Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646780 | XP_003606943.1 | 94.600 | 537 | 20 | 1 | 1 | 537 | 1 | 528 | 0.0 | 1047 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646780 | sp|Q00081|GLGL1_SOLTU | 76.360 | 478 | 104 | 1 | 60 | 537 | 2 | 470 | 0.0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0605750 | Msa0646780 | 0.888985 | 3.630226e-73 | -8.615850e-47 |
| Msa0646780 | Msa0686360 | 0.906627 | 1.212657e-80 | -8.615850e-47 |
| Msa0140760 | Msa0646780 | 0.841103 | 5.819229e-58 | -8.615850e-47 |
| Msa0196370 | Msa0646780 | 0.824698 | 7.011274e-54 | -8.615850e-47 |
| Msa0238260 | Msa0646780 | 0.859466 | 4.058000e-63 | -8.615850e-47 |
| Msa0238280 | Msa0646780 | 0.805632 | 1.215284e-49 | -8.615850e-47 |
| Msa0385920 | Msa0646780 | 0.844207 | 8.723044e-59 | -8.615850e-47 |
| Msa0479740 | Msa0646780 | 0.868814 | 4.935188e-66 | -8.615850e-47 |
| Msa0275690 | Msa0646780 | 0.838181 | 3.349406e-57 | -8.615850e-47 |
| Msa0316270 | Msa0646780 | 0.834904 | 2.288189e-56 | -8.615850e-47 |
| Msa0316280 | Msa0646780 | 0.871556 | 6.245604e-67 | -8.615850e-47 |
| Msa0523360 | Msa0646780 | 0.851781 | 7.095668e-61 | -8.615850e-47 |
| Msa0550330 | Msa0646780 | 0.988978 | 3.456423e-176 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646780 | MtrunA17_Chr4g0035171 | 94.600 | 537 | 20 | 1 | 1 | 537 | 1 | 528 | 0.0 | 1047 |
| Msa0646780 | MtrunA17_Chr3g0141761 | 67.836 | 513 | 145 | 5 | 29 | 537 | 34 | 530 | 0.0 | 702 |
| Msa0646780 | MtrunA17_Chr4g0074531 | 63.425 | 473 | 160 | 3 | 66 | 537 | 61 | 521 | 0.0 | 647 |
| Msa0646780 | MtrunA17_Chr7g0271011 | 64.592 | 466 | 147 | 3 | 81 | 537 | 80 | 536 | 0.0 | 628 |
| Msa0646780 | MtrunA17_Chr3g0144741 | 73.950 | 357 | 74 | 3 | 1 | 357 | 1 | 338 | 0.0 | 516 |
| Msa0646780 | MtrunA17_Chr5g0447341 | 51.501 | 433 | 193 | 6 | 108 | 537 | 97 | 515 | 5.69e-159 | 462 |
| Msa0646780 | MtrunA17_Chr3g0120471 | 51.963 | 433 | 188 | 7 | 108 | 537 | 96 | 511 | 4.94e-158 | 460 |
| Msa0646780 | MtrunA17_Chr0c30g0494071 | 48.240 | 483 | 127 | 10 | 90 | 537 | 21 | 415 | 1.15e-144 | 422 |
| Msa0646780 | MtrunA17_Chr3g0144731 | 86.624 | 157 | 21 | 0 | 381 | 537 | 5 | 161 | 1.71e-96 | 290 |
| Msa0646780 | MtrunA17_Chr4g0077071 | 41.250 | 80 | 46 | 1 | 370 | 448 | 2 | 81 | 2.63e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646780 | AT4G39210.2 | 69.907 | 535 | 144 | 4 | 4 | 537 | 3 | 521 | 0.0 | 776 |
| Msa0646780 | AT4G39210.1 | 69.907 | 535 | 144 | 4 | 4 | 537 | 3 | 521 | 0.0 | 776 |
| Msa0646780 | AT2G21590.2 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 735 |
| Msa0646780 | AT2G21590.3 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 735 |
| Msa0646780 | AT2G21590.5 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 735 |
| Msa0646780 | AT2G21590.4 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 735 |
| Msa0646780 | AT2G21590.7 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 735 |
| Msa0646780 | AT2G21590.1 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 735 |
| Msa0646780 | AT2G21590.6 | 70.955 | 513 | 134 | 3 | 26 | 537 | 25 | 523 | 0.0 | 735 |
| Msa0646780 | AT1G27680.1 | 66.602 | 512 | 158 | 4 | 23 | 533 | 15 | 514 | 0.0 | 707 |
| Msa0646780 | AT5G19220.1 | 60.729 | 494 | 184 | 2 | 44 | 537 | 39 | 522 | 0.0 | 645 |
| Msa0646780 | AT5G48300.1 | 52.425 | 433 | 189 | 6 | 108 | 537 | 102 | 520 | 2.18e-161 | 469 |
| Msa0646780 | AT1G05610.1 | 39.911 | 451 | 237 | 10 | 94 | 537 | 53 | 476 | 5.12e-107 | 328 |
| Msa0646780 | AT1G05610.2 | 39.648 | 454 | 240 | 10 | 94 | 537 | 53 | 482 | 6.48e-107 | 328 |
Find 147 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTGCTCGCACCTATTT+TGG | 0.081433 | 4_3:-52622727 | Msa0646780:CDS |
| ATTCTCAATGTTAGTGTTCT+TGG | 0.168119 | 4_3:+52622355 | None:intergenic |
| CAAATTTGCTATGTGGTTAT+TGG | 0.203916 | 4_3:+52623693 | None:intergenic |
| GTGTCAACTTCAGACCTTTC+AGG | 0.205906 | 4_3:-52623070 | Msa0646780:intron |
| ACACATATATATAAACAAAA+AGG | 0.207039 | 4_3:+52619960 | None:intergenic |
| GTTGATGCCATTTCCAAAAT+AGG | 0.213388 | 4_3:+52622714 | None:intergenic |
| GTCTTCTTGTGTGAACTTTA+AGG | 0.228546 | 4_3:-52623716 | Msa0646780:CDS |
| GAGAGTGAGATTTAGATTAT+TGG | 0.234363 | 4_3:+52624053 | None:intergenic |
| TCTGTTCTCAAAGTAATCTT+TGG | 0.235135 | 4_3:+52620027 | None:intergenic |
| GTCACCATATATTGCATCTA+TGG | 0.271084 | 4_3:-52621533 | Msa0646780:CDS |
| GGCCTTCTTAACCCTCTCTT+TGG | 0.286759 | 4_3:+52623561 | None:intergenic |
| AAATGTTGCTTCCATTGTAT+TGG | 0.295734 | 4_3:-52623013 | Msa0646780:CDS |
| TGCTAGCTCAGAAGCAATTT+CGG | 0.314259 | 4_3:+52620544 | None:intergenic |
| AGCAGGTGTAGCAGCTCTTT+TGG | 0.314559 | 4_3:+52622957 | None:intergenic |
| GATGGAATTCCAAATGGAAT+TGG | 0.315379 | 4_3:+52624003 | None:intergenic |
| AATGTTGCTTCCATTGTATT+GGG | 0.317534 | 4_3:-52623012 | Msa0646780:CDS |
| TTTGATAGACAAGTAATTGA+TGG | 0.319357 | 4_3:+52623985 | None:intergenic |
| GAACGTTCACGTTTGGATTA+CGG | 0.324212 | 4_3:-52620862 | Msa0646780:CDS |
| GTGTACGCGCGCAGAGTAGA+AGG | 0.324381 | 4_3:-52619929 | Msa0646780:three_prime_UTR |
| TTCAGTCGTGCATCGGATTA+CGG | 0.329466 | 4_3:-52622012 | Msa0646780:intron |
| TGTCAAACCAAGATGCATTA+AGG | 0.343976 | 4_3:-52621555 | Msa0646780:CDS |
| CTCAGAAGCAATTTCGGATT+CGG | 0.345496 | 4_3:+52620550 | None:intergenic |
| TTTGTTGGTGGTAAGAATCT+TGG | 0.351797 | 4_3:+52621062 | None:intergenic |
| CTGTTACTTCCAATCCCAAT+AGG | 0.370914 | 4_3:+52620509 | None:intergenic |
| GCACAGGGAAAGGTTCCTAT+TGG | 0.371034 | 4_3:-52620524 | Msa0646780:CDS |
| GAATCTTGGAGATGTGAAAA+TGG | 0.376696 | 4_3:+52621076 | None:intergenic |
| CTGCATTTATCAATCTTTGT+TGG | 0.377402 | 4_3:+52621047 | None:intergenic |
