377402 | 4_4:+50804183 | None:intergenic |
| TCATATATCCCAATTCCATT+TGG | 0.389918 | 4_4:-50807211 | Msa0686360:five_prime_UTR |
| TGTGGGTGAACGTTCACGTT+TGG | 0.391042 | 4_4:-50804005 | Msa0686360:CDS |
| TTTGGAAATGGCATCAACTT+TGG | 0.391193 | 4_4:-50805923 | Msa0686360:CDS |
| GATTTCAGATCCAAAGTCAT+TGG | 0.397964 | 4_4:+50804578 | None:intergenic |
| CGGATGTAAAATCCATCTTC+TGG | 0.403798 | 4_4:+50803327 | None:intergenic |
| AGCAGACACAACACCAGGTT+TGG | 0.410213 | 4_4:+50806740 | None:intergenic |
| CATTGAGAATGTAATAATCT+TGG | 0.411542 | 4_4:-50805462 | Msa0686360:CDS |
| CATCCCTCTCGTGAAGGCTC+TGG | 0.412851 | 4_4:-50807368 | Msa0686360:five_prime_UTR |
| ACTCAAACGCCAGGAGAAGC+TGG | 0.413697 | 4_4:-50805560 | Msa0686360:CDS |
| ATTGTATTGGGAGGAGGTCC+TGG | 0.415190 | 4_4:-50806199 | Msa0686360:CDS |
| CACAGGGAAAGGTTCCTATT+GGG | 0.422057 | 4_4:-50803690 | Msa0686360:CDS |
| GGATTACGGTGTTGAGCTCC+AGG | 0.426885 | 4_4:-50803984 | Msa0686360:intron |
| AATCATTCCTGCATCTGTTA+AGG | 0.427773 | 4_4:-50804559 | Msa0686360:CDS |
| AAATGATGCCGTTGAGACTA+AGG | 0.434380 | 4_4:-50806706 | Msa0686360:intron |
| GAGATTTAGATTATTGGAAA+TGG | 0.434389 | 4_4:+50807258 | None:intergenic |
| ATGGAATTCCAAATGGAATT+GGG | 0.435541 | 4_4:+50807203 | None:intergenic |
| AAGCAATTTCGGATTCGGTT+TGG | 0.438840 | 4_4:+50803722 | None:intergenic |
| TCCTTGGATGATTAATCAGT+TGG | 0.439153 | 4_4:-50806799 | Msa0686360:CDS |
| CACATCAATAAAATGATTGA+AGG | 0.441960 | 4_4:-50803033 | Msa0686360:three_prime_UTR |
| TTTACAGGACACTGTAATGA+TGG | 0.445727 | 4_4:-50803758 | Msa0686360:intron |
| GGAAAGGTTCCTATTGGGAT+TGG | 0.456229 | 4_4:-50803685 | Msa0686360:CDS |
| ATTGACAAGAATGCCAGGAT+TGG | 0.456643 | 4_4:-50803531 | Msa0686360:CDS |
| GCTTCCATTGTATTGGGAGG+AGG | 0.457513 | 4_4:-50806205 | Msa0686360:CDS |
| AGATCCAAAGTCATTGGATG+TGG | 0.463757 | 4_4:+50804584 | None:intergenic |
| TTTGGTTTCTCTATTGTACA+TGG | 0.464532 | 4_4:+50803175 | None:intergenic |
| CAACAAAGATTGATAAATGC+AGG | 0.467155 | 4_4:-50804182 | Msa0686360:CDS |
| TTGCATTCCTTAACAGATGC+AGG | 0.468552 | 4_4:+50804552 | None:intergenic |
| TTGACAAGAATGCCAGGATT+GGG | 0.469631 | 4_4:-50803530 | Msa0686360:CDS |
| GATTTAAGATCAGCACCCTT+AGG | 0.470111 | 4_4:+50805079 | None:intergenic |
| TTTAATTGCGAGTGTAAGAA+AGG | 0.472458 | 4_4:+50807141 | None:intergenic |
| TTGGAAGTAACAGCAAAATC+AGG | 0.473432 | 4_4:-50803666 | Msa0686360:intron |
| ATCAGGAATCACAATTGTAA+TGG | 0.475871 | 4_4:-50803304 | Msa0686360:CDS |
| CATTTATCAATCTTTGTTGG+TGG | 0.476162 | 4_4:+50804186 | None:intergenic |
| GGATCATAAAATTTGAACAT+TGG | 0.476650 | 4_4:+50804243 | None:intergenic |
| GTAATTGATGGAATTCCAAA+TGG | 0.479083 | 4_4:+50807196 | None:intergenic |
| TCTTGGTGAGAGAATCAAAC+GGG | 0.481456 | 4_4:-50806835 | Msa0686360:CDS |
| AGAGCCTTCACGAGAGGGAT+GGG | 0.485393 | 4_4:+50807370 | None:intergenic |
| AACCAAAGAGAGGGTTAAGA+AGG | 0.486759 | 4_4:-50806763 | Msa0686360:CDS |
| GGGGTGTAAATTATAGTCCT+TGG | 0.487576 | 4_4:-50806815 | Msa0686360:CDS |
| TATCCCACATCCAATGACTT+TGG | 0.491448 | 4_4:-50804588 | Msa0686360:CDS |
| ATGCTGTGAGGCAATTTACA+TGG | 0.492795 | 4_4:-50805511 | Msa0686360:CDS |
| ATAACCATATAGCAAATTTG+AGG | 0.496126 | 4_4:-50806890 | Msa0686360:CDS |
| TGGAAATGGTAACTGAAGGC+TGG | 0.504066 | 4_4:+50807272 | None:intergenic |
| GATGTGAAAATGGGTGTCTT+GGG | 0.504166 | 4_4:+50804222 | None:intergenic |
| ATGGTGACCTTAATGCATCT+TGG | 0.504813 | 4_4:+50804676 | None:intergenic |
| AGATGTGAAAATGGGTGTCT+TGG | 0.510373 | 4_4:+50804221 | None:intergenic |
| GGGTGCTGATCTTAAATCAA+TGG | 0.510966 | 4_4:-50805074 | Msa0686360:intron |
| CAGAGCCTTCACGAGAGGGA+TGG | 0.511936 | 4_4:+50807369 | None:intergenic |
| CATGTGCTGCTGTTGGTGAC+AGG | 0.513782 | 4_4:-50805270 | Msa0686360:intron |
| GATGACATCTTTCCCAATCC+TGG | 0.514030 | 4_4:+50803518 | None:intergenic |
| CCTTGGATGATTAATCAGTT+GGG | 0.517935 | 4_4:-50806798 | Msa0686360:CDS |
| AATCTTGGAGATGTGAAAAT+GGG | 0.520261 | 4_4:+50804213 | None:intergenic |
| ACTCCCATAGATGCAATGTA+TGG | 0.523851 | 4_4:+50804657 | None:intergenic |
| GGATTACATGGACCTTGTGC+AGG | 0.524100 | 4_4:-50805417 | Msa0686360:intron |
| GCAATTTACATGGGTATTCG+AGG | 0.524909 | 4_4:-50805501 | Msa0686360:CDS |
| AGTAAATCATTGTCTTGGAC+AGG | 0.525734 | 4_4:-50806130 | Msa0686360:CDS |
| AAGATTACTTTGAGAACAGA+AGG | 0.526225 | 4_4:-50803213 | Msa0686360:three_prime_UTR |
| TTGGCGGCTACTCAAACGCC+AGG | 0.530303 | 4_4:-50805569 | Msa0686360:CDS |
| GAAGCAGATAGACCAGAAGA+TGG | 0.532366 | 4_4:-50803339 | Msa0686360:CDS |
| TGGTGATCATCTATATAGAA+TGG | 0.536677 | 4_4:-50805438 | Msa0686360:CDS |
| CTGTGAGTAAATCATTGTCT+TGG | 0.537181 | 4_4:-50806135 | Msa0686360:CDS |
| GTTGTACACTACATTCTCTC+AGG | 0.537660 | 4_4:+50804035 | None:intergenic |
| AATTGCTTCTGAGCTAGCAC+AGG | 0.540855 | 4_4:-50803707 | Msa0686360:CDS |
| AATGGCATCAACTTTGGAGA+TGG | 0.542455 | 4_4:-50805917 | Msa0686360:CDS |