| TACCTGTTGGTGGGTGCTAT+AGG | 0.383651 | 4_3:-52622840 | Msa0646780:CDS |
| TCATATATCCCAATTCCATT+TGG | 0.389918 | 4_3:-52624012 | Msa0646780:five_prime_UTR |
| TGTGGGTGAACGTTCACGTT+TGG | 0.391042 | 4_3:-52620869 | Msa0646780:CDS |
| TTTGGAAATGGCATCAACTT+TGG | 0.391193 | 4_3:-52622709 | Msa0646780:CDS |
| ACTCCCATAGATGCAATATA+TGG | 0.392783 | 4_3:+52621529 | None:intergenic |
| GATTTCAGATCCAAAGTCAT+TGG | 0.397964 | 4_3:+52621450 | None:intergenic |
| CGGATGTAAAATCCATCTTC+TGG | 0.403798 | 4_3:+52620138 | None:intergenic |
| AGCAGACACAACACCAGGTT+TGG | 0.410213 | 4_3:+52623540 | None:intergenic |
| CATTGAGAATGTAATAATCT+TGG | 0.411542 | 4_3:-52622342 | Msa0646780:CDS |
| CATCCCTCTCGTGAAGGCTC+TGG | 0.412851 | 4_3:-52624169 | Msa0646780:five_prime_UTR |
| ACTCAAACGCCAGGAGAAGC+TGG | 0.413697 | 4_3:-52622440 | Msa0646780:CDS |
| ATTGTATTGGGAGGAGGTCC+TGG | 0.415190 | 4_3:-52623000 | Msa0646780:CDS |
| CACAGGGAAAGGTTCCTATT+GGG | 0.422057 | 4_3:-52620523 | Msa0646780:CDS |
| GGATTACGGTGTTGAGCTCC+AGG | 0.426885 | 4_3:-52620848 | Msa0646780:intron |
| AATCATTCCTGCATCTGTTA+AGG | 0.427773 | 4_3:-52621431 | Msa0646780:CDS |
| GCAATTTACATGGGTATTTG+AGG | 0.429868 | 4_3:-52622381 | Msa0646780:CDS |
| AGCCTATAGCACCCACCAAC+AGG | 0.430792 | 4_3:+52622838 | None:intergenic |
| AAATGATGCCGTTGAGACTA+AGG | 0.434380 | 4_3:-52623506 | Msa0646780:intron |
| GAGATTTAGATTATTGGAAA+TGG | 0.434389 | 4_3:+52624059 | None:intergenic |
| ATGGAATTCCAAATGGAATT+GGG | 0.435541 | 4_3:+52624004 | None:intergenic |
| AAGCAATTTCGGATTCGGTT+TGG | 0.438840 | 4_3:+52620555 | None:intergenic |
| TCCTTGGATGATTAATCAGT+TGG | 0.439153 | 4_3:-52623599 | Msa0646780:CDS |
| ATGGTGACCTTAATGCATCT+TGG | 0.439664 | 4_3:+52621548 | None:intergenic |
| CACATAAATAAAATGATTGA+AGG | 0.440390 | 4_3:-52619844 | Msa0646780:three_prime_UTR |
| TTTACAGGACACTGTAATGA+TGG | 0.445727 | 4_3:-52620591 | Msa0646780:intron |
| GGAAAGGTTCCTATTGGGAT+TGG | 0.456229 | 4_3:-52620518 | Msa0646780:CDS |
| ATTGACAAGAATGCCAGGAT+TGG | 0.456643 | 4_3:-52620342 | Msa0646780:CDS |
| CTGTTGATACAGTTGCTCAT+TGG | 0.456942 | 4_3:+52622805 | None:intergenic |
| GCTTCCATTGTATTGGGAGG+AGG | 0.457513 | 4_3:-52623006 | Msa0646780:CDS |
| AGATCCAAAGTCATTGGATG+TGG | 0.463757 | 4_3:+52621456 | None:intergenic |
| TTTGGTTTCTCTATTGTACA+TGG | 0.464532 | 4_3:+52619986 | None:intergenic |
| CAACAAAGATTGATAAATGC+AGG | 0.467155 | 4_3:-52621046 | Msa0646780:CDS |
| TTGCATTCCTTAACAGATGC+AGG | 0.468552 | 4_3:+52621424 | None:intergenic |
| TTGACAAGAATGCCAGGATT+GGG | 0.469631 | 4_3:-52620341 | Msa0646780:CDS |
| GATTTAAGATCAGCACCCTT+AGG | 0.470111 | 4_3:+52621940 | None:intergenic |
| TTTAATTGCGAGTGTAAGAA+AGG | 0.472458 | 4_3:+52623941 | None:intergenic |
| TTGGAAGTAACAGCAAAATC+AGG | 0.473432 | 4_3:-52620499 | Msa0646780:intron |
| ATCAGGAATCACAATTGTAA+TGG | 0.475871 | 4_3:-52620115 | Msa0646780:CDS |
| CATTTATCAATCTTTGTTGG+TGG | 0.476162 | 4_3:+52621050 | None:intergenic |
| GTAATTGATGGAATTCCAAA+TGG | 0.479083 | 4_3:+52623997 | None:intergenic |
| ATAACCACATAGCAAATTTG+AGG | 0.481318 | 4_3:-52623690 | Msa0646780:CDS |
| GGGTGCTGATCTTAAATCAA+TGG | 0.482192 | 4_3:-52621935 | Msa0646780:intron |
| AGAGCCTTCACGAGAGGGAT+GGG | 0.485393 | 4_3:+52624171 | None:intergenic |
| TGTCATATAAGTGGCTAGCT+TGG | 0.485547 | 4_3:-52620067 | Msa0646780:exon |
| AACCAAAGAGAGGGTTAAGA+AGG | 0.486759 | 4_3:-52623563 | Msa0646780:CDS |
| GTTGTACACTACATTCTCTA+AGG | 0.489282 | 4_3:+52620899 | None:intergenic |
| TATCCCACATCCAATGACTT+TGG | 0.491448 | 4_3:-52621460 | Msa0646780:CDS |
| ATGCTGTGAGGCAATTTACA+TGG | 0.492795 | 4_3:-52622391 | Msa0646780:CDS |
| CTTTCCTCAAATTTGCTATG+TGG | 0.493197 | 4_3:+52623686 | None:intergenic |
| GGGGTGTGAATTATAGTCCT+TGG | 0.503061 | 4_3:-52623615 | Msa0646780:CDS |
| TGGAAATGGTAACTGAAGGC+TGG | 0.504066 | 4_3:+52624073 | None:intergenic |
| GATGTGAAAATGGGTGTCTT+GGG | 0.504166 | 4_3:+52621086 | None:intergenic |
| AGATGTGAAAATGGGTGTCT+TGG | 0.510373 | 4_3:+52621085 | None:intergenic |
| CAGAGCCTTCACGAGAGGGA+TGG | 0.511936 | 4_3:+52624170 | None:intergenic |
| CATGTGCTGCTGTTGGTGAC+AGG | 0.513782 | 4_3:-52622150 | Msa0646780:intron |
| GATGACATCTTTCCCAATCC+TGG | 0.514030 | 4_3:+52620329 | None:intergenic |
| CCTTGGATGATTAATCAGTT+GGG | 0.517935 | 4_3:-52623598 | Msa0646780:CDS |
| AATCTTGGAGATGTGAAAAT+GGG | 0.520261 | 4_3:+52621077 | None:intergenic |
| TTTCTTGGTGAGAGAATCAA+AGG | 0.520401 | 4_3:-52623637 | Msa0646780:CDS |
| AAGATTACTTTGAGAACAGA+AGG | 0.526225 | 4_3:-52620024 | Msa0646780:three_prime_UTR |
| TTGGCGGCTACTCAAACGCC+AGG | 0.530303 | 4_3:-52622449 | Msa0646780:CDS |
| GAAGCAGATAGACCAGAAGA+TGG | 0.532366 | 4_3:-52620150 | Msa0646780:CDS |
| AATTGCTTCTGAGCTAGCAC+AGG | 0.540855 | 4_3:-52620540 | Msa0646780:CDS |
| TCACCATATATTGCATCTAT+GGG | 0.541411 | 4_3:-52621532 | Msa0646780:CDS |
| AATGGCATCAACTTTGGAGA+TGG | 0.542455 | 4_3:-52622703 | Msa0646780:CDS |
| GGACTACATGGACCTTGTGC+AGG | 0.543873 | 4_3:-52622297 | Msa0646780:intron |
| TACTCAAGCTTCTAAAATGG+AGG | 0.545196 | 4_3:-52621483 | Msa0646780:CDS |
| GGATCATAAAATTTGAACAA+TGG | 0.546619 | 4_3:+52621107 | None:intergenic |
| TCTATACAGAATGGACTACA+TGG | 0.550347 | 4_3:-52622309 | Msa0646780:CDS |
| GGAGACTATTGGGAAGACAT+TGG | 0.550910 | 4_3:-52621276 | Msa0646780:CDS |
| CTCAAACGCCAGGAGAAGCT+GGG | 0.551829 | 4_3:-52622439 | Msa0646780:CDS |
| GTATAATTGACAAGAATGCC+AGG | 0.558591 | 4_3:-52620347 | Msa0646780:CDS |
| TTCTGAGCTAGCACAGGGAA+AGG | 0.561514 | 4_3:-52620534 | Msa0646780:CDS |
| CATAAATGATGGAACCTGAA+AGG | 0.567480 | 4_3:+52623056 | None:intergenic |
| AATGGAGAAAGCGACAATAG+AGG | 0.575600 | 4_3:-52620097 | Msa0646780:CDS |
| GGACAGCACTGTCATATAAG+TGG | 0.576428 | 4_3:-52620076 | Msa0646780:exon |
| AGGGTTAAGAAGGCCAAACC+TGG | 0.576523 | 4_3:-52623553 | Msa0646780:CDS |
| TTACAGGACACTGTAATGAT+GGG | 0.576561 | 4_3:-52620590 | Msa0646780:intron |
| CCCAACTGATTAATCATCCA+AGG | 0.580151 | 4_3:+52623598 | None:intergenic |
| TTACAATTGTGATTCCTGAT+CGG | 0.588358 | 4_3:+52620118 | None:intergenic |
| GAGCCTTCACGAGAGGGATG+GGG | 0.589768 | 4_3:+52624172 | None:intergenic |
| TTTCCCCATCCCTCTCGTGA+AGG | 0.589980 | 4_3:-52624175 | Msa0646780:five_prime_UTR |
| GAGAATGTAATAATCTTGGC+TGG | 0.593829 | 4_3:-52622338 | Msa0646780:CDS |
| AGTGTACAACACTCCATTGT+GGG | 0.594262 | 4_3:-52620886 | Msa0646780:CDS |
| CAACTTTGGAGATGGATATG+TGG | 0.599466 | 4_3:-52622695 | Msa0646780:CDS |
| ACAGTATCATGTGCTGCTGT+TGG | 0.599712 | 4_3:-52622157 | Msa0646780:CDS |
| TAATATGGCTCTTACTGAAG+AGG | 0.599834 | 4_3:-52621229 | Msa0646780:intron |
| ACGTGAACGTTCACCCACAA+TGG | 0.600506 | 4_3:+52620873 | None:intergenic |
| AACAAAGATTGATAAATGCA+GGG | 0.604087 | 4_3:-52621045 | Msa0646780:intron |
| GAGCCAGAGCCTTCACGAGA+GGG | 0.604639 | 4_3:+52624166 | None:intergenic |
| TGTACGCGCGCAGAGTAGAA+GGG | 0.606979 | 4_3:-52619928 | Msa0646780:three_prime_UTR |
| TCAGCTTACCTTAGTCTCAA+CGG | 0.607553 | 4_3:+52623498 | None:intergenic |
| GTTGCTTCCATTGTATTGGG+AGG | 0.607715 | 4_3:-52623009 | Msa0646780:CDS |
| TAAGTTTGAGAACCAAAGAG+AGG | 0.613319 | 4_3:-52623573 | Msa0646780:CDS |
| TGGTGATCATCTATACAGAA+TGG | 0.614075 | 4_3:-52622318 | Msa0646780:CDS |
| ACAAGAAGACGCCATTGTGA+TGG | 0.614518 | 4_3:+52623729 | None:intergenic |
| TTCTTGGTGAGAGAATCAAA+GGG | 0.614967 | 4_3:-52623636 | Msa0646780:CDS |
| AGGACCTCCTCCCAATACAA+TGG | 0.628390 | 4_3:+52623002 | None:intergenic |
| GATCCAAAGTCATTGGATGT+GGG | 0.628997 | 4_3:+52621457 | None:intergenic |
| AGAACAGCAGACACAACACC+AGG | 0.631071 | 4_3:+52623535 | None:intergenic |
| TGCTGTGAGGCAATTTACAT+GGG | 0.632280 | 4_3:-52622390 | Msa0646780:CDS |
| AAGTTTGAGAACCAAAGAGA+GGG | 0.633814 | 4_3:-52623572 | Msa0646780:CDS |
| TTATTGGAAATGGTAACTGA+AGG | 0.644751 | 4_3:+52624069 | None:intergenic |
| GAGTTGAATGTTGTACTACT+AGG | 0.647529 | 4_3:+52624126 | None:intergenic |
| CTTTGGAGATGGATATGTGG+AGG | 0.648283 | 4_3:-52622692 | Msa0646780:intron |
| TGAGCCAGAGCCTTCACGAG+AGG | 0.648560 | 4_3:+52624165 | None:intergenic |
| ATCGGATTACGGATTAGTCA+AGG | 0.648959 | 4_3:-52622001 | Msa0646780:CDS |
| AATAGGTGCGAGCAATGTGA+CGG | 0.649705 | 4_3:+52622731 | None:intergenic |
| TTAGTCAAGGTAGATAGCAG+AGG | 0.651808 | 4_3:-52621988 | Msa0646780:CDS |
| GTGGATGCAATAATCTCGCA+TGG | 0.664341 | 4_3:-52620928 | Msa0646780:CDS |
| TAGTGTACAACACTCCATTG+TGG | 0.667376 | 4_3:-52620887 | Msa0646780:CDS |
| ATTGCTTCTGAGCTAGCACA+GGG | 0.674782 | 4_3:-52620539 | Msa0646780:CDS |
| AAATTGGTTTCAAGGAACAG+CGG | 0.676116 | 4_3:-52622414 | Msa0646780:CDS |
| CTTGGTGAGAGAATCAAAGG+GGG | 0.681586 | 4_3:-52623634 | Msa0646780:CDS |
| AAGGAACAGCGGATGCTGTG+AGG | 0.682609 | 4_3:-52622403 | Msa0646780:CDS |
| AATCATTGAATACCTGCACA+AGG | 0.693249 | 4_3:+52622285 | None:intergenic |
| TTGAATGTTGTACTACTAGG+TGG | 0.693319 | 4_3:+52624129 | None:intergenic |
| ATGAGCAACTGTATCAACAG+TGG | 0.701758 | 4_3:-52622802 | Msa0646780:CDS |
| TTGATACATCACCATCACAA+TGG | 0.703868 | 4_3:-52623740 | Msa0646780:exon |
| TCTTGGTGAGAGAATCAAAG+GGG | 0.719796 | 4_3:-52623635 | Msa0646780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAGGAAAAATTTAA+AGG | + | chr4_3:52621906-52621925 | None:intergenic | 10.0% |
| !! | CAAAAAAACATATATAAAAA+AGG | + | chr4_3:52621919-52621938 | None:intergenic | 10.0% |
| !! | AAATATATTATGATCAAATT+AGG | + | chr4_3:52622366-52622385 | None:intergenic | 10.0% |
| !!! | AAAATTTTGTTTTAAATGTT+AGG | + | chr4_3:52623405-52623424 | None:intergenic | 10.0% |
| !!! | AATATTTTTCATCATGATAA+TGG | - | chr4_3:52620352-52620371 | Msa0646780:CDS | 15.0% |
| !!! | AAAAAATATTTTAACGCTTA+TGG | - | chr4_3:52620824-52620843 | Msa0646780:intron | 15.0% |
| !!! | CATAATATATTTATCTTTTC+TGG | - | chr4_3:52622374-52622393 | Msa0646780:CDS | 15.0% |
| !!! | CATTTAAAACAAAATTTTAC+AGG | - | chr4_3:52623407-52623426 | Msa0646780:intron | 15.0% |
| !! | AAAAGAAATATAAGGTAAAA+GGG | + | chr4_3:52623738-52623757 | None:intergenic | 15.0% |
| !! | TAAAAGAAATATAAGGTAAA+AGG | + | chr4_3:52623739-52623758 | None:intergenic | 15.0% |
| !! | TCAAATGTAAAAGAAATATA+AGG | + | chr4_3:52623746-52623765 | None:intergenic | 15.0% |
| !! | ACATATATATAAACAAAAAG+GGG | + | chr4_3:52624054-52624073 | None:intergenic | 15.0% |
| !! | CACATATATATAAACAAAAA+GGG | + | chr4_3:52624055-52624074 | None:intergenic | 15.0% |
| !! | ACACATATATATAAACAAAA+AGG | + | chr4_3:52624056-52624075 | None:intergenic | 15.0% |
| !! | AATGTTAATGAAGTAATGAA+TGG | + | chr4_3:52620123-52620142 | None:intergenic | 20.0% |
| !! | AAATTTAGCTACATAATATC+AGG | + | chr4_3:52620880-52620899 | None:intergenic | 20.0% |
| !! | TTTCATTATGTAATGTTACA+TGG | - | chr4_3:52621130-52621149 | Msa0646780:intron | 20.0% |
| !! | TTGAACTTTCATAAATGTAT+AGG | + | chr4_3:52622109-52622128 | None:intergenic | 20.0% |
| !! | TTTAACGAAATGTATTTGAA+AGG | - | chr4_3:52622229-52622248 | Msa0646780:intron | 20.0% |
| !! | TTAACGAAATGTATTTGAAA+GGG | - | chr4_3:52622230-52622249 | Msa0646780:intron | 20.0% |
| !!! | TTAAGTTTTTTTTTGGTAAC+AGG | + | chr4_3:52622290-52622309 | None:intergenic | 20.0% |
| !! | TTACCAAAAAAAAACTTAAG+AGG | - | chr4_3:52622291-52622310 | Msa0646780:intron | 20.0% |
| !! | TACCAAAAAAAAACTTAAGA+GGG | - | chr4_3:52622292-52622311 | Msa0646780:intron | 20.0% |
| !! | AAAAAAAATGCCTGAAAAAA+AGG | + | chr4_3:52622716-52622735 | None:intergenic | 20.0% |
| !!! | TTTTTTCAGGCATTTTTTTT+CGG | - | chr4_3:52622716-52622735 | Msa0646780:CDS | 20.0% |
| !!! | AATAATGTTAGTTTCATGAT+AGG | + | chr4_3:52622865-52622884 | None:intergenic | 20.0% |