| TACTCAAGCTTCTAAAATGG+AGG | 0.545196 | 4_4:-50804611 | Msa0686360:CDS |
| GGAGACTATTGGGAAGACAT+TGG | 0.550910 | 4_4:-50804412 | Msa0686360:CDS |
| CTCAAACGCCAGGAGAAGCT+GGG | 0.551829 | 4_4:-50805559 | Msa0686360:CDS |
| GACAATGATTTACTCACAGC+AGG | 0.554762 | 4_4:+50806139 | None:intergenic |
| GTATAATTGACAAGAATGCC+AGG | 0.558591 | 4_4:-50803536 | Msa0686360:CDS |
| TTCTGAGCTAGCACAGGGAA+AGG | 0.561514 | 4_4:-50803701 | Msa0686360:CDS |
| TCTATATAGAATGGATTACA+TGG | 0.561991 | 4_4:-50805429 | Msa0686360:CDS |
| TGTCATATAAGTGGCTAGCA+TGG | 0.566975 | 4_4:-50803256 | Msa0686360:exon |
| TCACCATACATTGCATCTAT+GGG | 0.568354 | 4_4:-50804660 | Msa0686360:CDS |
| GATAAATGATGGAACCTGAA+AGG | 0.574662 | 4_4:+50806255 | None:intergenic |
| AGGGTTAAGAAGGCCAAACC+TGG | 0.576523 | 4_4:-50806753 | Msa0686360:CDS |
| TTACAGGACACTGTAATGAT+GGG | 0.576561 | 4_4:-50803757 | Msa0686360:intron |
| CCCAACTGATTAATCATCCA+AGG | 0.580151 | 4_4:+50806798 | None:intergenic |
| AATGGAGAAAGCGACAATAG+AGG | 0.583953 | 4_4:-50803286 | Msa0686360:CDS |
| TTACAATTGTGATTCCTGAT+CGG | 0.588358 | 4_4:+50803307 | None:intergenic |
| GAGCCTTCACGAGAGGGATG+GGG | 0.589768 | 4_4:+50807371 | None:intergenic |
| TTTCCCCATCCCTCTCGTGA+AGG | 0.589980 | 4_4:-50807374 | Msa0686360:five_prime_UTR |
| GGACGGCACTGTCATATAAG+TGG | 0.592247 | 4_4:-50803265 | Msa0686360:exon |
| GAGAATGTAATAATCTTGGC+TGG | 0.593829 | 4_4:-50805458 | Msa0686360:CDS |
| AGTGTACAACACTCCATTGT+GGG | 0.594262 | 4_4:-50804022 | Msa0686360:CDS |
| CAACTTTGGAGATGGATATG+TGG | 0.599466 | 4_4:-50805909 | Msa0686360:CDS |
| ACAGTATCATGTGCTGCTGT+TGG | 0.599712 | 4_4:-50805277 | Msa0686360:CDS |
| ACGTGAACGTTCACCCACAA+TGG | 0.600506 | 4_4:+50804009 | None:intergenic |
| AACAAAGATTGATAAATGCA+GGG | 0.604087 | 4_4:-50804181 | Msa0686360:intron |
| GAGCCAGAGCCTTCACGAGA+GGG | 0.604639 | 4_4:+50807365 | None:intergenic |
| TGTACGCGCGCAGAGTAGAA+GGG | 0.606979 | 4_4:-50803117 | Msa0686360:three_prime_UTR |
| TCAGCTTACCTTAGTCTCAA+CGG | 0.607553 | 4_4:+50806698 | None:intergenic |
| GTTGCTTCCATTGTATTGGG+AGG | 0.607715 | 4_4:-50806208 | Msa0686360:CDS |
| TAACATGGCTCTTACTGAAG+AGG | 0.608858 | 4_4:-50804365 | Msa0686360:intron |
| TAAGTTTGAGAACCAAAGAG+AGG | 0.613319 | 4_4:-50806773 | Msa0686360:CDS |
| TTCTTGGTGAGAGAATCAAA+CGG | 0.617258 | 4_4:-50806836 | Msa0686360:CDS |
| AGGACCTCCTCCCAATACAA+TGG | 0.628390 | 4_4:+50806201 | None:intergenic |
| GATCCAAAGTCATTGGATGT+GGG | 0.628997 | 4_4:+50804585 | None:intergenic |
| AGAACAGCAGACACAACACC+AGG | 0.631071 | 4_4:+50806735 | None:intergenic |
| ACAAGAAGACACCATTGTGA+TGG | 0.631724 | 4_4:+50806929 | None:intergenic |
| TGCTGTGAGGCAATTTACAT+GGG | 0.632280 | 4_4:-50805510 | Msa0686360:CDS |
| AAGTTTGAGAACCAAAGAGA+GGG | 0.633814 | 4_4:-50806772 | Msa0686360:CDS |
| ATCGGATTATGGATTAGTCA+AGG | 0.640623 | 4_4:-50805140 | Msa0686360:CDS |
| TTATTGGAAATGGTAACTGA+AGG | 0.644751 | 4_4:+50807268 | None:intergenic |
| GAGTTGAATGTTGTACTACT+AGG | 0.647529 | 4_4:+50807325 | None:intergenic |
| CTTTGGAGATGGATATGTGG+AGG | 0.648283 | 4_4:-50805906 | Msa0686360:intron |
| TGAGCCAGAGCCTTCACGAG+AGG | 0.648560 | 4_4:+50807364 | None:intergenic |
| AATAGGTGCGAGCAATGTGA+CGG | 0.649705 | 4_4:+50805945 | None:intergenic |
| TTAGTCAAGGTAGATAGCAG+AGG | 0.651808 | 4_4:-50805127 | Msa0686360:CDS |
| GTGGATGCAATAATCTCGCA+TGG | 0.664341 | 4_4:-50804064 | Msa0686360:CDS |
| TAGTGTACAACACTCCATTG+TGG | 0.667376 | 4_4:-50804023 | Msa0686360:CDS |
| ATTGCTTCTGAGCTAGCACA+GGG | 0.674782 | 4_4:-50803706 | Msa0686360:CDS |
| CTTGGTGAGAGAATCAAACG+GGG | 0.681586 | 4_4:-50806834 | Msa0686360:CDS |
| AGGGAACAGCGGATGCTGTG+AGG | 0.682609 | 4_4:-50805523 | Msa0686360:CDS |
| AAATTGGTTTCAGGGAACAG+CGG | 0.688098 | 4_4:-50805534 | Msa0686360:CDS |
| GAGAAAGCGACAATAGAGGA+CGG | 0.689943 | 4_4:-50803282 | Msa0686360:CDS |
| TTGAATGTTGTACTACTAGG+TGG | 0.693319 | 4_4:+50807328 | None:intergenic |
| TTGATACATCACCATCACAA+TGG | 0.696769 | 4_4:-50806940 | Msa0686360:exon |
| AATAATTGAATACCTGCACA+AGG | 0.713289 | 4_4:+50805405 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATTATGATCAAATT+AGG | + | chr4_4:50805626-50805645 | None:intergenic | 10.0% |
| !!! | CATAATATATTTATCTTTTT+TGG | - | chr4_4:50805634-50805653 | Msa0686360:intron | 10.0% |
| !!! | AAAATTTTGTTTTAAATGTT+AGG | + | chr4_4:50806626-50806645 | None:intergenic | 10.0% |
| !! | ATATATATATAAACAAAAAG+GGG | + | chr4_4:50807253-50807272 | None:intergenic | 10.0% |
| !! | CATATATATATAAACAAAAA+GGG | + | chr4_4:50807254-50807273 | None:intergenic | 10.0% |
| !! | ACATATATATATAAACAAAA+AGG | + | chr4_4:50807255-50807274 | None:intergenic | 10.0% |
| !!! | AATATTTTTCATCATGATAA+TGG | - | chr4_4:50803540-50803559 | Msa0686360:CDS | 15.0% |
| !!! | AAAAAATATTTTAACGCTTA+TGG | - | chr4_4:50804013-50804032 | Msa0686360:CDS | 15.0% |
| !! | AAAAACGAAAAACATTTAAA+AGG | + | chr4_4:50805174-50805193 | None:intergenic | 15.0% |