| !! | AAAGAAATATAAGGTAAAAG+GGG | + | chr4_3:52623737-52623756 | None:intergenic | 20.0% |
| !! | CATATATATAAACAAAAAGG+GGG | + | chr4_3:52624053-52624072 | None:intergenic | 20.0% |
| !! | CACATAAATAAAATGATTGA+AGG | - | chr4_3:52624169-52624188 | Msa0646780:five_prime_UTR | 20.0% |
| ! | GAGATTTAGATTATTGGAAA+TGG | + | chr4_3:52619957-52619976 | None:intergenic | 25.0% |
| ! | TTTGATAGACAAGTAATTGA+TGG | + | chr4_3:52620031-52620050 | None:intergenic | 25.0% |
| !!! | TATAAAGGATTTTGAAGTCT+CGG | + | chr4_3:52620662-52620681 | None:intergenic | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+CGG | - | chr4_3:52620665-52620684 | Msa0646780:intron | 25.0% |
| ! | TGATTCTTATGTTCTTATTG+TGG | - | chr4_3:52620921-52620940 | Msa0646780:CDS | 25.0% |
| !! | GCTTTTATTCTCATAAATGA+TGG | + | chr4_3:52620971-52620990 | None:intergenic | 25.0% |
| !! | TGGTATTGTTTACATTTTTC+AGG | - | chr4_3:52621150-52621169 | Msa0646780:intron | 25.0% |
| ! | TATAAAGTAGCTTTCACATT+AGG | + | chr4_3:52621442-52621461 | None:intergenic | 25.0% |
| !! | AAATCAAACACAATAGGTTT+TGG | - | chr4_3:52621545-52621564 | Msa0646780:CDS | 25.0% |
| ! | CATTGAGAATGTAATAATCT+TGG | - | chr4_3:52621671-52621690 | Msa0646780:intron | 25.0% |
| ! | AGAAAACACTGAAAATGAAA+TGG | + | chr4_3:52621785-52621804 | None:intergenic | 25.0% |
| ! | ATCTTCATTACGTGAAAAAA+CGG | + | chr4_3:52622192-52622211 | None:intergenic | 25.0% |
| ! | AAATGTATTTGAAAGGGTAA+CGG | - | chr4_3:52622236-52622255 | Msa0646780:intron | 25.0% |
| !!! | AACCCTCTTAAGTTTTTTTT+TGG | + | chr4_3:52622297-52622316 | None:intergenic | 25.0% |
| ! | AAAACTTAAGAGGGTTATTA+TGG | - | chr4_3:52622301-52622320 | Msa0646780:CDS | 25.0% |
| ! | ATTAGGCAAAATACATTATG+CGG | + | chr4_3:52622349-52622368 | None:intergenic | 25.0% |
| !!! | TTTTACTCAAGCTTCTAAAA+TGG | - | chr4_3:52622527-52622546 | Msa0646780:intron | 25.0% |
| ! | AAAACAGTCTAACACTTTAA+AGG | + | chr4_3:52622643-52622662 | None:intergenic | 25.0% |
| !! | TTTTCATAATTACTCCTTTG+TGG | - | chr4_3:52622659-52622678 | Msa0646780:intron | 25.0% |
| !!! | ATTTTTTTTCGGAGACTATT+GGG | - | chr4_3:52622727-52622746 | Msa0646780:CDS | 25.0% |
| !! | ATCATTTTACGATGCTAATA+TGG | - | chr4_3:52622769-52622788 | Msa0646780:CDS | 25.0% |
| ! | GGATCATAAAATTTGAACAA+TGG | + | chr4_3:52622909-52622928 | None:intergenic | 25.0% |
| ! | AACAAAGATTGATAAATGCA+GGG | - | chr4_3:52622968-52622987 | Msa0646780:CDS | 25.0% |
| ! | ATGAATGTTCAATATTCTAC+AGG | + | chr4_3:52623609-52623628 | None:intergenic | 25.0% |
| !!! | ATTCAAATGCTTTGTTTGTA+GGG | - | chr4_3:52623833-52623852 | Msa0646780:intron | 25.0% |
| !!! | GTTCTATTTTTACATGTAGT+GGG | + | chr4_3:52624116-52624135 | None:intergenic | 25.0% |
| TTATTGGAAATGGTAACTGA+AGG | + | chr4_3:52619947-52619966 | None:intergenic | 30.0% | |
| GAGAGTGAGATTTAGATTAT+TGG | + | chr4_3:52619963-52619982 | None:intergenic | 30.0% | |
| TCATATATCCCAATTCCATT+TGG | - | chr4_3:52620001-52620020 | Msa0646780:three_prime_UTR | 30.0% | |
| ATGGAATTCCAAATGGAATT+GGG | + | chr4_3:52620012-52620031 | None:intergenic | 30.0% | |
| GTAATTGATGGAATTCCAAA+TGG | + | chr4_3:52620019-52620038 | None:intergenic | 30.0% | |
| TTTAATTGCGAGTGTAAGAA+AGG | + | chr4_3:52620075-52620094 | None:intergenic | 30.0% | |
| !! | CAAATTTGCTATGTGGTTAT+TGG | + | chr4_3:52620323-52620342 | None:intergenic | 30.0% |
| ATAACCACATAGCAAATTTG+AGG | - | chr4_3:52620323-52620342 | Msa0646780:CDS | 30.0% | |
| !!! | CATCATGATAATGGTTTTCT+TGG | - | chr4_3:52620361-52620380 | Msa0646780:intron | 30.0% |
| ATCTTAATTCAAAACCACGA+CGG | + | chr4_3:52620556-52620575 | None:intergenic | 30.0% | |
| !!! | TGGTTTTGAATTAAGATCGT+AGG | - | chr4_3:52620559-52620578 | Msa0646780:CDS | 30.0% |
| ! | TTTTTCCGCAATACAAAAGT+TGG | + | chr4_3:52620598-52620617 | None:intergenic | 30.0% |
| TTTGTATTGCGGAAAAATCT+TGG | - | chr4_3:52620601-52620620 | Msa0646780:intron | 30.0% | |
| AAATTATGGCCGCAATATAA+AGG | + | chr4_3:52620677-52620696 | None:intergenic | 30.0% | |
| ! | TTATATTGCGGCCATAATTT+TGG | - | chr4_3:52620677-52620696 | Msa0646780:intron | 30.0% |
| TCAGCTATAGTGGTAAAAAA+TGG | + | chr4_3:52620732-52620751 | None:intergenic | 30.0% | |
| AATATCAGGAACAAAGTCTT+CGG | + | chr4_3:52620866-52620885 | None:intergenic | 30.0% | |
| !!! | CAATGGAAGCAACATTTTTT+GGG | + | chr4_3:52620997-52621016 | None:intergenic | 30.0% |
| !!! | ACAATGGAAGCAACATTTTT+TGG | + | chr4_3:52620998-52621017 | None:intergenic | 30.0% |
| ! | AAATGTTGCTTCCATTGTAT+TGG | - | chr4_3:52621000-52621019 | Msa0646780:intron | 30.0% |
| ! | AATGTTGCTTCCATTGTATT+GGG | - | chr4_3:52621001-52621020 | Msa0646780:intron | 30.0% |
| TTGATTTCGTTTCAAAACGT+TGG | + | chr4_3:52621480-52621499 | None:intergenic | 30.0% | |
| CGAAATCAATAATGTCATGA+TGG | - | chr4_3:52621491-52621510 | Msa0646780:CDS | 30.0% | |
| ! | ACCTATTGTGTTTGATTTCA+CGG | + | chr4_3:52621543-52621562 | None:intergenic | 30.0% |
| ATTCTCAATGTTAGTGTTCT+TGG | + | chr4_3:52621661-52621680 | None:intergenic | 30.0% | |
| ! | CAATTTTCGGAAAAACCTAA+GGG | - | chr4_3:52622058-52622077 | Msa0646780:intron | 30.0% |
| TCACCATATATTGCATCTAT+GGG | - | chr4_3:52622481-52622500 | Msa0646780:intron | 30.0% | |
| ! | ATAGTGGAATTTCTCTTACT+TGG | + | chr4_3:52622618-52622637 | None:intergenic | 30.0% |
| ! | TAACACTTTAAAGGAGATAG+TGG | + | chr4_3:52622634-52622653 | None:intergenic | 30.0% |
| !!! | GTTTGTTTTGCCTTTTTTTC+AGG | - | chr4_3:52622703-52622722 | Msa0646780:CDS | 30.0% |
| !!! | CATTTTTTTTCGGAGACTAT+TGG | - | chr4_3:52622726-52622745 | Msa0646780:CDS | 30.0% |
| ! | TGTTAGTTTCATGATAGGAA+GGG | + | chr4_3:52622860-52622879 | None:intergenic | 30.0% |
| ! | ATGTTAGTTTCATGATAGGA+AGG | + | chr4_3:52622861-52622880 | None:intergenic | 30.0% |
| AATCTTGGAGATGTGAAAAT+GGG | + | chr4_3:52622939-52622958 | None:intergenic | 30.0% | |
| CATTTATCAATCTTTGTTGG+TGG | + | chr4_3:52622966-52622985 | None:intergenic | 30.0% | |
| CTGCATTTATCAATCTTTGT+TGG | + | chr4_3:52622969-52622988 | None:intergenic | 30.0% | |
| CAACAAAGATTGATAAATGC+AGG | - | chr4_3:52622967-52622986 | Msa0646780:CDS | 30.0% | |
| AGAAATTATGGTAGTTTACC+TGG | + | chr4_3:52623186-52623205 | None:intergenic | 30.0% | |
| GGTAAACTACCATAATTTCT+TGG | - | chr4_3:52623186-52623205 | Msa0646780:intron | 30.0% | |
| GCAATTAATGATTGACATTG+TGG | - | chr4_3:52623252-52623271 | Msa0646780:intron | 30.0% | |
| GTTCAATATTCTACAGGTTA+TGG | + | chr4_3:52623603-52623622 | None:intergenic | 30.0% | |
| !! | TTACTTGTTGTCTTTGTTGA+AGG | - | chr4_3:52623639-52623658 | Msa0646780:CDS | 30.0% |
| ! | TTTGAGTCCATTTTGTTAGT+TGG | - | chr4_3:52623761-52623780 | Msa0646780:five_prime_UTR | 30.0% |
| AAAACCACCAACTAACAAAA+TGG | + | chr4_3:52623771-52623790 | None:intergenic | 30.0% | |
| ! | CTACAAACAAAGCATTTGAA+TGG | + | chr4_3:52623834-52623853 | None:intergenic | 30.0% |
| !! | CATTCAAATGCTTTGTTTGT+AGG | - | chr4_3:52623832-52623851 | Msa0646780:intron | 30.0% |
| TTACAATTGTGATTCCTGAT+CGG | + | chr4_3:52623898-52623917 | None:intergenic | 30.0% | |
| ATCAGGAATCACAATTGTAA+TGG | - | chr4_3:52623898-52623917 | Msa0646780:intron | 30.0% | |
| TCTGTTCTCAAAGTAATCTT+TGG | + | chr4_3:52623989-52624008 | None:intergenic | 30.0% | |
| ! | AAGATTACTTTGAGAACAGA+AGG | - | chr4_3:52623989-52624008 | Msa0646780:five_prime_UTR | 30.0% |
| ! | TTTGGTTTCTCTATTGTACA+TGG | + | chr4_3:52624030-52624049 | None:intergenic | 30.0% |
| ATATAAACAAAAAGGGGGTT+TGG | + | chr4_3:52624048-52624067 | None:intergenic | 30.0% | |
| !! | TATTTTTACATGTAGTGGGA+GGG | + | chr4_3:52624112-52624131 | None:intergenic | 30.0% |
| !!! | CGTTCTATTTTTACATGTAG+TGG | + | chr4_3:52624117-52624136 | None:intergenic | 30.0% |
| !!! | GTACTACTAGGTGGTTTTAT+TGG | + | chr4_3:52619878-52619897 | None:intergenic | 35.0% |
| TTGAATGTTGTACTACTAGG+TGG | + | chr4_3:52619887-52619906 | None:intergenic | 35.0% | |
| GAGTTGAATGTTGTACTACT+AGG | + | chr4_3:52619890-52619909 | None:intergenic | 35.0% | |
| GATGGAATTCCAAATGGAAT+TGG | + | chr4_3:52620013-52620032 | None:intergenic | 35.0% | |
| TTGATACATCACCATCACAA+TGG | - | chr4_3:52620273-52620292 | Msa0646780:intron | 35.0% | |
| GTCTTCTTGTGTGAACTTTA+AGG | - | chr4_3:52620297-52620316 | Msa0646780:intron | 35.0% | |
| !! | CTTTCCTCAAATTTGCTATG+TGG | + | chr4_3:52620330-52620349 | None:intergenic | 35.0% |
| TTTCTTGGTGAGAGAATCAA+AGG | - | chr4_3:52620376-52620395 | Msa0646780:intron | 35.0% | |
| TTCTTGGTGAGAGAATCAAA+GGG | - | chr4_3:52620377-52620396 | Msa0646780:intron | 35.0% | |
| TCCTTGGATGATTAATCAGT+TGG | - | chr4_3:52620414-52620433 | Msa0646780:intron | 35.0% | |
| CCTTGGATGATTAATCAGTT+GGG | - | chr4_3:52620415-52620434 | Msa0646780:intron | 35.0% | |
| TAAGTTTGAGAACCAAAGAG+AGG | - | chr4_3:52620440-52620459 | Msa0646780:intron | 35.0% | |
| AAGTTTGAGAACCAAAGAGA+GGG | - | chr4_3:52620441-52620460 | Msa0646780:intron | 35.0% | |
| ! | TTTTACCACTATAGCTGATG+TGG | - | chr4_3:52620734-52620753 | Msa0646780:intron | 35.0% |
| ATATCAGGAACAAAGTCTTC+GGG | + | chr4_3:52620865-52620884 | None:intergenic | 35.0% | |
| ! | CATAAATGATGGAACCTGAA+AGG | + | chr4_3:52620960-52620979 | None:intergenic | 35.0% |
| ! | CTCTTTTGGTAAGAGGAAAA+AGG | + | chr4_3:52621045-52621064 | None:intergenic | 35.0% |
| CTGTGAGTAAATCATTGTCT+TGG | - | chr4_3:52621077-52621096 | Msa0646780:CDS | 35.0% | |
| ATTGTCTTGGTTGACTAAAC+AGG | - | chr4_3:52621090-52621109 | Msa0646780:CDS | 35.0% | |
| !!! | TACATTTTTCAGGTACCTGT+TGG | - | chr4_3:52621160-52621179 | Msa0646780:intron | 35.0% |
| ! | GTTGATGCCATTTCCAAAAT+AGG | + | chr4_3:52621302-52621321 | None:intergenic | 35.0% |
| TTTGGAAATGGCATCAACTT+TGG | - | chr4_3:52621304-52621323 | Msa0646780:intron | 35.0% | |
| ! | ATATGTGGAGGTATGTATCA+AGG | - | chr4_3:52621333-52621352 | Msa0646780:intron | 35.0% |
| ACCGTGAAATCAAACACAAT+AGG | - | chr4_3:52621539-52621558 | Msa0646780:CDS | 35.0% | |
| !! | TCAAACACAATAGGTTTTGG+CGG | - | chr4_3:52621548-52621567 | Msa0646780:CDS | 35.0% |
| ! | AAATTGGTTTCAAGGAACAG+CGG | - | chr4_3:52621599-52621618 | Msa0646780:CDS | 35.0% |
| GCAATTTACATGGGTATTTG+AGG | - | chr4_3:52621632-52621651 | Msa0646780:intron | 35.0% | |
| GAGAATGTAATAATCTTGGC+TGG | - | chr4_3:52621675-52621694 | Msa0646780:intron | 35.0% | |
| TGGTGATCATCTATACAGAA+TGG | - | chr4_3:52621695-52621714 | Msa0646780:intron | 35.0% | |
| !! | TCTATACAGAATGGACTACA+TGG | - | chr4_3:52621704-52621723 | Msa0646780:intron | 35.0% |
| AATCATTGAATACCTGCACA+AGG | + | chr4_3:52621731-52621750 | None:intergenic | 35.0% | |
| ! | CCTTAGGTTTTTCCGAAAAT+TGG | + | chr4_3:52622060-52622079 | None:intergenic | 35.0% |
| ! | CCAATTTTCGGAAAAACCTA+AGG | - | chr4_3:52622057-52622076 | Msa0646780:intron | 35.0% |
| GGTACAGTGAAATAACTCAA+AGG | - | chr4_3:52622322-52622341 | Msa0646780:CDS | 35.0% | |
| TCAGAAACACATGACTATAG+AGG | + | chr4_3:52622400-52622419 | None:intergenic | 35.0% | |
| GTTTGACAATCCAAAAAGAG+AGG | + | chr4_3:52622446-52622465 | None:intergenic | 35.0% | |
| TGTCAAACCAAGATGCATTA+AGG | - | chr4_3:52622458-52622477 | Msa0646780:intron | 35.0% | |
| GTCACCATATATTGCATCTA+TGG | - | chr4_3:52622480-52622499 | Msa0646780:intron | 35.0% | |
| ACTCCCATAGATGCAATATA+TGG | + | chr4_3:52622487-52622506 | None:intergenic | 35.0% | |
| !! | TACTCAAGCTTCTAAAATGG+AGG | - | chr4_3:52622530-52622549 | Msa0646780:intron | 35.0% |
| GATTTCAGATCCAAAGTCAT+TGG | + | chr4_3:52622566-52622585 | None:intergenic | 35.0% | |