| !! | TGATTATTAAAACACTTTAA+AGG | + | chr4_4:50805903-50805922 | None:intergenic | 15.0% |
| !!! | CATTTAAAACAAAATTTTAC+AGG | - | chr4_4:50806628-50806647 | Msa0686360:intron | 15.0% |
| !! | AAAAGAAATATATGGTAAAA+GGG | + | chr4_4:50806937-50806956 | None:intergenic | 15.0% |
| !! | TAAAAGAAATATATGGTAAA+AGG | + | chr4_4:50806938-50806957 | None:intergenic | 15.0% |
| !! | TCAAATGTAAAAGAAATATA+TGG | + | chr4_4:50806945-50806964 | None:intergenic | 15.0% |
| !! | TATATATATAAACAAAAAGG+GGG | + | chr4_4:50807252-50807271 | None:intergenic | 15.0% |
| !! | AATGTTAATGAAGAAATGAA+TGG | + | chr4_4:50803311-50803330 | None:intergenic | 20.0% |
| !! | AAATTTAGCTACATAATATC+AGG | + | chr4_4:50804069-50804088 | None:intergenic | 20.0% |
| !! | TTGAACTTTAATAAATGTAC+AGG | + | chr4_4:50805358-50805377 | None:intergenic | 20.0% |
| !! | TTTAACGAAATGTATTTGAA+AGG | - | chr4_4:50805480-50805499 | Msa0686360:CDS | 20.0% |
| !! | TTAACGAAATGTATTTGAAA+GGG | - | chr4_4:50805481-50805500 | Msa0686360:CDS | 20.0% |
| !!! | TTTTGTTTTGTTTTTGTAAC+AGG | + | chr4_4:50805541-50805560 | None:intergenic | 20.0% |
| !! | AAAACAAAAAAAGACTTAGA+GGG | - | chr4_4:50805552-50805571 | Msa0686360:CDS | 20.0% |
| !! | AAAAAAAATGCCTGAAAAAA+AGG | + | chr4_4:50805968-50805987 | None:intergenic | 20.0% |
| !!! | TTTTTTCAGGCATTTTTTTT+CGG | - | chr4_4:50805968-50805987 | Msa0686360:CDS | 20.0% |
| !! | AAAGAAATATATGGTAAAAG+GGG | + | chr4_4:50806936-50806955 | None:intergenic | 20.0% |
| ! | GAGATTTAGATTATTGGAAA+TGG | + | chr4_4:50803146-50803165 | None:intergenic | 25.0% |
| ! | TTTGATAGACAAGTAATTGA+TGG | + | chr4_4:50803220-50803239 | None:intergenic | 25.0% |
| !!! | CAAATTTGCTATATGGTTAT+TGG | + | chr4_4:50803511-50803530 | None:intergenic | 25.0% |
| ! | ATAACCATATAGCAAATTTG+AGG | - | chr4_4:50803511-50803530 | Msa0686360:CDS | 25.0% |
| !!! | TATAAAGGATTTTGAAGTCT+CGG | + | chr4_4:50803848-50803867 | None:intergenic | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+CGG | - | chr4_4:50803851-50803870 | Msa0686360:intron | 25.0% |
| ! | TGATTCTTATGTTCTTATTG+TGG | - | chr4_4:50804110-50804129 | Msa0686360:intron | 25.0% |
| !! | GCTTTTATTCTGATAAATGA+TGG | + | chr4_4:50804160-50804179 | None:intergenic | 25.0% |
| !! | TGATACTGTTTACATTTTTC+AGG | - | chr4_4:50804324-50804343 | Msa0686360:intron | 25.0% |
| !!! | ATAAACTTGCTAAGCTAATA+TGG | - | chr4_4:50804560-50804579 | Msa0686360:CDS | 25.0% |
| ! | TTCATTTCGTTTCAAAACAT+TGG | + | chr4_4:50804746-50804765 | None:intergenic | 25.0% |
| ! | AATGAATAATGTCATGATGA+AGG | - | chr4_4:50804760-50804779 | Msa0686360:intron | 25.0% |
| ! | CATTGAGAATGTAATAATCT+TGG | - | chr4_4:50804939-50804958 | Msa0686360:intron | 25.0% |
| !!! | TCTATATAGAATGGATTACA+TGG | - | chr4_4:50804972-50804991 | Msa0686360:intron | 25.0% |
| ! | AAATGTATTTGAAAGGGTAA+CGG | - | chr4_4:50805487-50805506 | Msa0686360:CDS | 25.0% |
| ! | CAAAACAAAAAAAGACTTAG+AGG | - | chr4_4:50805551-50805570 | Msa0686360:CDS | 25.0% |
| !!! | TTTTACTCAAGCTTCTAAAA+TGG | - | chr4_4:50805787-50805806 | Msa0686360:intron | 25.0% |
| ! | ATAGTGTAATTTCTCTTACT+TGG | + | chr4_4:50805878-50805897 | None:intergenic | 25.0% |
| !! | TTTTAATAATCACTCCTTTC+TGG | - | chr4_4:50805911-50805930 | Msa0686360:CDS | 25.0% |
| !!! | ATTTGTTTTGCCTTTTTTTC+AGG | - | chr4_4:50805955-50805974 | Msa0686360:CDS | 25.0% |
| !!! | ATTTTTTTTCGGAGACTATT+GGG | - | chr4_4:50805979-50805998 | Msa0686360:intron | 25.0% |
| !! | AACAATGTTAGTTTCATGAT+AGG | + | chr4_4:50806117-50806136 | None:intergenic | 25.0% |
| ! | GGATCATAAAATTTGAACAT+TGG | + | chr4_4:50806161-50806180 | None:intergenic | 25.0% |
| ! | AACAAAGATTGATAAATGCA+GGG | - | chr4_4:50806220-50806239 | Msa0686360:CDS | 25.0% |
| ! | ATGAATGTTCAATATTCTAC+AGG | + | chr4_4:50806808-50806827 | None:intergenic | 25.0% |
| !!! | ATTCAAATGCTTTGTTTGTA+GGG | - | chr4_4:50807032-50807051 | Msa0686360:intron | 25.0% |
| !!! | GTTCTATTTTTACATGTAGT+GGG | + | chr4_4:50807315-50807334 | None:intergenic | 25.0% |
| ! | CACATCAATAAAATGATTGA+AGG | - | chr4_4:50807368-50807387 | Msa0686360:five_prime_UTR | 25.0% |
| TTATTGGAAATGGTAACTGA+AGG | + | chr4_4:50803136-50803155 | None:intergenic | 30.0% | |
| CAGAGTGAGATTTAGATTAT+TGG | + | chr4_4:50803152-50803171 | None:intergenic | 30.0% | |
| TCATATATCCCAATTCCATT+TGG | - | chr4_4:50803190-50803209 | Msa0686360:three_prime_UTR | 30.0% | |
| ATGGAATTCCAAATGGAATT+GGG | + | chr4_4:50803201-50803220 | None:intergenic | 30.0% | |
| GTAATTGATGGAATTCCAAA+TGG | + | chr4_4:50803208-50803227 | None:intergenic | 30.0% | |
| TTTAATTGCGAGTGTAAGAA+AGG | + | chr4_4:50803263-50803282 | None:intergenic | 30.0% | |
| !! | CTTTCCTCAAATTTGCTATA+TGG | + | chr4_4:50803518-50803537 | None:intergenic | 30.0% |
| !!! | CATCATGATAATGGTTTTCT+TGG | - | chr4_4:50803549-50803568 | Msa0686360:intron | 30.0% |