| AATCATTCCTGCATCTGTTA+AGG | - | chr4_3:52622582-52622601 | Msa0646780:intron | 35.0% | |
| TCATAATTACTCCTTTGTGG+AGG | - | chr4_3:52622662-52622681 | Msa0646780:intron | 35.0% | |
| TTGTATTGTTACCTCCACAA+AGG | + | chr4_3:52622676-52622695 | None:intergenic | 35.0% | |
| TAATATGGCTCTTACTGAAG+AGG | - | chr4_3:52622784-52622803 | Msa0646780:CDS | 35.0% | |
| GAATCTTGGAGATGTGAAAA+TGG | + | chr4_3:52622940-52622959 | None:intergenic | 35.0% | |
| !! | TTTGTTGGTGGTAAGAATCT+TGG | + | chr4_3:52622954-52622973 | None:intergenic | 35.0% |
| TACAAAGAGCAACTCAAACA+TGG | + | chr4_3:52623061-52623080 | None:intergenic | 35.0% | |
| GTTGTACACTACATTCTCTA+AGG | + | chr4_3:52623117-52623136 | None:intergenic | 35.0% | |
| !!! | AGAACCAAGGTTTTAAACTG+AGG | - | chr4_3:52623222-52623241 | Msa0646780:intron | 35.0% |
| TTTACAGGACACTGTAATGA+TGG | - | chr4_3:52623422-52623441 | Msa0646780:intron | 35.0% | |
| TTACAGGACACTGTAATGAT+GGG | - | chr4_3:52623423-52623442 | Msa0646780:intron | 35.0% | |
| TTGGAAGTAACAGCAAAATC+AGG | - | chr4_3:52623514-52623533 | Msa0646780:CDS | 35.0% | |
| GTATAATTGACAAGAATGCC+AGG | - | chr4_3:52623666-52623685 | Msa0646780:CDS | 35.0% | |
| !!! | CTATTTTTACATGTAGTGGG+AGG | + | chr4_3:52624113-52624132 | None:intergenic | 35.0% |
| TCTTGGTGAGAGAATCAAAG+GGG | - | chr4_3:52620378-52620397 | Msa0646780:intron | 40.0% | |
| CCCAACTGATTAATCATCCA+AGG | + | chr4_3:52620418-52620437 | None:intergenic | 40.0% | |
| AACCAAAGAGAGGGTTAAGA+AGG | - | chr4_3:52620450-52620469 | Msa0646780:intron | 40.0% | |
| AAATGATGCCGTTGAGACTA+AGG | - | chr4_3:52620507-52620526 | Msa0646780:CDS | 40.0% | |
| TCAGCTTACCTTAGTCTCAA+CGG | + | chr4_3:52620518-52620537 | None:intergenic | 40.0% | |
| ! | CACTGCCAACTTTTGTATTG+CGG | - | chr4_3:52620590-52620609 | Msa0646780:intron | 40.0% |
| GTGGTCCACAACCAAAATTA+TGG | + | chr4_3:52620691-52620710 | None:intergenic | 40.0% | |
| ! | TGGACCACAGTTTAAAACCA+TGG | - | chr4_3:52620703-52620722 | Msa0646780:intron | 40.0% |
| ! | GGACCACAGTTTAAAACCAT+GGG | - | chr4_3:52620704-52620723 | Msa0646780:intron | 40.0% |
| !!! | GATCCCATGGTTTTAAACTG+TGG | + | chr4_3:52620710-52620729 | None:intergenic | 40.0% |
| GTGGTAAAAAATGGATCCCA+TGG | + | chr4_3:52620723-52620742 | None:intergenic | 40.0% | |
| GACAATGATTTACTCACAGC+AGG | + | chr4_3:52621076-52621095 | None:intergenic | 40.0% | |
| GACTAAACAGGCATCAGTTA+TGG | - | chr4_3:52621102-52621121 | Msa0646780:CDS | 40.0% | |
| !!! | ATTTTTCAGGTACCTGTTGG+TGG | - | chr4_3:52621163-52621182 | Msa0646780:intron | 40.0% |
| !!! | TTTTTCAGGTACCTGTTGGT+GGG | - | chr4_3:52621164-52621183 | Msa0646780:intron | 40.0% |
| CTGTTGATACAGTTGCTCAT+TGG | + | chr4_3:52621211-52621230 | None:intergenic | 40.0% | |
| ATGAGCAACTGTATCAACAG+TGG | - | chr4_3:52621211-52621230 | Msa0646780:intron | 40.0% | |
| ! | AATGGCATCAACTTTGGAGA+TGG | - | chr4_3:52621310-52621329 | Msa0646780:intron | 40.0% |
| ! | CAACTTTGGAGATGGATATG+TGG | - | chr4_3:52621318-52621337 | Msa0646780:intron | 40.0% |
| ! | GCTGGGAAAAATTGGTTTCA+AGG | - | chr4_3:52621591-52621610 | Msa0646780:CDS | 40.0% |
| ATGCTGTGAGGCAATTTACA+TGG | - | chr4_3:52621622-52621641 | Msa0646780:intron | 40.0% | |
| TGCTGTGAGGCAATTTACAT+GGG | - | chr4_3:52621623-52621642 | Msa0646780:intron | 40.0% | |
| !! | ATCGGATTACGGATTAGTCA+AGG | - | chr4_3:52622012-52622031 | Msa0646780:intron | 40.0% |
| TTAGTCAAGGTAGATAGCAG+AGG | - | chr4_3:52622025-52622044 | Msa0646780:intron | 40.0% | |
| ! | AGGTCGCATCATCCAATTTT+CGG | - | chr4_3:52622045-52622064 | Msa0646780:intron | 40.0% |
| ! | GATTTAAGATCAGCACCCTT+AGG | + | chr4_3:52622076-52622095 | None:intergenic | 40.0% |
| !! | GGGTGCTGATCTTAAATCAA+TGG | - | chr4_3:52622078-52622097 | Msa0646780:intron | 40.0% |
| TAGTTCATTCTCTTGCCTCT+TGG | - | chr4_3:52622135-52622154 | Msa0646780:intron | 40.0% | |
| AGTTCATTCTCTTGCCTCTT+GGG | - | chr4_3:52622136-52622155 | Msa0646780:intron | 40.0% | |
| !!! | CGCGAACGTTTTAAGACTTA+AGG | - | chr4_3:52622259-52622278 | Msa0646780:intron | 40.0% |
| ! | CAAGCAGATACCTCTCTTTT+TGG | - | chr4_3:52622433-52622452 | Msa0646780:CDS | 40.0% |
| ATGGTGACCTTAATGCATCT+TGG | + | chr4_3:52622468-52622487 | None:intergenic | 40.0% | |
| TATCCCACATCCAATGACTT+TGG | - | chr4_3:52622553-52622572 | Msa0646780:intron | 40.0% | |
| GATCCAAAGTCATTGGATGT+GGG | + | chr4_3:52622559-52622578 | None:intergenic | 40.0% | |
| AGATCCAAAGTCATTGGATG+TGG | + | chr4_3:52622560-52622579 | None:intergenic | 40.0% | |
| TTGCATTCCTTAACAGATGC+AGG | + | chr4_3:52622592-52622611 | None:intergenic | 40.0% | |
| GATGTGAAAATGGGTGTCTT+GGG | + | chr4_3:52622930-52622949 | None:intergenic | 40.0% | |
| AGATGTGAAAATGGGTGTCT+TGG | + | chr4_3:52622931-52622950 | None:intergenic | 40.0% | |
| GAGTTGCTCTTTGTAGATTG+TGG | - | chr4_3:52623066-52623085 | Msa0646780:intron | 40.0% | |
| TAGTGTACAACACTCCATTG+TGG | - | chr4_3:52623126-52623145 | Msa0646780:intron | 40.0% | |
| AGTGTACAACACTCCATTGT+GGG | - | chr4_3:52623127-52623146 | Msa0646780:intron | 40.0% | |
| GAACGTTCACGTTTGGATTA+CGG | - | chr4_3:52623151-52623170 | Msa0646780:intron | 40.0% | |
| AGTTCTCGGCCAAGAAATTA+TGG | + | chr4_3:52623198-52623217 | None:intergenic | 40.0% | |
| !! | CCTTGGTTCTATAGAGTTCT+CGG | + | chr4_3:52623212-52623231 | None:intergenic | 40.0% |
| ! | GCTACCTCAGTTTAAAACCT+TGG | + | chr4_3:52623229-52623248 | None:intergenic | 40.0% |
| ! | CAAGGTTTTTGATGTCTCAG+CGG | + | chr4_3:52623322-52623341 | None:intergenic | 40.0% |
| TCAAATCAAACCCTAAGGCT+TGG | - | chr4_3:52623352-52623371 | Msa0646780:intron | 40.0% | |
| !! | AGTTTTCTAGCCAAGCCTTA+GGG | + | chr4_3:52623365-52623384 | None:intergenic | 40.0% |
| !! | TAGTTTTCTAGCCAAGCCTT+AGG | + | chr4_3:52623366-52623385 | None:intergenic | 40.0% |