| ! | TTTTTCCGCAATACAAAAGT+TGG | + | chr4_4:50803784-50803803 | None:intergenic | 30.0% |
| TTTGTATTGCGGAAAAATCT+TGG | - | chr4_4:50803787-50803806 | Msa0686360:intron | 30.0% | |
| AAATTATGGCCGCAATATAA+AGG | + | chr4_4:50803863-50803882 | None:intergenic | 30.0% | |
| ! | TTATATTGCGGCCATAATTT+TGG | - | chr4_4:50803863-50803882 | Msa0686360:intron | 30.0% |
| TCAGCTATAGTGGTAAAAAA+TGG | + | chr4_4:50803918-50803937 | None:intergenic | 30.0% | |
| AATATCAGGAACAAAGTCTT+CGG | + | chr4_4:50804055-50804074 | None:intergenic | 30.0% | |
| !!! | CAATGGAAGCAACATTTTTT+GGG | + | chr4_4:50804186-50804205 | None:intergenic | 30.0% |
| !!! | ACAATGGAAGCAACATTTTT+TGG | + | chr4_4:50804187-50804206 | None:intergenic | 30.0% |
| ! | AAATGTTGCTTCCATTGTAT+TGG | - | chr4_4:50804189-50804208 | Msa0686360:CDS | 30.0% |
| ! | AATGTTGCTTCCATTGTATT+GGG | - | chr4_4:50804190-50804209 | Msa0686360:CDS | 30.0% |
| ATTCTCAATGTTAGTGTTCT+TGG | + | chr4_4:50804929-50804948 | None:intergenic | 30.0% | |
| TGGTGATCATCTATATAGAA+TGG | - | chr4_4:50804963-50804982 | Msa0686360:intron | 30.0% | |
| AATAATTGAATACCTGCACA+AGG | + | chr4_4:50804999-50805018 | None:intergenic | 30.0% | |
| ! | CAATTTTCGGAAAAACCTAA+GGG | - | chr4_4:50805307-50805326 | Msa0686360:CDS | 30.0% |
| AAAGACTTAGAGGGTTAATA+TGG | - | chr4_4:50805561-50805580 | Msa0686360:CDS | 30.0% | |
| !!! | CATTTTTTTTCGGAGACTAT+TGG | - | chr4_4:50805978-50805997 | Msa0686360:intron | 30.0% |
| ! | ATCATTTTACGATGCTAACA+TGG | - | chr4_4:50806021-50806040 | Msa0686360:intron | 30.0% |
| AATCTTGGAGATGTGAAAAT+GGG | + | chr4_4:50806191-50806210 | None:intergenic | 30.0% | |
| CATTTATCAATCTTTGTTGG+TGG | + | chr4_4:50806218-50806237 | None:intergenic | 30.0% | |
| CTGCATTTATCAATCTTTGT+TGG | + | chr4_4:50806221-50806240 | None:intergenic | 30.0% | |
| CAACAAAGATTGATAAATGC+AGG | - | chr4_4:50806219-50806238 | Msa0686360:CDS | 30.0% | |
| AGAAATTATGGTAGTTTACC+TGG | + | chr4_4:50806438-50806457 | None:intergenic | 30.0% | |
| GGTAAACTACCATAATTTCT+TGG | - | chr4_4:50806438-50806457 | Msa0686360:intron | 30.0% | |
| GCAATTAATGATTGACATTG+TGG | - | chr4_4:50806504-50806523 | Msa0686360:intron | 30.0% | |
| GTTCAATATTCTACAGGTTA+TGG | + | chr4_4:50806802-50806821 | None:intergenic | 30.0% | |
| !! | TTACTTGTTGTCTTTGTTGA+AGG | - | chr4_4:50806838-50806857 | Msa0686360:CDS | 30.0% |
| ! | TTTGAGTCCATTTTGTTAGT+TGG | - | chr4_4:50806960-50806979 | Msa0686360:five_prime_UTR | 30.0% |
| AAAACCACCAACTAACAAAA+TGG | + | chr4_4:50806970-50806989 | None:intergenic | 30.0% | |
| ! | CTACAAACAAAGCATTTGAA+TGG | + | chr4_4:50807033-50807052 | None:intergenic | 30.0% |
| !! | CATTCAAATGCTTTGTTTGT+AGG | - | chr4_4:50807031-50807050 | Msa0686360:intron | 30.0% |
| TTACAATTGTGATTCCTGAT+CGG | + | chr4_4:50807097-50807116 | None:intergenic | 30.0% | |
| ATCAGGAATCACAATTGTAA+TGG | - | chr4_4:50807097-50807116 | Msa0686360:intron | 30.0% | |
| TCTGTTCTCAAAGTAATCTT+TGG | + | chr4_4:50807188-50807207 | None:intergenic | 30.0% | |
| ! | AAGATTACTTTGAGAACAGA+AGG | - | chr4_4:50807188-50807207 | Msa0686360:five_prime_UTR | 30.0% |
| ! | TTTGGTTTCTCTATTGTACA+TGG | + | chr4_4:50807229-50807248 | None:intergenic | 30.0% |
| ATATAAACAAAAAGGGGGTT+TGG | + | chr4_4:50807247-50807266 | None:intergenic | 30.0% | |
| !! | TATTTTTACATGTAGTGGGA+GGG | + | chr4_4:50807311-50807330 | None:intergenic | 30.0% |
| !!! | CGTTCTATTTTTACATGTAG+TGG | + | chr4_4:50807316-50807335 | None:intergenic | 30.0% |
| !!! | GTACTACTAGGTGGTTTTAT+TGG | + | chr4_4:50803067-50803086 | None:intergenic | 35.0% |
| TTGAATGTTGTACTACTAGG+TGG | + | chr4_4:50803076-50803095 | None:intergenic | 35.0% | |
| GAGTTGAATGTTGTACTACT+AGG | + | chr4_4:50803079-50803098 | None:intergenic | 35.0% | |
| GATGGAATTCCAAATGGAAT+TGG | + | chr4_4:50803202-50803221 | None:intergenic | 35.0% | |
| TTGATACATCACCATCACAA+TGG | - | chr4_4:50803461-50803480 | Msa0686360:intron | 35.0% | |
| TTCTTGGTGAGAGAATCAAA+CGG | - | chr4_4:50803565-50803584 | Msa0686360:intron | 35.0% | |
| TCCTTGGATGATTAATCAGT+TGG | - | chr4_4:50803602-50803621 | Msa0686360:intron | 35.0% | |
| CCTTGGATGATTAATCAGTT+GGG | - | chr4_4:50803603-50803622 | Msa0686360:intron | 35.0% | |
| TAAGTTTGAGAACCAAAGAG+AGG | - | chr4_4:50803628-50803647 | Msa0686360:intron | 35.0% | |
| AAGTTTGAGAACCAAAGAGA+GGG | - | chr4_4:50803629-50803648 | Msa0686360:intron | 35.0% | |
| !!! | GATTCCATGGTTTTAAACTG+TGG | + | chr4_4:50803896-50803915 | None:intergenic | 35.0% |
| ! | GTGGTAAAAAATGGATTCCA+TGG | + | chr4_4:50803909-50803928 | None:intergenic | 35.0% |
| ! | TTTTACCACTATAGCTGATG+TGG | - | chr4_4:50803920-50803939 | Msa0686360:intron | 35.0% |
| ATATCAGGAACAAAGTCTTC+GGG | + | chr4_4:50804054-50804073 | None:intergenic | 35.0% | |
| ! | GATAAATGATGGAACCTGAA+AGG | + | chr4_4:50804149-50804168 | None:intergenic | 35.0% |
| ! | CTCTTTTGGTAAGAGGAAAA+AGG | + | chr4_4:50804234-50804253 | None:intergenic | 35.0% |
| CTGTGAGTAAATCATTGTCT+TGG | - | chr4_4:50804266-50804285 | Msa0686360:intron | 35.0% | |
| AGTAAATCATTGTCTTGGAC+AGG | - | chr4_4:50804271-50804290 | Msa0686360:intron | 35.0% | |
| !!! | TACATTTTTCAGGTACCTGT+CGG | - | chr4_4:50804334-50804353 | Msa0686360:intron | 35.0% |
| ! | GTTGATGCCATTTCCAAAAT+AGG | + | chr4_4:50804476-50804495 | None:intergenic | 35.0% |
| TTTGGAAATGGCATCAACTT+TGG | - | chr4_4:50804478-50804497 | Msa0686360:intron | 35.0% | |
| ! | ATATGTGGAGGTATGTATCA+AGG | - | chr4_4:50804507-50804526 | Msa0686360:intron | 35.0% |
| GAGAATGTAATAATCTTGGC+TGG | - | chr4_4:50804943-50804962 | Msa0686360:intron | 35.0% | |
| !! | ATCGGATTATGGATTAGTCA+AGG | - | chr4_4:50805261-50805280 | Msa0686360:intron | 35.0% |
| ! | CCTTAGGTTTTTCCGAAAAT+TGG | + | chr4_4:50805309-50805328 | None:intergenic | 35.0% |
| ! | CCAATTTTCGGAAAAACCTA+AGG | - | chr4_4:50805306-50805325 | Msa0686360:CDS | 35.0% |
| TCTTCATTACGTGACAGAAA+CGG | + | chr4_4:50805441-50805460 | None:intergenic | 35.0% | |
| !!! | CGCAAACGTTTTAAGACTTA+AGG | - | chr4_4:50805510-50805529 | Msa0686360:CDS | 35.0% |
| GGTACAATGAGATAACTCAA+AGG | - | chr4_4:50805582-50805601 | Msa0686360:intron | 35.0% | |
| TCAGAAACACATGACTATAG+AGG | + | chr4_4:50805660-50805679 | None:intergenic | 35.0% | |
| GTTTGACAATCCAAAAAGAG+AGG | + | chr4_4:50805706-50805725 | None:intergenic | 35.0% | |
| TGTCAAACCAAGATGCATTA+AGG | - | chr4_4:50805718-50805737 | Msa0686360:intron | 35.0% | |
| TCACCATACATTGCATCTAT+GGG | - | chr4_4:50805741-50805760 | Msa0686360:intron | 35.0% | |
| !! | TACTCAAGCTTCTAAAATGG+AGG | - | chr4_4:50805790-50805809 | Msa0686360:intron | 35.0% |
| GATTTCAGATCCAAAGTCAT+TGG | + | chr4_4:50805826-50805845 | None:intergenic | 35.0% | |
| AATCATTCCTGCATCTGTTA+AGG | - | chr4_4:50805842-50805861 | Msa0686360:intron | 35.0% | |
| TAATAATCACTCCTTTCTGG+AGG | - | chr4_4:50805914-50805933 | Msa0686360:CDS | 35.0% | |
| TTGTATTGTTACCTCCAGAA+AGG | + | chr4_4:50805928-50805947 | None:intergenic | 35.0% | |
| GAATCTTGGAGATGTGAAAA+TGG | + | chr4_4:50806192-50806211 | None:intergenic | 35.0% | |
| !! | TTTGTTGGTGGTAAGAATCT+TGG | + | chr4_4:50806206-50806225 | None:intergenic | 35.0% |
| GACATCTAATGAAAACGAAG+AGG | + | chr4_4:50806283-50806302 | None:intergenic | 35.0% | |
| TACAAAGAGCAACTCAAACA+TGG | + | chr4_4:50806313-50806332 | None:intergenic | 35.0% | |
| !!! | AGAACCAAGGTTTTAAACTG+AGG | - | chr4_4:50806474-50806493 | Msa0686360:intron | 35.0% |
| TTTACAGGACACTGTAATGA+TGG | - | chr4_4:50806643-50806662 | Msa0686360:intron | 35.0% | |
| TTACAGGACACTGTAATGAT+GGG | - | chr4_4:50806644-50806663 | Msa0686360:intron | 35.0% | |
| TTGGAAGTAACAGCAAAATC+AGG | - | chr4_4:50806735-50806754 | Msa0686360:CDS | 35.0% | |
| GTATAATTGACAAGAATGCC+AGG | - | chr4_4:50806865-50806884 | Msa0686360:CDS | 35.0% | |
| !!! | CTATTTTTACATGTAGTGGG+AGG | + | chr4_4:50807312-50807331 | None:intergenic | 35.0% |
| ACAAGAAGACACCATTGTGA+TGG | + | chr4_4:50803475-50803494 | None:intergenic | 40.0% | |
| TCTTGGTGAGAGAATCAAAC+GGG | - | chr4_4:50803566-50803585 | Msa0686360:intron | 40.0% | |
| GGGGTGTAAATTATAGTCCT+TGG | - | chr4_4:50803586-50803605 | Msa0686360:intron | 40.0% | |
| CCCAACTGATTAATCATCCA+AGG | + | chr4_4:50803606-50803625 | None:intergenic | 40.0% | |
| AACCAAAGAGAGGGTTAAGA+AGG | - | chr4_4:50803638-50803657 | Msa0686360:intron | 40.0% | |
| AAATGATGCCGTTGAGACTA+AGG | - | chr4_4:50803695-50803714 | Msa0686360:CDS | 40.0% | |
| TCAGCTTACCTTAGTCTCAA+CGG | + | chr4_4:50803706-50803725 | None:intergenic | 40.0% | |
| AGGTAAGCTGAATCATGTTG+AGG | - | chr4_4:50803715-50803734 | Msa0686360:CDS | 40.0% | |
| GGTAAGCTGAATCATGTTGA+GGG | - | chr4_4:50803716-50803735 | Msa0686360:CDS | 40.0% | |
| GTAAGCTGAATCATGTTGAG+GGG | - | chr4_4:50803717-50803736 | Msa0686360:CDS | 40.0% | |
| ! | CGATCTTTTCAAAACCACGA+CGG | + | chr4_4:50803744-50803763 | None:intergenic | 40.0% |
| !!! | CGTGGTTTTGAAAAGATCGT+AGG | - | chr4_4:50803745-50803764 | Msa0686360:CDS | 40.0% |
| ! | CACTGCCAACTTTTGTATTG+CGG | - | chr4_4:50803776-50803795 | Msa0686360:intron | 40.0% |
| GTGGTCCACAACCAAAATTA+TGG | + | chr4_4:50803877-50803896 | None:intergenic | 40.0% | |
| ! | TGGACCACAGTTTAAAACCA+TGG | - | chr4_4:50803889-50803908 | Msa0686360:intron | 40.0% |
| GACAATGATTTACTCACAGC+AGG | + | chr4_4:50804265-50804284 | None:intergenic | 40.0% | |
| CTGTTGATACAGTTGCTCAT+TGG | + | chr4_4:50804385-50804404 | None:intergenic | 40.0% | |
| ATGAGCAACTGTATCAACAG+TGG | - | chr4_4:50804385-50804404 | Msa0686360:CDS | 40.0% | |
| ! | AATGGCATCAACTTTGGAGA+TGG | - | chr4_4:50804484-50804503 | Msa0686360:intron | 40.0% |
| ! | CAACTTTGGAGATGGATATG+TGG | - | chr4_4:50804492-50804511 | Msa0686360:intron | 40.0% |
| ! | GGAGGTATGTATCAAGGAAT+TGG | - | chr4_4:50804513-50804532 | Msa0686360:intron | 40.0% |