| ! | AAGCAATTTCGGATTCGGTT+TGG | + | chr4_3:52623461-52623480 | None:intergenic | 40.0% |
| CTCAGAAGCAATTTCGGATT+CGG | + | chr4_3:52623466-52623485 | None:intergenic | 40.0% | |
| TGCTAGCTCAGAAGCAATTT+CGG | + | chr4_3:52623472-52623491 | None:intergenic | 40.0% | |
| ! | CTGTTACTTCCAATCCCAAT+AGG | + | chr4_3:52623507-52623526 | None:intergenic | 40.0% |
| ATTGACAAGAATGCCAGGAT+TGG | - | chr4_3:52623671-52623690 | Msa0646780:CDS | 40.0% | |
| TTGACAAGAATGCCAGGATT+GGG | - | chr4_3:52623672-52623691 | Msa0646780:CDS | 40.0% | |
| CATGAACAAAGATGTGAGCA+TGG | - | chr4_3:52623709-52623728 | Msa0646780:CDS | 40.0% | |
| ! | GAGTCCATTTTGTTAGTTGG+TGG | - | chr4_3:52623764-52623783 | Msa0646780:five_prime_UTR | 40.0% |
| CGGATGTAAAATCCATCTTC+TGG | + | chr4_3:52623878-52623897 | None:intergenic | 40.0% | |
| !! | GATGGATTTTACATCCGATC+AGG | - | chr4_3:52623881-52623900 | Msa0646780:intron | 40.0% |
| AATGGAGAAAGCGACAATAG+AGG | - | chr4_3:52623916-52623935 | Msa0646780:intron | 40.0% | |
| ! | TGTCATATAAGTGGCTAGCT+TGG | - | chr4_3:52623946-52623965 | Msa0646780:five_prime_UTR | 40.0% |
| TGGAAATGGTAACTGAAGGC+TGG | + | chr4_3:52619943-52619962 | None:intergenic | 45.0% | |
| ACAAGAAGACGCCATTGTGA+TGG | + | chr4_3:52620287-52620306 | None:intergenic | 45.0% | |
| CTTGGTGAGAGAATCAAAGG+GGG | - | chr4_3:52620379-52620398 | Msa0646780:intron | 45.0% | |
| GGGGTGTGAATTATAGTCCT+TGG | - | chr4_3:52620398-52620417 | Msa0646780:intron | 45.0% | |
| AGGTAAGCTGAATCATGTCG+AGG | - | chr4_3:52620527-52620546 | Msa0646780:CDS | 45.0% | |
| GGTAAGCTGAATCATGTCGA+GGG | - | chr4_3:52620528-52620547 | Msa0646780:CDS | 45.0% | |
| GTAAGCTGAATCATGTCGAG+GGG | - | chr4_3:52620529-52620548 | Msa0646780:CDS | 45.0% | |
| CGGAAAAATCTTGGAAAGCG+CGG | - | chr4_3:52620610-52620629 | Msa0646780:intron | 45.0% | |
| !!! | TGCGGCCATAATTTTGGTTG+TGG | - | chr4_3:52620683-52620702 | Msa0646780:intron | 45.0% |
| GTGTCAACTTCAGACCTTTC+AGG | - | chr4_3:52620943-52620962 | Msa0646780:intron | 45.0% | |
| GTTGCTTCCATTGTATTGGG+AGG | - | chr4_3:52621004-52621023 | Msa0646780:intron | 45.0% | |
| AGAGGAAAAAGGTGAACACC+AGG | + | chr4_3:52621034-52621053 | None:intergenic | 45.0% | |
| ! | GTAGCAGCTCTTTTGGTAAG+AGG | + | chr4_3:52621052-52621071 | None:intergenic | 45.0% |
| AATAGGTGCGAGCAATGTGA+CGG | + | chr4_3:52621285-52621304 | None:intergenic | 45.0% | |
| ! | CACATTGCTCGCACCTATTT+TGG | - | chr4_3:52621286-52621305 | Msa0646780:CDS | 45.0% |
| !! | GCTCGCACCTATTTTGGAAA+TGG | - | chr4_3:52621292-52621311 | Msa0646780:intron | 45.0% |
| ! | CTTTGGAGATGGATATGTGG+AGG | - | chr4_3:52621321-52621340 | Msa0646780:intron | 45.0% |
| ! | CAATTTTTCCCAGCTTCTCC+TGG | + | chr4_3:52621585-52621604 | None:intergenic | 45.0% |
| CAGGAGAAGCTGGGAAAAAT+TGG | - | chr4_3:52621583-52621602 | Msa0646780:CDS | 45.0% | |
| ! | ACAGTATCATGTGCTGCTGT+TGG | - | chr4_3:52621856-52621875 | Msa0646780:intron | 45.0% |
| CACGACTGAAAAACAGGCAA+TGG | + | chr4_3:52621991-52622010 | None:intergenic | 45.0% | |
| !! | CCTGTTTTTCAGTCGTGCAT+CGG | - | chr4_3:52621994-52622013 | Msa0646780:CDS | 45.0% |
| TTCAGTCGTGCATCGGATTA+CGG | - | chr4_3:52622001-52622020 | Msa0646780:CDS | 45.0% | |
| TATGCGAACATGTTCCCAAG+AGG | + | chr4_3:52622153-52622172 | None:intergenic | 45.0% | |
| TCTTGGGAACATGTTCGCAT+AGG | - | chr4_3:52622152-52622171 | Msa0646780:CDS | 45.0% | |
| GGAGACTATTGGGAAGACAT+TGG | - | chr4_3:52622737-52622756 | Msa0646780:CDS | 45.0% | |
| ATGGCTCTTACTGAAGAGGT+AGG | - | chr4_3:52622788-52622807 | Msa0646780:CDS | 45.0% | |
| GTGGATGCAATAATCTCGCA+TGG | - | chr4_3:52623085-52623104 | Msa0646780:intron | 45.0% | |
| CCGAGAACTCTATAGAACCA+AGG | - | chr4_3:52623209-52623228 | Msa0646780:intron | 45.0% | |
| GAGATCTAGTGCAGCTAATG+CGG | - | chr4_3:52623281-52623300 | Msa0646780:intron | 45.0% | |
| TGATTTGAGCTGCAACGTCA+AGG | + | chr4_3:52623340-52623359 | None:intergenic | 45.0% | |
| GCAGCTCAAATCAAACCCTA+AGG | - | chr4_3:52623347-52623366 | Msa0646780:intron | 45.0% | |
| AATTGCTTCTGAGCTAGCAC+AGG | - | chr4_3:52623473-52623492 | Msa0646780:intron | 45.0% | |
| ATTGCTTCTGAGCTAGCACA+GGG | - | chr4_3:52623474-52623493 | Msa0646780:intron | 45.0% | |
| CACAGGGAAAGGTTCCTATT+GGG | - | chr4_3:52623490-52623509 | Msa0646780:intron | 45.0% | |
| GGAAAGGTTCCTATTGGGAT+TGG | - | chr4_3:52623495-52623514 | Msa0646780:intron | 45.0% | |
| GATGACATCTTTCCCAATCC+TGG | + | chr4_3:52623687-52623706 | None:intergenic | 45.0% | |
| GAAGCAGATAGACCAGAAGA+TGG | - | chr4_3:52623863-52623882 | Msa0646780:intron | 45.0% | |
| GGACAGCACTGTCATATAAG+TGG | - | chr4_3:52623937-52623956 | Msa0646780:five_prime_UTR | 45.0% | |
| GGCCTTCTTAACCCTCTCTT+TGG | + | chr4_3:52620455-52620474 | None:intergenic | 50.0% | |
| AGGGTTAAGAAGGCCAAACC+TGG | - | chr4_3:52620460-52620479 | Msa0646780:intron | 50.0% | |
| AGCAGACACAACACCAGGTT+TGG | + | chr4_3:52620476-52620495 | None:intergenic | 50.0% | |
| AGAACAGCAGACACAACACC+AGG | + | chr4_3:52620481-52620500 | None:intergenic | 50.0% | |
| TGCAGCCACATCAGCTATAG+TGG | + | chr4_3:52620742-52620761 | None:intergenic | 50.0% | |
| GCTTCCATTGTATTGGGAGG+AGG | - | chr4_3:52621007-52621026 | Msa0646780:intron | 50.0% | |
| AGGACCTCCTCCCAATACAA+TGG | + | chr4_3:52621014-52621033 | None:intergenic | 50.0% | |
| ATTGTATTGGGAGGAGGTCC+TGG | - | chr4_3:52621013-52621032 | Msa0646780:intron | 50.0% | |
| ! | AGCAGGTGTAGCAGCTCTTT+TGG | + | chr4_3:52621059-52621078 | None:intergenic | 50.0% |
| ! | TACCTGTTGGTGGGTGCTAT+AGG | - | chr4_3:52621173-52621192 | Msa0646780:intron | 50.0% |
| CCGATGCACGACTGAAAAAC+AGG | + | chr4_3:52621997-52622016 | None:intergenic | 50.0% | |
| ACGTGAACGTTCACCCACAA+TGG | + | chr4_3:52623143-52623162 | None:intergenic | 50.0% | |