| CTATCGTGTGTTCGATTTCA+TGG | + | chr4_4:50804809-50804828 | None:intergenic | 40.0% | |
| CATGAAATCGAACACACGAT+AGG | - | chr4_4:50804807-50804826 | Msa0686360:intron | 40.0% | |
| ! | ATCGAACACACGATAGGTTT+TGG | - | chr4_4:50804813-50804832 | Msa0686360:intron | 40.0% |
| ! | AGCTGGGAAAAATTGGTTTC+AGG | - | chr4_4:50804858-50804877 | Msa0686360:intron | 40.0% |
| ! | GCTGGGAAAAATTGGTTTCA+GGG | - | chr4_4:50804859-50804878 | Msa0686360:intron | 40.0% |
| ! | AAATTGGTTTCAGGGAACAG+CGG | - | chr4_4:50804867-50804886 | Msa0686360:intron | 40.0% |
| ATGCTGTGAGGCAATTTACA+TGG | - | chr4_4:50804890-50804909 | Msa0686360:intron | 40.0% | |
| TGCTGTGAGGCAATTTACAT+GGG | - | chr4_4:50804891-50804910 | Msa0686360:intron | 40.0% | |
| GCAATTTACATGGGTATTCG+AGG | - | chr4_4:50804900-50804919 | Msa0686360:intron | 40.0% | |
| TTAGTCAAGGTAGATAGCAG+AGG | - | chr4_4:50805274-50805293 | Msa0686360:CDS | 40.0% | |
| ! | AGGTCGCATCATCCAATTTT+CGG | - | chr4_4:50805294-50805313 | Msa0686360:CDS | 40.0% |
| ! | GATTTAAGATCAGCACCCTT+AGG | + | chr4_4:50805325-50805344 | None:intergenic | 40.0% |
| !! | GGGTGCTGATCTTAAATCAA+TGG | - | chr4_4:50805327-50805346 | Msa0686360:intron | 40.0% |
| TAGTTCATTCTCTTGCCTCT+TGG | - | chr4_4:50805384-50805403 | Msa0686360:intron | 40.0% | |
| AGTTCATTCTCTTGCCTCTT+GGG | - | chr4_4:50805385-50805404 | Msa0686360:intron | 40.0% | |
| ! | CAAGCAGATACCTCTCTTTT+TGG | - | chr4_4:50805693-50805712 | Msa0686360:intron | 40.0% |
| ATGGTGACCTTAATGCATCT+TGG | + | chr4_4:50805728-50805747 | None:intergenic | 40.0% | |
| GTCACCATACATTGCATCTA+TGG | - | chr4_4:50805740-50805759 | Msa0686360:intron | 40.0% | |
| ACTCCCATAGATGCAATGTA+TGG | + | chr4_4:50805747-50805766 | None:intergenic | 40.0% | |
| TATCCCACATCCAATGACTT+TGG | - | chr4_4:50805813-50805832 | Msa0686360:intron | 40.0% | |
| GATCCAAAGTCATTGGATGT+GGG | + | chr4_4:50805819-50805838 | None:intergenic | 40.0% | |
| AGATCCAAAGTCATTGGATG+TGG | + | chr4_4:50805820-50805839 | None:intergenic | 40.0% | |
| TTGCATTCCTTAACAGATGC+AGG | + | chr4_4:50805852-50805871 | None:intergenic | 40.0% | |
| TAACATGGCTCTTACTGAAG+AGG | - | chr4_4:50806036-50806055 | Msa0686360:intron | 40.0% | |
| GATGTGAAAATGGGTGTCTT+GGG | + | chr4_4:50806182-50806201 | None:intergenic | 40.0% | |
| AGATGTGAAAATGGGTGTCT+TGG | + | chr4_4:50806183-50806202 | None:intergenic | 40.0% | |
| GAGTTGCTCTTTGTAGATTG+TGG | - | chr4_4:50806318-50806337 | Msa0686360:intron | 40.0% | |
| GTTGTACACTACATTCTCTC+AGG | + | chr4_4:50806369-50806388 | None:intergenic | 40.0% | |
| TAGTGTACAACACTCCATTG+TGG | - | chr4_4:50806378-50806397 | Msa0686360:intron | 40.0% | |
| AGTGTACAACACTCCATTGT+GGG | - | chr4_4:50806379-50806398 | Msa0686360:intron | 40.0% | |
| GAACGTTCACGTTTGGATTA+CGG | - | chr4_4:50806403-50806422 | Msa0686360:intron | 40.0% | |
| ! | GCTACCTCAGTTTAAAACCT+TGG | + | chr4_4:50806481-50806500 | None:intergenic | 40.0% |
| !! | AGTTTTCTAGCCAAGCCTTA+GGG | + | chr4_4:50806586-50806605 | None:intergenic | 40.0% |
| !! | TAGTTTTCTAGCCAAGCCTT+AGG | + | chr4_4:50806587-50806606 | None:intergenic | 40.0% |
| ! | AAGCAATTTCGGATTCGGTT+TGG | + | chr4_4:50806682-50806701 | None:intergenic | 40.0% |
| CTCAGAAGCAATTTCGGATT+CGG | + | chr4_4:50806687-50806706 | None:intergenic | 40.0% | |
| TGCTAGCTCAGAAGCAATTT+CGG | + | chr4_4:50806693-50806712 | None:intergenic | 40.0% | |
| ! | CTGTTACTTCCAATCCCAAT+AGG | + | chr4_4:50806728-50806747 | None:intergenic | 40.0% |
| ATTGACAAGAATGCCAGGAT+TGG | - | chr4_4:50806870-50806889 | Msa0686360:CDS | 40.0% | |
| TTGACAAGAATGCCAGGATT+GGG | - | chr4_4:50806871-50806890 | Msa0686360:CDS | 40.0% | |
| CATGAACAAAGATGTGAGCA+TGG | - | chr4_4:50806908-50806927 | Msa0686360:CDS | 40.0% | |
| ! | GAGTCCATTTTGTTAGTTGG+TGG | - | chr4_4:50806963-50806982 | Msa0686360:five_prime_UTR | 40.0% |
| CGGATGTAAAATCCATCTTC+TGG | + | chr4_4:50807077-50807096 | None:intergenic | 40.0% | |
| !! | GATGGATTTTACATCCGATC+AGG | - | chr4_4:50807080-50807099 | Msa0686360:intron | 40.0% |
| AATGGAGAAAGCGACAATAG+AGG | - | chr4_4:50807115-50807134 | Msa0686360:intron | 40.0% | |
| TGTCATATAAGTGGCTAGCA+TGG | - | chr4_4:50807145-50807164 | Msa0686360:five_prime_UTR | 40.0% | |
| TGGAAATGGTAACTGAAGGC+TGG | + | chr4_4:50803132-50803151 | None:intergenic | 45.0% | |
| CTTGGTGAGAGAATCAAACG+GGG | - | chr4_4:50803567-50803586 | Msa0686360:intron | 45.0% | |
| CGGAAAAATCTTGGAAAGCG+CGG | - | chr4_4:50803796-50803815 | Msa0686360:intron | 45.0% | |
| !!! | TGCGGCCATAATTTTGGTTG+TGG | - | chr4_4:50803869-50803888 | Msa0686360:intron | 45.0% |
| GTGTCAACTTCAGACCTTTC+AGG | - | chr4_4:50804132-50804151 | Msa0686360:intron | 45.0% | |
| GTTGCTTCCATTGTATTGGG+AGG | - | chr4_4:50804193-50804212 | Msa0686360:CDS | 45.0% | |
| AGAGGAAAAAGGTGAACACC+AGG | + | chr4_4:50804223-50804242 | None:intergenic | 45.0% | |
| ! | GTAGCAGCTCTTTTGGTAAG+AGG | + | chr4_4:50804241-50804260 | None:intergenic | 45.0% |
| ! | TCTTGGACAGGCATCAGTTT+TGG | - | chr4_4:50804283-50804302 | Msa0686360:intron | 45.0% |
| !!! | ATTTTTCAGGTACCTGTCGG+TGG | - | chr4_4:50804337-50804356 | Msa0686360:intron | 45.0% |
| !!! | TTTTTCAGGTACCTGTCGGT+GGG | - | chr4_4:50804338-50804357 | Msa0686360:intron | 45.0% |
| AATAGGTGCGAGCAATGTGA+CGG | + | chr4_4:50804459-50804478 | None:intergenic | 45.0% | |
| ! | CACATTGCTCGCACCTATTT+TGG | - | chr4_4:50804460-50804479 | Msa0686360:intron | 45.0% |
| !! | GCTCGCACCTATTTTGGAAA+TGG | - | chr4_4:50804466-50804485 | Msa0686360:intron | 45.0% |
| ! | CTTTGGAGATGGATATGTGG+AGG | - | chr4_4:50804495-50804514 | Msa0686360:intron | 45.0% |
| !! | GAACACACGATAGGTTTTGG+CGG | - | chr4_4:50804816-50804835 | Msa0686360:intron | 45.0% |
| ! | CAATTTTTCCCAGCTTCTCC+TGG | + | chr4_4:50804853-50804872 | None:intergenic | 45.0% |
| CAGGAGAAGCTGGGAAAAAT+TGG | - | chr4_4:50804851-50804870 | Msa0686360:intron | 45.0% | |
| ! | ACAGTATCATGTGCTGCTGT+TGG | - | chr4_4:50805124-50805143 | Msa0686360:CDS | 45.0% |
| !! | TCTGCTTTTCAGTCGTGCAT+CGG | - | chr4_4:50805243-50805262 | Msa0686360:intron | 45.0% |
| TTCAGTCGTGCATCGGATTA+TGG | - | chr4_4:50805250-50805269 | Msa0686360:intron | 45.0% | |
| TACACGAACATGTTCCCAAG+AGG | + | chr4_4:50805402-50805421 | None:intergenic | 45.0% | |
| TCTTGGGAACATGTTCGTGT+AGG | - | chr4_4:50805401-50805420 | Msa0686360:intron | 45.0% | |
| GGAGACTATTGGGAAGACAT+TGG | - | chr4_4:50805989-50806008 | Msa0686360:intron | 45.0% | |
| ATGGCTCTTACTGAAGAGGT+AGG | - | chr4_4:50806040-50806059 | Msa0686360:intron | 45.0% | |
| GTGGATGCAATAATCTCGCA+TGG | - | chr4_4:50806337-50806356 | Msa0686360:intron | 45.0% | |
| CGTTCTCGGCCAAGAAATTA+TGG | + | chr4_4:50806450-50806469 | None:intergenic | 45.0% | |
| !! | CCTTGGTTCTATAGCGTTCT+CGG | + | chr4_4:50806464-50806483 | None:intergenic | 45.0% |
| GAGATCTAGTGCAGCTAATG+CGG | - | chr4_4:50806533-50806552 | Msa0686360:intron | 45.0% | |
| ! | AAGCCTTAGGGTTTTCTCAG+CGG | + | chr4_4:50806574-50806593 | None:intergenic | 45.0% |
| AATTGCTTCTGAGCTAGCAC+AGG | - | chr4_4:50806694-50806713 | Msa0686360:intron | 45.0% | |
| ATTGCTTCTGAGCTAGCACA+GGG | - | chr4_4:50806695-50806714 | Msa0686360:intron | 45.0% | |
| CACAGGGAAAGGTTCCTATT+GGG | - | chr4_4:50806711-50806730 | Msa0686360:CDS | 45.0% | |
| GGAAAGGTTCCTATTGGGAT+TGG | - | chr4_4:50806716-50806735 | Msa0686360:CDS | 45.0% | |
| GATGACATCTTTCCCAATCC+TGG | + | chr4_4:50806886-50806905 | None:intergenic | 45.0% | |
| GAAGCAGATAGACCAGAAGA+TGG | - | chr4_4:50807062-50807081 | Msa0686360:intron | 45.0% | |
| GAGAAAGCGACAATAGAGGA+CGG | - | chr4_4:50807119-50807138 | Msa0686360:intron | 45.0% | |
| GGCCTTCTTAACCCTCTCTT+TGG | + | chr4_4:50803643-50803662 | None:intergenic | 50.0% | |
| AGGGTTAAGAAGGCCAAACC+TGG | - | chr4_4:50803648-50803667 | Msa0686360:intron | 50.0% | |
| AGCAGACACAACACCAGGTT+TGG | + | chr4_4:50803664-50803683 | None:intergenic | 50.0% | |
| AGAACAGCAGACACAACACC+AGG | + | chr4_4:50803669-50803688 | None:intergenic | 50.0% | |
| TGCAGCCACATCAGCTATAG+TGG | + | chr4_4:50803928-50803947 | None:intergenic | 50.0% | |
| GCTTCCATTGTATTGGGAGG+AGG | - | chr4_4:50804196-50804215 | Msa0686360:CDS | 50.0% | |
| AGGACCTCCTCCCAATACAA+TGG | + | chr4_4:50804203-50804222 | None:intergenic | 50.0% | |
| ATTGTATTGGGAGGAGGTCC+TGG | - | chr4_4:50804202-50804221 | Msa0686360:CDS | 50.0% | |
| ! | AGCAGGTGTAGCAGCTCTTT+TGG | + | chr4_4:50804248-50804267 | None:intergenic | 50.0% |
| GGATTACATGGACCTTGTGC+AGG | - | chr4_4:50804984-50805003 | Msa0686360:intron | 50.0% | |
| ACGTGAACGTTCACCCACAA+TGG | + | chr4_4:50806395-50806414 | None:intergenic | 50.0% | |
| TGTGGGTGAACGTTCACGTT+TGG | - | chr4_4:50806396-50806415 | Msa0686360:intron | 50.0% | |
| CCGAGAACGCTATAGAACCA+AGG | - | chr4_4:50806461-50806480 | Msa0686360:intron | 50.0% | |
| TGACCGCTGAGAAAACCCTA+AGG | - | chr4_4:50806568-50806587 | Msa0686360:intron | 50.0% | |
| GCTGAGAAAACCCTAAGGCT+TGG | - | chr4_4:50806573-50806592 | Msa0686360:intron | 50.0% | |
| TTCTGAGCTAGCACAGGGAA+AGG | - | chr4_4:50806700-50806719 | Msa0686360:intron | 50.0% | |
| GCACAGGGAAAGGTTCCTAT+TGG | - | chr4_4:50806710-50806729 | Msa0686360:CDS | 50.0% | |
| GGACGGCACTGTCATATAAG+TGG | - | chr4_4:50807136-50807155 | Msa0686360:five_prime_UTR | 50.0% | |
| TTTCCCCATCCCTCTCGTGA+AGG | - | chr4_4:50803027-50803046 | Msa0686360:three_prime_UTR | 55.0% | |
| AGAGCCTTCACGAGAGGGAT+GGG | + | chr4_4:50803034-50803053 | None:intergenic | 55.0% | |
| AGCTGATGTGGCTGCAACTG+CGG | - | chr4_4:50803932-50803951 | Msa0686360:intron | 55.0% | |
| ! | TACCTGTCGGTGGGTGCTAT+AGG | - | chr4_4:50804347-50804366 | Msa0686360:intron | 55.0% |
| ACTCAAACGCCAGGAGAAGC+TGG | - | chr4_4:50804841-50804860 | Msa0686360:intron | 55.0% | |
| CTCAAACGCCAGGAGAAGCT+GGG | - | chr4_4:50804842-50804861 | Msa0686360:intron | 55.0% | |