| TGTGGGTGAACGTTCACGTT+TGG | - | chr4_3:52623144-52623163 | Msa0646780:intron | 50.0% | |
| TTCTGAGCTAGCACAGGGAA+AGG | - | chr4_3:52623479-52623498 | Msa0646780:intron | 50.0% | |
| GCACAGGGAAAGGTTCCTAT+TGG | - | chr4_3:52623489-52623508 | Msa0646780:intron | 50.0% | |
| TTTCCCCATCCCTCTCGTGA+AGG | - | chr4_3:52619838-52619857 | Msa0646780:three_prime_UTR | 55.0% | |
| AGAGCCTTCACGAGAGGGAT+GGG | + | chr4_3:52619845-52619864 | None:intergenic | 55.0% | |
| AGCTGATGTGGCTGCAACTG+CGG | - | chr4_3:52620746-52620765 | Msa0646780:intron | 55.0% | |
| AGCCTATAGCACCCACCAAC+AGG | + | chr4_3:52621178-52621197 | None:intergenic | 55.0% | |
| ACTCAAACGCCAGGAGAAGC+TGG | - | chr4_3:52621573-52621592 | Msa0646780:CDS | 55.0% | |
| CTCAAACGCCAGGAGAAGCT+GGG | - | chr4_3:52621574-52621593 | Msa0646780:CDS | 55.0% | |
| AAGGAACAGCGGATGCTGTG+AGG | - | chr4_3:52621610-52621629 | Msa0646780:CDS | 55.0% | |
| GGACTACATGGACCTTGTGC+AGG | - | chr4_3:52621716-52621735 | Msa0646780:intron | 55.0% | |
| !! | CATGTGCTGCTGTTGGTGAC+AGG | - | chr4_3:52621863-52621882 | Msa0646780:intron | 55.0% |
| ! | GGATTACGGTGTTGAGCTCC+AGG | - | chr4_3:52623165-52623184 | Msa0646780:intron | 55.0% |
| TGTACGCGCGCAGAGTAGAA+GGG | - | chr4_3:52624085-52624104 | Msa0646780:five_prime_UTR | 55.0% | |
| GAGCCTTCACGAGAGGGATG+GGG | + | chr4_3:52619844-52619863 | None:intergenic | 60.0% | |
| CAGAGCCTTCACGAGAGGGA+TGG | + | chr4_3:52619846-52619865 | None:intergenic | 60.0% | |
| CATCCCTCTCGTGAAGGCTC+TGG | - | chr4_3:52619844-52619863 | Msa0646780:three_prime_UTR | 60.0% | |
| GAGCCAGAGCCTTCACGAGA+GGG | + | chr4_3:52619850-52619869 | None:intergenic | 60.0% | |
| TGAGCCAGAGCCTTCACGAG+AGG | + | chr4_3:52619851-52619870 | None:intergenic | 60.0% | |
| TTGGCGGCTACTCAAACGCC+AGG | - | chr4_3:52621564-52621583 | Msa0646780:CDS | 60.0% | |
| GTGTACGCGCGCAGAGTAGA+AGG | - | chr4_3:52624084-52624103 | Msa0646780:five_prime_UTR | 60.0% | |
| TCATGTCGAGGGGTCCGTCG+TGG | - | chr4_3:52620539-52620558 | Msa0646780:CDS | 65.0% | |
| TGTGGCTGCAACTGCGGTCG+CGG | - | chr4_3:52620752-52620771 | Msa0646780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 52619834 | 52624201 | 52619834 | ID=Msa0646780;Name=Msa0646780 |
| chr4_3 | mRNA | 52619834 | 52624201 | 52619834 | ID=Msa0646780-mRNA-1;Parent=Msa0646780;Name=Msa0646780-mRNA-1;_AED=0.11;_eAED=0.11;_QI=330|0.92|0.92|1|0.92|0.85|14|246|537 |
| chr4_3 | exon | 52619834 | 52620181 | 52619834 | ID=Msa0646780-mRNA-1:exon:12960;Parent=Msa0646780-mRNA-1 |
| chr4_3 | exon | 52620314 | 52620374 | 52620314 | ID=Msa0646780-mRNA-1:exon:12959;Parent=Msa0646780-mRNA-1 |
| chr4_3 | exon | 52620500 | 52620606 | 52620500 | ID=Msa0646780-mRNA-1:exon:12958;Parent=Msa0646780-mRNA-1 |
| chr4_3 | exon | 52620849 | 52620953 | 52620849 | ID=Msa0646780-mRNA-1:exon:12957;Parent=Msa0646780-mRNA-1 |
| chr4_3 | exon | 52621046 | 52621132 | 52621046 | ID=Msa0646780-mRNA-1:exon:12956;Parent=Msa0646780-mRNA-1 |
| chr4_3 | exon | 52621230 | 52621310 | 52621230 | ID=Msa0646780-mRNA-1:exon:12955;Parent=Msa0646780-mRNA-1 |
| chr4_3 | exon | 52621417 | 52621629 | 52621417 | ID=Msa0646780-mRNA-1:exon:12954;Parent=Msa0646780-mRNA-1 |
| chr4_3 | exon | 52621936 | 52622029 | 52621936 | ID=Msa0646780-mRNA-1:exon:12953;Parent=Msa0646780-mRNA-1 |
| chr4_3 | exon | 52622151 | 52622206 | 52622151 | ID=Msa0646780-mRNA-1:exon:12952;Parent=Msa0646780-mRNA-1 |
| chr4_3 | exon | 52622298 | 52622474 | 52622298 | ID=Msa0646780-mRNA-1:exon:12951;Parent=Msa0646780-mRNA-1 |
| chr4_3 | exon | 52622693 | 52622863 | 52622693 | ID=Msa0646780-mRNA-1:exon:12950;Parent=Msa0646780-mRNA-1 |
| chr4_3 | exon | 52622957 | 52623079 | 52622957 | ID=Msa0646780-mRNA-1:exon:12949;Parent=Msa0646780-mRNA-1 |
| chr4_3 | exon | 52623507 | 52623801 | 52623507 | ID=Msa0646780-mRNA-1:exon:12948;Parent=Msa0646780-mRNA-1 |
| chr4_3 | exon | 52623930 | 52624201 | 52623930 | ID=Msa0646780-mRNA-1:exon:12947;Parent=Msa0646780-mRNA-1 |
| chr4_3 | five_prime_UTR | 52623930 | 52624201 | 52623930 | ID=Msa0646780-mRNA-1:five_prime_utr;Parent=Msa0646780-mRNA-1 |
| chr4_3 | five_prime_UTR | 52623744 | 52623801 | 52623744 | ID=Msa0646780-mRNA-1:five_prime_utr;Parent=Msa0646780-mRNA-1 |
| chr4_3 | CDS | 52623507 | 52623743 | 52623507 | ID=Msa0646780-mRNA-1:cds;Parent=Msa0646780-mRNA-1 |
| chr4_3 | CDS | 52622957 | 52623079 | 52622957 | ID=Msa0646780-mRNA-1:cds;Parent=Msa0646780-mRNA-1 |
| chr4_3 | CDS | 52622693 | 52622863 | 52622693 | ID=Msa0646780-mRNA-1:cds;Parent=Msa0646780-mRNA-1 |
| chr4_3 | CDS | 52622298 | 52622474 | 52622298 | ID=Msa0646780-mRNA-1:cds;Parent=Msa0646780-mRNA-1 |
| chr4_3 | CDS | 52622151 | 52622206 | 52622151 | ID=Msa0646780-mRNA-1:cds;Parent=Msa0646780-mRNA-1 |
| chr4_3 | CDS | 52621936 | 52622029 | 52621936 | ID=Msa0646780-mRNA-1:cds;Parent=Msa0646780-mRNA-1 |
| chr4_3 | CDS | 52621417 | 52621629 | 52621417 | ID=Msa0646780-mRNA-1:cds;Parent=Msa0646780-mRNA-1 |
| chr4_3 | CDS | 52621230 | 52621310 | 52621230 | ID=Msa0646780-mRNA-1:cds;Parent=Msa0646780-mRNA-1 |
| chr4_3 | CDS | 52621046 | 52621132 | 52621046 | ID=Msa0646780-mRNA-1:cds;Parent=Msa0646780-mRNA-1 |
| chr4_3 | CDS | 52620849 | 52620953 | 52620849 | ID=Msa0646780-mRNA-1:cds;Parent=Msa0646780-mRNA-1 |
| chr4_3 | CDS | 52620500 | 52620606 | 52620500 | ID=Msa0646780-mRNA-1:cds;Parent=Msa0646780-mRNA-1 |
| chr4_3 | CDS | 52620314 | 52620374 | 52620314 | ID=Msa0646780-mRNA-1:cds;Parent=Msa0646780-mRNA-1 |
| chr4_3 | CDS | 52620080 | 52620181 | 52620080 | ID=Msa0646780-mRNA-1:cds;Parent=Msa0646780-mRNA-1 |
| chr4_3 | three_prime_UTR | 52619834 | 52620079 | 52619834 | ID=Msa0646780-mRNA-1:three_prime_utr;Parent=Msa0646780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