| !! | CATGTGCTGCTGTTGGTGAC+AGG | - | chr4_4:50805131-50805150 | Msa0686360:CDS | 55.0% |
| ! | GGATTACGGTGTTGAGCTCC+AGG | - | chr4_4:50806417-50806436 | Msa0686360:intron | 55.0% |
| TGTACGCGCGCAGAGTAGAA+GGG | - | chr4_4:50807284-50807303 | Msa0686360:five_prime_UTR | 55.0% | |
| GAGCCTTCACGAGAGGGATG+GGG | + | chr4_4:50803033-50803052 | None:intergenic | 60.0% | |
| CAGAGCCTTCACGAGAGGGA+TGG | + | chr4_4:50803035-50803054 | None:intergenic | 60.0% | |
| CATCCCTCTCGTGAAGGCTC+TGG | - | chr4_4:50803033-50803052 | Msa0686360:three_prime_UTR | 60.0% | |
| GAGCCAGAGCCTTCACGAGA+GGG | + | chr4_4:50803039-50803058 | None:intergenic | 60.0% | |
| TGAGCCAGAGCCTTCACGAG+AGG | + | chr4_4:50803040-50803059 | None:intergenic | 60.0% | |
| TCATGTTGAGGGGTCCGTCG+TGG | - | chr4_4:50803727-50803746 | Msa0686360:CDS | 60.0% | |
| AGCCTATAGCACCCACCGAC+AGG | + | chr4_4:50804352-50804371 | None:intergenic | 60.0% | |
| TTGGCGGCTACTCAAACGCC+AGG | - | chr4_4:50804832-50804851 | Msa0686360:intron | 60.0% | |
| AGGGAACAGCGGATGCTGTG+AGG | - | chr4_4:50804878-50804897 | Msa0686360:intron | 60.0% | |
| GTGTACGCGCGCAGAGTAGA+AGG | - | chr4_4:50807283-50807302 | Msa0686360:five_prime_UTR | 60.0% | |
| TGTGGCTGCAACTGCGGTCG+CGG | - | chr4_4:50803938-50803957 | Msa0686360:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 50803023 | 50807400 | 50803023 | ID=Msa0686360;Name=Msa0686360 |
| chr4_4 | mRNA | 50803023 | 50807400 | 50803023 | ID=Msa0686360-mRNA-1;Parent=Msa0686360;Name=Msa0686360-mRNA-1;_AED=0.15;_eAED=0.15;_QI=329|0.84|0.78|1|0.92|0.85|14|246|533 |
| chr4_4 | exon | 50803023 | 50803370 | 50803023 | ID=Msa0686360-mRNA-1:exon:13065;Parent=Msa0686360-mRNA-1 |
| chr4_4 | exon | 50803503 | 50803563 | 50803503 | ID=Msa0686360-mRNA-1:exon:13064;Parent=Msa0686360-mRNA-1 |
| chr4_4 | exon | 50803667 | 50803773 | 50803667 | ID=Msa0686360-mRNA-1:exon:13063;Parent=Msa0686360-mRNA-1 |
| chr4_4 | exon | 50803985 | 50804089 | 50803985 | ID=Msa0686360-mRNA-1:exon:13062;Parent=Msa0686360-mRNA-1 |
| chr4_4 | exon | 50804182 | 50804268 | 50804182 | ID=Msa0686360-mRNA-1:exon:13061;Parent=Msa0686360-mRNA-1 |
| chr4_4 | exon | 50804366 | 50804446 | 50804366 | ID=Msa0686360-mRNA-1:exon:13060;Parent=Msa0686360-mRNA-1 |
| chr4_4 | exon | 50804545 | 50804757 | 50804545 | ID=Msa0686360-mRNA-1:exon:13059;Parent=Msa0686360-mRNA-1 |
| chr4_4 | exon | 50805075 | 50805168 | 50805075 | ID=Msa0686360-mRNA-1:exon:13058;Parent=Msa0686360-mRNA-1 |
| chr4_4 | exon | 50805271 | 50805326 | 50805271 | ID=Msa0686360-mRNA-1:exon:13057;Parent=Msa0686360-mRNA-1 |
| chr4_4 | exon | 50805418 | 50805594 | 50805418 | ID=Msa0686360-mRNA-1:exon:13056;Parent=Msa0686360-mRNA-1 |
| chr4_4 | exon | 50805907 | 50805987 | 50805907 | ID=Msa0686360-mRNA-1:exon:13055;Parent=Msa0686360-mRNA-1 |
| chr4_4 | exon | 50806078 | 50806278 | 50806078 | ID=Msa0686360-mRNA-1:exon:13054;Parent=Msa0686360-mRNA-1 |
| chr4_4 | exon | 50806707 | 50807001 | 50806707 | ID=Msa0686360-mRNA-1:exon:13053;Parent=Msa0686360-mRNA-1 |
| chr4_4 | exon | 50807130 | 50807400 | 50807130 | ID=Msa0686360-mRNA-1:exon:13052;Parent=Msa0686360-mRNA-1 |
| chr4_4 | five_prime_UTR | 50807130 | 50807400 | 50807130 | ID=Msa0686360-mRNA-1:five_prime_utr;Parent=Msa0686360-mRNA-1 |
| chr4_4 | five_prime_UTR | 50806944 | 50807001 | 50806944 | ID=Msa0686360-mRNA-1:five_prime_utr;Parent=Msa0686360-mRNA-1 |
| chr4_4 | CDS | 50806707 | 50806943 | 50806707 | ID=Msa0686360-mRNA-1:cds;Parent=Msa0686360-mRNA-1 |
| chr4_4 | CDS | 50806078 | 50806278 | 50806078 | ID=Msa0686360-mRNA-1:cds;Parent=Msa0686360-mRNA-1 |
| chr4_4 | CDS | 50805907 | 50805987 | 50805907 | ID=Msa0686360-mRNA-1:cds;Parent=Msa0686360-mRNA-1 |
| chr4_4 | CDS | 50805418 | 50805594 | 50805418 | ID=Msa0686360-mRNA-1:cds;Parent=Msa0686360-mRNA-1 |
| chr4_4 | CDS | 50805271 | 50805326 | 50805271 | ID=Msa0686360-mRNA-1:cds;Parent=Msa0686360-mRNA-1 |
| chr4_4 | CDS | 50805075 | 50805168 | 50805075 | ID=Msa0686360-mRNA-1:cds;Parent=Msa0686360-mRNA-1 |
| chr4_4 | CDS | 50804545 | 50804757 | 50804545 | ID=Msa0686360-mRNA-1:cds;Parent=Msa0686360-mRNA-1 |
| chr4_4 | CDS | 50804366 | 50804446 | 50804366 | ID=Msa0686360-mRNA-1:cds;Parent=Msa0686360-mRNA-1 |
| chr4_4 | CDS | 50804182 | 50804268 | 50804182 | ID=Msa0686360-mRNA-1:cds;Parent=Msa0686360-mRNA-1 |
| chr4_4 | CDS | 50803985 | 50804089 | 50803985 | ID=Msa0686360-mRNA-1:cds;Parent=Msa0686360-mRNA-1 |
| chr4_4 | CDS | 50803667 | 50803773 | 50803667 | ID=Msa0686360-mRNA-1:cds;Parent=Msa0686360-mRNA-1 |
| chr4_4 | CDS | 50803503 | 50803563 | 50803503 | ID=Msa0686360-mRNA-1:cds;Parent=Msa0686360-mRNA-1 |
| chr4_4 | CDS | 50803269 | 50803370 | 50803269 | ID=Msa0686360-mRNA-1:cds;Parent=Msa0686360-mRNA-1 |
| chr4_4 | three_prime_UTR | 50803023 | 50803268 | 50803023 | ID=Msa0686360-mRNA-1:three_prime_utr;Parent=Msa0686360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
